Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001553.01.T02 | XP_003589701.2 | 96.694 | 242 | 8 | 0 | 1 | 242 | 83 | 324 | 9.27E-166 | 471 |
MsG0180001553.01.T01 | XP_003589701.2 | 96.605 | 324 | 11 | 0 | 1 | 324 | 1 | 324 | 0 | 641 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001553.01.T01 | G7LAB3 | 96.594 | 323 | 11 | 0 | 2 | 324 | 1 | 323 | 0.0 | 639 |
MsG0180001553.01.T02 | G7LAB3 | 96.694 | 242 | 8 | 0 | 1 | 242 | 82 | 323 | 4.71e-166 | 471 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180001553.01 | MsG0180003455.01 | 0.804744 | 1.864852e-49 | 9.692295e-47 |
MsG0180001553.01 | MsG0180005531.01 | 0.800688 | 1.281903e-48 | 6.006694e-46 |
MsG0180001553.01 | MsG0280006910.01 | 0.826440 | 2.709077e-54 | 2.540851e-51 |
MsG0180001553.01 | MsG0280007878.01 | 0.836489 | 9.082225e-57 | 1.146253e-53 |
MsG0180001553.01 | MsG0280008107.01 | 0.812931 | 3.307277e-51 | 2.130217e-48 |
MsG0180001553.01 | MsG0280010788.01 | 0.825211 | 5.305234e-54 | 4.804714e-51 |
MsG0180001553.01 | MsG0280010907.01 | 0.804514 | 2.083012e-49 | 1.076054e-46 |
MsG0180001553.01 | MsG0380015196.01 | 0.826189 | 3.109401e-54 | 2.895496e-51 |
MsG0180001553.01 | MsG0580025090.01 | 0.806636 | 7.469860e-50 | 4.074788e-47 |
MsG0180001553.01 | MsG0680030447.01 | 0.838767 | 2.365169e-57 | 3.199814e-54 |
MsG0180001553.01 | MsG0780039257.01 | 0.826983 | 2.011024e-54 | 1.915829e-51 |
MsG0180001553.01 | MsG0880041898.01 | 0.809513 | 1.823170e-50 | 1.072568e-47 |
MsG0180001553.01 | MsG0880043992.01 | 0.804410 | 2.189305e-49 | 1.127965e-46 |
MsG0180001553.01 | MsG0880045607.01 | 0.802105 | 6.569306e-49 | 3.190703e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001553.01.T02 | MTR_1g038260 | 96.694 | 242 | 8 | 0 | 1 | 242 | 82 | 323 | 1.20e-169 | 471 |
MsG0180001553.01.T02 | MTR_1g038290 | 94.175 | 206 | 12 | 0 | 37 | 242 | 116 | 321 | 5.20e-137 | 388 |
MsG0180001553.01.T01 | MTR_1g038260 | 96.594 | 323 | 11 | 0 | 2 | 324 | 1 | 323 | 0.0 | 639 |
MsG0180001553.01.T01 | MTR_1g038290 | 78.549 | 317 | 15 | 1 | 8 | 324 | 58 | 321 | 9.02e-176 | 489 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001553.01.T02 | AT2G41610 | 56.098 | 205 | 87 | 3 | 18 | 220 | 93 | 296 | 3.30e-61 | 195 |
MsG0180001553.01.T01 | AT2G41610 | 50.853 | 293 | 135 | 5 | 18 | 302 | 5 | 296 | 1.75e-86 | 263 |
Find 62 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGTTAGTGTTCTTTGTTTA+AGG | 0.102484 | 1:-23157852 | MsG0180001553.01.T01:CDS |
