AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045607.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045607.01.T01 MTR_8g075150 99.174 121 1 0 1 121 28 148 5.76e-80 247
MsG0880045607.01.T01 MTR_8g075150 79.412 136 6 1 132 245 280 415 8.25e-72 226
MsG0880045607.01.T01 MTR_5g022670 92.500 120 6 1 1 120 27 143 2.51e-71 224
MsG0880045607.01.T01 MTR_5g022670 65.323 124 21 1 134 235 275 398 2.04e-51 173
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045607.01.T01 AT4G35920 83.471 121 17 1 1 121 28 145 1.67e-66 212
MsG0880045607.01.T01 AT4G35920 60.748 107 20 1 152 236 298 404 2.86e-40 144
MsG0880045607.01.T01 AT4G35920 83.471 121 17 1 1 121 28 145 1.67e-66 212
MsG0880045607.01.T01 AT4G35920 60.748 107 20 1 152 236 298 404 2.86e-40 144
MsG0880045607.01.T01 AT4G35920 83.471 121 17 1 1 121 28 145 1.67e-66 212
MsG0880045607.01.T01 AT4G35920 60.748 107 20 1 152 236 298 404 2.86e-40 144
MsG0880045607.01.T01 AT4G35920 83.471 121 17 1 1 121 28 145 1.67e-66 212
MsG0880045607.01.T01 AT4G35920 60.748 107 20 1 152 236 298 404 2.86e-40 144
MsG0880045607.01.T01 AT4G35920 83.471 121 17 1 1 121 28 145 1.67e-66 212
MsG0880045607.01.T01 AT4G35920 60.748 107 20 1 152 236 298 404 2.86e-40 144
MsG0880045607.01.T01 AT2G17780 72.727 121 30 1 1 121 28 145 2.08e-55 181
MsG0880045607.01.T01 AT2G17780 72.727 121 30 1 1 121 28 145 1.68e-54 180
MsG0880045607.01.T01 AT2G17780 61.905 63 24 0 143 205 281 343 2.34e-21 92.4
MsG0880045607.01.T01 AT2G17780 72.727 121 30 1 1 121 28 145 3.33e-54 180
MsG0880045607.01.T01 AT2G17780 54.464 112 29 1 143 232 281 392 2.53e-34 128
MsG0880045607.01.T01 AT2G17780 72.727 121 30 1 1 121 28 145 3.33e-54 180
MsG0880045607.01.T01 AT2G17780 54.464 112 29 1 143 232 281 392 2.53e-34 128
MsG0880045607.01.T01 AT2G17780 72.727 121 30 1 1 121 28 145 3.94e-54 180
MsG0880045607.01.T01 AT2G17780 50.794 126 40 1 143 246 281 406 5.83e-35 129
MsG0880045607.01.T01 AT2G17780 72.727 121 30 1 1 121 28 145 3.94e-54 180
MsG0880045607.01.T01 AT2G17780 50.794 126 40 1 143 246 281 406 5.83e-35 129
MsG0880045607.01.T01 AT2G17780 72.727 121 30 1 1 121 28 145 3.94e-54 180
MsG0880045607.01.T01 AT2G17780 50.794 126 40 1 143 246 281 406 5.83e-35 129
MsG0880045607.01.T01 AT2G17780 72.727 121 30 1 1 121 28 145 3.94e-54 180
MsG0880045607.01.T01 AT2G17780 50.794 126 40 1 143 246 281 406 5.83e-35 129
MsG0880045607.01.T01 AT2G17780 72.727 121 30 1 1 121 28 145 3.94e-54 180
MsG0880045607.01.T01 AT2G17780 50.794 126 40 1 143 246 281 406 5.83e-35 129
MsG0880045607.01.T01 AT2G17780 72.727 121 30 1 1 121 28 145 4.46e-54 180
MsG0880045607.01.T01 AT2G17780 53.279 122 34 2 143 241 281 402 1.43e-35 131

Find 75 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGCATCTAACTGTTAAT+TGG 0.109963 8:+61700941 None:intergenic
TCTAGAGGCTCTCGGGTTTC+AGG 0.140533 8:+61700783 None:intergenic
