AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000297.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000297.01.T01 MTR_1g018750 81.643 207 5 1 1 174 37 243 6.71e-118 336
MsG0180000297.01.T01 MTR_3g102390 49.765 213 67 3 1 174 1 212 1.09e-63 197
MsG0180000297.01.T01 MTR_1g107475 51.741 201 67 5 1 174 23 220 2.31e-61 191
MsG0180000297.01.T01 MTR_1g107475 48.372 215 67 5 1 174 23 234 3.32e-59 186
MsG0180000297.01.T01 MTR_4g031010 46.009 213 76 2 1 174 1 213 1.90e-57 183
MsG0180000297.01.T01 MTR_5g023160 87.500 48 6 0 167 214 33 80 3.36e-23 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000297.01.T01 AT4G34215 53.271 214 58 5 1 174 33 244 1.14e-64 201
MsG0180000297.01.T01 AT4G34215 53.271 214 58 5 1 174 33 244 1.14e-64 201
MsG0180000297.01.T01 AT3G53010 47.664 214 69 4 1 174 40 250 6.95e-59 187

Find 57 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAAGCCTTCGAGAATTTC+TGG 0.101282 1:+4102389 None:intergenic
GATGGGCTTGGTTTGCATTC+TGG 0.239456 1:+4108960 None:intergenic
AACCGAGGCGCGTCTATTGC+TGG 0.290212 1:+4102326 None:intergenic
GTATTTAGCTTTAAAATTGA+TGG 0.341457 1:+4108942 None:intergenic
TTTCTGGAAGGACTCCCTTT+GGG 0.362193 1:+4102405 None:intergenic
GCATCAACACATTTGACATT+AGG 0.366408 1:+4106282 None:intergenic
GAAGGTGAGACATGCTCAAT+TGG 0.371845 1:-4106316 MsG0180000297.01.T01:CDS
ATGCAGGTAGCACTTGCATC+AGG 0.373953 1:-4106357 MsG0180000297.01.T01:intron
AGCTAAATACAAAACTCAAA+TGG 0.377066 1:-4108929 MsG0180000297.01.T01:CDS
AGCTTTAAAATTGATGGGCT+TGG 0.384064 1:+4108948 None:intergenic
ATTTCTGGAAGGACTCCCTT+TGG 0.414301 1:+4102404 None:intergenic
ATCACATTTGTATAATGAAT+TGG 0.419666 1:-4108736 MsG0180000297.01.T01:CDS
AAGATCTATTGAATCGGTTA+AGG 0.437967 1:-4108709 MsG0180000297.01.T01:CDS
AGAATTGAAGAGTGGAGAAA+TGG 0.441126 1:-4108759 MsG0180000297.01.T01:CDS
AGTGGTGGTGAATGTGTTAT+AGG 0.445867 1:-4108810 MsG0180000297.01.T01:CDS
GGCTTGGTTTGCATTCTGGT+GGG 0.447461 1:+4108964 None:intergenic
GCTAAATACAAAACTCAAAT+GGG 0.451447 1:-4108928 MsG0180000297.01.T01:CDS
TTCATTTGCAAAAGCAAACC+CGG 0.451898 1:+4108845 None:intergenic
TATTTAGCTTTAAAATTGAT+GGG 0.464281 1:+4108943 None:intergenic
AAAACTTGTGGTGTTGGACC+CGG 0.468881 1:-4108864 MsG0180000297.01.T01:CDS
GGGCTTGGTTTGCATTCTGG+TGG 0.470102 1:+4108963 None:intergenic
CTTGTTCCTTGTGCAGTTGG+TGG 0.473553 1:-4108786 MsG0180000297.01.T01:CDS
GGTCTTGTTCCTTGTGCAGT+TGG 0.481808 1:-4108789 MsG0180000297.01.T01:CDS
TGAGTTGCCCCAAGCCTAAG+AGG 0.497584 1:-4102370 MsG0180000297.01.T01:CDS
GGGCAATGACACAGCTAATG+AGG 0.501878 1:+4102299 None:intergenic
AAACTTGTGGTGTTGGACCC+GGG 0.509374 1:-4108863 MsG0180000297.01.T01:CDS
CTTCATGCAGATATAGATGT+AGG 0.517583 1:-4108888 MsG0180000297.01.T01:CDS
TTGTTCCTTGTGCAGTTGGT+GGG 0.521171 1:-4108785 MsG0180000297.01.T01:CDS
AAGGTGAGACATGCTCAATT+GGG 0.524583 1:-4106315 MsG0180000297.01.T01:CDS
AACCAGCAATAGACGCGCCT+CGG 0.526622 1:-4102328 MsG0180000297.01.T01:CDS
GGTGAGAAGATCTATTGAAT+CGG 0.527189 1:-4108715 MsG0180000297.01.T01:CDS
TGTCAAATGTGTTGATGCTA+AGG 0.537974 1:-4106277 MsG0180000297.01.T01:CDS
CAAAGCAACATGGCTGGTCG+AGG 0.552658 1:-4109020 None:intergenic
TTCTGGAAGGACTCCCTTTG+GGG 0.562857 1:+4102406 None:intergenic
GCAGGACAAAGCAACATGGC+TGG 0.563412 1:-4109026 None:intergenic
CTCGTCCCACCAACTGCACA+AGG 0.564466 1:+4108780 None:intergenic
TGCAGGTAGCACTTGCATCA+GGG 0.569182 1:-4106356 MsG0180000297.01.T01:intron
AATGAAATTGTTAGAATGAG+TGG 0.572648 1:-4108828 MsG0180000297.01.T01:CDS
GAGTTGCCCCAAGCCTAAGA+GGG 0.573107 1:-4102369 MsG0180000297.01.T01:CDS
GGAAGGCAAGTTTATAGAGA+AGG 0.575658 1:-4106334 MsG0180000297.01.T01:CDS
GCAGGTAGCACTTGCATCAG+GGG 0.585921 1:-4106355 MsG0180000297.01.T01:intron
ACATCTATATCTGCATGAAG+AGG 0.586139 1:+4108891 None:intergenic
GTGGGACGAGAATTGAAGAG+TGG 0.589128 1:-4108767 MsG0180000297.01.T01:CDS
GAACCTCAGACATTGTGGTA+AGG 0.594017 1:+4106226 None:intergenic
GTCCTTCCAGAAATTCTCGA+AGG 0.600721 1:-4102395 MsG0180000297.01.T01:CDS
TAAATGAACCTCAGACATTG+TGG 0.604324 1:+4106221 None:intergenic
GTCAAATGTGTTGATGCTAA+GGG 0.607569 1:-4106276 MsG0180000297.01.T01:CDS
TCTATTGAATCGGTTAAGGA+TGG 0.608408 1:-4108705 MsG0180000297.01.T01:CDS
TCACCTTACCACAATGTCTG+AGG 0.609569 1:-4106229 MsG0180000297.01.T01:intron
GTAGCACTTGCATCAGGGGA+AGG 0.611333 1:-4106351 MsG0180000297.01.T01:CDS
AGCCTTCGAGAATTTCTGGA+AGG 0.617434 1:+4102393 None:intergenic
AGCAACATGGCTGGTCGAGG+AGG 0.627227 1:-4109017 None:intergenic
TCATTTGCAAAAGCAAACCC+GGG 0.638917 1:+4108846 None:intergenic
GAATCGGTTAAGGATGGTGA+TGG 0.647703 1:-4108699 MsG0180000297.01.T01:CDS
AGTTGCCCCAAGCCTAAGAG+GGG 0.648724 1:-4102368 MsG0180000297.01.T01:CDS
GTTGCCCCAAGCCTAAGAGG+GGG 0.671283 1:-4102367 MsG0180000297.01.T01:CDS
GAAATTGTTAGAATGAGTGG+TGG 0.705762 1:-4108825 MsG0180000297.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATTT+AGG - Chr1:4107528-4107547 MsG0180000297.01.T01:intron 0.0%
