Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015196.01.T01 | XP_003600660.1 | 84.667 | 150 | 3 | 1 | 1 | 150 | 1 | 130 | 5.20E-82 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015196.01.T01 | F4I2H7 | 45.205 | 73 | 38 | 2 | 79 | 150 | 645 | 716 | 6.14E-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015196.01.T01 | G7J8N4 | 84.667 | 150 | 3 | 1 | 1 | 150 | 1 | 130 | 2.48e-82 | 249 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048856.01 | MsG0380015196.01 | 0.813351 | 2.675274e-51 | 1.742950e-48 |
| MsG0080048874.01 | MsG0380015196.01 | 0.817728 | 2.836791e-52 | 2.082469e-49 |
| MsG0180000065.01 | MsG0380015196.01 | 0.805350 | 1.393018e-49 | 7.353038e-47 |
| MsG0180000091.01 | MsG0380015196.01 | 0.812747 | 3.628179e-51 | 2.325758e-48 |
| MsG0180000145.01 | MsG0380015196.01 | 0.828042 | 1.120263e-54 | 1.100781e-51 |
| MsG0180000295.01 | MsG0380015196.01 | 0.803992 | 2.675604e-49 | 1.363880e-46 |
| MsG0180000334.01 | MsG0380015196.01 | 0.816067 | 6.692706e-52 | 4.694684e-49 |
| MsG0180000335.01 | MsG0380015196.01 | 0.807095 | 5.975758e-50 | 3.298770e-47 |
| MsG0180000470.01 | MsG0380015196.01 | 0.850248 | 1.919928e-60 | 3.737571e-57 |
| MsG0180001086.01 | MsG0380015196.01 | 0.804795 | 1.819717e-49 | 9.469702e-47 |
| MsG0180001553.01 | MsG0380015196.01 | 0.826189 | 3.109401e-54 | 2.895496e-51 |
| MsG0180001892.01 | MsG0380015196.01 | 0.826453 | 2.690629e-54 | 2.524402e-51 |
| MsG0180002377.01 | MsG0380015196.01 | 0.800157 | 1.643901e-48 | 7.599805e-46 |
| MsG0180003455.01 | MsG0380015196.01 | 0.835538 | 1.583019e-56 | 1.941505e-53 |
| MsG0180003669.01 | MsG0380015196.01 | 0.808503 | 2.999564e-50 | 1.718027e-47 |
| MsG0180003797.01 | MsG0380015196.01 | 0.831850 | 1.320997e-55 | 1.451312e-52 |
| MsG0180003920.01 | MsG0380015196.01 | 0.807255 | 5.527834e-50 | 3.064284e-47 |
| MsG0180004264.01 | MsG0380015196.01 | 0.820824 | 5.591097e-53 | 4.471722e-50 |
| MsG0180004389.01 | MsG0380015196.01 | 0.821219 | 4.536188e-53 | 3.668242e-50 |
| MsG0180004463.01 | MsG0380015196.01 | 0.813130 | 2.991298e-51 | 1.936990e-48 |
| MsG0180004754.01 | MsG0380015196.01 | 0.833211 | 6.074910e-56 | 6.948982e-53 |
| MsG0180005185.01 | MsG0380015196.01 | 0.804518 | 2.079158e-49 | 1.074168e-46 |
| MsG0180005393.01 | MsG0380015196.01 | 0.802077 | 6.658488e-49 | 3.231758e-46 |
| MsG0180005445.01 | MsG0380015196.01 | 0.800023 | 1.750553e-48 | 8.065534e-46 |
| MsG0280010698.01 | MsG0380015196.01 | 0.829605 | 4.687057e-55 | 4.820655e-52 |
| MsG0280010779.01 | MsG0380015196.01 | 0.833357 | 5.587169e-56 | 6.418983e-53 |
| MsG0280010788.01 | MsG0380015196.01 | 0.815470 | 9.092217e-52 | 6.274701e-49 |
| MsG0280010907.01 | MsG0380015196.01 | 0.813532 | 2.440607e-51 | 1.597956e-48 |
| MsG0280011014.01 | MsG0380015196.01 | 0.801235 | 9.908359e-49 | 4.707815e-46 |
| MsG0280011258.01 | MsG0380015196.01 | 0.808199 | 3.483168e-50 | 1.979204e-47 |
| MsG0280011282.01 | MsG0380015196.01 | 0.812650 | 3.809709e-51 | 2.435825e-48 |
| MsG0280011305.01 | MsG0380015196.01 | 0.850020 | 2.223979e-60 | 4.297236e-57 |
| MsG0380011648.01 | MsG0380015196.01 | 0.806287 | 8.849648e-50 | 4.784982e-47 |
| MsG0380012101.01 | MsG0380015196.01 | 0.801741 | 7.802436e-49 | 3.754709e-46 |
| MsG0380012460.01 | MsG0380015196.01 | 0.812199 | 4.781287e-51 | 3.020592e-48 |
| MsG0380013475.01 | MsG0380015196.01 | 0.827131 | 1.853442e-54 | 1.773275e-51 |
| MsG0380013549.01 | MsG0380015196.01 | 0.819070 | 1.408701e-52 | 1.073022e-49 |
| MsG0380014097.01 | MsG0380015196.01 | 0.822572 | 2.204574e-53 | 1.852484e-50 |
| MsG0380014495.01 | MsG0380015196.01 | 0.804322 | 2.283406e-49 | 1.173838e-46 |
