Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001109.01.T01 | XP_013466514.3 | 95.758 | 165 | 7 | 0 | 1 | 165 | 1 | 165 | 7.09E-112 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001109.01.T01 | Q9SSK5 | 38.961 | 154 | 89 | 2 | 2 | 155 | 6 | 154 | 1.21E-33 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001109.01.T01 | A0A072VQZ0 | 95.758 | 165 | 7 | 0 | 1 | 165 | 1 | 165 | 3.38e-112 | 325 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180001109.01 | MsG0180001108.01 | PPI |
| MsG0180001109.01 | MsG0580025828.01 | PPI |
| MsG0880043941.01 | MsG0180001109.01 | PPI |
| MsG0880043953.01 | MsG0180001109.01 | PPI |
| MsG0180001109.01 | MsG0080048633.01 | PPI |
| MsG0180001109.01 | MsG0180001107.01 | PPI |
| MsG0180001109.01 | MsG0180001100.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001109.01.T01 | MTR_1g030840 | 95.758 | 165 | 7 | 0 | 1 | 165 | 1 | 165 | 8.58e-116 | 325 |
| MsG0180001109.01.T01 | MTR_1g030810 | 59.355 | 155 | 58 | 2 | 1 | 155 | 1 | 150 | 4.25e-62 | 189 |
| MsG0180001109.01.T01 | MTR_1g030820 | 57.595 | 158 | 62 | 2 | 1 | 158 | 1 | 153 | 5.07e-62 | 188 |
| MsG0180001109.01.T01 | MTR_8g045555 | 38.462 | 156 | 88 | 4 | 1 | 155 | 1 | 149 | 1.86e-32 | 113 |
| MsG0180001109.01.T01 | MTR_8g045570 | 39.744 | 156 | 86 | 4 | 1 | 155 | 1 | 149 | 2.66e-30 | 108 |
| MsG0180001109.01.T01 | MTR_8g045490 | 38.462 | 156 | 88 | 4 | 1 | 155 | 1 | 149 | 1.03e-29 | 106 |
| MsG0180001109.01.T01 | MTR_8g045400 | 39.103 | 156 | 86 | 5 | 1 | 155 | 1 | 148 | 1.11e-29 | 106 |
| MsG0180001109.01.T01 | MTR_8g045695 | 39.103 | 156 | 86 | 5 | 1 | 155 | 1 | 148 | 3.58e-29 | 105 |
| MsG0180001109.01.T01 | MTR_8g045520 | 37.821 | 156 | 89 | 4 | 1 | 155 | 1 | 149 | 1.30e-28 | 103 |
| MsG0180001109.01.T01 | MTR_8g045735 | 37.821 | 156 | 88 | 5 | 1 | 155 | 1 | 148 | 5.74e-28 | 102 |
| MsG0180001109.01.T01 | MTR_8g045665 | 38.854 | 157 | 85 | 6 | 1 | 155 | 1 | 148 | 1.01e-27 | 101 |
| MsG0180001109.01.T01 | MTR_8g012550 | 36.601 | 153 | 90 | 2 | 6 | 158 | 8 | 153 | 1.07e-27 | 101 |
| MsG0180001109.01.T01 | MTR_8g045640 | 40.127 | 157 | 83 | 6 | 1 | 155 | 1 | 148 | 1.30e-27 | 101 |
| MsG0180001109.01.T01 | MTR_8g045560 | 38.854 | 157 | 85 | 6 | 1 | 155 | 1 | 148 | 5.94e-27 | 99.8 |
| MsG0180001109.01.T01 | MTR_8g045300 | 34.615 | 156 | 94 | 4 | 1 | 155 | 1 | 149 | 3.63e-23 | 89.7 |
| MsG0180001109.01.T01 | MTR_1g031640 | 31.081 | 148 | 89 | 5 | 9 | 155 | 9 | 144 | 2.52e-19 | 79.7 |