!!! TTAAAATTTTTATTTTAAAA+GGG + Chr1:4107600-4107619 None:intergenic 0.0%
!! AATACAAAATTTATAACTAA+TGG - Chr1:4104190-4104209 MsG0180000297.01.T01:intron 10.0%
!! AATTCTCTTATAAAAAATAA+TGG + Chr1:4104051-4104070 None:intergenic 10.0%
!! GTTAAAAAACAAAAAATTAT+AGG - Chr1:4103681-4103700 MsG0180000297.01.T01:intron 10.0%
!!! AAATTCTATTTTTATTGATA+CGG + Chr1:4106827-4106846 None:intergenic 10.0%
!!! ACGTTTTTAATTTAAAATTT+TGG - Chr1:4103113-4103132 MsG0180000297.01.T01:intron 10.0%
!!! TTTTAAATTTATGCATTTTA+CGG + Chr1:4104837-4104856 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTGAAGAA+AGG - Chr1:4105627-4105646 MsG0180000297.01.T01:intron 10.0%
!! AAAATGAAATAGTACTTATA+CGG - Chr1:4104240-4104259 MsG0180000297.01.T01:intron 15.0%
!! AACAATGTATAATATATGTA+AGG - Chr1:4104574-4104593 MsG0180000297.01.T01:intron 15.0%
!! AGGAAAAAAAGTAATTATAT+TGG + Chr1:4103284-4103303 None:intergenic 15.0%
!! AGTATTAATTAGAGTTATAA+AGG + Chr1:4103304-4103323 None:intergenic 15.0%
!! ATAAAAAGAAAAATCTTTGT+CGG - Chr1:4108136-4108155 MsG0180000297.01.T01:intron 15.0%
!! ATCATAATGTAATAATAACA+AGG - Chr1:4108088-4108107 MsG0180000297.01.T01:intron 15.0%
!! CTTCAAAAAAAAAAAAAATG+TGG + Chr1:4105625-4105644 None:intergenic 15.0%
!! GCATATATAAAATCTAAATT+TGG - Chr1:4107975-4107994 MsG0180000297.01.T01:intron 15.0%
!! GTAATAATACTCAAATTATA+AGG + Chr1:4106388-4106407 None:intergenic 15.0%
!! TATTATTAAACAGATTAGTA+CGG + Chr1:4103823-4103842 None:intergenic 15.0%
!! TTGACTAATAAGAAAATTTA+AGG - Chr1:4104353-4104372 MsG0180000297.01.T01:intron 15.0%
!!! AAAAAAAAAAAGTGTTTTGT+AGG - Chr1:4107178-4107197 MsG0180000297.01.T01:intron 15.0%
!!! AAAAAAAAAAGTGTTTTGTA+GGG - Chr1:4107179-4107198 MsG0180000297.01.T01:intron 15.0%
!!! AAAACAATTGTATTTTGTAA+AGG - Chr1:4106660-4106679 MsG0180000297.01.T01:intron 15.0%
!!! CAAAACACTTTTTTTTTTTT+TGG + Chr1:4107177-4107196 None:intergenic 15.0%
!!! CTTTATAAATATTTTTTGTG+TGG + Chr1:4106076-4106095 None:intergenic 15.0%
!!! TAAAAAACAAGTTTTTTAAC+AGG + Chr1:4103989-4104008 None:intergenic 15.0%
!!! TAAAAAGTATTATGGTTATA+AGG - Chr1:4107421-4107440 MsG0180000297.01.T01:intron 15.0%
!!! TAAATTTTGAATCATTAACA+AGG - Chr1:4103547-4103566 MsG0180000297.01.T01:intron 15.0%
!!! TATTGTACCTTTTTTTTTTT+AGG - Chr1:4108889-4108908 MsG0180000297.01.T01:CDS 15.0%
!!! TATTTAGCTTTAAAATTGAT+GGG + Chr1:4102384-4102403 None:intergenic 15.0%
!!! TTTAAAATGATAAAGTTAAG+AGG - Chr1:4104707-4104726 MsG0180000297.01.T01:intron 15.0%
!! AAAAACAATGAAAAACTATG+CGG - Chr1:4107031-4107050 MsG0180000297.01.T01:intron 20.0%
!! AAATAGAATTTATGCATTTG+TGG - Chr1:4106836-4106855 MsG0180000297.01.T01:intron 20.0%
!! AATAAAGCAACAAATAATCA+CGG - Chr1:4104731-4104750 MsG0180000297.01.T01:intron 20.0%
!! AATTATCCATCAAAAAAGTT+TGG - Chr1:4103148-4103167 MsG0180000297.01.T01:intron 20.0%
!! AGAATTTAATTGAGAATCTT+AGG - Chr1:4102730-4102749 MsG0180000297.01.T01:intron 20.0%
!! ATCACATTTGTATAATGAAT+TGG - Chr1:4102588-4102607 MsG0180000297.01.T01:intron 20.0%
!! ATTATCCATCAAAAAAGTTT+GGG - Chr1:4103149-4103168 MsG0180000297.01.T01:intron 20.0%
!! ATTATTAAACAGATTAGTAC+GGG + Chr1:4103822-4103841 None:intergenic 20.0%
!! ATTTATATTGCAGTAAAATG+TGG - Chr1:4106964-4106983 MsG0180000297.01.T01:intron 20.0%
!! CTTGTGTATAATTAAATTGA+TGG + Chr1:4105167-4105186 None:intergenic 20.0%
!! GCATAAAAATAATTTAAGTG+TGG + Chr1:4104951-4104970 None:intergenic 20.0%
!! GTAAAGTCCTAAAAAAAAAA+AGG + Chr1:4108899-4108918 None:intergenic 20.0%
!! GTTTCAAAAAACAAAGTATA+TGG - Chr1:4108431-4108450 MsG0180000297.01.T01:intron 20.0%
!! TAAAAAGAAAAATCTTTGTC+GGG - Chr1:4108137-4108156 MsG0180000297.01.T01:intron 20.0%
!! TGATTTAAATCTTGATACTA+AGG - Chr1:4107487-4107506 MsG0180000297.01.T01:intron 20.0%
!! TTACGTGAACATAAATTTAT+TGG + Chr1:4106034-4106053 None:intergenic 20.0%
!! TTGAAATATACATTGAAGAA+TGG + Chr1:4105390-4105409 None:intergenic 20.0%
!! TTTACAACATAGATTGAATT+TGG + Chr1:4107219-4107238 None:intergenic 20.0%
!!! AAATTAGATGTTGTATTTTG+TGG - Chr1:4108387-4108406 MsG0180000297.01.T01:intron 20.0%
!!! AACACTTTTTTTTTTTTTGG+AGG + Chr1:4107174-4107193 None:intergenic 20.0%
!!! AACTTTTTCTTTTTGTACAT+TGG - Chr1:4103957-4103976 MsG0180000297.01.T01:intron 20.0%
!!! AATACAACATCTAATTTTGT+TGG + Chr1:4108384-4108403 None:intergenic 20.0%
!!! ACACTTTTTTTTTTTTTGGA+GGG + Chr1:4107173-4107192 None:intergenic 20.0%
!!! ACCATAATACTTTTTACATA+CGG + Chr1:4107417-4107436 None:intergenic 20.0%
!!! ACTTTTTTGATGGATAATTA+TGG + Chr1:4103147-4103166 None:intergenic 20.0%
!!! AGTTCTGTTTTCAATAATAA+AGG + Chr1:4103909-4103928 None:intergenic 20.0%
!!! ATTTTTTTGTTGACAAAATG+TGG + Chr1:4105660-4105679 None:intergenic 20.0%
!!! CACTTAAATTATTTTTATGC+AGG - Chr1:4104951-4104970 MsG0180000297.01.T01:intron 20.0%
!!! CTTTTTTGATGGATAATTAT+GGG + Chr1:4103146-4103165 None:intergenic 20.0%