TTTGCATGCAAGTTTATATT+TGG | 0.149495 | 1:-23158028 | MsG0180001553.01.T01:CDS |
TTGATGTCTTCGACACTTTC+AGG | 0.183475 | 1:-23157967 | MsG0180001553.01.T01:CDS |
TTTGCAGCATCAACAGTTTC+TGG | 0.205539 | 1:-23158054 | MsG0180001553.01.T01:CDS |
AGGATTATATGTAAAATCTT+TGG | 0.207833 | 1:-23157832 | MsG0180001553.01.T01:CDS |
ACTCTCAACATTACTCTTTC+CGG | 0.250688 | 1:+23157706 | None:intergenic |
GGATTATATGTAAAATCTTT+GGG | 0.279614 | 1:-23157831 | MsG0180001553.01.T01:CDS |
CCCATCCAGGTTGGAATGTT+GGG | 0.289826 | 1:+23158499 | None:intergenic |
TCAATGGAAAGATGATAATT+TGG | 0.292595 | 1:+23158366 | None:intergenic |
TGGTCCTGCAATTCTTCTAT+TGG | 0.315925 | 1:-23158139 | MsG0180001553.01.T01:CDS |
ATGTGGCATGAATTTCTTCT+AGG | 0.316936 | 1:+23158475 | None:intergenic |
TGATAATGAAGCTGATTATA+AGG | 0.326199 | 1:-23158094 | MsG0180001553.01.T01:CDS |
TAATGATGAATAGCCTTATC+TGG | 0.349011 | 1:-23158533 | MsG0180001553.01.T01:CDS |
ATGTTGAGAGTTGTTGCTTT+TGG | 0.365055 | 1:-23157694 | MsG0180001553.01.T01:CDS |
GTCCATGATTAAAGTGTTGA+TGG | 0.365851 | 1:-23157788 | MsG0180001553.01.T01:CDS |
ATTATAAGTGGAAGAGATAT+AGG | 0.371010 | 1:+23158216 | None:intergenic |
TTCCATCAACACTTTAATCA+TGG | 0.378693 | 1:+23157786 | None:intergenic |
AGGAAAGAAGCTTTGGTTGT+TGG | 0.396242 | 1:-23157922 | MsG0180001553.01.T01:CDS |
TGTTGATGGAAAGGTTTAGT+TGG | 0.408545 | 1:-23157774 | MsG0180001553.01.T01:CDS |
GCAAATATTAATATTATAAG+TGG | 0.410470 | 1:+23158204 | None:intergenic |
AGAACCAATAGAAGAATTGC+AGG | 0.417814 | 1:+23158135 | None:intergenic |
TCCCATCCAGGTTGGAATGT+TGG | 0.427040 | 1:+23158498 | None:intergenic |
AGACATCAATGCGTCGAAAC+CGG | 0.427081 | 1:+23157981 | None:intergenic |
CAAATGCATAAGTTGGCAAA+TGG | 0.438197 | 1:-23158448 | MsG0180001553.01.T01:CDS |
ATGAATATTATCTCAAGAAA+AGG | 0.452302 | 1:-23158285 | MsG0180001553.01.T01:CDS |
TAATGGTAAGGACAATTGAT+TGG | 0.454273 | 1:+23158411 | None:intergenic |
TAAAATCTTTGGGGAAAATG+TGG | 0.458205 | 1:-23157821 | MsG0180001553.01.T01:CDS |
TATAATATTAATATTTGCAA+AGG | 0.469546 | 1:-23158199 | MsG0180001553.01.T01:CDS |
AAAGAAGCTTTGGTTGTTGG+AGG | 0.477083 | 1:-23157919 | MsG0180001553.01.T01:CDS |
AAGAAATTGTTGTGAAGAGA+AGG | 0.492713 | 1:+23158334 | None:intergenic |
ATAATATTAATATTTGCAAA+GGG | 0.498975 | 1:-23158198 | MsG0180001553.01.T01:CDS |
AAAATCTTTGGGGAAAATGT+GGG | 0.500993 | 1:-23157820 | MsG0180001553.01.T01:CDS |
