Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001107.01.T01 | RDX64233.1 | 78.571 | 154 | 32 | 1 | 1 | 154 | 1 | 153 | 1.66E-82 | 249 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001107.01.T01 | Q9SSK5 | 37.662 | 154 | 93 | 2 | 2 | 154 | 6 | 157 | 2.41E-33 | 118 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001107.01.T01 | A0A371EDW4 | 78.571 | 154 | 32 | 1 | 1 | 154 | 1 | 153 | 7.95e-83 | 249 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|---|---|
MsG0180001107.01 | MsG0080048633.01 | PPI |
MsG0880043953.01 | MsG0180001107.01 | PPI |
MsG0180001100.01 | MsG0180001107.01 | PPI |
MsG0880043941.01 | MsG0180001107.01 | PPI |
MsG0180001107.01 | MsG0580025828.01 | PPI |
MsG0180001109.01 | MsG0180001107.01 | PPI |
MsG0080048633.01 | MsG0180001107.01 | PPI |
MsG0180001108.01 | MsG0180001107.01 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001107.01.T01 | MTR_1g030820 | 74.675 | 154 | 38 | 1 | 1 | 154 | 1 | 153 | 2.28e-84 | 244 |
MsG0180001107.01.T01 | MTR_1g030810 | 72.078 | 154 | 42 | 1 | 1 | 154 | 1 | 153 | 1.85e-80 | 234 |
MsG0180001107.01.T01 | MTR_1g030840 | 60.897 | 156 | 55 | 2 | 1 | 151 | 1 | 155 | 1.50e-60 | 184 |
MsG0180001107.01.T01 | MTR_8g045570 | 42.857 | 154 | 84 | 3 | 1 | 153 | 1 | 151 | 3.17e-41 | 135 |
MsG0180001107.01.T01 | MTR_8g045555 | 41.558 | 154 | 86 | 3 | 1 | 153 | 1 | 151 | 1.41e-40 | 134 |
MsG0180001107.01.T01 | MTR_8g045300 | 44.516 | 155 | 82 | 3 | 1 | 154 | 1 | 152 | 5.06e-39 | 130 |
MsG0180001107.01.T01 | MTR_8g045400 | 42.857 | 154 | 83 | 4 | 1 | 153 | 1 | 150 | 5.66e-39 | 129 |
MsG0180001107.01.T01 | MTR_8g045490 | 42.208 | 154 | 85 | 3 | 1 | 153 | 1 | 151 | 3.13e-38 | 127 |
MsG0180001107.01.T01 | MTR_8g045520 | 41.935 | 155 | 86 | 3 | 1 | 154 | 1 | 152 | 7.45e-38 | 127 |
MsG0180001107.01.T01 | MTR_8g045695 | 41.558 | 154 | 85 | 4 | 1 | 153 | 1 | 150 | 9.09e-38 | 126 |
MsG0180001107.01.T01 | MTR_8g045560 | 40.260 | 154 | 87 | 4 | 1 | 153 | 1 | 150 | 3.88e-36 | 122 |
MsG0180001107.01.T01 | MTR_8g045640 | 39.610 | 154 | 88 | 4 | 1 | 153 | 1 | 150 | 3.27e-35 | 120 |
MsG0180001107.01.T01 | MTR_8g045735 | 38.312 | 154 | 90 | 4 | 1 | 153 | 1 | 150 | 5.85e-35 | 119 |
MsG0180001107.01.T01 | MTR_8g045665 | 37.662 | 154 | 91 | 4 | 1 | 153 | 1 | 150 | 1.03e-33 | 116 |
MsG0180001107.01.T01 | MTR_8g012550 | 36.242 | 149 | 92 | 2 | 6 | 154 | 8 | 153 | 1.83e-30 | 108 |