!!! CTTTTTTTGTCATATTTTGT+TGG - Chr1:4102820-4102839 MsG0180000297.01.T01:intron 20.0%
!!! GAAATTTGAAATTCGAATAT+AGG + Chr1:4103057-4103076 None:intergenic 20.0%
!!! GATGATTTTAGATTTATAGT+TGG + Chr1:4108071-4108090 None:intergenic 20.0%
!!! GATTTTTCAATAATGAAATG+AGG - Chr1:4103860-4103879 MsG0180000297.01.T01:intron 20.0%
!!! GTATTTAGCTTTAAAATTGA+TGG + Chr1:4102385-4102404 None:intergenic 20.0%
!!! GTTCTGTTTTCAATAATAAA+GGG + Chr1:4103908-4103927 None:intergenic 20.0%
!!! GTTTGTTTTTTTTAGTCTAT+TGG - Chr1:4102968-4102987 MsG0180000297.01.T01:intron 20.0%
!!! TATAATACAGAGCTTTTATA+TGG + Chr1:4106749-4106768 None:intergenic 20.0%
!!! TTAACTTTTTGTTCATTGAA+GGG - Chr1:4108208-4108227 MsG0180000297.01.T01:intron 20.0%
!!! TTAGTTTCCAATTCATTTTT+GGG - Chr1:4105486-4105505 MsG0180000297.01.T01:intron 20.0%
!!! TTTAACTTTTTGTTCATTGA+AGG - Chr1:4108207-4108226 MsG0180000297.01.T01:intron 20.0%
!!! TTTACCATTTTAACGTATTT+AGG + Chr1:4107627-4107646 None:intergenic 20.0%
! AAAAAGAAAAATCTTTGTCG+GGG - Chr1:4108138-4108157 MsG0180000297.01.T01:intron 25.0%
! AAACACTATGCTTATTTACA+GGG - Chr1:4106527-4106546 MsG0180000297.01.T01:intron 25.0%
! AAATAAATGTAATGCATGCA+TGG - Chr1:4108032-4108051 MsG0180000297.01.T01:intron 25.0%
! AAGGTACAATATCAGATATT+AGG + Chr1:4108880-4108899 None:intergenic 25.0%
! AAGTGGAATATGTATTGAAT+TGG + Chr1:4103340-4103359 None:intergenic 25.0%
! AATGAAATTGTTAGAATGAG+TGG - Chr1:4102496-4102515 MsG0180000297.01.T01:intron 25.0%
! ACACAAAGTGATAAAAATTG+AGG + Chr1:4107700-4107719 None:intergenic 25.0%
! ACTTATACGGTATAAATATG+TGG - Chr1:4104253-4104272 MsG0180000297.01.T01:intron 25.0%
! AGCATGATTCGAAAAATTTA+TGG - Chr1:4103592-4103611 MsG0180000297.01.T01:intron 25.0%
! AGCTAAATACAAAACTCAAA+TGG - Chr1:4102395-4102414 MsG0180000297.01.T01:CDS 25.0%
! AGGTACAATATCAGATATTA+GGG + Chr1:4108879-4108898 None:intergenic 25.0%
! AGTAGTTTAACAAATTGACA+AGG - Chr1:4103625-4103644 MsG0180000297.01.T01:intron 25.0%
! AGTGGAATATGTATTGAATT+GGG + Chr1:4103339-4103358 None:intergenic 25.0%
! ATCCTTGGATACAATTAAAT+TGG + Chr1:4105942-4105961 None:intergenic 25.0%
! ATCGACATGAATATTTGAAT+AGG - Chr1:4105511-4105530 MsG0180000297.01.T01:intron 25.0%
! ATGATCAGTTCGTAAATTAA+TGG - Chr1:4106107-4106126 MsG0180000297.01.T01:intron 25.0%
! ATGATTCGAAAAATTTATGG+AGG - Chr1:4103595-4103614 MsG0180000297.01.T01:intron 25.0%
! ATGGAAAGCTTGAAATTATT+TGG - Chr1:4106865-4106884 MsG0180000297.01.T01:intron 25.0%
! ATTAATTTACGAACTGATCA+TGG + Chr1:4106108-4106127 None:intergenic 25.0%
! ATTCTTGCTAATTGGATTAT+TGG + Chr1:4104666-4104685 None:intergenic 25.0%
! CATATATATCCTAACTAAGT+TGG - Chr1:4104638-4104657 MsG0180000297.01.T01:intron 25.0%
! GAAAAAGTAGATTGAGATAA+TGG + Chr1:4104026-4104045 None:intergenic 25.0%
! GAGTATTATTACAGTAGAAT+TGG - Chr1:4106396-4106415 MsG0180000297.01.T01:intron 25.0%
! GCTAAATACAAAACTCAAAT+GGG - Chr1:4102396-4102415 MsG0180000297.01.T01:CDS 25.0%
! GTAAATGACTCAGTTATTAT+GGG + Chr1:4103216-4103235 None:intergenic 25.0%
! GTAGTTTAACAAATTGACAA+GGG - Chr1:4103626-4103645 MsG0180000297.01.T01:intron 25.0%
! TAAAATGGTAAAAGATTGCA+GGG - Chr1:4107635-4107654 MsG0180000297.01.T01:intron 25.0%
! TAAACACTATGCTTATTTAC+AGG - Chr1:4106526-4106545 MsG0180000297.01.T01:intron 25.0%
! TAAATCATTGTTGAGTCATT+AGG + Chr1:4107474-4107493 None:intergenic 25.0%
! TAAATGAAGAGAGAGAAAAA+TGG + Chr1:4103413-4103432 None:intergenic 25.0%
! TAACTACTGTTGAGTTATAA+TGG + Chr1:4105768-4105787 None:intergenic 25.0%
! TCCTTGGATACAATTAAATT+GGG + Chr1:4105941-4105960 None:intergenic 25.0%
! TGGTAATCTCAAATAAATCA+TGG - Chr1:4105968-4105987 MsG0180000297.01.T01:intron 25.0%
! TGTAAATGACTCAGTTATTA+TGG + Chr1:4103217-4103236 None:intergenic 25.0%
! TGTATAATATATGTAAGGTC+TGG - Chr1:4104579-4104598 MsG0180000297.01.T01:intron 25.0%
! TTAAAATGGTAAAAGATTGC+AGG - Chr1:4107634-4107653 MsG0180000297.01.T01:intron 25.0%
! TTCTCTTAATCAATGTCTTA+AGG - Chr1:4103735-4103754 MsG0180000297.01.T01:intron 25.0%
! TTGAAAATCTAAAAGAAGAC+AGG - Chr1:4103021-4103040 MsG0180000297.01.T01:intron 25.0%
! TTGCTATGGATGAAAATTAA+TGG + Chr1:4107570-4107589 None:intergenic 25.0%
! TTGTATCCAAGGATAAAAAA+TGG - Chr1:4105948-4105967 MsG0180000297.01.T01:intron 25.0%
! TTTCAGACTATCAAACATAT+AGG - Chr1:4106334-4106353 MsG0180000297.01.T01:CDS 25.0%
! TTTGGGTATAAGATAAGATT+TGG + Chr1:4106272-4106291 None:intergenic 25.0%
!! AATTGATGAAGAAAAAGCAT+AGG + Chr1:4104493-4104512 None:intergenic 25.0%
!! ATAATTAAATTGATGGCTGT+TGG + Chr1:4105160-4105179 None:intergenic 25.0%
!! CTTAGTTTCCAATTCATTTT+TGG - Chr1:4105485-4105504 MsG0180000297.01.T01:intron 25.0%
!! TAAGTGCTTTTGTTAAGTAT+TGG + Chr1:4103388-4103407 None:intergenic 25.0%
!! TGAAATTATTTGGAGTCATT+CGG - Chr1:4106875-4106894 MsG0180000297.01.T01:intron 25.0%
!! TTCAACTTTTCTATGTAGAT+TGG + Chr1:4103006-4103025 None:intergenic 25.0%