TGAAAATTGGCTATTGATAT+TGG 0.151522 8:-61697652 MsG0880045607.01.T01:three_prime_UTR
GTGCAAATCCGCGGGGTTTA+TGG 0.217903 8:-61698028 MsG0880045607.01.T01:intron
TTTGAGAAGGTCATATATTT+TGG 0.228435 8:-61700745 MsG0880045607.01.T01:CDS
GGAACATTGTTTATCAATTT+AGG 0.249469 8:-61700674 MsG0880045607.01.T01:CDS
GCATCTTCATGGGAACAATT+TGG 0.278027 8:-61700982 MsG0880045607.01.T01:five_prime_UTR
CCATATCAAATATTGAAAAT+TGG 0.288981 8:-61697665 MsG0880045607.01.T01:three_prime_UTR
ACAATAAAATCATAGGATAA+TGG 0.309686 8:+61697556 None:intergenic
GAAAATTGGCTATTGATATT+GGG 0.310235 8:-61697651 MsG0880045607.01.T01:three_prime_UTR
GCACAACATCTTAAGTTGAT+TGG 0.319124 8:-61700849 MsG0880045607.01.T01:CDS
CAATAAAATCATAGGATAAT+GGG 0.329951 8:+61697557 None:intergenic
GATTTGATTCTCACACTGTT+TGG 0.366187 8:-61697629 MsG0880045607.01.T01:three_prime_UTR
CACAACATCTTAAGTTGATT+GGG 0.378407 8:-61700848 MsG0880045607.01.T01:CDS
CTAGTTGTTCTAGAGGCTCT+CGG 0.379192 8:+61700775 None:intergenic
CTACCTTTATTTGCTTGCCA+TGG 0.394112 8:-61700700 MsG0880045607.01.T01:CDS
AGGCTAGTGTTGATCTTCTC+AGG 0.398167 8:+61697754 None:intergenic
ACTGCATCTAACTGTTAATT+GGG 0.402902 8:+61700942 None:intergenic
ATCCCATGGCAAGCAAATAA+AGG 0.407737 8:+61700697 None:intergenic
ATGCTCGTGCTACTCGAGTC+AGG 0.411445 8:-61700590 MsG0880045607.01.T01:CDS
TTAGATGCAGTAAAGTTGAT+TGG 0.412057 8:-61700930 MsG0880045607.01.T01:five_prime_UTR
ATCAAAATTCATATTAATGA+AGG 0.419416 8:+61701913 None:intergenic
GATATAGCATGGCATCTTCA+TGG 0.424441 8:-61700993 MsG0880045607.01.T01:five_prime_UTR
TTGAAAACTCAAGATCTTGA+AGG 0.429876 8:-61701733 MsG0880045607.01.T01:five_prime_UTR
TACCTTTATTTGCTTGCCAT+GGG 0.431724 8:-61700699 MsG0880045607.01.T01:CDS
CTAGAGGCTCTCGGGTTTCA+GGG 0.434211 8:+61700784 None:intergenic
TTGTATACATTTGGAGAACT+AGG 0.441110 8:-61697537 MsG0880045607.01.T01:three_prime_UTR
GTTCATATCAGCGGGAAGAT+TGG 0.443662 8:-61698948 MsG0880045607.01.T01:CDS
AATGTATACAATAAAATCAT+AGG 0.450934 8:+61697549 None:intergenic
GCCTCCAACTGCACAGTACA+TGG 0.465280 8:-61697735 MsG0880045607.01.T01:CDS
TAGATGCAGTAAAGTTGATT+GGG 0.468118 8:-61700929 MsG0880045607.01.T01:five_prime_UTR
CTTGCGCTCTTGTACAAGAA+TGG 0.469657 8:-61698057 MsG0880045607.01.T01:CDS
AACTAAAAGTTCATATCAGC+GGG 0.478387 8:-61698956 MsG0880045607.01.T01:CDS
AAGGACGATAAGTGTGTTGT+CGG 0.485822 8:+61701972 None:intergenic
AATCTTTGAAAATGTTCCAC+AGG 0.488214 8:+61698758 None:intergenic
TGACTTTATTGCATATTCGT+TGG 0.495627 8:-61698349 MsG0880045607.01.T01:intron
TAGTTGTTCTAGAGGCTCTC+GGG 0.496041 8:+61700776 None:intergenic
TTAAAAGCTACATTACATAT+AGG 0.497300 8:+61697597 None:intergenic
TTTATTTGCTTGCCATGGGA+TGG 0.498857 8:-61700695 MsG0880045607.01.T01:CDS
CAAAGTTTCAGAAAAGAATC+CGG 0.507843 8:-61698983 MsG0880045607.01.T01:CDS
ATTGGATGACGAGGACCAAA+AGG 0.511764 8:-61699899 MsG0880045607.01.T01:intron