| MsG0180001109.01.T01 | MTR_5g035010 | 30.075 | 133 | 87 | 3 | 1 | 132 | 3 | 130 | 7.71e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001109.01.T01 | AT1G70890 | 38.961 | 154 | 89 | 2 | 2 | 155 | 6 | 154 | 1.24e-34 | 119 |
| MsG0180001109.01.T01 | AT1G70840 | 38.312 | 154 | 90 | 2 | 2 | 155 | 19 | 167 | 7.92e-33 | 115 |
| MsG0180001109.01.T01 | AT1G70830 | 38.312 | 154 | 90 | 2 | 2 | 155 | 136 | 284 | 1.02e-31 | 115 |
| MsG0180001109.01.T01 | AT1G70830 | 35.294 | 102 | 61 | 2 | 60 | 161 | 32 | 128 | 2.18e-11 | 60.8 |
| MsG0180001109.01.T01 | AT1G70830 | 37.662 | 154 | 91 | 2 | 2 | 155 | 21 | 169 | 2.50e-31 | 111 |
| MsG0180001109.01.T01 | AT1G70830 | 37.500 | 160 | 95 | 2 | 2 | 161 | 21 | 175 | 2.91e-31 | 112 |
| MsG0180001109.01.T01 | AT1G70830 | 38.312 | 154 | 90 | 2 | 2 | 155 | 183 | 331 | 3.57e-31 | 115 |
| MsG0180001109.01.T01 | AT1G70830 | 37.500 | 160 | 95 | 2 | 2 | 161 | 21 | 175 | 6.03e-30 | 111 |
| MsG0180001109.01.T01 | AT1G70830 | 37.500 | 160 | 95 | 2 | 2 | 161 | 21 | 175 | 9.23e-31 | 112 |
| MsG0180001109.01.T01 | AT5G28010 | 37.662 | 154 | 91 | 2 | 2 | 155 | 14 | 162 | 9.41e-30 | 107 |
| MsG0180001109.01.T01 | AT5G28010 | 37.662 | 154 | 91 | 2 | 2 | 155 | 14 | 162 | 9.41e-30 | 107 |
| MsG0180001109.01.T01 | AT1G70850 | 36.364 | 154 | 93 | 2 | 2 | 155 | 8 | 156 | 1.50e-29 | 108 |
| MsG0180001109.01.T01 | AT1G70850 | 36.364 | 154 | 93 | 2 | 2 | 155 | 8 | 156 | 6.10e-29 | 108 |
| MsG0180001109.01.T01 | AT1G70850 | 37.762 | 143 | 84 | 2 | 13 | 155 | 175 | 312 | 1.77e-27 | 105 |
| MsG0180001109.01.T01 | AT1G70850 | 36.364 | 154 | 93 | 2 | 2 | 155 | 8 | 156 | 6.10e-29 | 108 |
| MsG0180001109.01.T01 | AT1G70850 | 37.762 | 143 | 84 | 2 | 13 | 155 | 175 | 312 | 1.77e-27 | 105 |
| MsG0180001109.01.T01 | AT1G70880 | 37.013 | 154 | 92 | 2 | 2 | 155 | 7 | 155 | 1.38e-28 | 103 |
| MsG0180001109.01.T01 | AT1G23130 | 31.818 | 154 | 99 | 3 | 2 | 155 | 9 | 156 | 6.39e-24 | 92.0 |
| MsG0180001109.01.T01 | AT5G28000 | 32.468 | 154 | 99 | 2 | 2 | 155 | 12 | 160 | 2.39e-22 | 88.2 |
| MsG0180001109.01.T01 | AT1G14930 | 32.258 | 155 | 98 | 3 | 1 | 155 | 1 | 148 | 2.50e-19 | 80.1 |
| MsG0180001109.01.T01 | AT1G35260 | 29.252 | 147 | 98 | 4 | 9 | 155 | 8 | 148 | 3.32e-17 | 74.3 |
| MsG0180001109.01.T01 | AT1G14950 | 29.747 | 158 | 98 | 4 | 1 | 155 | 1 | 148 | 1.32e-16 | 72.8 |