MsG0180001107.01.T01 | MTR_1g031640 | 36.486 | 148 | 85 | 4 | 7 | 153 | 7 | 146 | 1.31e-28 | 103 |
MsG0180001107.01.T01 | MTR_5g035010 | 29.412 | 153 | 102 | 4 | 1 | 151 | 3 | 151 | 7.26e-14 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001107.01.T01 | AT5G28010 | 40.260 | 154 | 89 | 2 | 2 | 154 | 14 | 165 | 1.84e-37 | 126 |
MsG0180001107.01.T01 | AT5G28010 | 40.260 | 154 | 89 | 2 | 2 | 154 | 14 | 165 | 1.84e-37 | 126 |
MsG0180001107.01.T01 | AT1G70890 | 37.662 | 154 | 93 | 2 | 2 | 154 | 6 | 157 | 2.45e-34 | 118 |
MsG0180001107.01.T01 | AT1G70830 | 38.312 | 154 | 92 | 2 | 2 | 154 | 21 | 172 | 1.31e-33 | 116 |
MsG0180001107.01.T01 | AT1G70840 | 37.662 | 154 | 93 | 2 | 2 | 154 | 19 | 170 | 1.88e-33 | 116 |
MsG0180001107.01.T01 | AT1G70830 | 38.312 | 154 | 92 | 2 | 2 | 154 | 21 | 172 | 3.31e-33 | 116 |
MsG0180001107.01.T01 | AT1G70830 | 38.312 | 154 | 92 | 2 | 2 | 154 | 21 | 172 | 1.21e-32 | 116 |
MsG0180001107.01.T01 | AT1G70830 | 38.312 | 154 | 92 | 2 | 2 | 154 | 21 | 172 | 5.48e-32 | 116 |
MsG0180001107.01.T01 | AT1G70830 | 37.662 | 154 | 93 | 2 | 2 | 154 | 183 | 334 | 9.93e-31 | 113 |
MsG0180001107.01.T01 | AT1G70850 | 36.184 | 152 | 94 | 2 | 2 | 152 | 8 | 157 | 1.23e-31 | 113 |
MsG0180001107.01.T01 | AT5G28000 | 36.364 | 154 | 95 | 2 | 2 | 154 | 12 | 163 | 1.52e-31 | 111 |
MsG0180001107.01.T01 | AT1G70830 | 37.662 | 154 | 93 | 2 | 2 | 154 | 136 | 287 | 2.98e-31 | 114 |
MsG0180001107.01.T01 | AT1G70830 | 38.043 | 92 | 54 | 2 | 64 | 154 | 36 | 125 | 8.76e-16 | 72.8 |
MsG0180001107.01.T01 | AT1G70850 | 36.184 | 152 | 94 | 2 | 2 | 152 | 8 | 157 | 6.46e-31 | 113 |
MsG0180001107.01.T01 | AT1G70850 | 37.762 | 143 | 86 | 2 | 13 | 154 | 175 | 315 | 2.06e-29 | 109 |
MsG0180001107.01.T01 | AT1G70850 | 36.184 | 152 | 94 | 2 | 2 | 152 | 8 | 157 | 6.46e-31 | 113 |
MsG0180001107.01.T01 | AT1G70850 | 37.762 | 143 | 86 | 2 | 13 | 154 | 175 | 315 | 2.06e-29 | 109 |
MsG0180001107.01.T01 | AT1G70880 | 35.065 | 154 | 97 | 2 | 2 | 154 | 7 | 158 | 3.55e-29 | 105 |
MsG0180001107.01.T01 | AT1G14930 | 33.987 | 153 | 98 | 2 | 1 | 153 | 1 | 150 | 4.11e-24 | 92.0 |
MsG0180001107.01.T01 | AT1G23130 | 32.468 | 154 | 100 | 3 | 2 | 154 | 9 | 159 | 6.18e-24 | 91.7 |
MsG0180001107.01.T01 | AT1G35260 | 31.081 | 148 | 96 | 4 | 7 | 152 | 6 | 149 | 1.98e-23 | 90.1 |