GATTCCATGTACTGTGCAGT+TGG 0.522079 8:+61697731 None:intergenic
GGAGGGAAGTGCAAATCCGC+GGG 0.525378 8:-61698036 MsG0880045607.01.T01:CDS
ATATAGCATGGCATCTTCAT+GGG 0.527850 8:-61700992 MsG0880045607.01.T01:five_prime_UTR
TAACTTACATATTGGTCTGT+TGG 0.528804 8:+61698722 None:intergenic
TGAAAACTCAAGATCTTGAA+GGG 0.530000 8:-61701732 MsG0880045607.01.T01:five_prime_UTR
ATTTGGAGAGATTGCAAATG+TGG 0.539302 8:-61700965 MsG0880045607.01.T01:five_prime_UTR
TGAGAAGATCTACACCATGC+AGG 0.551996 8:-61701690 MsG0880045607.01.T01:five_prime_UTR
CGCTCTTGTACAAGAATGGA+GGG 0.554728 8:-61698053 MsG0880045607.01.T01:CDS
TCCATGTACTGTGCAGTTGG+AGG 0.556476 8:+61697734 None:intergenic
GCATCTTCTAGTTGTTCTAG+AGG 0.556880 8:+61700768 None:intergenic
GAGAAGATCTACACCATGCA+GGG 0.560201 8:-61701689 MsG0880045607.01.T01:five_prime_UTR
AATGCTATTTGTACAACCAT+AGG 0.565364 8:-61701641 MsG0880045607.01.T01:intron
ATAAACAATGTTCCATCCCA+TGG 0.566413 8:+61700683 None:intergenic
CATTGTTTATCAATTTAGGA+AGG 0.567874 8:-61700670 MsG0880045607.01.T01:CDS
AGAGACTTGAAGTTATTGAA+AGG 0.570053 8:-61699938 MsG0880045607.01.T01:CDS
TATGGTTGTACAAATAGCAT+TGG 0.575019 8:+61701643 None:intergenic
CTTTAAAATCATCCCCTGCA+TGG 0.580656 8:+61701676 None:intergenic
GGATCAATGTGCGTACACAT+TGG 0.581545 8:-61699917 MsG0880045607.01.T01:CDS
TCGGTTAAGAAATTTATGCA+TGG 0.589947 8:+61701991 None:intergenic
TGCTCGTGCTACTCGAGTCA+GGG 0.597912 8:-61700589 MsG0880045607.01.T01:intron
GCGCTCTTGTACAAGAATGG+AGG 0.609334 8:-61698054 MsG0880045607.01.T01:CDS
CAACTAAAAGTTCATATCAG+CGG 0.613618 8:-61698957 MsG0880045607.01.T01:CDS
AACTAGAAGATGCTTTGAGA+AGG 0.615176 8:-61700758 MsG0880045607.01.T01:CDS
TGGAGGGAAGTGCAAATCCG+CGG 0.619338 8:-61698037 MsG0880045607.01.T01:CDS
ATCTTTGAAAATGTTCCACA+GGG 0.634487 8:+61698759 None:intergenic
ACACTGCACTGCAACAACAA+TGG 0.653498 8:+61701764 None:intergenic
TGAAAGCTGCAAATACAGCA+AGG 0.659950 8:-61700899 MsG0880045607.01.T01:CDS
TGCGTACACATTGGATGACG+AGG 0.663358 8:-61699908 MsG0880045607.01.T01:CDS
AAGACATTCTTCTATCCCTG+TGG 0.670537 8:-61698774 MsG0880045607.01.T01:CDS
CTGTGTGAGCTGATATAGCA+TGG 0.679336 8:-61701004 MsG0880045607.01.T01:five_prime_UTR
TTGTCGACTAGAGTAATGAG+AGG 0.690301 8:+61700612 None:intergenic
AGAAGATCTACACCATGCAG+GGG 0.700251 8:-61701688 MsG0880045607.01.T01:five_prime_UTR
GAGGGAAGTGCAAATCCGCG+GGG 0.769768 8:-61698035 MsG0880045607.01.T01:CDS
AAGTCATACCATAAACCCCG+CGG 0.775462 8:+61698020 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACAAATAATAAAAATTC+AGG - Chr8:61701025-61701044 MsG0880045607.01.T01:intron 10.0%
!!! AAAGAAAAAAACAATTTTTT+AGG + Chr8:61698206-61698225 None:intergenic 10.0%
!! AAATATTATCTAGAAATGAA+GGG + Chr8:61698018-61698037 None:intergenic 15.0%
!! AATGTATACAATAAAATCAT+AGG + Chr8:61702020-61702039 None:intergenic 15.0%
!! AGACATGTATAAAATAAATT+AGG + Chr8:61701639-61701658 None:intergenic 15.0%