| MsG0180001109.01.T01 | AT1G14960 | 29.677 | 155 | 102 | 3 | 1 | 155 | 1 | 148 | 1.76e-16 | 72.4 |
| MsG0180001109.01.T01 | AT4G14060 | 30.380 | 158 | 97 | 4 | 1 | 155 | 1 | 148 | 3.05e-16 | 72.0 |
| MsG0180001109.01.T01 | AT1G30990 | 27.742 | 155 | 104 | 3 | 1 | 155 | 1 | 147 | 6.56e-16 | 70.9 |
| MsG0180001109.01.T01 | AT2G01520 | 29.114 | 158 | 99 | 4 | 1 | 155 | 1 | 148 | 7.56e-15 | 68.2 |
| MsG0180001109.01.T01 | AT1G35310 | 33.333 | 117 | 73 | 2 | 39 | 155 | 36 | 147 | 1.26e-14 | 67.8 |
| MsG0180001109.01.T01 | AT1G23120 | 28.767 | 146 | 93 | 4 | 10 | 155 | 10 | 144 | 6.52e-14 | 65.9 |
| MsG0180001109.01.T01 | AT2G01530 | 29.747 | 158 | 98 | 4 | 1 | 155 | 1 | 148 | 7.63e-14 | 65.5 |
| MsG0180001109.01.T01 | AT1G14940 | 28.387 | 155 | 104 | 3 | 1 | 155 | 1 | 148 | 1.29e-13 | 65.1 |
| MsG0180001109.01.T01 | AT1G23120 | 28.767 | 146 | 93 | 4 | 10 | 155 | 60 | 194 | 2.38e-13 | 65.1 |
| MsG0180001109.01.T01 | AT4G23670 | 30.380 | 158 | 97 | 4 | 1 | 155 | 1 | 148 | 1.68e-12 | 62.0 |
| MsG0180001109.01.T01 | AT1G24020 | 27.848 | 158 | 102 | 4 | 1 | 155 | 1 | 149 | 2.75e-12 | 61.6 |
| MsG0180001109.01.T01 | AT1G24020 | 27.848 | 158 | 102 | 4 | 1 | 155 | 1 | 149 | 2.75e-12 | 61.6 |
| MsG0180001109.01.T01 | AT4G23680 | 28.481 | 158 | 100 | 4 | 1 | 155 | 1 | 148 | 1.29e-11 | 59.7 |
| MsG0180001109.01.T01 | AT3G26460 | 24.051 | 158 | 108 | 3 | 1 | 155 | 1 | 149 | 1.93e-11 | 59.3 |
| MsG0180001109.01.T01 | AT3G26450 | 22.581 | 155 | 114 | 2 | 1 | 155 | 1 | 149 | 5.31e-11 | 58.2 |
Find 31 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAGAAACATGGCTTTAAA+TGG | 0.277591 | 1:+16106266 | None:intergenic |
| GAATTAGATATTAACGAATA+TGG | 0.277926 | 1:+16107450 | MsG0180001109.01.T01:CDS |
| GACTATAGATGATGAGAATA+AGG | 0.344772 | 1:+16107347 | MsG0180001109.01.T01:CDS |
| TTATCATCTTGAATTGGAAT+TGG | 0.348432 | 1:+16107581 | MsG0180001109.01.T01:CDS |
| ACTTGATCTGGGGAGATATC+AGG | 0.362752 | 1:-16106368 | None:intergenic |
| CTAGCTCCCTGTACTTGATC+TGG | 0.371115 | 1:-16106380 | None:intergenic |
| TATTGATTATCATCTTGAAT+TGG | 0.376586 | 1:+16107575 | MsG0180001109.01.T01:CDS |
| AAACTAAAGGAGGATATTAT+AGG | 0.388937 | 1:+16107504 | MsG0180001109.01.T01:CDS |
| ATCACATTTAGCCTCTTTGA+TGG | 0.429050 | 1:+16107372 | MsG0180001109.01.T01:CDS |
| ACAAGGTCCAAGTATAAATC+AGG | 0.437514 | 1:-16107534 | None:intergenic |
| ATTCACTGGGAATATACAAT+AGG | 0.447928 | 1:+16106440 | MsG0180001109.01.T01:CDS |