GAGAAGGACTAAGATATCAA+TGG | 0.505219 | 1:+23158350 | None:intergenic |
TTTATTTATGCTATTTGCAA+GGG | 0.507272 | 1:+23157565 | None:intergenic |
AATTTGTGCAATGGCTTATG+TGG | 0.507413 | 1:-23157620 | MsG0180001553.01.T01:CDS |
ATTTATTTATGCTATTTGCA+AGG | 0.510429 | 1:+23157564 | None:intergenic |
CTTCTAGGTCCCATCCAGGT+TGG | 0.514155 | 1:+23158490 | None:intergenic |
AACTAGTGAAGTACAAAGGC+TGG | 0.516433 | 1:-23157894 | MsG0180001553.01.T01:CDS |
CCCAACATTCCAACCTGGAT+GGG | 0.516887 | 1:-23158499 | MsG0180001553.01.T01:CDS |
ACCCAACATTCCAACCTGGA+TGG | 0.518422 | 1:-23158500 | MsG0180001553.01.T01:CDS |
ATAATCAGCTTCATTATCAA+AGG | 0.521118 | 1:+23158098 | None:intergenic |
TGATTAAAGTGTTGATGGAA+AGG | 0.521545 | 1:-23157783 | MsG0180001553.01.T01:CDS |
ATGGAAAGATGATAATTTGG+AGG | 0.530164 | 1:+23158369 | None:intergenic |
GCGTCGAAACCGGTATAATA+CGG | 0.530535 | 1:+23157991 | None:intergenic |
ATTGTGTTACCGTATTATAC+CGG | 0.533901 | 1:-23158000 | MsG0180001553.01.T01:CDS |
TGTATGTAGGAAAGAAGCTT+TGG | 0.534358 | 1:-23157929 | MsG0180001553.01.T01:CDS |
AAGAAGCTTTGGTTGTTGGA+GGG | 0.534987 | 1:-23157918 | MsG0180001553.01.T01:CDS |
TTTGCTTCATGTTCTCAAAG+AGG | 0.537931 | 1:-23157653 | MsG0180001553.01.T01:CDS |
ATTTCTTCTAGGTCCCATCC+AGG | 0.541890 | 1:+23158486 | None:intergenic |
TTTGATTGCAAAGTCACCAC+CGG | 0.550429 | 1:-23157725 | MsG0180001553.01.T01:CDS |
GCAGGACCAATACAAGAAAG+TGG | 0.558488 | 1:+23158153 | None:intergenic |
TTGTCACATACATAATGGTA+AGG | 0.559614 | 1:+23158399 | None:intergenic |
TTGGCAAATGGAAGAAACAA+TGG | 0.577416 | 1:-23158436 | MsG0180001553.01.T01:CDS |
ATGTAGTCAAATTTGTGCAA+TGG | 0.580987 | 1:-23157629 | MsG0180001553.01.T01:CDS |
GATTATATGTAAAATCTTTG+GGG | 0.598339 | 1:-23157830 | MsG0180001553.01.T01:CDS |
AATGTGCAACATGTGTATGT+AGG | 0.600872 | 1:-23157942 | MsG0180001553.01.T01:CDS |
TGGAAAGATGATAATTTGGA+GGG | 0.601027 | 1:+23158370 | None:intergenic |
GGAAGAGATATAGGACCAGA+TGG | 0.602839 | 1:+23158225 | None:intergenic |
CTCAACATTACTCTTTCCGG+TGG | 0.610843 | 1:+23157709 | None:intergenic |
AAATCTTTGGGGAAAATGTG+GGG | 0.616905 | 1:-23157819 | MsG0180001553.01.T01:CDS |
CAGGACCAATACAAGAAAGT+GGG | 0.627404 | 1:+23158154 | None:intergenic |
GGGAAACTAGTGAAGTACAA+AGG | 0.688754 | 1:-23157898 | MsG0180001553.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATATTAATATTTGCAAA+GGG | - | Chr1:23157903-23157922 | MsG0180001553.01.T01:CDS | 10.0% |
!! | TATAATATTAATATTTGCAA+AGG | - | Chr1:23157902-23157921 | MsG0180001553.01.T01:CDS | 10.0% |