| MsG0380014537.01 | MsG0380015196.01 | 0.824762 | 6.771561e-54 | 6.054766e-51 |
| MsG0380014573.01 | MsG0380015196.01 | 0.814455 | 1.527069e-51 | 1.025138e-48 |
| MsG0380014701.01 | MsG0380015196.01 | 0.807421 | 5.095923e-50 | 2.837153e-47 |
| MsG0380014948.01 | MsG0380015196.01 | 0.810541 | 1.094994e-50 | 6.618416e-48 |
| MsG0380014949.01 | MsG0380015196.01 | 0.808857 | 2.519878e-50 | 1.456684e-47 |
| MsG0380015196.01 | MsG0380015332.01 | 0.829174 | 5.964551e-55 | 6.057906e-52 |
| MsG0380015196.01 | MsG0380015440.01 | 0.805695 | 1.179177e-49 | 6.280092e-47 |
| MsG0380015196.01 | MsG0380015555.01 | 0.821321 | 4.295634e-53 | 3.483391e-50 |
| MsG0380015196.01 | MsG0380015677.01 | 0.828911 | 6.907415e-55 | 6.960343e-52 |
| MsG0380015196.01 | MsG0380015808.01 | 0.804537 | 2.059749e-49 | 1.064689e-46 |
| MsG0380015196.01 | MsG0380015944.01 | 0.807324 | 5.342982e-50 | 2.967226e-47 |
| MsG0380015196.01 | MsG0380016247.01 | 0.805037 | 1.619501e-49 | 8.480137e-47 |
| MsG0380015196.01 | MsG0380016517.01 | 0.818966 | 1.487555e-52 | 1.129971e-49 |
| MsG0380015196.01 | MsG0380016910.01 | 0.805115 | 1.559683e-49 | 8.183407e-47 |
| MsG0380015196.01 | MsG0380016970.01 | 0.804365 | 2.236884e-49 | 1.151202e-46 |
| MsG0380015196.01 | MsG0380016994.01 | 0.812630 | 3.849605e-51 | 2.460052e-48 |
| MsG0380015196.01 | MsG0380017266.01 | -0.805114 | 1.560661e-49 | 8.188246e-47 |
| MsG0380015196.01 | MsG0480018128.01 | 0.800980 | 1.117353e-48 | 5.275078e-46 |
| MsG0380015196.01 | MsG0480018163.01 | 0.802693 | 4.969528e-49 | 2.450216e-46 |
| MsG0380015196.01 | MsG0480018183.01 | 0.829215 | 5.829388e-55 | 5.927890e-52 |
| MsG0380015196.01 | MsG0480018251.01 | 0.801467 | 8.882595e-49 | 4.245013e-46 |
| MsG0380015196.01 | MsG0480018313.01 | 0.836137 | 1.116202e-56 | 1.394007e-53 |
| MsG0380015196.01 | MsG0480018513.01 | 0.805214 | 1.487494e-49 | 7.824303e-47 |
| MsG0380015196.01 | MsG0480019350.01 | 0.827249 | 1.736699e-54 | 1.667477e-51 |
| MsG0380015196.01 | MsG0480019603.01 | 0.824496 | 7.822573e-54 | 6.940321e-51 |
| MsG0380015196.01 | MsG0480020465.01 | 0.802683 | 4.994877e-49 | 2.462023e-46 |
| MsG0380015196.01 | MsG0480020739.01 | 0.820319 | 7.304210e-53 | 5.760373e-50 |
| MsG0380015196.01 | MsG0480020909.01 | 0.828112 | 1.077426e-54 | 1.060851e-51 |
| MsG0380015196.01 | MsG0480021056.01 | 0.837473 | 5.090898e-57 | 6.620411e-54 |
| MsG0380015196.01 | MsG0480021784.01 | 0.806473 | 8.085670e-50 | 4.392734e-47 |
| MsG0380015196.01 | MsG0480021870.01 | 0.800374 | 1.484919e-48 | 6.903236e-46 |
| MsG0380015196.01 | MsG0480021923.01 | 0.801639 | 8.187076e-49 | 3.929711e-46 |
| MsG0380015196.01 | MsG0480022068.01 | 0.804776 | 1.835995e-49 | 9.549763e-47 |
| MsG0380015196.01 | MsG0480022686.01 | -0.801028 | 1.092306e-48 | 5.163146e-46 |
| MsG0380015196.01 | MsG0480022855.01 | 0.800316 | 1.526275e-48 | 7.085024e-46 |
| MsG0380015196.01 | MsG0480023172.01 | 0.815102 | 1.097622e-51 | 7.497792e-49 |
| MsG0380015196.01 | MsG0480023463.01 | 0.833613 | 4.821795e-56 | 5.581864e-53 |
| MsG0380015196.01 | MsG0480023488.01 | 0.843538 | 1.317550e-58 | 2.067919e-55 |
| MsG0380015196.01 | MsG0480023503.01 | 0.801208 | 1.003684e-48 | 4.765451e-46 |
| MsG0380015196.01 | MsG0480023654.01 | 0.806475 | 8.080234e-50 | 4.389921e-47 |
| MsG0380015196.01 | MsG0480023718.01 | 0.810223 | 1.282283e-50 | 7.685456e-48 |
| MsG0380015196.01 | MsG0580024038.01 | 0.819950 | 8.871410e-53 | 6.925347e-50 |
| MsG0380015196.01 | MsG0580024157.01 | 0.800913 | 1.152810e-48 | 5.433178e-46 |
| MsG0380015196.01 | MsG0580024370.01 | 0.819130 | 1.365286e-52 | 1.041645e-49 |