| ATGTTGGTTCTGTCATTCAC+TGG | 0.454099 | 1:+16106426 | MsG0180001109.01.T01:CDS |
| AAAATATTATAGACCTTAGC+AGG | 0.463181 | 1:-16106323 | None:intergenic |
| TGCATGTCCTGATTTATACT+TGG | 0.469493 | 1:+16107527 | MsG0180001109.01.T01:CDS |
| TCACATTTAGCCTCTTTGAT+GGG | 0.477479 | 1:+16107373 | MsG0180001109.01.T01:CDS |
| TAGCTCCCTGTACTTGATCT+GGG | 0.481009 | 1:-16106379 | None:intergenic |
| CTAGATTGCATGAAGGTGAC+TGG | 0.500829 | 1:+16106399 | MsG0180001109.01.T01:CDS |
| GAGAGTTACAACAGTTTCAA+AGG | 0.505492 | 1:+16107405 | MsG0180001109.01.T01:CDS |
| GATCAGAGCACTTCCTGCTA+AGG | 0.539808 | 1:+16106310 | MsG0180001109.01.T01:CDS |
| CACATTTAGCCTCTTTGATG+GGG | 0.545910 | 1:+16107374 | MsG0180001109.01.T01:CDS |
| ATACTTGGACCTTGTTGCAG+AGG | 0.564386 | 1:+16107542 | MsG0180001109.01.T01:CDS |
| TGTTGGTTCTGTCATTCACT+GGG | 0.566404 | 1:+16106427 | MsG0180001109.01.T01:CDS |
| TATCTCCCCAGATCAAGTAC+AGG | 0.569400 | 1:+16106373 | MsG0180001109.01.T01:CDS |
| AATATGGTTCACTTGTGAGA+TGG | 0.591995 | 1:+16107466 | MsG0180001109.01.T01:CDS |
| CACTCACATCCCCATCAAAG+AGG | 0.593465 | 1:-16107383 | None:intergenic |
| TAGATTGCATGAAGGTGACT+GGG | 0.602773 | 1:+16106400 | MsG0180001109.01.T01:CDS |
| AGCTCCCTGTACTTGATCTG+GGG | 0.630841 | 1:-16106378 | None:intergenic |
| GAAGGTGACTGGGAAAATGT+TGG | 0.640506 | 1:+16106410 | MsG0180001109.01.T01:CDS |
| ATCTCCCCAGATCAAGTACA+GGG | 0.645330 | 1:+16106374 | MsG0180001109.01.T01:CDS |
| CAGGGAGCTAGATTGCATGA+AGG | 0.654119 | 1:+16106392 | MsG0180001109.01.T01:CDS |
| TGAGTATGAGAAACTAAAGG+AGG | 0.656053 | 1:+16107494 | MsG0180001109.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTAATAGTTTTTATATTTA+AGG | - | Chr1:16106547-16106566 | None:intergenic | 10.0% |
| !! | AATTATTACAAATATTTGGT+TGG | + | Chr1:16106667-16106686 | MsG0180001109.01.T01:intron | 15.0% |
| !! | AGCTAATTATTACAAATATT+TGG | + | Chr1:16106663-16106682 | MsG0180001109.01.T01:intron | 15.0% |
| !! | ATGAAAAATACTATATTTAG+TGG | - | Chr1:16107107-16107126 | None:intergenic | 15.0% |
| !!! | AATAGTTTTTATATTTAAGG+AGG | - | Chr1:16106544-16106563 | None:intergenic | 15.0% |
| !!! | ATAGTTTTTATATTTAAGGA+GGG | - | Chr1:16106543-16106562 | None:intergenic | 15.0% |
| !! | GAATATACAATAGGTAATTA+AGG | + | Chr1:16106449-16106468 | MsG0180001109.01.T01:intron | 20.0% |
| !! | GAATTAGATATTAACGAATA+TGG | + | Chr1:16107450-16107469 | MsG0180001109.01.T01:CDS | 20.0% |