!! | GCAAATATTAATATTATAAG+TGG | + | Chr1:23157900-23157919 | None:intergenic | 15.0% |
!! | AGGATTATATGTAAAATCTT+TGG | - | Chr1:23158269-23158288 | MsG0180001553.01.T01:CDS | 20.0% |
!! | ATGAATATTATCTCAAGAAA+AGG | - | Chr1:23157816-23157835 | MsG0180001553.01.T01:CDS | 20.0% |
!! | GATTATATGTAAAATCTTTG+GGG | - | Chr1:23158271-23158290 | MsG0180001553.01.T01:CDS | 20.0% |
!! | GGATTATATGTAAAATCTTT+GGG | - | Chr1:23158270-23158289 | MsG0180001553.01.T01:CDS | 20.0% |
!!! | AAAAGATTTTTTTTACCATC+TGG | - | Chr1:23157861-23157880 | MsG0180001553.01.T01:CDS | 20.0% |
! | ACTTATGCATTTGAAAAATG+TGG | + | Chr1:23157646-23157665 | None:intergenic | 25.0% |
! | ATAATCAGCTTCATTATCAA+AGG | + | Chr1:23158006-23158025 | None:intergenic | 25.0% |
! | ATTATAAGTGGAAGAGATAT+AGG | + | Chr1:23157888-23157907 | None:intergenic | 25.0% |
! | TCAATGGAAAGATGATAATT+TGG | + | Chr1:23157738-23157757 | None:intergenic | 25.0% |
! | TTTGCATGCAAGTTTATATT+TGG | - | Chr1:23158073-23158092 | MsG0180001553.01.T01:CDS | 25.0% |
!! | TGATAATGAAGCTGATTATA+AGG | - | Chr1:23158007-23158026 | MsG0180001553.01.T01:CDS | 25.0% |
!! | TTGTTAGTGTTCTTTGTTTA+AGG | - | Chr1:23158249-23158268 | MsG0180001553.01.T01:CDS | 25.0% |
!!! | AAGTTTTGTCACATACATAA+TGG | + | Chr1:23157710-23157729 | None:intergenic | 25.0% |
!!! | CATTTTTCAAATGCATAAGT+TGG | - | Chr1:23157646-23157665 | MsG0180001553.01.T01:CDS | 25.0% |
!!! | TAGTTGGATTTTGATAAGTT+TGG | - | Chr1:23158343-23158362 | MsG0180001553.01.T01:CDS | 25.0% |
AAGAAATTGTTGTGAAGAGA+AGG | + | Chr1:23157770-23157789 | None:intergenic | 30.0% | |
ATGGAAAGATGATAATTTGG+AGG | + | Chr1:23157735-23157754 | None:intergenic | 30.0% | |
ATGTAGTCAAATTTGTGCAA+TGG | - | Chr1:23158472-23158491 | MsG0180001553.01.T01:CDS | 30.0% | |
ATTGTGTTACCGTATTATAC+CGG | - | Chr1:23158101-23158120 | MsG0180001553.01.T01:CDS | 30.0% | |
TAATGGTAAGGACAATTGAT+TGG | + | Chr1:23157693-23157712 | None:intergenic | 30.0% | |
TGGAAAGATGATAATTTGGA+GGG | + | Chr1:23157734-23157753 | None:intergenic | 30.0% | |
TGTGGCACAAAAATATAGAT+TGG | - | Chr1:23158499-23158518 | MsG0180001553.01.T01:CDS | 30.0% | |
TTCCATCAACACTTTAATCA+TGG | + | Chr1:23158318-23158337 | None:intergenic | 30.0% | |
TTGTCACATACATAATGGTA+AGG | + | Chr1:23157705-23157724 | None:intergenic | 30.0% | |
! | AAAATCTTTGGGGAAAATGT+GGG | - | Chr1:23158281-23158300 | MsG0180001553.01.T01:CDS | 30.0% |