MsG0180001107.01.T01 | AT1G70870 | 36.054 | 147 | 77 | 6 | 7 | 153 | 9 | 138 | 4.08e-23 | 89.0 |
MsG0180001107.01.T01 | AT1G23120 | 31.081 | 148 | 95 | 4 | 7 | 154 | 7 | 147 | 1.30e-21 | 85.5 |
MsG0180001107.01.T01 | AT1G23120 | 31.081 | 148 | 95 | 4 | 7 | 154 | 57 | 197 | 2.62e-21 | 85.9 |
MsG0180001107.01.T01 | AT1G14960 | 29.412 | 153 | 105 | 2 | 1 | 153 | 1 | 150 | 1.36e-20 | 82.8 |
MsG0180001107.01.T01 | AT1G14940 | 30.263 | 152 | 103 | 2 | 1 | 152 | 1 | 149 | 4.85e-20 | 81.6 |
MsG0180001107.01.T01 | AT1G30990 | 29.605 | 152 | 103 | 2 | 1 | 152 | 1 | 148 | 5.83e-20 | 81.3 |
MsG0180001107.01.T01 | AT4G14060 | 28.758 | 153 | 106 | 2 | 1 | 153 | 1 | 150 | 1.04e-18 | 77.8 |
MsG0180001107.01.T01 | AT1G14950 | 28.758 | 153 | 106 | 2 | 1 | 153 | 1 | 150 | 1.81e-18 | 77.4 |
MsG0180001107.01.T01 | AT2G01520 | 28.105 | 153 | 107 | 2 | 1 | 153 | 1 | 150 | 3.55e-18 | 76.6 |
MsG0180001107.01.T01 | AT1G24020 | 33.333 | 156 | 98 | 4 | 1 | 154 | 1 | 152 | 2.49e-17 | 74.3 |
MsG0180001107.01.T01 | AT1G24020 | 33.333 | 156 | 98 | 4 | 1 | 154 | 1 | 152 | 2.49e-17 | 74.3 |
MsG0180001107.01.T01 | AT1G35310 | 29.371 | 143 | 96 | 4 | 13 | 154 | 12 | 150 | 5.76e-17 | 73.6 |
MsG0180001107.01.T01 | AT3G26450 | 26.623 | 154 | 109 | 3 | 1 | 153 | 1 | 151 | 2.28e-16 | 72.0 |
MsG0180001107.01.T01 | AT2G01530 | 28.758 | 153 | 106 | 2 | 1 | 153 | 1 | 150 | 4.00e-16 | 71.2 |
MsG0180001107.01.T01 | AT4G23670 | 28.758 | 153 | 106 | 2 | 1 | 153 | 1 | 150 | 2.15e-15 | 69.3 |
MsG0180001107.01.T01 | AT4G23680 | 27.451 | 153 | 108 | 2 | 1 | 153 | 1 | 150 | 2.03e-14 | 66.6 |
MsG0180001107.01.T01 | AT3G26460 | 25.974 | 154 | 110 | 3 | 1 | 153 | 1 | 151 | 7.71e-14 | 65.1 |
Find 33 sgRNAs with CRISPR-Local
Find 45 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTATTTCTGTAGAGATATT+TGG | 0.208083 | 1:-16080226 | None:intergenic |
TCCATCTCCTGATTCATTCT+TGG | 0.298701 | 1:+16081130 | MsG0180001107.01.T01:CDS |
TGAGAGTTACAAGAGTTTAA+AGG | 0.317745 | 1:+16081019 | MsG0180001107.01.T01:CDS |
GACTATAGATGATGACAATA+AGG | 0.378498 | 1:+16080962 | MsG0180001107.01.T01:CDS |
GCAAATTCCAAGAATGAATC+AGG | 0.409285 | 1:-16081137 | None:intergenic |
AAACTAAAGGAGGATATTAC+AGG | 0.410116 | 1:+16081107 | MsG0180001107.01.T01:CDS |
AAACACTGGGAATGTACAAT+AGG | 0.416951 | 1:+16080298 | MsG0180001107.01.T01:CDS |
