AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043941.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043941.01.T01 MTR_8g045400 92.357 157 11 1 70 226 1 156 3.75e-104 298
MsG0880043941.01.T01 MTR_8g045520 80.255 157 31 0 70 226 1 157 4.70e-91 265
MsG0880043941.01.T01 MTR_8g045490 78.344 157 33 1 70 226 1 156 8.93e-90 261
MsG0880043941.01.T01 MTR_8g045695 75.159 157 38 1 70 226 1 156 3.13e-85 250
MsG0880043941.01.T01 MTR_8g045640 75.159 157 38 1 70 226 1 156 1.10e-81 241
MsG0880043941.01.T01 MTR_8g045665 73.248 157 41 1 70 226 1 156 5.43e-81 239
MsG0880043941.01.T01 MTR_8g045735 72.258 155 42 1 70 224 1 154 9.92e-81 238
MsG0880043941.01.T01 MTR_8g045560 73.248 157 41 1 70 226 1 156 1.66e-80 238
MsG0880043941.01.T01 MTR_8g045570 71.711 152 43 0 70 221 1 152 2.59e-80 237
MsG0880043941.01.T01 MTR_8g045300 70.513 156 46 0 70 225 1 156 7.93e-80 236
MsG0880043941.01.T01 MTR_8g045555 71.053 152 44 0 70 221 1 152 9.78e-79 233
MsG0880043941.01.T01 MTR_1g030820 37.908 153 92 2 70 220 1 152 8.18e-37 127
MsG0880043941.01.T01 MTR_1g030810 39.216 153 90 2 70 220 1 152 3.19e-36 125
MsG0880043941.01.T01 MTR_1g030840 37.580 157 88 5 70 218 1 155 1.20e-27 103
MsG0880043941.01.T01 MTR_8g012550 34.247 146 93 3 75 219 8 151 4.89e-25 96.7
MsG0880043941.01.T01 MTR_1g031640 37.162 148 84 4 76 221 7 147 2.33e-23 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043941.01.T01 AT5G28010 35.333 150 94 3 72 219 15 163 6.23e-26 99.4
MsG0880043941.01.T01 AT5G28010 35.333 150 94 3 72 219 15 163 6.23e-26 99.4
MsG0880043941.01.T01 AT1G70890 37.333 150 91 3 72 219 7 155 6.60e-25 96.3
MsG0880043941.01.T01 AT1G70840 35.333 150 94 3 72 219 20 168 2.23e-24 95.5
MsG0880043941.01.T01 AT1G70830 36.667 150 92 3 72 219 22 170 7.52e-24 94.0
MsG0880043941.01.T01 AT1G70830 36.667 150 92 3 72 219 22 170 1.97e-23 93.6
MsG0880043941.01.T01 AT1G70830 36.667 150 92 3 72 219 22 170 6.96e-23 93.6
MsG0880043941.01.T01 AT1G70830 36.667 150 92 3 72 219 22 170 1.77e-22 94.0
MsG0880043941.01.T01 AT1G70830 35.333 150 94 3 72 219 184 332 6.36e-21 89.7
MsG0880043941.01.T01 AT5G28000 34.000 150 96 3 72 219 13 161 1.99e-22 90.1
MsG0880043941.01.T01 AT1G70850 34.667 150 95 3 72 219 9 157 7.43e-22 90.5
MsG0880043941.01.T01 AT1G70830 35.333 150 94 3 72 219 137 285 1.21e-21 90.9
MsG0880043941.01.T01 AT1G70830 33.333 93 61 1 128 219 31 123 1.11e-11 63.5
MsG0880043941.01.T01 AT1G70850 34.667 150 95 3 72 219 9 157 2.70e-21 90.5
MsG0880043941.01.T01 AT1G70850 35.714 140 87 3 82 219 175 313 3.41e-20 87.4
MsG0880043941.01.T01 AT1G70850 34.667 150 95 3 72 219 9 157 2.70e-21 90.5
MsG0880043941.01.T01 AT1G70850 35.714 140 87 3 82 219 175 313 3.41e-20 87.4
MsG0880043941.01.T01 AT1G23130 29.530 149 103 2 72 219 10 157 2.34e-19 82.0
MsG0880043941.01.T01 AT1G23120 27.333 150 104 3 70 219 51 195 1.99e-18 80.5
MsG0880043941.01.T01 AT4G23670 32.680 153 100 3 70 221 1 151 2.14e-18 79.3
MsG0880043941.01.T01 AT1G70880 30.667 150 101 3 72 219 8 156 2.93e-18 79.0
MsG0880043941.01.T01 AT1G70870 39.175 97 58 1 124 220 43 138 3.13e-18 78.6
MsG0880043941.01.T01 AT1G23120 27.333 150 104 3 70 219 1 145 3.33e-18 78.6
MsG0880043941.01.T01 AT1G14930 28.025 157 110 3 70 225 1 155 1.31e-16 74.7
MsG0880043941.01.T01 AT2G01520 29.412 153 105 3 70 221 1 151 2.14e-16 73.9