| MsG0380015196.01 | MsG0580024418.01 | 0.816955 | 4.234328e-52 | 3.043445e-49 |
| MsG0380015196.01 | MsG0580024690.01 | 0.855392 | 6.507403e-62 | 1.500287e-58 |
| MsG0380015196.01 | MsG0580025260.01 | 0.802218 | 6.226670e-49 | 3.033022e-46 |
| MsG0380015196.01 | MsG0580025332.01 | 0.802624 | 5.135074e-49 | 2.527386e-46 |
| MsG0380015196.01 | MsG0580025532.01 | 0.802583 | 5.237779e-49 | 2.575183e-46 |
| MsG0380015196.01 | MsG0580025555.01 | 0.808924 | 2.438458e-50 | 1.412093e-47 |
| MsG0380015196.01 | MsG0580025723.01 | 0.804221 | 2.397121e-49 | 1.229037e-46 |
| MsG0380015196.01 | MsG0580025899.01 | 0.812606 | 3.895067e-51 | 2.487518e-48 |
| MsG0380015196.01 | MsG0580025987.01 | 0.810156 | 1.325806e-50 | 7.932829e-48 |
| MsG0380015196.01 | MsG0580026089.01 | 0.811256 | 7.666969e-51 | 4.723174e-48 |
| MsG0380015196.01 | MsG0580026593.01 | 0.813911 | 2.014181e-51 | 1.332263e-48 |
| MsG0380015196.01 | MsG0580026910.01 | 0.806274 | 8.906669e-50 | 4.814365e-47 |
| MsG0380015196.01 | MsG0580027211.01 | 0.810879 | 9.254119e-51 | 5.644670e-48 |
| MsG0380015196.01 | MsG0580027243.01 | 0.813672 | 2.274055e-51 | 1.494502e-48 |
| MsG0380015196.01 | MsG0580027431.01 | 0.823164 | 1.605355e-53 | 1.371613e-50 |
| MsG0380015196.01 | MsG0580027833.01 | 0.806825 | 6.816677e-50 | 3.736808e-47 |
| MsG0380015196.01 | MsG0580028176.01 | 0.804094 | 2.547354e-49 | 1.301905e-46 |
| MsG0380015196.01 | MsG0580028517.01 | 0.835628 | 1.502277e-56 | 1.847438e-53 |
| MsG0380015196.01 | MsG0580029640.01 | 0.817546 | 3.117263e-52 | 2.276956e-49 |
| MsG0380015196.01 | MsG0680030447.01 | 0.849521 | 3.066168e-60 | 5.827965e-57 |
| MsG0380015196.01 | MsG0680030674.01 | 0.807740 | 4.361791e-50 | 2.448633e-47 |
| MsG0380015196.01 | MsG0680030677.01 | 0.800522 | 1.385576e-48 | 6.465310e-46 |
| MsG0380015196.01 | MsG0680030880.01 | 0.810968 | 8.851526e-51 | 5.412146e-48 |
| MsG0380015196.01 | MsG0680031108.01 | 0.810210 | 1.290599e-50 | 7.732724e-48 |
| MsG0380015196.01 | MsG0680031431.01 | 0.819448 | 1.155145e-52 | 8.891943e-50 |
| MsG0380015196.01 | MsG0680031617.01 | 0.839842 | 1.243870e-57 | 1.739234e-54 |
| MsG0380015196.01 | MsG0680031618.01 | 0.811206 | 7.861182e-51 | 4.836476e-48 |
| MsG0380015196.01 | MsG0680033412.01 | 0.817803 | 2.728051e-52 | 2.006789e-49 |
| MsG0380015196.01 | MsG0680033928.01 | 0.813703 | 2.238079e-51 | 1.472133e-48 |
| MsG0380015196.01 | MsG0680034842.01 | 0.816697 | 4.838858e-52 | 3.452991e-49 |
| MsG0380015196.01 | MsG0680035123.01 | 0.819752 | 9.846619e-53 | 7.644086e-50 |
| MsG0380015196.01 | MsG0680035475.01 | 0.806924 | 6.494792e-50 | 3.569447e-47 |
| MsG0380015196.01 | MsG0680035573.01 | 0.821230 | 4.510280e-53 | 3.648255e-50 |
| MsG0380015196.01 | MsG0680035692.01 | 0.830234 | 3.293189e-55 | 3.449477e-52 |
| MsG0380015196.01 | MsG0780036018.01 | 0.804317 | 2.289180e-49 | 1.176625e-46 |
| MsG0380015196.01 | MsG0780036201.01 | 0.828212 | 1.019397e-54 | 1.006609e-51 |
| MsG0380015196.01 | MsG0780036477.01 | 0.811797 | 5.848073e-51 | 3.654468e-48 |
| MsG0380015196.01 | MsG0780036602.01 | 0.803820 | 2.904582e-49 | 1.474042e-46 |
| MsG0380015196.01 | MsG0780036752.01 | 0.814781 | 1.293605e-51 | 8.760460e-49 |
| MsG0380015196.01 | MsG0780036815.01 | 0.811486 | 6.835337e-51 | 4.236615e-48 |
| MsG0380015196.01 | MsG0780037054.01 | 0.832427 | 9.511406e-56 | 1.062742e-52 |
| MsG0380015196.01 | MsG0780038386.01 | 0.823720 | 1.189928e-53 | 1.032912e-50 |
| MsG0380015196.01 | MsG0780038401.01 | 0.810652 | 1.036319e-50 | 6.282594e-48 |
| MsG0380015196.01 | MsG0780038424.01 | 0.835942 | 1.250907e-56 | 1.552898e-53 |