ATTACATATAGCGTCTTTGA+TGG | 0.431153 | 1:+16080987 | MsG0180001107.01.T01:CDS |
TAGAGTGCATGAAGGTGATT+GGG | 0.452844 | 1:+16080258 | MsG0180001107.01.T01:CDS |
GTAGAGTGCATGAAGGTGAT+TGG | 0.455183 | 1:+16080257 | MsG0180001107.01.T01:CDS |
AGCATAAATATGTCTTTAAG+TGG | 0.457892 | 1:+16080124 | None:intergenic |
TATGTCTTTAAGTGGGAAAG+TGG | 0.466560 | 1:+16080132 | None:intergenic |
ATGGTGGTGGGAATGTGAAA+TGG | 0.472646 | 1:+16081069 | MsG0180001107.01.T01:CDS |
ATTCTTGGAATTTGCTGCAA+AGG | 0.478866 | 1:+16081145 | MsG0180001107.01.T01:CDS |
TTACATATAGCGTCTTTGAT+GGG | 0.493542 | 1:+16080988 | MsG0180001107.01.T01:CDS |
AGCGTCTTTGATGGGGAAGC+GGG | 0.497447 | 1:+16080996 | MsG0180001107.01.T01:CDS |
ATGTTGGTTCTGTTAAACAC+TGG | 0.536822 | 1:+16080284 | MsG0180001107.01.T01:CDS |
TGTTGGTTCTGTTAAACACT+GGG | 0.537110 | 1:+16080285 | MsG0180001107.01.T01:CDS |
TAGCGTCTTTGATGGGGAAG+CGG | 0.547611 | 1:+16080995 | MsG0180001107.01.T01:CDS |
TATTGATGCTCATCTTATCA+AGG | 0.554137 | 1:+16081178 | MsG0180001107.01.T01:CDS |
TCCAAGAATGAATCAGGAGA+TGG | 0.563426 | 1:-16081131 | None:intergenic |
ATTGATAACGAACATGGTGG+TGG | 0.580253 | 1:+16081056 | MsG0180001107.01.T01:CDS |
TACATATAGCGTCTTTGATG+GGG | 0.593191 | 1:+16080989 | MsG0180001107.01.T01:CDS |
GCATAAATATGTCTTTAAGT+GGG | 0.599699 | 1:+16080125 | None:intergenic |
GAAGGTGATTGGGAAAATGT+TGG | 0.613283 | 1:+16080268 | MsG0180001107.01.T01:CDS |
TCTACAGAAATAGTGCATGA+AGG | 0.618856 | 1:+16080235 | MsG0180001107.01.T01:CDS |
TGAGTATGAGAAACTAAAGG+AGG | 0.619135 | 1:+16081097 | MsG0180001107.01.T01:CDS |
CAAGTGATTGATAACGAACA+TGG | 0.619183 | 1:+16081050 | MsG0180001107.01.T01:CDS |
GTCTTTAAGTGGGAAAGTGG+AGG | 0.619593 | 1:+16080135 | MsG0180001107.01.T01:CDS |
ATATCATAGAATTTAGCAGT+AGG | 0.629215 | 1:-16080178 | None:intergenic |
TTGATAACGAACATGGTGGT+GGG | 0.662118 | 1:+16081057 | MsG0180001107.01.T01:CDS |
CATGAAGGTAGAGTGCATGA+AGG | 0.708400 | 1:+16080250 | MsG0180001107.01.T01:CDS |
GTGATTGATAACGAACATGG+TGG | 0.823091 | 1:+16081053 | MsG0180001107.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATGATTTTTACTTATATTT+TGG | + | Chr1:16080696-16080715 | MsG0180001107.01.T01:intron | 10.0% |
!! | TGAATTTCAATATATTTGAA+AGG | + | Chr1:16080620-16080639 | MsG0180001107.01.T01:intron | 15.0% |
!!! | AAATTTACATATGTTTTGAA+AGG | - | Chr1:16080491-16080510 | None:intergenic | 15.0% |