MsG0880043941.01.T01 AT4G14060 29.412 153 105 3 70 221 1 151 1.73e-15 71.6
MsG0880043941.01.T01 AT2G01530 30.065 153 104 3 70 221 1 151 1.77e-15 71.2
MsG0880043941.01.T01 AT1G35260 27.815 151 105 3 71 219 1 149 2.11e-15 71.2
MsG0880043941.01.T01 AT4G23680 28.289 152 106 3 70 220 1 150 8.84e-15 69.7
MsG0880043941.01.T01 AT1G14940 27.389 157 111 3 70 225 1 155 6.58e-14 67.4
MsG0880043941.01.T01 AT1G14950 28.025 157 110 3 70 225 1 155 1.20e-13 66.6
MsG0880043941.01.T01 AT1G30990 29.801 151 102 4 70 219 1 148 1.34e-13 66.2
MsG0880043941.01.T01 AT3G26450 29.221 154 105 4 70 221 1 152 4.03e-13 65.1
MsG0880043941.01.T01 AT1G35310 25.180 139 101 3 82 219 12 148 2.55e-12 62.8
MsG0880043941.01.T01 AT1G24020 29.605 152 105 2 70 220 1 151 2.68e-12 63.2
MsG0880043941.01.T01 AT1G24020 29.605 152 105 2 70 220 1 151 2.68e-12 63.2
MsG0880043941.01.T01 AT1G14960 27.632 152 107 3 70 220 1 150 6.63e-11 59.3
MsG0880043941.01.T01 AT3G26460 29.487 156 102 5 70 221 1 152 8.05e-11 58.9

Find 44 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTCAATTCTTTCTTTCCT+TGG 0.280736 8:-33089682 MsG0880043941.01.T01:CDS
ATCTTCACCTTCATGAAGTT+TGG 0.292428 8:+33087828 None:intergenic
CATTCAGAAATGGTGCTTGC+TGG 0.350620 8:-33087958 MsG0880043941.01.T01:CDS
AATGGCTGGATGGACTTATT+AGG 0.352875 8:-33086792 MsG0880043941.01.T01:CDS
TTTAAAACTTTGCTCAAAAC+AGG 0.374466 8:+33089659 None:intergenic
GAAATAGAAGAAAGAAACTA+GGG 0.428379 8:+33088002 None:intergenic
AAAATAACTTTCAAGCTCTT+CGG 0.428417 8:-33086942 MsG0880043941.01.T01:CDS
ATCATTGAAGTAATTGATAA+TGG 0.436398 8:-33086882 MsG0880043941.01.T01:CDS
GATCGATCTGGTCAAGGCAC+TGG 0.441870 8:-33089624 MsG0880043941.01.T01:CDS
ATGGCAGTGGAGCTGCAAAA+TGG 0.452179 8:-33086857 MsG0880043941.01.T01:CDS
AATAAGTCCATCCAGCCATT+TGG 0.456616 8:+33086795 None:intergenic
GCACTGGGTCACTGTGATAC+TGG 0.458393 8:-33089608 MsG0880043941.01.T01:CDS
GACCAGATCGATCATCAGTC+CGG 0.461893 8:+33089634 None:intergenic
AGAAATAGAAGAAAGAAACT+AGG 0.481456 8:+33088001 None:intergenic
AAACACTGGACTTATGTCAT+AGG 0.490184 8:-33087784 MsG0880043941.01.T01:intron
AACTTCATGAAGGTGAAGAT+TGG 0.494334 8:-33087825 MsG0880043941.01.T01:CDS
CCGTCCAAATGTGGGTGGAA+AGG 0.495039 8:-33089721 None:intergenic
AGACATTGATGAGCACTATA+AGG 0.495099 8:-33086916 MsG0880043941.01.T01:CDS
AGTTTGAAGAACTTGTCAAC+GGG 0.511180 8:+33087904 None:intergenic
ATATTGACCCACCAAATGGC+TGG 0.520216 8:-33086806 MsG0880043941.01.T01:CDS
GAGGATATTGACCCACCAAA+TGG 0.531703 8:-33086810 MsG0880043941.01.T01:CDS
ATCGATCTGGTCAAGGCACT+GGG 0.534028 8:-33089623 MsG0880043941.01.T01:CDS
GGTAAACTTAGTACTGAACT+TGG 0.538495 8:-33087937 MsG0880043941.01.T01:CDS
ACCAGATCGATCATCAGTCC+GGG 0.546412 8:+33089635 None:intergenic
ATAACTTTCAAGCTCTTCGG+TGG 0.552870 8:-33086939 MsG0880043941.01.T01:CDS
AAGTCCATCCAGCCATTTGG+TGG 0.553291 8:+33086798 None:intergenic
ATTGATAATGGTGATGGCAG+TGG 0.556824 8:-33086870 MsG0880043941.01.T01:CDS
ACCCGGACTGATGATCGATC+TGG 0.560991 8:-33089636 MsG0880043941.01.T01:CDS
TGACCCACCAAATGGCTGGA+TGG 0.567137 8:-33086802 MsG0880043941.01.T01:CDS
TGTGATACTGGTCGAATCAG+TGG 0.575097 8:-33089596 MsG0880043941.01.T01:CDS
ATTGATCTTCTCATATTCAA+CGG 0.576809 8:+33086833 None:intergenic
ACTGATGATCGATCTGGTCA+AGG 0.589900 8:-33089630 MsG0880043941.01.T01:CDS