| MsG0380015196.01 | MsG0780038439.01 | 0.824154 | 9.414066e-54 | 8.271372e-51 |
| MsG0380015196.01 | MsG0780038602.01 | 0.831876 | 1.301588e-55 | 1.431101e-52 |
| MsG0380015196.01 | MsG0780038603.01 | 0.805173 | 1.517208e-49 | 7.972383e-47 |
| MsG0380015196.01 | MsG0780038690.01 | 0.827679 | 1.369580e-54 | 1.331454e-51 |
| MsG0380015196.01 | MsG0780038691.01 | 0.856135 | 3.946870e-62 | 9.325765e-59 |
| MsG0380015196.01 | MsG0780039059.01 | 0.822191 | 2.702886e-53 | 2.246295e-50 |
| MsG0380015196.01 | MsG0780039170.01 | 0.803170 | 3.961297e-49 | 1.977015e-46 |
| MsG0380015196.01 | MsG0780039178.01 | 0.801793 | 7.614349e-49 | 3.669113e-46 |
| MsG0380015196.01 | MsG0780039243.01 | 0.845649 | 3.560545e-59 | 5.974572e-56 |
| MsG0380015196.01 | MsG0780039257.01 | 0.874001 | 9.498272e-68 | 4.206526e-64 |
| MsG0380015196.01 | MsG0780039443.01 | 0.821890 | 3.173778e-53 | 2.615308e-50 |
| MsG0380015196.01 | MsG0780039655.01 | 0.828440 | 8.979809e-55 | 8.926545e-52 |
| MsG0380015196.01 | MsG0780039866.01 | 0.805772 | 1.136174e-49 | 6.062956e-47 |
| MsG0380015196.01 | MsG0780040057.01 | 0.800228 | 1.589968e-48 | 7.363997e-46 |
| MsG0380015196.01 | MsG0780040261.01 | 0.810008 | 1.427091e-50 | 8.506323e-48 |
| MsG0380015196.01 | MsG0780040576.01 | -0.800945 | 1.135988e-48 | 5.358113e-46 |
| MsG0380015196.01 | MsG0780040669.01 | 0.841545 | 4.454411e-58 | 6.567007e-55 |
| MsG0380015196.01 | MsG0780041229.01 | 0.811929 | 5.473999e-51 | 3.432667e-48 |
| MsG0380015196.01 | MsG0780041764.01 | 0.833083 | 6.536011e-56 | 7.448242e-53 |
| MsG0380015196.01 | MsG0880041986.01 | 0.816842 | 4.488432e-52 | 3.215888e-49 |
| MsG0380015196.01 | MsG0880042091.01 | 0.827626 | 1.410110e-54 | 1.368596e-51 |
| MsG0380015196.01 | MsG0880042412.01 | 0.843712 | 1.184051e-58 | 1.868514e-55 |
| MsG0380015196.01 | MsG0880042520.01 | 0.806190 | 9.279790e-50 | 5.005182e-47 |
| MsG0380015196.01 | MsG0880042698.01 | 0.825206 | 5.318024e-54 | 4.815591e-51 |
| MsG0380015196.01 | MsG0880042939.01 | 0.826225 | 3.049234e-54 | 2.842286e-51 |
| MsG0380015196.01 | MsG0880042961.01 | 0.811224 | 7.792374e-51 | 4.796274e-48 |
| MsG0380015196.01 | MsG0880043937.01 | 0.813442 | 2.554799e-51 | 1.668640e-48 |
| MsG0380015196.01 | MsG0880043941.01 | 0.822932 | 1.817510e-53 | 1.542839e-50 |
| MsG0380015196.01 | MsG0880043992.01 | 0.820856 | 5.498525e-53 | 4.401748e-50 |
| MsG0380015196.01 | MsG0880043994.01 | 0.802386 | 5.749664e-49 | 2.812924e-46 |
| MsG0380015196.01 | MsG0880044174.01 | 0.806841 | 6.763857e-50 | 3.709434e-47 |
| MsG0380015196.01 | MsG0880044210.01 | 0.826127 | 3.216239e-54 | 2.989692e-51 |
| MsG0380015196.01 | MsG0880044574.01 | 0.800559 | 1.361378e-48 | 6.358467e-46 |
| MsG0380015196.01 | MsG0880045372.01 | 0.838998 | 2.061180e-57 | 2.808211e-54 |
| MsG0380015196.01 | MsG0880045453.01 | 0.800037 | 1.739298e-48 | 8.016520e-46 |
| MsG0380015196.01 | MsG0880045639.01 | 0.805994 | 1.020100e-49 | 5.474766e-47 |
| MsG0380015196.01 | MsG0880045895.01 | 0.806028 | 1.003783e-49 | 5.391616e-47 |
| MsG0380015196.01 | MsG0880046020.01 | 0.806683 | 7.302504e-50 | 3.988370e-47 |
| MsG0380015196.01 | MsG0880046803.01 | 0.805134 | 1.546042e-49 | 8.115771e-47 |
| MsG0280006567.01 | MsG0380015196.01 | 0.808979 | 2.372936e-50 | 1.376209e-47 |
| MsG0280006769.01 | MsG0380015196.01 | 0.809839 | 1.551373e-50 | 9.206211e-48 |
| MsG0280006770.01 | MsG0380015196.01 | 0.801324 | 9.503370e-49 | 4.525385e-46 |
| MsG0280006910.01 | MsG0380015196.01 | 0.835908 | 1.275636e-56 | 1.582065e-53 |
| MsG0280007072.01 | MsG0380015196.01 | 0.817494 | 3.202381e-52 | 2.335818e-49 |