! | ATTTTCCCACTTTCTTGTAT+TGG | - | Chr1:23157942-23157961 | MsG0180001553.01.T01:CDS | 30.0% |
! | TAAAATCTTTGGGGAAAATG+TGG | - | Chr1:23158280-23158299 | MsG0180001553.01.T01:CDS | 30.0% |
!! | TGATTAAAGTGTTGATGGAA+AGG | - | Chr1:23158318-23158337 | MsG0180001553.01.T01:CDS | 30.0% |
AATGTGCAACATGTGTATGT+AGG | - | Chr1:23158159-23158178 | MsG0180001553.01.T01:CDS | 35.0% | |
AATTTGTGCAATGGCTTATG+TGG | - | Chr1:23158481-23158500 | MsG0180001553.01.T01:CDS | 35.0% | |
ACTCTCAACATTACTCTTTC+CGG | + | Chr1:23158398-23158417 | None:intergenic | 35.0% | |
AGAACCAATAGAAGAATTGC+AGG | + | Chr1:23157969-23157988 | None:intergenic | 35.0% | |
ATGTGGCATGAATTTCTTCT+AGG | + | Chr1:23157629-23157648 | None:intergenic | 35.0% | |
GAGAAGGACTAAGATATCAA+TGG | + | Chr1:23157754-23157773 | None:intergenic | 35.0% | |
TGTATGTAGGAAAGAAGCTT+TGG | - | Chr1:23158172-23158191 | MsG0180001553.01.T01:CDS | 35.0% | |
TTGGCAAATGGAAGAAACAA+TGG | - | Chr1:23157665-23157684 | MsG0180001553.01.T01:CDS | 35.0% | |
TTTGCTTCATGTTCTCAAAG+AGG | - | Chr1:23158448-23158467 | MsG0180001553.01.T01:CDS | 35.0% | |
! | AAATCTTTGGGGAAAATGTG+GGG | - | Chr1:23158282-23158301 | MsG0180001553.01.T01:CDS | 35.0% |
! | CAAATGCATAAGTTGGCAAA+TGG | - | Chr1:23157653-23157672 | MsG0180001553.01.T01:CDS | 35.0% |
! | TGTTGATGGAAAGGTTTAGT+TGG | - | Chr1:23158327-23158346 | MsG0180001553.01.T01:CDS | 35.0% |
!! | GTCCATGATTAAAGTGTTGA+TGG | - | Chr1:23158313-23158332 | MsG0180001553.01.T01:CDS | 35.0% |
!!! | ATGTTGAGAGTTGTTGCTTT+TGG | - | Chr1:23158407-23158426 | MsG0180001553.01.T01:CDS | 35.0% |
!!! | GTTGGAATGTTGGGTTTTTT+GGG | + | Chr1:23157596-23157615 | None:intergenic | 35.0% |
AAAAACCCAACATTCCAACC+TGG | - | Chr1:23157597-23157616 | MsG0180001553.01.T01:CDS | 40.0% | |
AACTAGTGAAGTACAAAGGC+TGG | - | Chr1:23158207-23158226 | MsG0180001553.01.T01:CDS | 40.0% | |
CAGGACCAATACAAGAAAGT+GGG | + | Chr1:23157950-23157969 | None:intergenic | 40.0% | |
GGGAAACTAGTGAAGTACAA+AGG | - | Chr1:23158203-23158222 | MsG0180001553.01.T01:CDS | 40.0% | |
TGGTCCTGCAATTCTTCTAT+TGG | - | Chr1:23157962-23157981 | MsG0180001553.01.T01:CDS | 40.0% | |
TTGATGTCTTCGACACTTTC+AGG | - | Chr1:23158134-23158153 | MsG0180001553.01.T01:CDS | 40.0% | |
TTTGATTGCAAAGTCACCAC+CGG | - | Chr1:23158376-23158395 | MsG0180001553.01.T01:CDS | 40.0% | |
TTTGCAGCATCAACAGTTTC+TGG | - | Chr1:23158047-23158066 | MsG0180001553.01.T01:CDS | 40.0% | |