GTGATACTGGTCGAATCAGT+GGG 0.591281 8:-33089595 MsG0880043941.01.T01:intron
CATCATGCCAAACTTCATGA+AGG 0.593864 8:-33087835 MsG0880043941.01.T01:CDS
ACTTTGCTCAAAACAGGCCA+AGG 0.593873 8:+33089665 None:intergenic
GTTGATGCTCATCTTGTCAA+AGG 0.600604 8:-33086753 MsG0880043941.01.T01:CDS
TAGTTTGAAGAACTTGTCAA+CGG 0.601012 8:+33087903 None:intergenic
TGACATCACAATAGATGGCA+AGG 0.606404 8:-33087012 MsG0880043941.01.T01:intron
GTAAACTTAGTACTGAACTT+GGG 0.614711 8:-33087936 MsG0880043941.01.T01:CDS
GAAGTAATTGATAATGGTGA+TGG 0.618480 8:-33086876 MsG0880043941.01.T01:CDS
ACACTGATTCAGTTAAACAC+TGG 0.620261 8:-33087798 MsG0880043941.01.T01:CDS
ACTTTCCGTCCAAATGTGGG+TGG 0.635485 8:-33089726 None:intergenic
AGTCCATCCAGCCATTTGGT+GGG 0.658787 8:+33086799 None:intergenic
TGAATATGAGAAGATCAATG+AGG 0.699788 8:-33086829 MsG0880043941.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATAATTTTTTTATTTTA+GGG + Chr8:33087735-33087754 None:intergenic 0.0%
!! TTAAAATAAAAAAAGTAAAC+GGG - Chr8:33087197-33087216 MsG0880043941.01.T01:intron 10.0%
!!! ATAAATATTTTTATATAGAC+CGG + Chr8:33086906-33086925 None:intergenic 10.0%
!!! ATACATTGTTTTAATTTAAT+TGG - Chr8:33089399-33089418 MsG0880043941.01.T01:intron 10.0%
!! GTAATGAAATTTCTATTTAT+AGG - Chr8:33088391-33088410 MsG0880043941.01.T01:intron 15.0%
!! TTGACAAAAATAAAAGTAAA+TGG + Chr8:33087662-33087681 None:intergenic 15.0%
!!! AATATTTTCTTTTGTTATGT+AGG + Chr8:33087706-33087725 None:intergenic 15.0%
!!! ATCATTGATTTTTTTATTAG+AGG + Chr8:33087569-33087588 None:intergenic 15.0%
!!! TTTATTTTAAATAAAAGGCA+AGG + Chr8:33087187-33087206 None:intergenic 15.0%
!!! TTTCATCATAATGTAATTTT+TGG + Chr8:33086931-33086950 None:intergenic 15.0%
!!! TTTTTTTTTTCATTCAGAAA+TGG - Chr8:33088479-33088498 MsG0880043941.01.T01:intron 15.0%
!! AAATTTCTATTTATAGGCAT+GGG - Chr8:33088397-33088416 MsG0880043941.01.T01:intron 20.0%
!! ACAATATATAGAATAAGTGA+TGG - Chr8:33089026-33089045 MsG0880043941.01.T01:intron 20.0%
!! ATCATTGAAGTAATTGATAA+TGG - Chr8:33089565-33089584 MsG0880043941.01.T01:intron 20.0%
!! ATTGCTGGAAATTAAAATAA+GGG - Chr8:33087899-33087918 MsG0880043941.01.T01:CDS 20.0%
!! CATAATCTTCGTATAAAATA+TGG + Chr8:33088813-33088832 None:intergenic 20.0%
!! GATTTACATGTCTAAATAAA+TGG - Chr8:33089079-33089098 MsG0880043941.01.T01:intron 20.0%
!! GTAGAGTTATGAAAAATATA+TGG + Chr8:33089379-33089398 None:intergenic 20.0%
!! TAACATTTCCCTTAAAATAA+GGG - Chr8:33088091-33088110 MsG0880043941.01.T01:intron 20.0%
!! TGCTCTTATTAATTGAATTA+AGG + Chr8:33088784-33088803 None:intergenic 20.0%
!! TTAACATTTCCCTTAAAATA+AGG - Chr8:33088090-33088109 MsG0880043941.01.T01:intron 20.0%
!!! AATTCAATTAATAAGAGCAT+AGG - Chr8:33088785-33088804 MsG0880043941.01.T01:intron 20.0%
!!! ATTCAATTAATAAGAGCATA+GGG - Chr8:33088786-33088805 MsG0880043941.01.T01:intron 20.0%
!!! TGTATGAGTTAATTTGAATT+TGG + Chr8:33087079-33087098 None:intergenic 20.0%
! AAAATAACTTTCAAGCTCTT+CGG - Chr8:33089505-33089524 MsG0880043941.01.T01:intron 25.0%
! AACATTTCCCTTAAAATAAG+GGG - Chr8:33088092-33088111 MsG0880043941.01.T01:intron 25.0%
! AATAAAAAAAGTAAACGGGT+CGG - Chr8:33087201-33087220 MsG0880043941.01.T01:intron 25.0%
! AATAGAAACTAGTATATCCA+AGG + Chr8:33087859-33087878 None:intergenic 25.0%
! AATTTCTATTTATAGGCATG+GGG - Chr8:33088398-33088417 MsG0880043941.01.T01:intron 25.0%