| MsG0280007529.01 | MsG0380015196.01 | 0.800253 | 1.571938e-48 | 7.285051e-46 |
| MsG0280007878.01 | MsG0380015196.01 | 0.831744 | 1.403607e-55 | 1.537195e-52 |
| MsG0280007955.01 | MsG0380015196.01 | 0.823421 | 1.398121e-53 | 1.203153e-50 |
| MsG0280008378.01 | MsG0380015196.01 | 0.804896 | 1.733663e-49 | 9.046030e-47 |
| MsG0280008615.01 | MsG0380015196.01 | 0.822344 | 2.490701e-53 | 2.079226e-50 |
| MsG0280009514.01 | MsG0380015196.01 | 0.817592 | 3.044139e-52 | 2.226241e-49 |
| MsG0280009748.01 | MsG0380015196.01 | 0.804273 | 2.338301e-49 | 1.200491e-46 |
| MsG0280009794.01 | MsG0380015196.01 | 0.832664 | 8.309530e-56 | 9.350885e-53 |
| MsG0280010443.01 | MsG0380015196.01 | 0.810538 | 1.096667e-50 | 6.628036e-48 |
| MsG0280010491.01 | MsG0380015196.01 | 0.850082 | 2.136227e-60 | 4.136143e-57 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015196.01.T01 | MTR_3g064800 | 84.667 | 150 | 3 | 1 | 1 | 150 | 1 | 130 | 6.29e-86 | 249 |
| MsG0380015196.01.T01 | MTR_3g064800 | 98.000 | 100 | 2 | 0 | 51 | 150 | 1 | 100 | 9.90e-68 | 202 |
| MsG0380015196.01.T01 | MTR_3g064800 | 97.980 | 99 | 2 | 0 | 52 | 150 | 14 | 112 | 4.47e-67 | 201 |
| MsG0380015196.01.T01 | MTR_6g015010 | 56.098 | 82 | 36 | 0 | 69 | 150 | 366 | 447 | 8.26e-25 | 99.0 |
| MsG0380015196.01.T01 | MTR_7g013070 | 52.439 | 82 | 39 | 0 | 69 | 150 | 337 | 418 | 1.80e-21 | 89.7 |
| MsG0380015196.01.T01 | MTR_4g094612 | 87.500 | 32 | 4 | 0 | 119 | 150 | 1 | 32 | 1.18e-14 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015196.01.T01 | AT5G37478 | 61.905 | 126 | 42 | 2 | 31 | 150 | 14 | 139 | 2.65e-47 | 151 |
| MsG0380015196.01.T01 | AT5G37478 | 66.981 | 106 | 29 | 2 | 51 | 150 | 1 | 106 | 2.07e-43 | 140 |
| MsG0380015196.01.T01 | AT5G37478 | 64.646 | 99 | 35 | 0 | 52 | 150 | 21 | 119 | 3.78e-40 | 132 |
| MsG0380015196.01.T01 | AT3G01015 | 56.410 | 78 | 34 | 0 | 73 | 150 | 366 | 443 | 4.43e-22 | 91.7 |
| MsG0380015196.01.T01 | AT5G15510 | 52.564 | 78 | 37 | 0 | 73 | 150 | 376 | 453 | 5.74e-21 | 88.2 |
| MsG0380015196.01.T01 | AT5G15510 | 52.564 | 78 | 37 | 0 | 73 | 150 | 376 | 453 | 5.74e-21 | 88.2 |
| MsG0380015196.01.T01 | AT5G15510 | 52.564 | 78 | 37 | 0 | 73 | 150 | 376 | 453 | 6.07e-21 | 88.2 |
| MsG0380015196.01.T01 | AT5G15510 | 52.564 | 78 | 37 | 0 | 73 | 150 | 376 | 453 | 6.78e-21 | 88.2 |
| MsG0380015196.01.T01 | AT5G37478 | 55.844 | 77 | 28 | 2 | 31 | 101 | 14 | 90 | 2.03e-17 | 73.9 |
| MsG0380015196.01.T01 | AT1G03780 | 45.205 | 73 | 38 | 2 | 79 | 150 | 645 | 716 | 6.26e-12 | 62.8 |
| MsG0380015196.01.T01 | AT1G03780 | 45.205 | 73 | 38 | 2 | 79 | 150 | 645 | 716 | 6.86e-12 | 62.4 |
Find 23 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAATGGCTTATCAAAATA+AGG | 0.325439 | 3:+66668284 | None:intergenic |
| AAGCGTTCTTGACAAACTTT+TGG | 0.328234 | 3:+66670088 | None:intergenic |
| CAAAAGAAAGTGAAACAATT+AGG | 0.333708 | 3:+66670133 | None:intergenic |
| AAACACTAAATCTACTTTGA+AGG | 0.375816 | 3:-66670220 | MsG0380015196.01.T01:intron |
| TTGCTCTCTCCATGTTTAAG+TGG | 0.437896 | 3:+66670241 | None:intergenic |
| ATTTACCTTTGTGGGAAGAA+TGG | 0.439491 | 3:+66668269 | None:intergenic |
| AGGAAGAGATACGTTTGCTT+AGG | 0.448239 | 3:-66668337 | MsG0380015196.01.T01:CDS |
| ACGTTTGCTTAGGAAAGAAA+TGG | 0.460751 | 3:-66668327 | MsG0380015196.01.T01:CDS |
| CTTCACAATCTTCATCTCAA+TGG | 0.487090 | 3:-66670068 | MsG0380015196.01.T01:CDS |
| ACGTGCAATGTTCAACTATG+AGG | 0.504901 | 3:-66668598 | MsG0380015196.01.T01:intron |
| CAAAAGATGTACTCAAAGAA+AGG | 0.509955 | 3:-66668793 | MsG0380015196.01.T01:CDS |