!! ATCAAAATTCATATTAATGA+AGG + Chr8:61697656-61697675 None:intergenic 15.0%
!! CTGATTTAATTAGAAAAATT+AGG + Chr8:61698514-61698533 None:intergenic 15.0%
!! TCATAATATAATGAACATTA+CGG + Chr8:61701374-61701393 None:intergenic 15.0%
!! TTCATTATATTATGATATAG+TGG - Chr8:61701379-61701398 MsG0880045607.01.T01:intron 15.0%
!! TTTAATCAAATTCATATTCA+TGG - Chr8:61698054-61698073 MsG0880045607.01.T01:CDS 15.0%
!!! AATTTATTTTATACATGTCT+TGG - Chr8:61701639-61701658 MsG0880045607.01.T01:intron 15.0%
!!! ATGATTTTATTGTATACATT+TGG - Chr8:61702020-61702039 MsG0880045607.01.T01:five_prime_UTR 15.0%
!!! CTAATTTTTCTAATTAAATC+AGG - Chr8:61698512-61698531 MsG0880045607.01.T01:intron 15.0%
!!! TAAAAGAATATTTTCTTTCA+TGG - Chr8:61700729-61700748 MsG0880045607.01.T01:CDS 15.0%
!! AAAGATTGTAACTTACATAT+TGG + Chr8:61700855-61700874 None:intergenic 20.0%
!! AACAAACATTATACAAAGAA+AGG + Chr8:61701316-61701335 None:intergenic 20.0%
!! AATGATCATTTATTTACCTA+TGG + Chr8:61697944-61697963 None:intergenic 20.0%
!! ACAATAAAATCATAGGATAA+TGG + Chr8:61702013-61702032 None:intergenic 20.0%
!! CAAATATTATCTAGAAATGA+AGG + Chr8:61698019-61698038 None:intergenic 20.0%
!! CAATAAAATCATAGGATAAT+GGG + Chr8:61702012-61702031 None:intergenic 20.0%
!! CATAAGTAAAAGAAAAAGAA+AGG + Chr8:61697616-61697635 None:intergenic 20.0%
!! CCATATCAAATATTGAAAAT+TGG - Chr8:61701901-61701920 MsG0880045607.01.T01:five_prime_UTR 20.0%
!! GAAAAATACATACAAAGATA+AGG + Chr8:61700674-61700693 None:intergenic 20.0%
!! TATAACTTCACAAATCAAAA+TGG - Chr8:61697978-61697997 MsG0880045607.01.T01:intron 20.0%
!! TCAATGAATAGTTTCTTAAT+TGG + Chr8:61700344-61700363 None:intergenic 20.0%
!! TGAATTTGATTAAATTTGTC+TGG + Chr8:61698048-61698067 None:intergenic 20.0%
!! TTAAAAGCTACATTACATAT+AGG + Chr8:61701972-61701991 None:intergenic 20.0%
!!! AAAGTTTTTAGCTTTTTTGA+CGG - Chr8:61698398-61698417 MsG0880045607.01.T01:intron 20.0%
!!! ATTAGTATATTTTCATTTGC+AGG - Chr8:61700765-61700784 MsG0880045607.01.T01:CDS 20.0%
!!! ATTTGAAATTCTAACTAATC+CGG + Chr8:61699523-61699542 None:intergenic 20.0%
!!! ATTTTCTTTTTTAAGTGCTT+CGG + Chr8:61699786-61699805 None:intergenic 20.0%
!!! CCAATTTTCAATATTTGATA+TGG + Chr8:61701904-61701923 None:intergenic 20.0%
!!! CTTTAGATAGTAAGTTTTTA+TGG + Chr8:61700412-61700431 None:intergenic 20.0%
!!! GAAAGAATATCACTTTTTAT+GGG + Chr8:61700021-61700040 None:intergenic 20.0%
!!! GATTTAAGTTACAAATATTC+AGG - Chr8:61701083-61701102 MsG0880045607.01.T01:intron 20.0%
!!! GGATTGAAAATATATTTTGA+AGG - Chr8:61698533-61698552 MsG0880045607.01.T01:intron 20.0%
!!! TGAAAATATATTTTGAAGGT+TGG - Chr8:61698537-61698556 MsG0880045607.01.T01:intron 20.0%
!!! TGAAAGAATATCACTTTTTA+TGG + Chr8:61700022-61700041 None:intergenic 20.0%
!!! TGTAGCTTTTAATATATAGT+TGG - Chr8:61701980-61701999 MsG0880045607.01.T01:five_prime_UTR 20.0%