! ACTTTATCTTTGTCATCTTT+AGG + Chr8:33088837-33088856 None:intergenic 25.0%
! AGAAATAGAAGAAAGAAACT+AGG + Chr8:33088449-33088468 None:intergenic 25.0%
! ATACCTTATGTGATTATTGT+TGG - Chr8:33087473-33087492 MsG0880043941.01.T01:intron 25.0%
! ATTGATCTTCTCATATTCAA+CGG + Chr8:33089617-33089636 None:intergenic 25.0%
! CATTGCTGGAAATTAAAATA+AGG - Chr8:33087898-33087917 MsG0880043941.01.T01:CDS 25.0%
! GAAATAGAAGAAAGAAACTA+GGG + Chr8:33088448-33088467 None:intergenic 25.0%
! GAAATTTCTATTTATAGGCA+TGG - Chr8:33088396-33088415 MsG0880043941.01.T01:intron 25.0%
! TAAAAGTAAATGGACAAGTT+AGG + Chr8:33087652-33087671 None:intergenic 25.0%
! TCAAATGCTAAATACTCATT+AGG - Chr8:33089147-33089166 MsG0880043941.01.T01:intron 25.0%
!! CATCATTGATTACATAATAG+AGG + Chr8:33088343-33088362 None:intergenic 25.0%
!! GAGTTAATTTGAATTTGGAT+TGG + Chr8:33087074-33087093 None:intergenic 25.0%
!! TATTGTCTCATTGATTGATT+TGG + Chr8:33089012-33089031 None:intergenic 25.0%
!! TTTAAAACTTTGCTCAAAAC+AGG + Chr8:33086791-33086810 None:intergenic 25.0%
!!! ACGTGCAATGTTTTATTTTA+GGG + Chr8:33088297-33088316 None:intergenic 25.0%
!!! ATAAGGTATGTTTGTTTCTA+GGG + Chr8:33087462-33087481 None:intergenic 25.0%
!!! CTTATTTTAATTTCCAGCAA+TGG + Chr8:33087900-33087919 None:intergenic 25.0%
!!! TTATTTTGTTGATAGATGTG+TGG - Chr8:33087620-33087639 MsG0880043941.01.T01:intron 25.0%
AAAAATAAGACACTGTTTCC+TGG - Chr8:33088883-33088902 MsG0880043941.01.T01:intron 30.0%
AAAACCTCACAAATAGCATT+TGG - Chr8:33087120-33087139 MsG0880043941.01.T01:intron 30.0%
AAACCTCACAAATAGCATTT+GGG - Chr8:33087121-33087140 MsG0880043941.01.T01:intron 30.0%
AAGAAGCTTCTTCTTATGTT+TGG + Chr8:33087406-33087425 None:intergenic 30.0%
AATAGAGGCAGTAAACTAAA+GGG + Chr8:33088328-33088347 None:intergenic 30.0%
AATGTTAAACTGTGACCTTA+TGG + Chr8:33088273-33088292 None:intergenic 30.0%
ACAAATTCATATATGATGCC+AGG + Chr8:33088904-33088923 None:intergenic 30.0%
AGATAAACAAGATGATGACT+TGG + Chr8:33088721-33088740 None:intergenic 30.0%
ATAAAAAAAGTAAACGGGTC+GGG - Chr8:33087202-33087221 MsG0880043941.01.T01:intron 30.0%
ATAGATACGTAGTACATACT+TGG - Chr8:33089110-33089129 MsG0880043941.01.T01:intron 30.0%
CAACCAACAATAATCACATA+AGG + Chr8:33087479-33087498 None:intergenic 30.0%
CATATATGAATTTGTGCTGA+TGG - Chr8:33088909-33088928 MsG0880043941.01.T01:intron 30.0%
TAATAGAGGCAGTAAACTAA+AGG + Chr8:33088329-33088348 None:intergenic 30.0%
TACTCAATTCTTTCTTTCCT+TGG - Chr8:33086765-33086784 MsG0880043941.01.T01:CDS 30.0%
TAGTTTGAAGAACTTGTCAA+CGG + Chr8:33088547-33088566 None:intergenic 30.0%
TGAATATGAGAAGATCAATG+AGG - Chr8:33089618-33089637 MsG0880043941.01.T01:CDS 30.0%
! CATAAGGTATGTTTGTTTCT+AGG + Chr8:33087463-33087482 None:intergenic 30.0%
! GTAAACTTAGTACTGAACTT+GGG - Chr8:33088511-33088530 MsG0880043941.01.T01:intron 30.0%
! GTTGAGAGTATGTGATAATA+GGG - Chr8:33087143-33087162 MsG0880043941.01.T01:intron 30.0%
!! GAAGTAATTGATAATGGTGA+TGG - Chr8:33089571-33089590 MsG0880043941.01.T01:intron 30.0%
!!! AACACCAGTGTTTTAAAATC+CGG + Chr8:33087376-33087395 None:intergenic 30.0%
!!! AGCAAAACCCCTTATTTTAA+GGG + Chr8:33088102-33088121 None:intergenic 30.0%
!!! CACGTGCAATGTTTTATTTT+AGG + Chr8:33088298-33088317 None:intergenic 30.0%
!!! TAGCAAAACCCCTTATTTTA+AGG + Chr8:33088103-33088122 None:intergenic 30.0%