!! TTCCTTATTTACAAGAGTTT+GGG + Chr1:4106289-4106308 None:intergenic 25.0%
!!! AATTCTCGCTTTTACTTAAT+TGG + Chr1:4104441-4104460 None:intergenic 25.0%
!!! ACCGTATGTAAAAAGTATTA+TGG - Chr1:4107413-4107432 MsG0180000297.01.T01:intron 25.0%
!!! AGATTACCATTTTTTATCCT+TGG + Chr1:4105957-4105976 None:intergenic 25.0%
!!! AGGTGTTTTAAATGGAAAAT+GGG - Chr1:4102327-4102346 MsG0180000297.01.T01:CDS 25.0%
!!! ATATATGCCTTTGTGTTTTT+TGG + Chr1:4104625-4104644 None:intergenic 25.0%
!!! GTAAAGGTATTTATGCATTT+TGG - Chr1:4106676-4106695 MsG0180000297.01.T01:intron 25.0%
!!! GTCAAATAGTTGTTGTTTTT+TGG + Chr1:4104158-4104177 None:intergenic 25.0%
!!! TTCTATTTTTATTGATACGG+AGG + Chr1:4106824-4106843 None:intergenic 25.0%
AAAATCTAAAAGAAGACAGG+AGG - Chr1:4103024-4103043 MsG0180000297.01.T01:intron 30.0%
AAAATGTGGTAAAGTGTGTT+GGG - Chr1:4106978-4106997 MsG0180000297.01.T01:intron 30.0%
AAACTATGCGGAAAAAATTG+AGG - Chr1:4107043-4107062 MsG0180000297.01.T01:intron 30.0%
AAATCTAAAAGAAGACAGGA+GGG - Chr1:4103025-4103044 MsG0180000297.01.T01:intron 30.0%
AACACTATGCTTATTTACAG+GGG - Chr1:4106528-4106547 MsG0180000297.01.T01:intron 30.0%
AAGATCTATTGAATCGGTTA+AGG - Chr1:4102615-4102634 MsG0180000297.01.T01:intron 30.0%
AATAGGAGAAAATGCTAGTT+AGG - Chr1:4105528-4105547 MsG0180000297.01.T01:intron 30.0%
AGCTCTTATGAATGTATTGA+CGG + Chr1:4108607-4108626 None:intergenic 30.0%
AGCTTGAAGTTTCATGTAAT+AGG + Chr1:4107845-4107864 None:intergenic 30.0%
AGGTTATTTATAGCCTGTTA+TGG + Chr1:4108815-4108834 None:intergenic 30.0%
ATAGATGTAGGAAAAACTTG+TGG - Chr1:4102448-4102467 MsG0180000297.01.T01:intron 30.0%
ATTAGGGTTTAGTACTGTAT+TGG + Chr1:4108863-4108882 None:intergenic 30.0%
ATTTACATGACAAGCTAAGT+AGG - Chr1:4105205-4105224 MsG0180000297.01.T01:intron 30.0%
CAAAATATGACAGAAAGAGA+GGG - Chr1:4108273-4108292 MsG0180000297.01.T01:intron 30.0%
CAATAACATCAACCATCTTA+AGG - Chr1:4106435-4106454 MsG0180000297.01.T01:intron 30.0%
CCACTATCATAAATACAAAG+TGG + Chr1:4103357-4103376 None:intergenic 30.0%
CCACTTTGTATTTATGATAG+TGG - Chr1:4103354-4103373 MsG0180000297.01.T01:intron 30.0%
CCATCTTAAGGAATGTATTA+AGG - Chr1:4106447-4106466 MsG0180000297.01.T01:intron 30.0%
CCATCTTCATATCAATCAAA+GGG + Chr1:4104776-4104795 None:intergenic 30.0%
CCTTAATACATTCCTTAAGA+TGG + Chr1:4106450-4106469 None:intergenic 30.0%
CCTTTGATTGATATGAAGAT+GGG - Chr1:4104774-4104793 MsG0180000297.01.T01:intron 30.0%
GAAAAGCAATTGTCAATGTT+TGG - Chr1:4105886-4105905 MsG0180000297.01.T01:intron 30.0%
GAATACTTCGTCTTATATAG+TGG + Chr1:4108538-4108557 None:intergenic 30.0%
GAGGAATTACATATTCAAAC+CGG + Chr1:4107681-4107700 None:intergenic 30.0%
GGTTATTTATAGCCTGTTAT+GGG + Chr1:4108814-4108833 None:intergenic 30.0%
GTCTCCTAAATACGTTAAAA+TGG - Chr1:4107620-4107639 MsG0180000297.01.T01:intron 30.0%
TAAAATGTGGTAAAGTGTGT+TGG - Chr1:4106977-4106996 MsG0180000297.01.T01:intron 30.0%
TAATCAATGTCTTAAGGACA+CGG - Chr1:4103741-4103760 MsG0180000297.01.T01:intron 30.0%
TACCCAAACTCTTGTAAATA+AGG - Chr1:4106284-4106303 MsG0180000297.01.T01:CDS 30.0%
TCAAAATATGACAGAAAGAG+AGG - Chr1:4108272-4108291 MsG0180000297.01.T01:intron 30.0%
TCAATACATTCATAAGAGCT+TGG - Chr1:4108607-4108626 MsG0180000297.01.T01:intron 30.0%
TCATATCAAGTGAAAATGAC+CGG - Chr1:4106601-4106620 MsG0180000297.01.T01:intron 30.0%
TGCTTTCAATTCTTGCTAAT+TGG + Chr1:4104674-4104693 None:intergenic 30.0%
TTATTGGTACCAACTTAGTT+AGG + Chr1:4104650-4104669 None:intergenic 30.0%
TTCTCTATTTATTGCTCTGT+TGG - Chr1:4107321-4107340 MsG0180000297.01.T01:intron 30.0%
TTGTATAGACATGCATTAAG+AGG + Chr1:4108235-4108254 None:intergenic 30.0%
TTTGGATCATAGCAATTTCA+TGG - Chr1:4106694-4106713 MsG0180000297.01.T01:intron 30.0%
! AACAATTTTGCCAAACATTG+TGG + Chr1:4105706-4105725 None:intergenic 30.0%
! ATGTTATCTTGACAACCTTT+TGG + Chr1:4104289-4104308 None:intergenic 30.0%
! CTGAAGGGTATAATATAGAA+TGG - Chr1:4102707-4102726 MsG0180000297.01.T01:intron 30.0%
! CTTCCTTATTTACAAGAGTT+TGG + Chr1:4106290-4106309 None:intergenic 30.0%
! GAAATTATTTGGAGTCATTC+GGG - Chr1:4106876-4106895 MsG0180000297.01.T01:intron 30.0%
! GTGTAATTAGAGCAGTTTTA+TGG - Chr1:4102647-4102666 MsG0180000297.01.T01:intron 30.0%
! TTTTACGGTATGCAATCAAT+TGG + Chr1:4104822-4104841 None:intergenic 30.0%
!! GAGGTGTTTTAAATGGAAAA+TGG - Chr1:4102326-4102345 MsG0180000297.01.T01:CDS 30.0%
!! GTTTTAAATGGAAAATGGGA+TGG - Chr1:4102331-4102350 MsG0180000297.01.T01:CDS 30.0%
!! TTGTTTTTCCTCATCATGTA+CGG + Chr1:4106647-4106666 None:intergenic 30.0%
!!! CACATTTTGACTTGGTAAAT+TGG - Chr1:4105292-4105311 MsG0180000297.01.T01:intron 30.0%
!!! GTAATGCTATTTTACTAGTG+CGG - Chr1:4105843-4105862 MsG0180000297.01.T01:intron 30.0%
!!! GTTTTTTAACAAGTGCTCTT+AGG + Chr1:4103671-4103690 None:intergenic 30.0%
!!! TAATGCTATTTTACTAGTGC+GGG - Chr1:4105844-4105863 MsG0180000297.01.T01:intron 30.0%
!!! TGTTTCCCAAACTTTTTTGA+TGG + Chr1:4103157-4103176 None:intergenic 30.0%