! AAGTTTACAACAATAGTGTT+TGG + Chr8:61700287-61700306 None:intergenic 25.0%
! AATTTCAACAACTATAACAG+AGG + Chr8:61701051-61701070 None:intergenic 25.0%
! ATATAGTGAACACTAAAATG+AGG - Chr8:61700883-61700902 MsG0880045607.01.T01:CDS 25.0%
! ATTTCCAAAATATTTGCACT+GGG + Chr8:61698463-61698482 None:intergenic 25.0%
! CATTGTTTATCAATTTAGGA+AGG - Chr8:61698896-61698915 MsG0880045607.01.T01:intron 25.0%
! CTAGATCAAAATCAAGAATT+TGG + Chr8:61701683-61701702 None:intergenic 25.0%
! GAAAATTGGCTATTGATATT+GGG - Chr8:61701915-61701934 MsG0880045607.01.T01:five_prime_UTR 25.0%
! GGAACATTGTTTATCAATTT+AGG - Chr8:61698892-61698911 MsG0880045607.01.T01:intron 25.0%
! TAAATATCAATTTAAGCCCA+TGG + Chr8:61700945-61700964 None:intergenic 25.0%
! TATAGTGAACACTAAAATGA+GGG - Chr8:61700884-61700903 MsG0880045607.01.T01:CDS 25.0%
! TATTTCCAAAATATTTGCAC+TGG + Chr8:61698464-61698483 None:intergenic 25.0%
! TGAAAATTGGCTATTGATAT+TGG - Chr8:61701914-61701933 MsG0880045607.01.T01:five_prime_UTR 25.0%
! TGCATAACTACTATATCATT+TGG + Chr8:61700112-61700131 None:intergenic 25.0%
!! CTTTTACTATTTTACCCTTT+TGG - Chr8:61700509-61700528 MsG0880045607.01.T01:intron 25.0%
!! TTTGAGAAGGTCATATATTT+TGG - Chr8:61698821-61698840 MsG0880045607.01.T01:intron 25.0%
!!! AAGCAACAAACATTTTAAAG+TGG + Chr8:61699253-61699272 None:intergenic 25.0%
!!! CACAACCTCAATATTTTTAA+GGG + Chr8:61701143-61701162 None:intergenic 25.0%
!!! CACTTTTAAGATTCACTAAT+TGG - Chr8:61697735-61697754 MsG0880045607.01.T01:CDS 25.0%
AAACGTCAAGAAACTAGTAT+TGG + Chr8:61699197-61699216 None:intergenic 30.0%
AACACATAAAAGTTGTAGAG+AGG + Chr8:61700062-61700081 None:intergenic 30.0%
AACTAAAAGTTCATATCAGC+GGG - Chr8:61700610-61700629 MsG0880045607.01.T01:CDS 30.0%
AATAGTGTTTGGATGACTTT+AGG + Chr8:61700276-61700295 None:intergenic 30.0%
AATGAAAGTCAGTAACCAAA+AGG + Chr8:61700527-61700546 None:intergenic 30.0%
ACACATAAAAGTTGTAGAGA+GGG + Chr8:61700061-61700080 None:intergenic 30.0%
ACATACATCAATTGAAACCA+GGG + Chr8:61699060-61699079 None:intergenic 30.0%
ACATCATTCACAAGCAAATA+TGG - Chr8:61699826-61699845 MsG0880045607.01.T01:intron 30.0%
ACTCATTAACATTCTATGTC+AGG - Chr8:61701444-61701463 MsG0880045607.01.T01:intron 30.0%
ACTGCATCTAACTGTTAATT+GGG + Chr8:61698627-61698646 None:intergenic 30.0%
ACTGCATGACGAATAATAAA+AGG + Chr8:61700473-61700492 None:intergenic 30.0%
AGAGACTTGAAGTTATTGAA+AGG - Chr8:61699628-61699647 MsG0880045607.01.T01:intron 30.0%
ATAGCATAATATTTGTGCCA+TGG - Chr8:61700925-61700944 MsG0880045607.01.T01:exon 30.0%
ATAGTGAACACTAAAATGAG+GGG - Chr8:61700885-61700904 MsG0880045607.01.T01:CDS 30.0%
ATGAAAGTCAGTAACCAAAA+GGG + Chr8:61700526-61700545 None:intergenic 30.0%
CAAAGTTTCAGAAAAGAATC+CGG - Chr8:61700583-61700602 MsG0880045607.01.T01:intron 30.0%
CAACTAAAAGTTCATATCAG+CGG - Chr8:61700609-61700628 MsG0880045607.01.T01:CDS 30.0%