| GACAACAAAATTATATCTCA+TGG | 0.511192 | 3:-66668497 | MsG0380015196.01.T01:CDS |
| TGACAGCTCTTTCTTGTGTG+TGG | 0.522398 | 3:+66668622 | None:intergenic |
| ACAAGAGGAGAAGTTGATGA+AGG | 0.523831 | 3:-66668461 | MsG0380015196.01.T01:intron |
| GTGTGGAGTTTGAATTCTTG+TGG | 0.533395 | 3:+66668639 | None:intergenic |
| AAGGTATTATGACAAGACTA+AGG | 0.541632 | 3:-66668774 | MsG0380015196.01.T01:intron |
| TGGAGTAGTACTGATTCTAA+AGG | 0.544697 | 3:-66670048 | MsG0380015196.01.T01:CDS |
| TAAGGCATCAATTGAGCTCG+TGG | 0.570757 | 3:+66668302 | None:intergenic |
| TAGTACTGATTCTAAAGGAA+TGG | 0.572965 | 3:-66670043 | MsG0380015196.01.T01:intron |
| ACATTAATTCCACTTAAACA+TGG | 0.573030 | 3:-66670250 | MsG0380015196.01.T01:exon |
| ATAAGCCATTCTTCCCACAA+AGG | 0.601743 | 3:-66668274 | MsG0380015196.01.T01:CDS |
| TATGGAACAGATGATTGAAG+AGG | 0.620275 | 3:-66668357 | MsG0380015196.01.T01:intron |
| GGAGTTGAGAAAGAGACAAG+AGG | 0.644836 | 3:-66668476 | MsG0380015196.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCAAAATTATTTGAAAAT+AGG | + | Chr3:66669352-66669371 | None:intergenic | 10.0% |
| !!! | ATTTTACTAATAATTCAATA+TGG | - | Chr3:66670154-66670173 | MsG0380015196.01.T01:intron | 10.0% |
| !!! | TTTTCAAATAATTTTGAAAA+AGG | - | Chr3:66669353-66669372 | MsG0380015196.01.T01:intron | 10.0% |
| !! | AATAGTAATAATAGTAAAAG+AGG | + | Chr3:66669564-66669583 | None:intergenic | 15.0% |
| !! | ATTATGTTATGTGATAATTA+TGG | + | Chr3:66669529-66669548 | None:intergenic | 15.0% |
| !! | TTATGTTATGTGATAATTAT+GGG | + | Chr3:66669528-66669547 | None:intergenic | 15.0% |
| !!! | AACTTTTGAAAAGATAAAAT+AGG | + | Chr3:66669143-66669162 | None:intergenic | 15.0% |
| !!! | AATTTTAACAAATATGTTAG+AGG | + | Chr3:66668538-66668557 | None:intergenic | 15.0% |
| !!! | ATTTTAACAAATATGTTAGA+GGG | + | Chr3:66668537-66668556 | None:intergenic | 15.0% |
| !!! | TATAAACTATTTTGAAATAG+CGG | + | Chr3:66668594-66668613 | None:intergenic | 15.0% |
| !!! | TTTTAATAAACCAATCATTA+TGG | + | Chr3:66669645-66669664 | None:intergenic | 15.0% |
| !! | ATACTTTAGATAGTTGTTAT+AGG | - | Chr3:66669391-66669410 | MsG0380015196.01.T01:intron | 20.0% |
| !! | ATCATGATTCATGTATAATA+AGG | + | Chr3:66669678-66669697 | None:intergenic | 20.0% |
| !! | ATCATTATGGATAGAATAAA+AGG | + | Chr3:66669632-66669651 | None:intergenic | 20.0% |
| !! | CAAAAATGTGAAAAATGAAA+TGG | + | Chr3:66669823-66669842 | None:intergenic | 20.0% |
| !! | CATTTCATTTACTATCATTA+AGG | + | Chr3:66668838-66668857 | None:intergenic | 20.0% |
| !! | TATGTTATGTGATAATTATG+GGG | + | Chr3:66669527-66669546 | None:intergenic | 20.0% |
| !! | TTAGACATGGTATATATTAT+TGG | - | Chr3:66669457-66669476 | MsG0380015196.01.T01:intron | 20.0% |
| !! | TTTATTCTATCCATAATGAT+TGG | - | Chr3:66669632-66669651 | MsG0380015196.01.T01:intron | 20.0% |
| !!! | CACATTTTTGTGTTTATTTA+GGG | - | Chr3:66669833-66669852 | MsG0380015196.01.T01:intron | 20.0% |
| !!! | CTCAAATATTTCTTTTAAGT+TGG | - | Chr3:66669434-66669453 | MsG0380015196.01.T01:intron | 20.0% |
| !!! | TCAAATAATTTTGAAAAAGG+TGG | - | Chr3:66669356-66669375 | MsG0380015196.01.T01:intron | 20.0% |
| !!! | TCACATTTTTGTGTTTATTT+AGG | - | Chr3:66669832-66669851 | MsG0380015196.01.T01:intron | 20.0% |
| ! | AAACACTAAATCTACTTTGA+AGG | - | Chr3:66668309-66668328 | MsG0380015196.01.T01:CDS | 25.0% |
| ! | AAGAATGGCTTATCAAAATA+AGG | + | Chr3:66670248-66670267 | None:intergenic | 25.0% |
| ! | ACATTAATTCCACTTAAACA+TGG | - | Chr3:66668279-66668298 | MsG0380015196.01.T01:CDS | 25.0% |
| ! | AGTAAATGAAATGAGATTAG+TGG | - | Chr3:66668845-66668864 | MsG0380015196.01.T01:intron | 25.0% |
| ! | ATGATTCATGTATAATAAGG+TGG | + | Chr3:66669675-66669694 | None:intergenic | 25.0% |