AAACTTCAAGCTCAGAATGA+TGG - Chr1:4107853-4107872 MsG0180000297.01.T01:intron 35.0%
AACCTGAATAACAAGAGAGA+TGG + Chr1:4102771-4102790 None:intergenic 35.0%
AATCATGGTCTAATGCAGTT+AGG - Chr1:4105983-4106002 MsG0180000297.01.T01:intron 35.0%
ACACTATGCTTATTTACAGG+GGG - Chr1:4106529-4106548 MsG0180000297.01.T01:intron 35.0%
ACATCTATATCTGCATGAAG+AGG + Chr1:4102436-4102455 None:intergenic 35.0%
ACGGTATAAATATGTGGTGT+TGG - Chr1:4104259-4104278 MsG0180000297.01.T01:intron 35.0%
ACTTAAAAGTCCTCTTTGCT+TGG - Chr1:4108765-4108784 MsG0180000297.01.T01:CDS 35.0%
ACTTCGTCTTATATAGTGGT+TGG + Chr1:4108534-4108553 None:intergenic 35.0%
ACTTGCCATGAAATTACACT+TGG + Chr1:4108332-4108351 None:intergenic 35.0%
AGAATTGAAGAGTGGAGAAA+TGG - Chr1:4102565-4102584 MsG0180000297.01.T01:intron 35.0%
AGCAAGCCTTCAACAAAAAA+AGG - Chr1:4107929-4107948 MsG0180000297.01.T01:intron 35.0%
ATATGTGTGAAATGAGCTAG+CGG - Chr1:4103445-4103464 MsG0180000297.01.T01:intron 35.0%
ATCATGTACGGTCTAATCTA+AGG + Chr1:4106635-4106654 None:intergenic 35.0%
ATGACTCAGTTATTATGGGA+CGG + Chr1:4103212-4103231 None:intergenic 35.0%
CAACAGTAGTTAATTGCCAT+TGG - Chr1:4105776-4105795 MsG0180000297.01.T01:intron 35.0%
CCCATCTTCATATCAATCAA+AGG + Chr1:4104777-4104796 None:intergenic 35.0%
CCCTTTGATTGATATGAAGA+TGG - Chr1:4104773-4104792 MsG0180000297.01.T01:intron 35.0%
CTTAAAAGTCCTCTTTGCTT+GGG - Chr1:4108766-4108785 MsG0180000297.01.T01:CDS 35.0%
CTTCATGCAGATATAGATGT+AGG - Chr1:4102436-4102455 MsG0180000297.01.T01:intron 35.0%
GAAATTGTTAGAATGAGTGG+TGG - Chr1:4102499-4102518 MsG0180000297.01.T01:intron 35.0%
GATTGAACACTATTCCAGAT+GGG + Chr1:4102877-4102896 None:intergenic 35.0%
GCATCAACACATTTGACATT+AGG + Chr1:4105045-4105064 None:intergenic 35.0%
GCCCAATTTAATTGTATCCA+AGG - Chr1:4105937-4105956 MsG0180000297.01.T01:intron 35.0%
GCGTGATGAATGTAAATGAT+AGG - Chr1:4103083-4103102 MsG0180000297.01.T01:intron 35.0%
GGTGAGAAGATCTATTGAAT+CGG - Chr1:4102609-4102628 MsG0180000297.01.T01:intron 35.0%
GTAGCATGAGAATTGTAATG+TGG + Chr1:4108472-4108491 None:intergenic 35.0%
GTTGAAAGACTGTTGAAAAG+TGG - Chr1:4108581-4108600 MsG0180000297.01.T01:intron 35.0%
TAAATGAACCTCAGACATTG+TGG + Chr1:4105106-4105125 None:intergenic 35.0%
TAAGAGAAGAAGATGCTGAA+GGG - Chr1:4102692-4102711 MsG0180000297.01.T01:intron 35.0%
TACAATTAAATTGGGCCAGA+TGG + Chr1:4105933-4105952 None:intergenic 35.0%
TACTAATGTGAGAGAGCAAT+TGG + Chr1:4105740-4105759 None:intergenic 35.0%
TATGCATTTGTGGTCGTATA+TGG - Chr1:4106846-4106865 MsG0180000297.01.T01:intron 35.0%
TATTTAATACGCTAGAACGC+CGG - Chr1:4107659-4107678 MsG0180000297.01.T01:intron 35.0%
TCGATGTCCCAAAAATGAAT+TGG + Chr1:4105496-4105515 None:intergenic 35.0%
TCTATTGAATCGGTTAAGGA+TGG - Chr1:4102619-4102638 MsG0180000297.01.T01:intron 35.0%
TGATGTTATTGCAGCAGAAA+TGG + Chr1:4106426-4106445 None:intergenic 35.0%
TGATTGAACACTATTCCAGA+TGG + Chr1:4102878-4102897 None:intergenic 35.0%
TTCATTTGCAAAAGCAAACC+CGG + Chr1:4102482-4102501 None:intergenic 35.0%
! ACAATGTCTGAGGTTCATTT+AGG - Chr1:4105105-4105124 MsG0180000297.01.T01:intron 35.0%
! GAGGGAGATAATGATTTTGA+GGG + Chr1:4107351-4107370 None:intergenic 35.0%
! GTCAAATGTGTTGATGCTAA+GGG - Chr1:4105048-4105067 MsG0180000297.01.T01:intron 35.0%
! TGTCAAATGTGTTGATGCTA+AGG - Chr1:4105047-4105066 MsG0180000297.01.T01:intron 35.0%
!! AGAGCAGTTTTATGGTATCA+AGG - Chr1:4102655-4102674 MsG0180000297.01.T01:intron 35.0%
!! AGCTTTAAAATTGATGGGCT+TGG + Chr1:4102379-4102398 None:intergenic 35.0%
!! GAGATAATGATTTTGAGGGT+AGG + Chr1:4107347-4107366 None:intergenic 35.0%
!! TGTATTGGTTATGTCTTGAG+AGG + Chr1:4108848-4108867 None:intergenic 35.0%
!! TTCCATCTCTCTTGTTATTC+AGG - Chr1:4102766-4102785 MsG0180000297.01.T01:intron 35.0%
!!! AAAAGGGCTTAGTTTTGCTA+TGG + Chr1:4107584-4107603 None:intergenic 35.0%
!!! CTAGCTCCTTTTTTTGTTGA+AGG + Chr1:4107938-4107957 None:intergenic 35.0%
!!! GAACAACTCACATTTTGACT+TGG - Chr1:4105284-4105303 MsG0180000297.01.T01:intron 35.0%
!!! GTGCTTTTGTTAAGTATTGG+TGG + Chr1:4103385-4103404 None:intergenic 35.0%
!!! TATGCCTTTGTGTTTTTTGG+TGG + Chr1:4104622-4104641 None:intergenic 35.0%
!!! TTTTAGGACTTTACCCCAAA+GGG - Chr1:4108905-4108924 MsG0180000297.01.T01:CDS 35.0%
!!! TTTTTAGGACTTTACCCCAA+AGG - Chr1:4108904-4108923 MsG0180000297.01.T01:CDS 35.0%
AAGGTGAGACATGCTCAATT+GGG - Chr1:4105009-4105028 MsG0180000297.01.T01:intron 40.0%
AATGTGGTATGTCACCTAAC+CGG + Chr1:4105609-4105628 None:intergenic 40.0%
ACATCGACGGGAATATTGAA+TGG - Chr1:4105571-4105590 MsG0180000297.01.T01:intron 40.0%
AGATTAGACCGTACATGATG+AGG - Chr1:4106636-4106655 MsG0180000297.01.T01:intron 40.0%
AGCTAGCGGCTCAATTAATT+CGG - Chr1:4103459-4103478 MsG0180000297.01.T01:intron 40.0%
ATGTACGGTCTAATCTAAGG+TGG + Chr1:4106632-4106651 None:intergenic 40.0%
CAAATAATCACGGTGCAACA+TGG - Chr1:4104741-4104760 MsG0180000297.01.T01:intron 40.0%
CATCGACGGGAATATTGAAT+GGG - Chr1:4105572-4105591 MsG0180000297.01.T01:intron 40.0%