!!! TTGAGCAAAGTTTTAAAACC+CGG - Chr8:33086794-33086813 MsG0880043941.01.T01:CDS 30.0%
AAACACTGGACTTATGTCAT+AGG - Chr8:33088663-33088682 MsG0880043941.01.T01:intron 35.0%
AACTTCATGAAGGTGAAGAT+TGG - Chr8:33088622-33088641 MsG0880043941.01.T01:intron 35.0%
AGACATTGATGAGCACTATA+AGG - Chr8:33089531-33089550 MsG0880043941.01.T01:intron 35.0%
AGTCGTTCCAATAAAATTGG+AGG - Chr8:33087520-33087539 MsG0880043941.01.T01:intron 35.0%
AGTTTGAAGAACTTGTCAAC+GGG + Chr8:33088546-33088565 None:intergenic 35.0%
ATCTTCACCTTCATGAAGTT+TGG + Chr8:33088622-33088641 None:intergenic 35.0%
CAGAGTCGTTCCAATAAAAT+TGG - Chr8:33087517-33087536 MsG0880043941.01.T01:intron 35.0%
CATACCTCCACAAATAATTG+AGG - Chr8:33087777-33087796 MsG0880043941.01.T01:intron 35.0%
GAGGTATGAGTATAATTGTC+GGG + Chr8:33087765-33087784 None:intergenic 35.0%
TCTTCTTAACCAATGCCATA+AGG - Chr8:33088255-33088274 MsG0880043941.01.T01:intron 35.0%
TTTCCTTAACAAATGTCCCA+AGG + Chr8:33088134-33088153 None:intergenic 35.0%
! ATATGAATTTGTGCTGATGG+AGG - Chr8:33088912-33088931 MsG0880043941.01.T01:intron 35.0%
! GGAGGTATGAGTATAATTGT+CGG + Chr8:33087766-33087785 None:intergenic 35.0%
! GGTAAACTTAGTACTGAACT+TGG - Chr8:33088510-33088529 MsG0880043941.01.T01:intron 35.0%
! GGTTGAGAGTATGTGATAAT+AGG - Chr8:33087142-33087161 MsG0880043941.01.T01:intron 35.0%
! TGTTGATAGATGTGTGGATT+TGG - Chr8:33087626-33087645 MsG0880043941.01.T01:intron 35.0%
! TTTTGCTAACTAGTGTCCTT+GGG - Chr8:33088115-33088134 MsG0880043941.01.T01:intron 35.0%
!! AAGATGATGACTTGGTTATG+AGG + Chr8:33088713-33088732 None:intergenic 35.0%
!! ACACTGATTCAGTTAAACAC+TGG - Chr8:33088649-33088668 MsG0880043941.01.T01:intron 35.0%
!! TAGGGTTGATATGATGAAAC+TGG + Chr8:33088430-33088449 None:intergenic 35.0%
AAAATAAGGGCCTTGCTAAC+CGG - Chr8:33087912-33087931 MsG0880043941.01.T01:CDS 40.0%
AAACTGTGACCTTATGGCAT+TGG + Chr8:33088267-33088286 None:intergenic 40.0%
AAATGTTAACCGATGCTTCC+GGG + Chr8:33088079-33088098 None:intergenic 40.0%
AATAAGTCCATCCAGCCATT+TGG + Chr8:33089655-33089674 None:intergenic 40.0%
ATAACTTTCAAGCTCTTCGG+TGG - Chr8:33089508-33089527 MsG0880043941.01.T01:intron 40.0%
CATCATGCCAAACTTCATGA+AGG - Chr8:33088612-33088631 MsG0880043941.01.T01:intron 40.0%
GAAATGTTAACCGATGCTTC+CGG + Chr8:33088080-33088099 None:intergenic 40.0%
GAGTATAATTGTCGGGATGT+AGG + Chr8:33087758-33087777 None:intergenic 40.0%
GCCATCTATTGTGATGTCAT+GGG + Chr8:33089434-33089453 None:intergenic 40.0%
GTCCTAAACGATATGTGAGA+AGG - Chr8:33089247-33089266 MsG0880043941.01.T01:intron 40.0%
GTTGATGCTCATCTTGTCAA+AGG - Chr8:33089694-33089713 MsG0880043941.01.T01:CDS 40.0%
TAATTGAGGCCCCCATAAAT+TGG - Chr8:33087791-33087810 MsG0880043941.01.T01:CDS 40.0%
TCCCATGACATCACAATAGA+TGG - Chr8:33089430-33089449 MsG0880043941.01.T01:intron 40.0%
TGACATCACAATAGATGGCA+AGG - Chr8:33089435-33089454 MsG0880043941.01.T01:intron 40.0%
TGCCATCTATTGTGATGTCA+TGG + Chr8:33089435-33089454 None:intergenic 40.0%
TGCCTTCTCACATATCGTTT+AGG + Chr8:33089252-33089271 None:intergenic 40.0%
! AATGGCTGGATGGACTTATT+AGG - Chr8:33089655-33089674 MsG0880043941.01.T01:CDS 40.0%
! AGCTGAGCCTCCAATTTTAT+TGG + Chr8:33087530-33087549 None:intergenic 40.0%
! CAACCCAAATGCTATTTGTG+AGG + Chr8:33087127-33087146 None:intergenic 40.0%