!! | TTTGAAAGGTAATTTAACTA+CGG | - | Chr1:16080653-16080634 | None:intergenic | 20.0% |
!!! | AAAAAGTATATTACTCACAT+AGG | - | Chr1:16080673-16080692 | None:intergenic | 20.0% |
! | AGATTGCTGAAAATTCATTT+AGG | + | Chr1:16080569-16080588 | MsG0180001107.01.T01:intron | 25.0% |
! | AGCAATCTTAATGTTTACTT+TGG | - | Chr1:16080557-16080576 | None:intergenic | 25.0% |
! | ATATCATAGAATTTAGCAGT+AGG | - | Chr1:16080181-16080200 | None:intergenic | 25.0% |
! | GATTGCTGAAAATTCATTTA+GGG | + | Chr1:16080570-16080589 | MsG0180001107.01.T01:intron | 25.0% |
!!! | ACTATTTCTGTAGAGATATT+TGG | - | Chr1:16080229-16080248 | None:intergenic | 25.0% |
!!! | TTTTGAGTATGAGAAACTAA+AGG | + | Chr1:16081094-16081113 | MsG0180001107.01.T01:CDS | 25.0% |
AAACTAAAGGAGGATATTAC+AGG | + | Chr1:16081107-16081126 | MsG0180001107.01.T01:CDS | 30.0% | |
AGATTGCTCAGAATTCATTT+AGG | + | Chr1:16080426-16080445 | MsG0180001107.01.T01:intron | 30.0% | |
ATTACATATAGCGTCTTTGA+TGG | + | Chr1:16080987-16081006 | MsG0180001107.01.T01:CDS | 30.0% | |
GACTATAGATGATGACAATA+AGG | + | Chr1:16080962-16080981 | MsG0180001107.01.T01:CDS | 30.0% | |
GATTGCTCAGAATTCATTTA+GGG | + | Chr1:16080427-16080446 | MsG0180001107.01.T01:intron | 30.0% | |
TATTGATGCTCATCTTATCA+AGG | + | Chr1:16081178-16081197 | MsG0180001107.01.T01:CDS | 30.0% | |
TGAGAGTTACAAGAGTTTAA+AGG | + | Chr1:16081019-16081038 | MsG0180001107.01.T01:CDS | 30.0% | |
TTACATATAGCGTCTTTGAT+GGG | + | Chr1:16080988-16081007 | MsG0180001107.01.T01:CDS | 30.0% | |
! | ATTCATTTAGGGCATTATTG+TGG | + | Chr1:16080438-16080457 | MsG0180001107.01.T01:intron | 30.0% |
!!! | TTTGTTTTTTTCCTTCTGCA+TGG | - | Chr1:16080923-16080942 | None:intergenic | 30.0% |
AAACACTGGGAATGTACAAT+AGG | + | Chr1:16080298-16080317 | MsG0180001107.01.T01:CDS | 35.0% | |
GAAAGGTAATTTAACTACGG+TGG | - | Chr1:16080474-16080493 | None:intergenic | 35.0% | |
GCAAATTCCAAGAATGAATC+AGG | - | Chr1:16081140-16081159 | None:intergenic | 35.0% | |
TACATATAGCGTCTTTGATG+GGG | + | Chr1:16080989-16081008 | MsG0180001107.01.T01:CDS | 35.0% | |
TCTACAGAAATAGTGCATGA+AGG | + | Chr1:16080235-16080254 | MsG0180001107.01.T01:CDS | 35.0% | |
TGAGTATGAGAAACTAAAGG+AGG | + | Chr1:16081097-16081116 | MsG0180001107.01.T01:CDS | 35.0% | |
!! | ATGTTGGTTCTGTTAAACAC+TGG | + | Chr1:16080284-16080303 | MsG0180001107.01.T01:CDS | 35.0% |