! | AAAGAAGCTTTGGTTGTTGG+AGG | - | Chr1:23158182-23158201 | MsG0180001553.01.T01:CDS | 40.0% |
! | AAGAAGCTTTGGTTGTTGGA+GGG | - | Chr1:23158183-23158202 | MsG0180001553.01.T01:CDS | 40.0% |
! | AGGAAAGAAGCTTTGGTTGT+TGG | - | Chr1:23158179-23158198 | MsG0180001553.01.T01:CDS | 40.0% |
!!! | GGTTGGAATGTTGGGTTTTT+TGG | + | Chr1:23157597-23157616 | None:intergenic | 40.0% |
!!! | TTGAGAGTTGTTGCTTTTGG+AGG | - | Chr1:23158410-23158429 | MsG0180001553.01.T01:CDS | 40.0% |
AGACATCAATGCGTCGAAAC+CGG | + | Chr1:23158123-23158142 | None:intergenic | 45.0% | |
ATTTCTTCTAGGTCCCATCC+AGG | + | Chr1:23157618-23157637 | None:intergenic | 45.0% | |
CTCAACATTACTCTTTCCGG+TGG | + | Chr1:23158395-23158414 | None:intergenic | 45.0% | |
GCAGGACCAATACAAGAAAG+TGG | + | Chr1:23157951-23157970 | None:intergenic | 45.0% | |
GCGTCGAAACCGGTATAATA+CGG | + | Chr1:23158113-23158132 | None:intergenic | 45.0% | |
GGAAGAGATATAGGACCAGA+TGG | + | Chr1:23157879-23157898 | None:intergenic | 45.0% | |
!!! | GGTTTTTTGGGAGCCAGATA+AGG | + | Chr1:23157584-23157603 | None:intergenic | 45.0% |
ACCCAACATTCCAACCTGGA+TGG | - | Chr1:23157601-23157620 | MsG0180001553.01.T01:CDS | 50.0% | |
CCCAACATTCCAACCTGGAT+GGG | - | Chr1:23157602-23157621 | MsG0180001553.01.T01:CDS | 50.0% | |
! | CCCATCCAGGTTGGAATGTT+GGG | + | Chr1:23157605-23157624 | None:intergenic | 50.0% |
! | TCCCATCCAGGTTGGAATGT+TGG | + | Chr1:23157606-23157625 | None:intergenic | 50.0% |
CTTCTAGGTCCCATCCAGGT+TGG | + | Chr1:23157614-23157633 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 23157570 | 23158553 | 23157570 | ID=MsG0180001553.01;Name=MsG0180001553.01 |
Chr1 | mRNA | 23157570 | 23158553 | 23157570 | ID=MsG0180001553.01.T01;Parent=MsG0180001553.01;Name=MsG0180001553.01.T01;_AED=0.14;_eAED=0.14;_QI=0|-1|0|1|-1|0|1|0|327 |
Chr1 | exon | 23157570 | 23158553 | 23157570 | ID=MsG0180001553.01.T01:exon:40428;Parent=MsG0180001553.01.T01 |
Chr1 | CDS | 23157570 | 23158553 | 23157570 | ID=MsG0180001553.01.T01:cds;Parent=MsG0180001553.01.T01 |
Chr1 | mRNA | 23157570 | 23158307 | 23157570 | ID=MsG0180001553.01.T02;Parent=MsG0180001553.01;Name=MsG0180001553.01.T02;_AED=0.23;_eAED=0.23;_QI=0|-1|0|1|-1|0|1|0|245 |
Chr1 | exon | 23157570 | 23158307 | 23157570 | ID=MsG0180001553.01.T02:exon:40429;Parent=MsG0180001553.01.T02 |
Chr1 | CDS | 23157570 | 23158307 | 23157570 | ID=MsG0180001553.01.T02:cds;Parent=MsG0180001553.01.T02 |
Gene Sequence |
Protein sequence |