! GTTTTGCTAACTAGTGTCCT+TGG - Chr8:33088114-33088133 MsG0880043941.01.T01:intron 40.0%
! TCTTTGAGTTTGCCCAAGAA+CGG - Chr8:33087833-33087852 MsG0880043941.01.T01:CDS 40.0%
! TGTCCTTGGGACATTTGTTA+AGG - Chr8:33088128-33088147 MsG0880043941.01.T01:intron 40.0%
! TTATTGTTGGTTGCAACGCA+CGG - Chr8:33087486-33087505 MsG0880043941.01.T01:intron 40.0%
!! ATTGATAATGGTGATGGCAG+TGG - Chr8:33089577-33089596 MsG0880043941.01.T01:intron 40.0%
!! TAATTCCTTAACTTGTGCCC+CGG - Chr8:33088058-33088077 MsG0880043941.01.T01:intron 40.0%
!! TTTCTAGGGCAAGAAAGTGA+GGG + Chr8:33087448-33087467 None:intergenic 40.0%
!!! GGTGGAAAGGTTTTTAGTGT+GGG - Chr8:33086739-33086758 MsG0880043941.01.T01:CDS 40.0%
AAAAAAGTAAACGGGTCGGG+TGG - Chr8:33087205-33087224 MsG0880043941.01.T01:intron 45.0%
AAAAAGTAAACGGGTCGGGT+GGG - Chr8:33087206-33087225 MsG0880043941.01.T01:intron 45.0%
AATGTTAACCGATGCTTCCG+GGG + Chr8:33088078-33088097 None:intergenic 45.0%
ACTGATGATCGATCTGGTCA+AGG - Chr8:33086817-33086836 MsG0880043941.01.T01:CDS 45.0%
ACTTTGCTCAAAACAGGCCA+AGG + Chr8:33086785-33086804 None:intergenic 45.0%
AGTATATCCAAGGCCGTTCT+TGG + Chr8:33087849-33087868 None:intergenic 45.0%
AGTTTCTTAACAAGTGCCCC+AGG + Chr8:33087941-33087960 None:intergenic 45.0%
ATATTGACCCACCAAATGGC+TGG - Chr8:33089641-33089660 MsG0880043941.01.T01:CDS 45.0%
ATGGGGGCCTCAATTATTTG+TGG + Chr8:33087787-33087806 None:intergenic 45.0%
CAGAGGGCTAATTGCATATC+TGG - Chr8:33087281-33087300 MsG0880043941.01.T01:intron 45.0%
CATGTGTTGCATACCATTGC+TGG - Chr8:33087884-33087903 MsG0880043941.01.T01:CDS 45.0%
CATTCAGAAATGGTGCTTGC+TGG - Chr8:33088489-33088508 MsG0880043941.01.T01:intron 45.0%
GAGGATATTGACCCACCAAA+TGG - Chr8:33089637-33089656 MsG0880043941.01.T01:CDS 45.0%
GGCAAACTCAAAGAGCTCTA+TGG + Chr8:33087827-33087846 None:intergenic 45.0%
GTATATCCAAGGCCGTTCTT+GGG + Chr8:33087848-33087867 None:intergenic 45.0%
GTGATACTGGTCGAATCAGT+GGG - Chr8:33086852-33086871 MsG0880043941.01.T01:CDS 45.0%
TGTGATACTGGTCGAATCAG+TGG - Chr8:33086851-33086870 MsG0880043941.01.T01:CDS 45.0%
! AGACCGGTTCAATAGTCATG+CGG + Chr8:33086890-33086909 None:intergenic 45.0%
! TATTGTTGGTTGCAACGCAC+GGG - Chr8:33087487-33087506 MsG0880043941.01.T01:intron 45.0%
! TTGTGCTGATGGAGGATCTA+TGG - Chr8:33088920-33088939 MsG0880043941.01.T01:intron 45.0%
!! GTTTCTAGGGCAAGAAAGTG+AGG + Chr8:33087449-33087468 None:intergenic 45.0%
!! TTCTAGGGCAAGAAAGTGAG+GGG + Chr8:33087447-33087466 None:intergenic 45.0%
!!! CGGTCCGGATTTTAAAACAC+TGG - Chr8:33087369-33087388 MsG0880043941.01.T01:intron 45.0%
!!! GGGTGGAAAGGTTTTTAGTG+TGG - Chr8:33086738-33086757 MsG0880043941.01.T01:CDS 45.0%
!!! TTTTAAAATCCGGACCGACC+CGG + Chr8:33087366-33087385 None:intergenic 45.0%
!!! CTTTTTTTATTTTAAATAAA+AGG + Chr8:33087192-33087211 None:intergenic 5.0%
!!! GATAATAATTTTTTTATTTT+AGG + Chr8:33087736-33087755 None:intergenic 5.0%
!!! TTTAAAATAAAAAAAGTAAA+CGG - Chr8:33087196-33087215 MsG0880043941.01.T01:intron 5.0%
AAGTCCATCCAGCCATTTGG+TGG + Chr8:33089652-33089671 None:intergenic 50.0%
ACCAGATCGATCATCAGTCC+GGG + Chr8:33086815-33086834 None:intergenic 50.0%
AGTCCATCCAGCCATTTGGT+GGG + Chr8:33089651-33089670 None:intergenic 50.0%
ATGGCAGTGGAGCTGCAAAA+TGG - Chr8:33089590-33089609 MsG0880043941.01.T01:intron 50.0%
CGAATCAGTGGGTCACTGAT+CGG - Chr8:33086863-33086882 MsG0880043941.01.T01:CDS 50.0%