CAAGAAATGTTGATCAACAA+TGG - Chr8:61698348-61698367 MsG0880045607.01.T01:intron 30.0%
CCAGATAGAAAGAATAATAG+AGG + Chr8:61701109-61701128 None:intergenic 30.0%
CCTCTATTATTCTTTCTATC+TGG - Chr8:61701106-61701125 MsG0880045607.01.T01:intron 30.0%
CTCATTAACATTCTATGTCA+GGG - Chr8:61701445-61701464 MsG0880045607.01.T01:intron 30.0%
CTGCATGACGAATAATAAAA+GGG + Chr8:61700472-61700491 None:intergenic 30.0%
GCTCGATACAATTTACAATT+TGG + Chr8:61699137-61699156 None:intergenic 30.0%
GTGATATTCTTTCATCATCA+AGG - Chr8:61700028-61700047 MsG0880045607.01.T01:intron 30.0%
TACTGCATCTAACTGTTAAT+TGG + Chr8:61698628-61698647 None:intergenic 30.0%
TAGCATAATATTTGTGCCAT+GGG - Chr8:61700926-61700945 MsG0880045607.01.T01:exon 30.0%
TATGGTTGTACAAATAGCAT+TGG + Chr8:61697926-61697945 None:intergenic 30.0%
TCGGTTAAGAAATTTATGCA+TGG + Chr8:61697578-61697597 None:intergenic 30.0%
TGAAAACTCAAGATCTTGAA+GGG - Chr8:61697834-61697853 MsG0880045607.01.T01:intron 30.0%
TGACTTTATTGCATATTCGT+TGG - Chr8:61701217-61701236 MsG0880045607.01.T01:intron 30.0%
TGTTACTGTATTCTACAATC+TGG + Chr8:61699946-61699965 None:intergenic 30.0%
TTGAAAACTCAAGATCTTGA+AGG - Chr8:61697833-61697852 MsG0880045607.01.T01:intron 30.0%
TTGTATACATTTGGAGAACT+AGG - Chr8:61702029-61702048 MsG0880045607.01.T01:five_prime_UTR 30.0%
! AATCTTTGAAAATGTTCCAC+AGG + Chr8:61700811-61700830 None:intergenic 30.0%
! AATGCTATTTGTACAACCAT+AGG - Chr8:61697925-61697944 MsG0880045607.01.T01:intron 30.0%
! ACAACAAACAAAAAAGTGCA+AGG + Chr8:61700144-61700163 None:intergenic 30.0%
! ATCTTTGAAAATGTTCCACA+GGG + Chr8:61700810-61700829 None:intergenic 30.0%
! GTATCGACAAAATAGTGTTT+GGG + Chr8:61700241-61700260 None:intergenic 30.0%
! TAACTTACATATTGGTCTGT+TGG + Chr8:61700847-61700866 None:intergenic 30.0%
! TAGATGCAGTAAAGTTGATT+GGG - Chr8:61698637-61698656 MsG0880045607.01.T01:intron 30.0%
! TTAGATGCAGTAAAGTTGAT+TGG - Chr8:61698636-61698655 MsG0880045607.01.T01:intron 30.0%
!! AACCTCAATATTTTTAAGGG+TGG + Chr8:61701140-61701159 None:intergenic 30.0%
!! AGTATCGACAAAATAGTGTT+TGG + Chr8:61700242-61700261 None:intergenic 30.0%
!! ATAATAATAGCTTGCTTCTC+TGG - Chr8:61699595-61699614 MsG0880045607.01.T01:intron 30.0%
!! CACAACATCTTAAGTTGATT+GGG - Chr8:61698718-61698737 MsG0880045607.01.T01:intron 30.0%
!! GCACAACCTCAATATTTTTA+AGG + Chr8:61701144-61701163 None:intergenic 30.0%
!! TATGAACTTTTAGTTGACAC+CGG + Chr8:61700605-61700624 None:intergenic 30.0%
!!! ACAGATTGTTTTGATCGATT+AGG - Chr8:61701869-61701888 MsG0880045607.01.T01:five_prime_UTR 30.0%
!!! CAGATTGTTTTGATCGATTA+GGG - Chr8:61701870-61701889 MsG0880045607.01.T01:five_prime_UTR 30.0%
!!! GTTGCAGAACTTTTATTTTC+CGG - Chr8:61699501-61699520 MsG0880045607.01.T01:intron 30.0%
!!! TATGTGTTTTGAGATCACTT+AGG - Chr8:61700074-61700093 MsG0880045607.01.T01:intron 30.0%
!!! TATTTTGGTCAATAGTTGTC+AGG - Chr8:61698836-61698855 MsG0880045607.01.T01:intron 30.0%