CATTTGTCAGTCGCACAATT+CGG - Chr1:4105244-4105263 MsG0180000297.01.T01:intron 40.0%
CTCTGTTTGAGAGTTTGAAG+AGG + Chr1:4107373-4107392 None:intergenic 40.0%
CTTCTCAATGTAAGAGCCAA+TGG + Chr1:4105795-4105814 None:intergenic 40.0%
GACACCACCAAAAAACACAA+AGG - Chr1:4104615-4104634 MsG0180000297.01.T01:intron 40.0%
GACCACCAAGTGTAATTTCA+TGG - Chr1:4108324-4108343 MsG0180000297.01.T01:intron 40.0%
GGAAGGCAAGTTTATAGAGA+AGG - Chr1:4104990-4105009 MsG0180000297.01.T01:intron 40.0%
GTAAGAGAAGAAGATGCTGA+AGG - Chr1:4102691-4102710 MsG0180000297.01.T01:intron 40.0%
GTAGGAAAAACTTGTGGTGT+TGG - Chr1:4102454-4102473 MsG0180000297.01.T01:intron 40.0%
GTTTGAGAGTTTGAAGAGGA+GGG + Chr1:4107369-4107388 None:intergenic 40.0%
TAGGAGATGTTCGAAGGAAA+TGG - Chr1:4106002-4106021 MsG0180000297.01.T01:intron 40.0%
TCAAAATGCGCCACAATGTT+TGG - Chr1:4105693-4105712 MsG0180000297.01.T01:intron 40.0%
TCATTTGCAAAAGCAAACCC+GGG + Chr1:4102481-4102500 None:intergenic 40.0%
TGCCATGAAATTACACTTGG+TGG + Chr1:4108329-4108348 None:intergenic 40.0%
TGGAATAATCAAGCTCAGCA+TGG - Chr1:4106714-4106733 MsG0180000297.01.T01:intron 40.0%
TGTGCAAGTTGTGATAGACA+CGG - Chr1:4104512-4104531 MsG0180000297.01.T01:intron 40.0%
TGTTTGAGAGTTTGAAGAGG+AGG + Chr1:4107370-4107389 None:intergenic 40.0%
TTTATAGCCTGTTATGGGCT+TGG + Chr1:4108809-4108828 None:intergenic 40.0%
TTTGCTTGGGACTTAAGTCA+CGG - Chr1:4108779-4108798 MsG0180000297.01.T01:CDS 40.0%
! AGTGGTGGTGAATGTGTTAT+AGG - Chr1:4102514-4102533 MsG0180000297.01.T01:intron 40.0%
! CGTGAATCGTCAAAAGCTTT+TGG - Chr1:4106191-4106210 MsG0180000297.01.T01:intron 40.0%
! CTACATTTTGTCGACATCGA+CGG - Chr1:4105558-4105577 MsG0180000297.01.T01:intron 40.0%
! GGAGGGAGATAATGATTTTG+AGG + Chr1:4107352-4107371 None:intergenic 40.0%
! GTAAAGTGTGTTGGGAGTAT+AGG - Chr1:4106986-4107005 MsG0180000297.01.T01:intron 40.0%
! TACATTTTGTCGACATCGAC+GGG - Chr1:4105559-4105578 MsG0180000297.01.T01:intron 40.0%
! TATTTGGAGTCATTCGGGTA+GGG - Chr1:4106881-4106900 MsG0180000297.01.T01:intron 40.0%
! TTATTTGGAGTCATTCGGGT+AGG - Chr1:4106880-4106899 MsG0180000297.01.T01:intron 40.0%
!! GGTGTATTTTGCTACTTGCT+AGG - Chr1:4105907-4105926 MsG0180000297.01.T01:intron 40.0%
!! GTCTTTTTGTCGAGCTCTAA+AGG + Chr1:4108747-4108766 None:intergenic 40.0%
!!! TTGTGTTTTTTGGTGGTGTC+TGG + Chr1:4104615-4104634 None:intergenic 40.0%
ACTCAGTTATTATGGGACGG+AGG + Chr1:4103209-4103228 None:intergenic 45.0%
AGTATAGGATGGGAGGAGAA+GGG - Chr1:4107001-4107020 MsG0180000297.01.T01:intron 45.0%
ATGGCTGTTGGAAGCGAAAT+AGG + Chr1:4105148-4105167 None:intergenic 45.0%
ATGTCTTGAGAGGACTCTCA+AGG + Chr1:4108838-4108857 None:intergenic 45.0%
CGGCTCAATTAATTCGGAAC+GGG - Chr1:4103465-4103484 MsG0180000297.01.T01:intron 45.0%
CTATTTCCAAACCCCCTCTT+AGG + Chr1:4108971-4108990 None:intergenic 45.0%
CTCAAGCCTTCGAGAATTTC+TGG + Chr1:4108938-4108957 None:intergenic 45.0%
CTCAGTTATTATGGGACGGA+GGG + Chr1:4103208-4103227 None:intergenic 45.0%
CTTCAAGCTCAGAATGATGG+TGG - Chr1:4107856-4107875 MsG0180000297.01.T01:intron 45.0%
GAACCTCAGACATTGTGGTA+AGG + Chr1:4105101-4105120 None:intergenic 45.0%
GAAGGTGAGACATGCTCAAT+TGG - Chr1:4105008-4105027 MsG0180000297.01.T01:intron 45.0%
GAATCGGTTAAGGATGGTGA+TGG - Chr1:4102625-4102644 MsG0180000297.01.T01:intron 45.0%
GACTTAAGTCCCAAGCAAAG+AGG + Chr1:4108778-4108797 None:intergenic 45.0%
GCCTCGGTTAAAACCTCATT+AGG - Chr1:4109012-4109031 MsG0180000297.01.T01:CDS 45.0%
GCGGCTCAATTAATTCGGAA+CGG - Chr1:4103464-4103483 MsG0180000297.01.T01:intron 45.0%
GTCCTTCCAGAAATTCTCGA+AGG - Chr1:4108929-4108948 MsG0180000297.01.T01:CDS 45.0%
GTGCAAGTTGTGATAGACAC+GGG - Chr1:4104513-4104532 MsG0180000297.01.T01:intron 45.0%
TAGACACGTCTGGTATGAAG+TGG + Chr1:4107901-4107920 None:intergenic 45.0%
TCACCTTACCACAATGTCTG+AGG - Chr1:4105095-4105114 MsG0180000297.01.T01:intron 45.0%
TCTTGATGCATTCACCCATC+TGG - Chr1:4102860-4102879 MsG0180000297.01.T01:intron 45.0%
TGAATGGGAGGAGAAAATGC+CGG - Chr1:4105587-4105606 MsG0180000297.01.T01:intron 45.0%
TGACAGAAAGAGAGGGTGAT+CGG - Chr1:4108280-4108299 MsG0180000297.01.T01:intron 45.0%
TGCAGTTAGGAGATGTTCGA+AGG - Chr1:4105996-4106015 MsG0180000297.01.T01:intron 45.0%
TGGCTCTTACATTGAGAAGC+CGG - Chr1:4105796-4105815 MsG0180000297.01.T01:intron 45.0%
TTGCTTGGGACTTAAGTCAC+GGG - Chr1:4108780-4108799 MsG0180000297.01.T01:CDS 45.0%
TTGTTCCTTGTGCAGTTGGT+GGG - Chr1:4102539-4102558 MsG0180000297.01.T01:intron 45.0%
! AAAACTTGTGGTGTTGGACC+CGG - Chr1:4102460-4102479 MsG0180000297.01.T01:intron 45.0%
! AGCCTTCGAGAATTTCTGGA+AGG + Chr1:4108934-4108953 None:intergenic 45.0%
! AGTGTGTTGGGAGTATAGGA+TGG - Chr1:4106990-4107009 MsG0180000297.01.T01:intron 45.0%
! ATTTCTGGAAGGACTCCCTT+TGG + Chr1:4108923-4108942 None:intergenic 45.0%
! GTGTGTTGGGAGTATAGGAT+GGG - Chr1:4106991-4107010 MsG0180000297.01.T01:intron 45.0%