CTCAAAGAGCTCTATGGAGC+CGG + Chr8:33087821-33087840 None:intergenic 50.0%
CTGATGGAGGATCTATGGAG+AGG - Chr8:33088925-33088944 MsG0880043941.01.T01:intron 50.0%
GACCAGATCGATCATCAGTC+CGG + Chr8:33086816-33086835 None:intergenic 50.0%
GGACCGCATGACTATTGAAC+CGG - Chr8:33086884-33086903 MsG0880043941.01.T01:CDS 50.0%
GGGGCCTCAATTATTTGTGG+AGG + Chr8:33087784-33087803 None:intergenic 50.0%
TCAAAGAGCTCTATGGAGCC+GGG + Chr8:33087820-33087839 None:intergenic 50.0%
TTGAGGCCCCCATAAATTGG+AGG - Chr8:33087794-33087813 MsG0880043941.01.T01:CDS 50.0%
! ATCGATCTGGTCAAGGCACT+GGG - Chr8:33086824-33086843 MsG0880043941.01.T01:CDS 50.0%
! TCTAGGGCAAGAAAGTGAGG+GGG + Chr8:33087446-33087465 None:intergenic 50.0%
!! GCAATTAGCCCTCTGAAACC+CGG + Chr8:33087276-33087295 None:intergenic 50.0%
AAACCCGTCAGACCGTGAAC+CGG + Chr8:33087337-33087356 None:intergenic 55.0%
ACCCGGACTGATGATCGATC+TGG - Chr8:33086811-33086830 MsG0880043941.01.T01:CDS 55.0%
AGCCGGGCCTCCAATTTATG+GGG + Chr8:33087804-33087823 None:intergenic 55.0%
AGTTTGCCCAAGAACGGCCT+TGG - Chr8:33087839-33087858 MsG0880043941.01.T01:CDS 55.0%
CTAGGGCAAGAAAGTGAGGG+GGG + Chr8:33087445-33087464 None:intergenic 55.0%
GAGCCGGGCCTCCAATTTAT+GGG + Chr8:33087805-33087824 None:intergenic 55.0%
GAGGGGGGAGAGAAAGTGAA+TGG + Chr8:33087430-33087449 None:intergenic 55.0%
GATCGATCTGGTCAAGGCAC+TGG - Chr8:33086823-33086842 MsG0880043941.01.T01:CDS 55.0%
GCACTGGGTCACTGTGATAC+TGG - Chr8:33086839-33086858 MsG0880043941.01.T01:CDS 55.0%
GGATCACACCGGGTTTCAGA+GGG - Chr8:33087265-33087284 MsG0880043941.01.T01:intron 55.0%
TAACAAGTGCCCCAGGACAC+CGG + Chr8:33087934-33087953 None:intergenic 55.0%
TGACCCACCAAATGGCTGGA+TGG - Chr8:33089645-33089664 MsG0880043941.01.T01:CDS 55.0%
TGCTTCCGGGGCACAAGTTA+AGG + Chr8:33088066-33088085 None:intergenic 55.0%
! AACTTGTGCCCCGGAAGCAT+CGG - Chr8:33088067-33088086 MsG0880043941.01.T01:intron 55.0%
!! CTCTGAAACCCGGTGTGATC+CGG + Chr8:33087266-33087285 None:intergenic 55.0%
AAAATCCGGACCGACCCGGT+CGG + Chr8:33087362-33087381 None:intergenic 60.0%
AAACCCGGTGTGATCCGGTC+GGG + Chr8:33087261-33087280 None:intergenic 60.0%
CCTTGCTAACCGGTGTCCTG+GGG - Chr8:33087922-33087941 MsG0880043941.01.T01:CDS 60.0%
CGGATCACACCGGGTTTCAG+AGG - Chr8:33087264-33087283 MsG0880043941.01.T01:intron 60.0%
GAAACCCGGTGTGATCCGGT+CGG + Chr8:33087262-33087281 None:intergenic 60.0%
GCCCCCATAAATTGGAGGCC+CGG - Chr8:33087799-33087818 MsG0880043941.01.T01:CDS 60.0%
GCCGGGCCTCCAATTTATGG+GGG + Chr8:33087803-33087822 None:intergenic 60.0%
GCCTTGCTAACCGGTGTCCT+GGG - Chr8:33087921-33087940 MsG0880043941.01.T01:CDS 60.0%
GGAGCCGGGCCTCCAATTTA+TGG + Chr8:33087806-33087825 None:intergenic 60.0%
TGTGATCCGGTCGGGTCAGT+GGG + Chr8:33087253-33087272 None:intergenic 60.0%
!! ACGGGTCGGGTGGGTTAAAC+TGG - Chr8:33087215-33087234 MsG0880043941.01.T01:intron 60.0%
!! CGGGTCGGGTGGGTTAAACT+GGG - Chr8:33087216-33087235 MsG0880043941.01.T01:intron 60.0%
!! GTCTGACGGGTTTGACCGAC+CGG - Chr8:33087344-33087363 MsG0880043941.01.T01:intron 60.0%
!! TCTGACGGGTTTGACCGACC+GGG - Chr8:33087345-33087364 MsG0880043941.01.T01:intron 60.0%
ACGGGTTTGACCGACCGGGT+CGG - Chr8:33087349-33087368 MsG0880043941.01.T01:intron 65.0%
CCCTCCGGTTCACGGTCTGA+CGG - Chr8:33087330-33087349 MsG0880043941.01.T01:intron 65.0%