AAATCAAGAATTTGGCCAAG+AGG + Chr8:61701675-61701694 None:intergenic 35.0%
ACAAAGAAAGGCAACATTAC+CGG + Chr8:61701304-61701323 None:intergenic 35.0%
ACAATCTGGTAGTTATCTTC+AGG + Chr8:61699932-61699951 None:intergenic 35.0%
ACATGTCATACAAGTGTCAT+AGG + Chr8:61698161-61698180 None:intergenic 35.0%
ATAAACAATGTTCCATCCCA+TGG + Chr8:61698886-61698905 None:intergenic 35.0%
ATATAGCATGGCATCTTCAT+GGG - Chr8:61698574-61698593 MsG0880045607.01.T01:intron 35.0%
ATTAACATTCTATGTCAGGG+AGG - Chr8:61701448-61701467 MsG0880045607.01.T01:intron 35.0%
ATTTGATTGAGTGTCTGACA+CGG + Chr8:61698280-61698299 None:intergenic 35.0%
ATTTGGAGAGATTGCAAATG+TGG - Chr8:61698601-61698620 MsG0880045607.01.T01:intron 35.0%
CACACATATTCACCAAAACA+AGG + Chr8:61699369-61699388 None:intergenic 35.0%
CATACATCAATTGAAACCAG+GGG + Chr8:61699059-61699078 None:intergenic 35.0%
GAAATGTTGATCAACAATGG+TGG - Chr8:61698351-61698370 MsG0880045607.01.T01:CDS 35.0%
GACATACATCAATTGAAACC+AGG + Chr8:61699061-61699080 None:intergenic 35.0%
GATTTGATTCTCACACTGTT+TGG - Chr8:61701937-61701956 MsG0880045607.01.T01:five_prime_UTR 35.0%
TAGGAAGATGATGAACATTC+CGG - Chr8:61701282-61701301 MsG0880045607.01.T01:intron 35.0%
TATGAGTGCTATACAGTTGT+CGG + Chr8:61698253-61698272 None:intergenic 35.0%
TGCCACCCTTAAAAATATTG+AGG - Chr8:61701135-61701154 MsG0880045607.01.T01:intron 35.0%
TGCTATTGATCATTCATGCT+AGG - Chr8:61699220-61699239 MsG0880045607.01.T01:intron 35.0%
TGTGTATTGTCTATGAAGCA+CGG - Chr8:61698078-61698097 MsG0880045607.01.T01:CDS 35.0%
TTTGACGGTAGATGGATAAA+TGG - Chr8:61698413-61698432 MsG0880045607.01.T01:intron 35.0%
! GCGCATCTTTTCAACATTTT+AGG - Chr8:61701573-61701592 MsG0880045607.01.T01:intron 35.0%
! TACCTTTATTTGCTTGCCAT+GGG - Chr8:61698867-61698886 MsG0880045607.01.T01:intron 35.0%
! TGTTCCCAGTGCAAATATTT+TGG - Chr8:61698456-61698475 MsG0880045607.01.T01:intron 35.0%
!! AACTAGAAGATGCTTTGAGA+AGG - Chr8:61698808-61698827 MsG0880045607.01.T01:intron 35.0%
!! GCACAACATCTTAAGTTGAT+TGG - Chr8:61698717-61698736 MsG0880045607.01.T01:intron 35.0%
!!! CGGATTCTTTTCTGAAACTT+TGG + Chr8:61700585-61700604 None:intergenic 35.0%
!!! TTAGCTTTTTTGACGGTAGA+TGG - Chr8:61698405-61698424 MsG0880045607.01.T01:intron 35.0%
AACAGTCATTCTGATGCCAA+TGG - Chr8:61699965-61699984 MsG0880045607.01.T01:intron 40.0%
AAGACATTCTTCTATCCCTG+TGG - Chr8:61700792-61700811 MsG0880045607.01.T01:CDS 40.0%
AAGGACGATAAGTGTGTTGT+CGG + Chr8:61697597-61697616 None:intergenic 40.0%
ATCCCATGGCAAGCAAATAA+AGG + Chr8:61698872-61698891 None:intergenic 40.0%
CCAAAACAAGGAATCTTGCA+TGG + Chr8:61699357-61699376 None:intergenic 40.0%
CGACAAAATAGTGTTTGGGA+GGG + Chr8:61700237-61700256 None:intergenic 40.0%
CTTGATCAGCCTTGAATCTA+CGG + Chr8:61698332-61698351 None:intergenic 40.0%
GACACTTGTATGACATGTGT+CGG - Chr8:61698163-61698182 MsG0880045607.01.T01:intron 40.0%