! TGTGGTGTTGGACAACCAAA+AGG - Chr1:4104271-4104290 MsG0180000297.01.T01:intron 45.0%
! TTTCTGGAAGGACTCCCTTT+GGG + Chr1:4108922-4108941 None:intergenic 45.0%
!! TGGAAGCACTCTAGCTAGTT+TGG + Chr1:4108364-4108383 None:intergenic 45.0%
!! TTGTGGCGCATTTTGATGTG+TGG + Chr1:4105689-4105708 None:intergenic 45.0%
!!! CGCTCGAGAAGTGTTTTGTA+GGG - Chr1:4107145-4107164 MsG0180000297.01.T01:intron 45.0%
!!! GGTCGAGGAGGTGTTTTAAA+TGG - Chr1:4102319-4102338 MsG0180000297.01.T01:CDS 45.0%
!!! CTTAAAATTTTTATTTTAAA+AGG + Chr1:4107601-4107620 None:intergenic 5.0%
!!! TAAATTTTGTATTTTTATAT+TGG + Chr1:4104183-4104202 None:intergenic 5.0%
AGCTTGGAAGCCCTCCAAAA+GGG - Chr1:4108623-4108642 MsG0180000297.01.T01:intron 50.0%
ATCATGAGGCTAAAGGGGGA+AGG - Chr1:4106157-4106176 MsG0180000297.01.T01:intron 50.0%
ATGCAGGTAGCACTTGCATC+AGG - Chr1:4104967-4104986 MsG0180000297.01.T01:intron 50.0%
CACGATCATGAGGCTAAAGG+GGG - Chr1:4106153-4106172 MsG0180000297.01.T01:intron 50.0%
CCTTTAGCCTCATGATCGTG+CGG + Chr1:4106153-4106172 None:intergenic 50.0%
CGACGGGAATATTGAATGGG+AGG - Chr1:4105575-4105594 MsG0180000297.01.T01:intron 50.0%
CGCACGATCATGAGGCTAAA+GGG - Chr1:4106151-4106170 MsG0180000297.01.T01:intron 50.0%
CTTGTTCCTTGTGCAGTTGG+TGG - Chr1:4102538-4102557 MsG0180000297.01.T01:intron 50.0%
GAGTATAGGATGGGAGGAGA+AGG - Chr1:4107000-4107019 MsG0180000297.01.T01:intron 50.0%
GCACGATCATGAGGCTAAAG+GGG - Chr1:4106152-4106171 MsG0180000297.01.T01:intron 50.0%
GTGGGACGAGAATTGAAGAG+TGG - Chr1:4102557-4102576 MsG0180000297.01.T01:intron 50.0%
GTTATCTCCGCACGATCATG+AGG - Chr1:4106143-4106162 MsG0180000297.01.T01:intron 50.0%
TATGAACAACGCGTAGCGCT+GGG - Chr1:4105356-4105375 MsG0180000297.01.T01:intron 50.0%
TCTTGAGAGGACTCTCAAGG+AGG + Chr1:4108835-4108854 None:intergenic 50.0%
TGCAGGTAGCACTTGCATCA+GGG - Chr1:4104968-4104987 MsG0180000297.01.T01:intron 50.0%
TTATGAACAACGCGTAGCGC+TGG - Chr1:4105355-4105374 MsG0180000297.01.T01:intron 50.0%
! AAACTTGTGGTGTTGGACCC+GGG - Chr1:4102461-4102480 MsG0180000297.01.T01:intron 50.0%
! AGGCTTCTAGAAGCTGACTG+AGG + Chr1:4108727-4108746 None:intergenic 50.0%
! CTAATCTAAGGTGGCGTCTC+CGG + Chr1:4106623-4106642 None:intergenic 50.0%
! CTCTAGAGAGTAGACACGTC+TGG + Chr1:4107911-4107930 None:intergenic 50.0%
! TCAAGCTCAGCATGGCTTGT+TGG - Chr1:4106722-4106741 MsG0180000297.01.T01:intron 50.0%
! TGTTGGGAGTATAGGATGGG+AGG - Chr1:4106994-4107013 MsG0180000297.01.T01:intron 50.0%
! TTCTGGAAGGACTCCCTTTG+GGG + Chr1:4108921-4108940 None:intergenic 50.0%
! TTGCTACTTGCTAGGCCATC+TGG - Chr1:4105915-4105934 MsG0180000297.01.T01:intron 50.0%
!! GAGCTGCTAGCTTGCTCTAA+AGG - Chr1:4108409-4108428 MsG0180000297.01.T01:intron 50.0%
!! GATGGGCTTGGTTTGCATTC+TGG + Chr1:4102367-4102386 None:intergenic 50.0%
!! GGCTTGGTTTGCATTCTGGT+GGG + Chr1:4102363-4102382 None:intergenic 50.0%
!! GGTCTTGTTCCTTGTGCAGT+TGG - Chr1:4102535-4102554 MsG0180000297.01.T01:intron 50.0%
!!! GCGCTCGAGAAGTGTTTTGT+AGG - Chr1:4107144-4107163 MsG0180000297.01.T01:intron 50.0%
AACCAGCAATAGACGCGCCT+CGG - Chr1:4108996-4109015 MsG0180000297.01.T01:CDS 55.0%
ACCAACTGAGCTGAGCTCGT+AGG + Chr1:4104551-4104570 None:intergenic 55.0%
AGTTGCCCCAAGCCTAAGAG+GGG - Chr1:4108956-4108975 MsG0180000297.01.T01:CDS 55.0%
ATAGGATGGGAGGAGAAGGG+AGG - Chr1:4107004-4107023 MsG0180000297.01.T01:intron 55.0%
ATGAACAACGCGTAGCGCTG+GGG - Chr1:4105357-4105376 MsG0180000297.01.T01:intron 55.0%
CAAACCCCCTCTTAGGCTTG+GGG + Chr1:4108964-4108983 None:intergenic 55.0%
CACGGTGCAACATGGAGTCA+TGG - Chr1:4104749-4104768 MsG0180000297.01.T01:intron 55.0%
CAGAAAGAGAGGGTGATCGG+TGG - Chr1:4108283-4108302 MsG0180000297.01.T01:intron 55.0%
CAGCGACAGTTAACTGAGGC+CGG + Chr1:4105818-4105837 None:intergenic 55.0%
CCAAACCCCCTCTTAGGCTT+GGG + Chr1:4108965-4108984 None:intergenic 55.0%
CCAACTGAGCTGAGCTCGTA+GGG + Chr1:4104550-4104569 None:intergenic 55.0%
CCGCACGATCATGAGGCTAA+AGG - Chr1:4106150-4106169 MsG0180000297.01.T01:intron 55.0%
CCTAGGCCCTATAGGCCATT+CGG + Chr1:4108683-4108702 None:intergenic 55.0%
CCTCAGTTAACTGTCGCTGG+GGG - Chr1:4105819-4105838 MsG0180000297.01.T01:intron 55.0%
CGGGAAACCAAGCCCATAAC+AGG - Chr1:4108799-4108818 MsG0180000297.01.T01:CDS 55.0%
GAGCTTGGAAGCCCTCCAAA+AGG - Chr1:4108622-4108641 MsG0180000297.01.T01:intron 55.0%
GAGTTGCCCCAAGCCTAAGA+GGG - Chr1:4108955-4108974 MsG0180000297.01.T01:CDS 55.0%
GATCGGTGGTGTGCAGAGTA+TGG - Chr1:4108297-4108316 MsG0180000297.01.T01:intron 55.0%
GCAGGTAGCACTTGCATCAG+GGG - Chr1:4104969-4104988 MsG0180000297.01.T01:intron 55.0%
GCCCTATAGGCCATTCGGAA+GGG + Chr1:4108678-4108697 None:intergenic 55.0%
GCCCTTCCGAATGGCCTATA+GGG - Chr1:4108674-4108693 MsG0180000297.01.T01:CDS 55.0%
GCCTCAGTTAACTGTCGCTG+GGG - Chr1:4105818-4105837 MsG0180000297.01.T01:intron 55.0%
GGCCTCAGTTAACTGTCGCT+GGG - Chr1:4105817-4105836 MsG0180000297.01.T01:intron 55.0%
GTAGCACTTGCATCAGGGGA+AGG - Chr1:4104973-4104992 MsG0180000297.01.T01:intron 55.0%