| !! | TCTCAATTAGAATAAAATAG+TGG | + | Chr1:16107032-16107051 | MsG0180001109.01.T01:intron | 20.0% |
| !!! | TATTGATTATCATCTTGAAT+TGG | + | Chr1:16107575-16107594 | MsG0180001109.01.T01:CDS | 20.0% |
| ! | AAAATATTATAGACCTTAGC+AGG | - | Chr1:16106326-16106345 | None:intergenic | 25.0% |
| ! | AAACTAAAGGAGGATATTAT+AGG | + | Chr1:16107504-16107523 | MsG0180001109.01.T01:CDS | 25.0% |
| ! | TCTTATAACCGACAATAAAT+CGG | - | Chr1:16107008-16107027 | None:intergenic | 25.0% |
| ! | TGTATTATCCGATTTATTGT+CGG | + | Chr1:16106997-16107016 | MsG0180001109.01.T01:intron | 25.0% |
| ! | TTATCATCTTGAATTGGAAT+TGG | + | Chr1:16107581-16107600 | MsG0180001109.01.T01:CDS | 25.0% |
| !! | CTAAGGTCTATAATATTTTC+AGG | + | Chr1:16106327-16106346 | MsG0180001109.01.T01:CDS | 25.0% |
| !!! | TTATTTTTCTTCCAACTCAA+GGG | + | Chr1:16106731-16106750 | MsG0180001109.01.T01:intron | 25.0% |
| !!! | TTTATTTTTCTTCCAACTCA+AGG | + | Chr1:16106730-16106749 | MsG0180001109.01.T01:intron | 25.0% |
| !!! | TTTTGAGTATGAGAAACTAA+AGG | + | Chr1:16107491-16107510 | MsG0180001109.01.T01:CDS | 25.0% |
| ATCAAAGCATATTACAAGCA+AGG | - | Chr1:16106602-16106621 | None:intergenic | 30.0% | |
| ATTCACTGGGAATATACAAT+AGG | + | Chr1:16106440-16106459 | MsG0180001109.01.T01:CDS | 30.0% | |
| GACTATAGATGATGAGAATA+AGG | + | Chr1:16107347-16107366 | MsG0180001109.01.T01:CDS | 30.0% | |
| TTACAAATATTTGGTTGGAG+AGG | + | Chr1:16106672-16106691 | MsG0180001109.01.T01:intron | 30.0% | |
| ! | TTTCTTCATTTTCATCTGCA+GGG | - | Chr1:16107308-16107327 | None:intergenic | 30.0% |
| !! | GACATTAACAAAAGAGTGTT+GGG | - | Chr1:16106580-16106599 | None:intergenic | 30.0% |
| AATATGGTTCACTTGTGAGA+TGG | + | Chr1:16107466-16107485 | MsG0180001109.01.T01:CDS | 35.0% | |
| ACAAGGTCCAAGTATAAATC+AGG | - | Chr1:16107537-16107556 | None:intergenic | 35.0% | |
| ATCACATTTAGCCTCTTTGA+TGG | + | Chr1:16107372-16107391 | MsG0180001109.01.T01:CDS | 35.0% | |
| CAACTCAAGGGTTATAATGA+TGG | + | Chr1:16106743-16106762 | MsG0180001109.01.T01:intron | 35.0% | |
| CATCATTATAACCCTTGAGT+TGG | - | Chr1:16106745-16106764 | None:intergenic | 35.0% | |
| GAGAGTTACAACAGTTTCAA+AGG | + | Chr1:16107405-16107424 | MsG0180001109.01.T01:CDS | 35.0% | |
| GGGTTATAATGATGGCAAAA+CGG | + | Chr1:16106751-16106770 | MsG0180001109.01.T01:intron | 35.0% | |
| GGTTATAATGATGGCAAAAC+GGG | + | Chr1:16106752-16106771 | MsG0180001109.01.T01:intron | 35.0% | |