!! | ATTCTTGGAATTTGCTGCAA+AGG | + | Chr1:16081145-16081164 | MsG0180001107.01.T01:CDS | 35.0% |
!! | CAAGTGATTGATAACGAACA+TGG | + | Chr1:16081050-16081069 | MsG0180001107.01.T01:CDS | 35.0% |
!! | TGTTGGTTCTGTTAAACACT+GGG | + | Chr1:16080285-16080304 | MsG0180001107.01.T01:CDS | 35.0% |
GAAGGTGATTGGGAAAATGT+TGG | + | Chr1:16080268-16080287 | MsG0180001107.01.T01:CDS | 40.0% | |
TAGAGTGCATGAAGGTGATT+GGG | + | Chr1:16080258-16080277 | MsG0180001107.01.T01:CDS | 40.0% | |
TCCAAGAATGAATCAGGAGA+TGG | - | Chr1:16081134-16081153 | None:intergenic | 40.0% | |
TCCATCTCCTGATTCATTCT+TGG | + | Chr1:16081130-16081149 | MsG0180001107.01.T01:CDS | 40.0% | |
!! | ATTGATAACGAACATGGTGG+TGG | + | Chr1:16081056-16081075 | MsG0180001107.01.T01:CDS | 40.0% |
!! | GTGATTGATAACGAACATGG+TGG | + | Chr1:16081053-16081072 | MsG0180001107.01.T01:CDS | 40.0% |
!! | TTGATAACGAACATGGTGGT+GGG | + | Chr1:16081057-16081076 | MsG0180001107.01.T01:CDS | 40.0% |
CATGAAGGTAGAGTGCATGA+AGG | + | Chr1:16080250-16080269 | MsG0180001107.01.T01:CDS | 45.0% | |
GTAGAGTGCATGAAGGTGAT+TGG | + | Chr1:16080257-16080276 | MsG0180001107.01.T01:CDS | 45.0% | |
GTCTTTAAGTGGGAAAGTGG+AGG | + | Chr1:16080135-16080154 | MsG0180001107.01.T01:CDS | 45.0% | |
!! | ATGGTGGTGGGAATGTGAAA+TGG | + | Chr1:16081069-16081088 | MsG0180001107.01.T01:CDS | 45.0% |
TACGTGCGAATCCATGCAGA+AGG | + | Chr1:16080909-16080928 | MsG0180001107.01.T01:intron | 50.0% | |
TAGCGTCTTTGATGGGGAAG+CGG | + | Chr1:16080995-16081014 | MsG0180001107.01.T01:CDS | 50.0% | |
AGCGTCTTTGATGGGGAAGC+GGG | + | Chr1:16080996-16081015 | MsG0180001107.01.T01:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 16080133 | 16081205 | 16080133 | ID=MsG0180001107.01;Name=MsG0180001107.01 |
Chr1 | mRNA | 16080133 | 16081205 | 16080133 | ID=MsG0180001107.01.T01;Parent=MsG0180001107.01;Name=MsG0180001107.01.T01;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|1|1|2|0|154 |
Chr1 | exon | 16080133 | 16080319 | 16080133 | ID=MsG0180001107.01.T01:exon:31194;Parent=MsG0180001107.01.T01 |
Chr1 | exon | 16080928 | 16081205 | 16080928 | ID=MsG0180001107.01.T01:exon:31195;Parent=MsG0180001107.01.T01 |
Chr1 | CDS | 16080133 | 16080319 | 16080133 | ID=MsG0180001107.01.T01:cds;Parent=MsG0180001107.01.T01 |
Chr1 | CDS | 16080928 | 16081205 | 16080928 | ID=MsG0180001107.01.T01:cds;Parent=MsG0180001107.01.T01 |
Gene Sequence |
Protein sequence |