TAGGATGGGAGGAGAAGGGA+GGG - Chr1:4107005-4107024 MsG0180000297.01.T01:intron 55.0%
TCCAAACCCCCTCTTAGGCT+TGG + Chr1:4108966-4108985 None:intergenic 55.0%
TGAGTTGCCCCAAGCCTAAG+AGG - Chr1:4108954-4108973 MsG0180000297.01.T01:CDS 55.0%
! ATCCTCGCTGACTAGGCTCA+AGG + Chr1:4106796-4106815 None:intergenic 55.0%
! GGCTTAGATCCTCGCTGACT+AGG + Chr1:4106803-4106822 None:intergenic 55.0%
! GGGAGGAGAAAATGCCGGTT+AGG - Chr1:4105592-4105611 MsG0180000297.01.T01:intron 55.0%
!! GGGCTTGGTTTGCATTCTGG+TGG + Chr1:4102364-4102383 None:intergenic 55.0%
AACCGAGGCGCGTCTATTGC+TGG + Chr1:4109001-4109020 None:intergenic 60.0%
CCCAAGCCTAAGAGGGGGTT+TGG - Chr1:4108962-4108981 MsG0180000297.01.T01:CDS 60.0%
CCCCCAGCGACAGTTAACTG+AGG + Chr1:4105822-4105841 None:intergenic 60.0%
CCCTACGAGCTCAGCTCAGT+TGG - Chr1:4104547-4104566 MsG0180000297.01.T01:intron 60.0%
CCGAATGGCCTATAGGGCCT+AGG - Chr1:4108680-4108699 MsG0180000297.01.T01:CDS 60.0%
CGCCCTTCCGAATGGCCTAT+AGG - Chr1:4108673-4108692 MsG0180000297.01.T01:CDS 60.0%
CGGCCTCAGTTAACTGTCGC+TGG - Chr1:4105816-4105835 MsG0180000297.01.T01:intron 60.0%
CTCGTCCCACCAACTGCACA+AGG + Chr1:4102547-4102566 None:intergenic 60.0%
GAAGCCCTCCAAAAGGGTCC+AGG - Chr1:4108629-4108648 MsG0180000297.01.T01:intron 60.0%
GAGGCTAAAGGGGGAAGGTG+AGG - Chr1:4106162-4106181 MsG0180000297.01.T01:intron 60.0%
GGCCCTATAGGCCATTCGGA+AGG + Chr1:4108679-4108698 None:intergenic 60.0%
GTCCTTGAGCCTAGTCAGCG+AGG - Chr1:4106791-4106810 MsG0180000297.01.T01:intron 60.0%
GTTGCCCCAAGCCTAAGAGG+GGG - Chr1:4108957-4108976 MsG0180000297.01.T01:CDS 60.0%
! GGCTCCTGGACCCTTTTGGA+GGG + Chr1:4108636-4108655 None:intergenic 60.0%
! TGAACAACGCGTAGCGCTGG+GGG - Chr1:4105358-4105377 MsG0180000297.01.T01:intron 60.0%
ACTGAGGCGACGCCCATGGA+AGG + Chr1:4108711-4108730 None:intergenic 65.0%
AGGACGCGCCTAGGCCCTAT+AGG + Chr1:4108691-4108710 None:intergenic 65.0%
AGGAGCCCTCCAAAAGGCCC+AGG - Chr1:4108649-4108668 MsG0180000297.01.T01:intron 65.0%
GCCTAGGCGCGTCCTTCCAT+GGG - Chr1:4108696-4108715 MsG0180000297.01.T01:CDS 65.0%
GGGTCCAGGAGCCCTCCAAA+AGG - Chr1:4108643-4108662 MsG0180000297.01.T01:intron 65.0%
! GGAGGGCTCCTGGACCCTTT+TGG + Chr1:4108640-4108659 None:intergenic 65.0%
! GGCGTCCTGGGCCTTTTGGA+GGG + Chr1:4108657-4108676 None:intergenic 65.0%
! GGGCTCCTGGACCCTTTTGG+AGG + Chr1:4108637-4108656 None:intergenic 65.0%
!! GCCATTCGGAAGGGCGTCCT+GGG + Chr1:4108669-4108688 None:intergenic 65.0%
!! TGGGCCTTTTGGAGGGCTCC+TGG + Chr1:4108650-4108669 None:intergenic 65.0%
!!! GAAGGGCGTCCTGGGCCTTT+TGG + Chr1:4108661-4108680 None:intergenic 65.0%
GCCCAGGACGCCCTTCCGAA+TGG - Chr1:4108665-4108684 MsG0180000297.01.T01:CDS 70.0%
GCCCATGGAAGGACGCGCCT+AGG + Chr1:4108700-4108719 None:intergenic 70.0%
GCTGACTGAGGCGACGCCCA+TGG + Chr1:4108715-4108734 None:intergenic 70.0%
GGCCTAGGCGCGTCCTTCCA+TGG - Chr1:4108695-4108714 MsG0180000297.01.T01:CDS 70.0%
! GGGCGTCCTGGGCCTTTTGG+AGG + Chr1:4108658-4108677 None:intergenic 70.0%
!! GGCCATTCGGAAGGGCGTCC+TGG + Chr1:4108670-4108689 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 4102313 4109033 4102313 ID=MsG0180000297.01;Name=MsG0180000297.01
Chr1 mRNA 4102313 4109033 4102313 ID=MsG0180000297.01.T01;Parent=MsG0180000297.01;Name=MsG0180000297.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0|0|0.66|1|1|3|0|214
Chr1 exon 4108656 4109033 4108656 ID=MsG0180000297.01.T01:exon:5672;Parent=MsG0180000297.01.T01
Chr1 exon 4106230 4106373 4106230 ID=MsG0180000297.01.T01:exon:5673;Parent=MsG0180000297.01.T01
Chr1 exon 4102313 4102435 4102313 ID=MsG0180000297.01.T01:exon:5674;Parent=MsG0180000297.01.T01
Chr1 CDS 4108656 4109033 4108656 ID=MsG0180000297.01.T01:cds;Parent=MsG0180000297.01.T01
Chr1 CDS 4106230 4106373 4106230 ID=MsG0180000297.01.T01:cds;Parent=MsG0180000297.01.T01
Chr1 CDS 4102313 4102435 4102313 ID=MsG0180000297.01.T01:cds;Parent=MsG0180000297.01.T01
Gene Sequence

>MsG0180000297.01.T01

ATGGCTGGTCGAGGAGGTGTTTTAAATGGAAAATGGGATGGTAATATCCCACCAGAATGCAAACCAAGCCCATCAATTTTAAAGCTAAATACAAAACTCAAATGGGAAGAAGCTCATGAGCCTCTTCATGCAGATATAGATGTAGGAAAAACTTGTGGTGTTGGACCCGGGTTTGCTTTTGCAAATGAAATTGTTAGAATGAGTGGTGGTGAATGTGTTATAGGTCTTGTTCCTTGTGCAGTTGGTGGGACGAGAATTGAAGAGTGGAGAAATGGATCACATTTGTATAATGAATTGGTGAGAAGATCTATTGAATCGGTTAAGGATGGTGATGGTGTAATTAGAGCAGTTTTATGGTATCAAGGTGAGAGTGATACTGTAGCACTTGCATCAGGGGAAGGCAAGTTTATAGAGAAGGTGAGACATGCTCAATTGGGTATCAAACTTCCTAATGTCAAATGTGTTGATGCTAAGGGATTGCATCTCAAGACAGATAAACTTCACCTTACCACAATGTCTGAGGACTTTACCCCAAAGGGAGTCCTTCCAGAAATTCTCGAAGGCTTGAGTTGCCCCAAGCCTAAGAGGGGGTTTGGAAATAGTTTTCAACCAGCAATAGACGCGCCTCGGTTAAAACCTCATTAG
Protein sequence

>MsG0180000297.01.T01

MAGRGGVLNGKWDGNIPPECKPSPSILKLNTKLKWEEAHEPLHADIDVGKTCGVGPGFAFANEIVRMSGGECVIGLVPCAVGGTRIEEWRNGSHLYNELVRRSIESVKDGDGVIRAVLWYQGESDTVALASGEGKFIEKVRHAQLGIKLPNVKCVDAKGLHLKTDKLHLTTMSEDFTPKGVLPEILEGLSCPKPKRGFGNSFQPAIDAPRLKPH*