| ! | CAAAAGAAAGTGAAACAATT+AGG | + | Chr3:66668399-66668418 | None:intergenic | 25.0% |
| ! | GACAACAAAATTATATCTCA+TGG | - | Chr3:66670032-66670051 | MsG0380015196.01.T01:intron | 25.0% |
| ! | GGAATTTGTCTTTCTATATA+TGG | + | Chr3:66669331-66669350 | None:intergenic | 25.0% |
| ! | GTAAATGAAATGAGATTAGT+GGG | - | Chr3:66668846-66668865 | MsG0380015196.01.T01:intron | 25.0% |
| ! | TGATATATTGAACCACTATT+TGG | - | Chr3:66669284-66669303 | MsG0380015196.01.T01:intron | 25.0% |
| ! | TTCATTTATTGATGAATGTG+TGG | - | Chr3:66669997-66670016 | MsG0380015196.01.T01:intron | 25.0% |
| ! | TTGTGCTTATTTCAAAACAA+AGG | + | Chr3:66668926-66668945 | None:intergenic | 25.0% |
| !! | TATGTGTTATTAAAAGCACA+AGG | + | Chr3:66668980-66668999 | None:intergenic | 25.0% |
| !!! | AGTTGATGAAGGTATTAATT+AGG | - | Chr3:66670079-66670098 | MsG0380015196.01.T01:CDS | 25.0% |
| !!! | GGTTTTGTATTTTCTTTTGT+AGG | + | Chr3:66669872-66669891 | None:intergenic | 25.0% |
| AAAGGACTAGAAACAGATAA+AGG | + | Chr3:66669614-66669633 | None:intergenic | 30.0% | |
| ATGACAAGTAGAATATTGCA+TGG | + | Chr3:66669192-66669211 | None:intergenic | 30.0% | |
| ATTATGACAAGACTAAGGTA+AGG | - | Chr3:66669760-66669779 | MsG0380015196.01.T01:intron | 30.0% | |
| CAAAAGATGTACTCAAAGAA+AGG | - | Chr3:66669736-66669755 | MsG0380015196.01.T01:intron | 30.0% | |
| CATAGTACTAATTAACCAAG+AGG | + | Chr3:66668375-66668394 | None:intergenic | 30.0% | |
| GCACTTGATCTAAATAATTG+TGG | + | Chr3:66669484-66669503 | None:intergenic | 30.0% | |
| TTTGAGTGCAAAATTAAGTG+TGG | + | Chr3:66669420-66669439 | None:intergenic | 30.0% | |
| ! | AAGGTATTATGACAAGACTA+AGG | - | Chr3:66669755-66669774 | MsG0380015196.01.T01:intron | 30.0% |
| ! | ACTAAATCTACTTTGAAGGT+TGG | - | Chr3:66668313-66668332 | MsG0380015196.01.T01:CDS | 30.0% |
| ! | ATGAATGTGTGGTTTTTCTT+AGG | - | Chr3:66670008-66670027 | MsG0380015196.01.T01:intron | 30.0% |
| ! | ATTGCATGGATAAACTTGTT+AGG | + | Chr3:66669178-66669197 | None:intergenic | 30.0% |
| ! | GCATTTTCCTTAATTTTCCA+TGG | - | Chr3:66668418-66668437 | MsG0380015196.01.T01:intron | 30.0% |
| !! | TAGTACTGATTCTAAAGGAA+TGG | - | Chr3:66668486-66668505 | MsG0380015196.01.T01:CDS | 30.0% |
| !!! | TAGTTTTTTCTACTTCCTCT+TGG | - | Chr3:66668357-66668376 | MsG0380015196.01.T01:intron | 30.0% |
| !!! | TCTTTTAAGTTGGTTAGACA+TGG | - | Chr3:66669444-66669463 | MsG0380015196.01.T01:intron | 30.0% |
| AACACGTACTTACCAAATAG+TGG | + | Chr3:66669299-66669318 | None:intergenic | 35.0% | |
| AACTTGCATCACAATGTTGT+TGG | - | Chr3:66668736-66668755 | MsG0380015196.01.T01:intron | 35.0% | |
| AATGAAATGAGATTAGTGGG+AGG | - | Chr3:66668849-66668868 | MsG0380015196.01.T01:intron | 35.0% | |
| ACAGCATGTATGAAGGATTT+GGG | - | Chr3:66668706-66668725 | MsG0380015196.01.T01:intron | 35.0% | |
| ACGTTTGCTTAGGAAAGAAA+TGG | - | Chr3:66670202-66670221 | MsG0380015196.01.T01:intron | 35.0% | |
| CTTCACAATCTTCATCTCAA+TGG | - | Chr3:66668461-66668480 | MsG0380015196.01.T01:intron | 35.0% | |
| GACTAAGGTAAGGAATTACA+TGG | - | Chr3:66669770-66669789 | MsG0380015196.01.T01:intron | 35.0% | |
| GCTATAACGCTATAGCATAA+CGG | + | Chr3:66668658-66668677 | None:intergenic | 35.0% | |
| TATGGAACAGATGATTGAAG+AGG | - | Chr3:66670172-66670191 | MsG0380015196.01.T01:intron | 35.0% | |
| TTATACTAAACAACGTGTCG+TGG | - | Chr3:66668609-66668628 | MsG0380015196.01.T01:CDS | 35.0% | |
| ! | AAGCGTTCTTGACAAACTTT+TGG | + | Chr3:66668444-66668463 | None:intergenic | 35.0% |
| ! | CAATAAGCGTCGTTAAATAG+CGG | + | Chr3:66668682-66668701 | None:intergenic | 35.0% |
| ! | CTTTTGGCCATGGAAAATTA+AGG | + | Chr3:66668428-66668447 | None:intergenic | 35.0% |