| TCACATTTAGCCTCTTTGAT+GGG | + | Chr1:16107373-16107392 | MsG0180001109.01.T01:CDS | 35.0% | |
| TGAGTATGAGAAACTAAAGG+AGG | + | Chr1:16107494-16107513 | MsG0180001109.01.T01:CDS | 35.0% | |
| TGCATGTCCTGATTTATACT+TGG | + | Chr1:16107527-16107546 | MsG0180001109.01.T01:CDS | 35.0% | |
| TTGAACCGATCACTAATACA+TGG | + | Chr1:16106831-16106850 | MsG0180001109.01.T01:intron | 35.0% | |
| ! | CTTTCTTCATTTTCATCTGC+AGG | - | Chr1:16107309-16107328 | None:intergenic | 35.0% |
| ! | GGACATTAACAAAAGAGTGT+TGG | - | Chr1:16106581-16106600 | None:intergenic | 35.0% |
| ! | TCCAAATAAGTCTTGCTATG+CGG | - | Chr1:16106797-16106816 | None:intergenic | 35.0% |
| CACATTTAGCCTCTTTGATG+GGG | + | Chr1:16107374-16107393 | MsG0180001109.01.T01:CDS | 40.0% | |
| GCATAGCAAGACTTATTTGG+AGG | + | Chr1:16106796-16106815 | MsG0180001109.01.T01:intron | 40.0% | |
| GTGGACCATGTATTAGTGAT+CGG | - | Chr1:16106839-16106858 | None:intergenic | 40.0% | |
| TAGATTGCATGAAGGTGACT+GGG | + | Chr1:16106400-16106419 | MsG0180001109.01.T01:CDS | 40.0% | |
| TCCGCATAGCAAGACTTATT+TGG | + | Chr1:16106793-16106812 | MsG0180001109.01.T01:intron | 40.0% | |
| TGGAGAGGTGATTAGAGTTT+GGG | + | Chr1:16106687-16106706 | MsG0180001109.01.T01:intron | 40.0% | |
| TTGGAGAGGTGATTAGAGTT+TGG | + | Chr1:16106686-16106705 | MsG0180001109.01.T01:intron | 40.0% | |
| ! | ACGGGTTATATTCGTCATGT+CGG | + | Chr1:16106770-16106789 | MsG0180001109.01.T01:intron | 40.0% |
| !! | ATGTTGGTTCTGTCATTCAC+TGG | + | Chr1:16106426-16106445 | MsG0180001109.01.T01:CDS | 40.0% |
| !! | TCGTTTTTAAGCAGGTTAGG+CGG | - | Chr1:16106863-16106882 | None:intergenic | 40.0% |
| !! | TGTTGGTTCTGTCATTCACT+GGG | + | Chr1:16106427-16106446 | MsG0180001109.01.T01:CDS | 40.0% |
| AACCTGCTTAAAAACGAGGC+AGG | + | Chr1:16106866-16106885 | MsG0180001109.01.T01:intron | 45.0% | |
| ACTTGATCTGGGGAGATATC+AGG | - | Chr1:16106371-16106390 | None:intergenic | 45.0% | |
| AGAGGTGATTAGAGTTTGGG+AGG | + | Chr1:16106690-16106709 | MsG0180001109.01.T01:intron | 45.0% | |
| ATACTTGGACCTTGTTGCAG+AGG | + | Chr1:16107542-16107561 | MsG0180001109.01.T01:CDS | 45.0% | |
| ATCTCCCCAGATCAAGTACA+GGG | + | Chr1:16106374-16106393 | MsG0180001109.01.T01:CDS | 45.0% | |
| CTAGATTGCATGAAGGTGAC+TGG | + | Chr1:16106399-16106418 | MsG0180001109.01.T01:CDS | 45.0% | |
| GAAGGTGACTGGGAAAATGT+TGG | + | Chr1:16106410-16106429 | MsG0180001109.01.T01:CDS | 45.0% | |