CCGTCAGACCGTGAACCGGA+GGG + Chr8:33087333-33087352 None:intergenic 65.0%
CCTCCGGTTCACGGTCTGAC+GGG - Chr8:33087331-33087350 MsG0880043941.01.T01:intron 65.0%
CTGACCCGACCGGATCACAC+CGG - Chr8:33087254-33087273 MsG0880043941.01.T01:intron 65.0%
GGCCTTGCTAACCGGTGTCC+TGG - Chr8:33087920-33087939 MsG0880043941.01.T01:CDS 65.0%
GTGTGATCCGGTCGGGTCAG+TGG + Chr8:33087254-33087273 None:intergenic 65.0%
TGACCCGACCGGATCACACC+GGG - Chr8:33087255-33087274 MsG0880043941.01.T01:intron 65.0%
TTTGACCGACCGGGTCGGTC+CGG - Chr8:33087354-33087373 MsG0880043941.01.T01:intron 65.0%
! AACCGGAGGGTGCAGCGGTT+CGG + Chr8:33087320-33087339 None:intergenic 65.0%
! CAGCGGTTCGGGCAGGCTAT+AGG + Chr8:33087308-33087327 None:intergenic 65.0%
! CCCCAGGACACCGGTTAGCA+AGG + Chr8:33087925-33087944 None:intergenic 65.0%
AGTCCGCCCACTGACCCGAC+CGG - Chr8:33087244-33087263 MsG0880043941.01.T01:intron 70.0%
CCCGTCAGACCGTGAACCGG+AGG + Chr8:33087334-33087353 None:intergenic 70.0%
CCGCTGCACCCTCCGGTTCA+CGG - Chr8:33087322-33087341 MsG0880043941.01.T01:intron 70.0%
GATCCGGTCGGGTCAGTGGG+CGG + Chr8:33087250-33087269 None:intergenic 70.0%
! ACCGGAGGGTGCAGCGGTTC+GGG + Chr8:33087319-33087338 None:intergenic 70.0%
! CCGTGAACCGGAGGGTGCAG+CGG + Chr8:33087325-33087344 None:intergenic 70.0%
GCCCGAACCGCTGCACCCTC+CGG - Chr8:33087315-33087334 MsG0880043941.01.T01:intron 75.0%
! GAGGGTGCAGCGGTTCGGGC+AGG + Chr8:33087315-33087334 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr8 gene 33086734 33089735 33086734 ID=MsG0880043941.01;Name=MsG0880043941.01
Chr8 mRNA 33086734 33089735 33086734 ID=MsG0880043941.01.T01;Parent=MsG0880043941.01;Name=MsG0880043941.01.T01;_AED=0.49;_eAED=0.60;_QI=0|0|0|1|0.5|0.33|3|0|226
Chr8 exon 33089596 33089735 33089596 ID=MsG0880043941.01.T01:exon:8144;Parent=MsG0880043941.01.T01
Chr8 exon 33087785 33088038 33087785 ID=MsG0880043941.01.T01:exon:8143;Parent=MsG0880043941.01.T01
Chr8 exon 33086734 33087020 33086734 ID=MsG0880043941.01.T01:exon:8142;Parent=MsG0880043941.01.T01
Chr8 CDS 33089596 33089735 33089596 ID=MsG0880043941.01.T01:cds;Parent=MsG0880043941.01.T01
Chr8 CDS 33087785 33088038 33087785 ID=MsG0880043941.01.T01:cds;Parent=MsG0880043941.01.T01
Chr8 CDS 33086734 33087020 33086734 ID=MsG0880043941.01.T01:cds;Parent=MsG0880043941.01.T01
Gene Sequence

>MsG0880043941.01.T01

ATGTGGGTGGAAAGGTTTTTAGTGTGGGTCGTACTCAATTCTTTCTTTCCTTGGCCTGTTTTGAGCAAAGTTTTAAAACCCGGACTGATGATCGATCTGGTCAAGGCACTGGGTCACTGTGATACTGGTCGAATCAGTGGTTTCATCATATCAACCCTAGTTTCTTTCTTCTATTTCTTCTTTTTGTTTTTTTTTTTTCATTCAGAAATGGTGCTTGCTGGTAAACTTAGTACTGAACTTGGGATCAAAACACCCGTTGACAAGTTCTTCAAACTATATGCATCAGAACTTCACGAAGTGCAAAACATTAGTGAAAGAATTCATCATGCCAAACTTCATGAAGGTGAAGATTGGCATCACACTGATTCAGTTAAACACTGGACTTATGTCATAGATGGCAAGGTAAACACATGTCATGAGAGTGTTGAAGAAGTTGATGAACAGAACAAAAAAATAACTTTCAAGCTCTTCGGTGGAGACATTGATGAGCACTATAAGGTCTTTAATCTGATCATTGAAGTAATTGATAATGGTGATGGCAGTGGAGCTGCAAAATGGACCGTTGAATATGAGAAGATCAATGAGGATATTGACCCACCAAATGGCTGGATGGACTTATTAGGCAAAATCACTCGAGAAGTTGATGCTCATCTTGTCAAAGGCGCAAACATAGCTCTATAA

Protein sequence

>MsG0880043941.01.T01

MWVERFLVWVVLNSFFPWPVLSKVLKPGLMIDLVKALGHCDTGRISGFIISTLVSFFYFFFLFFFFHSEMVLAGKLSTELGIKTPVDKFFKLYASELHEVQNISERIHHAKLHEGEDWHHTDSVKHWTYVIDGKVNTCHESVEEVDEQNKKITFKLFGGDIDEHYKVFNLIIEVIDNGDGSGAAKWTVEYEKINEDIDPPNGWMDLLGKITREVDAHLVKGANIAL*