| ! | GTGTTATTAAAAGCACAAGG+TGG | + | Chr3:66668977-66668996 | None:intergenic | 35.0% |
| !! | GAGGGTACTGTAAAAAAACT+AGG | + | Chr3:66668519-66668538 | None:intergenic | 35.0% |
| !! | TGGAGTAGTACTGATTCTAA+AGG | - | Chr3:66668481-66668500 | MsG0380015196.01.T01:CDS | 35.0% |
| ACGTGCAATGTTCAACTATG+AGG | - | Chr3:66669931-66669950 | MsG0380015196.01.T01:intron | 40.0% | |
| AGGAAGAGATACGTTTGCTT+AGG | - | Chr3:66670192-66670211 | MsG0380015196.01.T01:intron | 40.0% | |
| ATAAGCCATTCTTCCCACAA+AGG | - | Chr3:66670255-66670274 | MsG0380015196.01.T01:five_prime_UTR | 40.0% | |
| CAAATCCTTCATACATGCTG+TGG | + | Chr3:66668707-66668726 | None:intergenic | 40.0% | |
| CACAGCATGTATGAAGGATT+TGG | - | Chr3:66668705-66668724 | MsG0380015196.01.T01:intron | 40.0% | |
| GTGCATTACCAACAACACTA+TGG | - | Chr3:66669500-66669519 | MsG0380015196.01.T01:intron | 40.0% | |
| GTGTGGAGTTTGAATTCTTG+TGG | + | Chr3:66669893-66669912 | None:intergenic | 40.0% | |
| TTGCTCTCTCCATGTTTAAG+TGG | + | Chr3:66668291-66668310 | None:intergenic | 40.0% | |
| ! | TCTTGACAAACTTTTGGCCA+TGG | + | Chr3:66668438-66668457 | None:intergenic | 40.0% |
| !! | ACAAGAGGAGAAGTTGATGA+AGG | - | Chr3:66670068-66670087 | MsG0380015196.01.T01:CDS | 40.0% |
| !! | GCATGGATAAACTTGTTAGG+TGG | + | Chr3:66669175-66669194 | None:intergenic | 40.0% |
| GGAGTTGAGAAAGAGACAAG+AGG | - | Chr3:66670053-66670072 | MsG0380015196.01.T01:CDS | 45.0% | |
| TATGGGGTCCATAGTGTTGT+TGG | + | Chr3:66669511-66669530 | None:intergenic | 45.0% | |
| TGACAGCTCTTTCTTGTGTG+TGG | + | Chr3:66669910-66669929 | None:intergenic | 45.0% | |
| TTGCTCCACAGCATGTATGA+AGG | - | Chr3:66668699-66668718 | MsG0380015196.01.T01:intron | 45.0% | |
| ! | TAAGGCATCAATTGAGCTCG+TGG | + | Chr3:66670230-66670249 | None:intergenic | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 66668271 | 66670280 | 66668271 | ID=MsG0380015196.01;Name=MsG0380015196.01 |
| Chr3 | mRNA | 66668271 | 66670280 | 66668271 | ID=MsG0380015196.01.T01;Parent=MsG0380015196.01;Name=MsG0380015196.01.T01;_AED=0.44;_eAED=0.51;_QI=27|0.8|0.66|1|0.6|0.66|6|0|150 |
| Chr3 | exon | 66668271 | 66668369 | 66668271 | ID=MsG0380015196.01.T01:exon:23071;Parent=MsG0380015196.01.T01 |
| Chr3 | exon | 66668462 | 66668521 | 66668462 | ID=MsG0380015196.01.T01:exon:23070;Parent=MsG0380015196.01.T01 |
| Chr3 | exon | 66668599 | 66668697 | 66668599 | ID=MsG0380015196.01.T01:exon:23069;Parent=MsG0380015196.01.T01 |
| Chr3 | exon | 66668775 | 66668816 | 66668775 | ID=MsG0380015196.01.T01:exon:23068;Parent=MsG0380015196.01.T01 |
| Chr3 | exon | 66670044 | 66670163 | 66670044 | ID=MsG0380015196.01.T01:exon:23067;Parent=MsG0380015196.01.T01 |
| Chr3 | exon | 66670221 | 66670280 | 66670221 | ID=MsG0380015196.01.T01:exon:23066;Parent=MsG0380015196.01.T01 |
| Chr3 | five_prime_UTR | 66670254 | 66670280 | 66670254 | ID=MsG0380015196.01.T01:five_prime_utr;Parent=MsG0380015196.01.T01 |
| Chr3 | CDS | 66670221 | 66670253 | 66670221 | ID=MsG0380015196.01.T01:cds;Parent=MsG0380015196.01.T01 |
| Chr3 | CDS | 66670044 | 66670163 | 66670044 | ID=MsG0380015196.01.T01:cds;Parent=MsG0380015196.01.T01 |
| Chr3 | CDS | 66668775 | 66668816 | 66668775 | ID=MsG0380015196.01.T01:cds;Parent=MsG0380015196.01.T01 |
| Chr3 | CDS | 66668599 | 66668697 | 66668599 | ID=MsG0380015196.01.T01:cds;Parent=MsG0380015196.01.T01 |
| Chr3 | CDS | 66668462 | 66668521 | 66668462 | ID=MsG0380015196.01.T01:cds;Parent=MsG0380015196.01.T01 |
| Chr3 | CDS | 66668271 | 66668369 | 66668271 | ID=MsG0380015196.01.T01:cds;Parent=MsG0380015196.01.T01 |
| Gene Sequence |
| Protein sequence |