| GCCTAACCTGCTTAAAAACG+AGG | + | Chr1:16106862-16106881 | MsG0180001109.01.T01:intron | 45.0% | |
| TAGCTCCCTGTACTTGATCT+GGG | - | Chr1:16106382-16106401 | None:intergenic | 45.0% | |
| TATCTCCCCAGATCAAGTAC+AGG | + | Chr1:16106373-16106392 | MsG0180001109.01.T01:CDS | 45.0% | |
| TGCTTAAAAACGAGGCAGGA+CGG | + | Chr1:16106870-16106889 | MsG0180001109.01.T01:intron | 45.0% | |
| ! | CTTTTGTGACCTCTGCAACA+AGG | - | Chr1:16107554-16107573 | None:intergenic | 45.0% |
| !! | CGTTTTTAAGCAGGTTAGGC+GGG | - | Chr1:16106862-16106881 | None:intergenic | 45.0% |
| !! | GCCTCGTTTTTAAGCAGGTT+AGG | - | Chr1:16106866-16106885 | None:intergenic | 45.0% |
| !! | GTTTTTAAGCAGGTTAGGCG+GGG | - | Chr1:16106861-16106880 | None:intergenic | 45.0% |
| !! | ATATTAATAAAATGTATTTA+AGG | + | Chr1:16107073-16107092 | MsG0180001109.01.T01:intron | 5.0% |
| !! | TATTAATAAAATGTATTTAA+GGG | + | Chr1:16107074-16107093 | MsG0180001109.01.T01:intron | 5.0% |
| !!! | AATAAAATAAAAATTCTTTT+TGG | + | Chr1:16106911-16106930 | MsG0180001109.01.T01:intron | 5.0% |
| AGCTCCCTGTACTTGATCTG+GGG | - | Chr1:16106381-16106400 | None:intergenic | 50.0% | |
| CACTCACATCCCCATCAAAG+AGG | - | Chr1:16107386-16107405 | None:intergenic | 50.0% | |
| CAGGGAGCTAGATTGCATGA+AGG | + | Chr1:16106392-16106411 | MsG0180001109.01.T01:CDS | 50.0% | |
| CTAGCTCCCTGTACTTGATC+TGG | - | Chr1:16106383-16106402 | None:intergenic | 50.0% | |
| ! | GATCAGAGCACTTCCTGCTA+AGG | + | Chr1:16106310-16106329 | MsG0180001109.01.T01:CDS | 50.0% |
| !! | GTCCTGCCTCGTTTTTAAGC+AGG | - | Chr1:16106871-16106890 | None:intergenic | 50.0% |
| TTTAAGCAGGTTAGGCGGGG+TGG | - | Chr1:16106858-16106877 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 16106275 | 16107623 | 16106275 | ID=MsG0180001109.01;Name=MsG0180001109.01 |
| Chr1 | mRNA | 16106275 | 16107623 | 16106275 | ID=MsG0180001109.01.T01;Parent=MsG0180001109.01;Name=MsG0180001109.01.T01;_AED=0.35;_eAED=0.35;_QI=0|0|0|1|1|1|2|0|165 |
| Chr1 | exon | 16106275 | 16106461 | 16106275 | ID=MsG0180001109.01.T01:exon:31198;Parent=MsG0180001109.01.T01 |
| Chr1 | exon | 16107313 | 16107623 | 16107313 | ID=MsG0180001109.01.T01:exon:31199;Parent=MsG0180001109.01.T01 |
| Chr1 | CDS | 16106275 | 16106461 | 16106275 | ID=MsG0180001109.01.T01:cds;Parent=MsG0180001109.01.T01 |
| Chr1 | CDS | 16107313 | 16107623 | 16107313 | ID=MsG0180001109.01.T01:cds;Parent=MsG0180001109.01.T01 |
| Gene Sequence |
| Protein sequence |