GATATAGCATGGCATCTTCA+TGG - Chr8:61698573-61698592 MsG0880045607.01.T01:intron 40.0%
GCATCTTCATGGGAACAATT+TGG - Chr8:61698584-61698603 MsG0880045607.01.T01:intron 40.0%
GCTTCGGTGAATGAAAAGTT+TGG + Chr8:61699770-61699789 None:intergenic 40.0%
TAGAACTTAATCCCTGGAGA+CGG - Chr8:61700188-61700207 MsG0880045607.01.T01:intron 40.0%
TCAAGAACGACTCTGTATGA+TGG - Chr8:61699469-61699488 MsG0880045607.01.T01:intron 40.0%
TCGACAAAATAGTGTTTGGG+AGG + Chr8:61700238-61700257 None:intergenic 40.0%
TCTTCAGGTGATAACTTCTC+TGG + Chr8:61699917-61699936 None:intergenic 40.0%
TGAAAGCTGCAAATACAGCA+AGG - Chr8:61698667-61698686 MsG0880045607.01.T01:intron 40.0%
TTTATTTGCTTGCCATGGGA+TGG - Chr8:61698871-61698890 MsG0880045607.01.T01:intron 40.0%
! ACTTGCTAACAATGCCCTAA+GGG - Chr8:61700303-61700322 MsG0880045607.01.T01:intron 40.0%
! CATGCAGGGGATGATTTTAA+AGG - Chr8:61697891-61697910 MsG0880045607.01.T01:intron 40.0%
! CTACCTTTATTTGCTTGCCA+TGG - Chr8:61698866-61698885 MsG0880045607.01.T01:intron 40.0%
! GCATCTTCTAGTTGTTCTAG+AGG + Chr8:61698801-61698820 None:intergenic 40.0%
! GTTGCTATACTTGCTGCATA+AGG - Chr8:61701251-61701270 MsG0880045607.01.T01:intron 40.0%
! TTGTCGACTAGAGTAATGAG+AGG + Chr8:61698957-61698976 None:intergenic 40.0%
!! AACTTGCTAACAATGCCCTA+AGG - Chr8:61700302-61700321 MsG0880045607.01.T01:intron 40.0%
!! CCATGCAAGATTCCTTGTTT+TGG - Chr8:61699354-61699373 MsG0880045607.01.T01:intron 40.0%
!! CTTGCTTCTCTGGAATATTC+AGG - Chr8:61699605-61699624 MsG0880045607.01.T01:intron 40.0%
!! CTTTAAAATCATCCCCTGCA+TGG + Chr8:61697893-61697912 None:intergenic 40.0%
!! TGCTCTAAGAGCACTCTTTA+AGG + Chr8:61700436-61700455 None:intergenic 40.0%
AAGTCATACCATAAACCCCG+CGG + Chr8:61701549-61701568 None:intergenic 45.0%
ACACTGCACTGCAACAACAA+TGG + Chr8:61697805-61697824 None:intergenic 45.0%
AGAACTTAATCCCTGGAGAC+GGG - Chr8:61700189-61700208 MsG0880045607.01.T01:intron 45.0%
AGAAGATCTACACCATGCAG+GGG - Chr8:61697878-61697897 MsG0880045607.01.T01:intron 45.0%
AGAATGACCTTTGCTGCCAT+TGG + Chr8:61699984-61700003 None:intergenic 45.0%
ATTGGATGACGAGGACCAAA+AGG - Chr8:61699667-61699686 MsG0880045607.01.T01:intron 45.0%
CGCAACTAGAACTTAATCCC+TGG - Chr8:61700182-61700201 MsG0880045607.01.T01:intron 45.0%
CTGTGTGAGCTGATATAGCA+TGG - Chr8:61698562-61698581 MsG0880045607.01.T01:intron 45.0%
CTTGGACTTGTCTATCCTCT+TGG - Chr8:61701657-61701676 MsG0880045607.01.T01:five_prime_UTR 45.0%
GAAACCAGAACATGACCAAG+AGG - Chr8:61699706-61699725 MsG0880045607.01.T01:intron 45.0%
GAGAAGATCTACACCATGCA+GGG - Chr8:61697877-61697896 MsG0880045607.01.T01:intron 45.0%
GAGGGATGTCTTGCCTATTA+TGG + Chr8:61700219-61700238 None:intergenic 45.0%
GATTCCATGTACTGTGCAGT+TGG + Chr8:61701838-61701857 None:intergenic 45.0%
GGATCAATGTGCGTACACAT+TGG - Chr8:61699649-61699668 MsG0880045607.01.T01:intron 45.0%
GTTCATATCAGCGGGAAGAT+TGG - Chr8:61700618-61700637 MsG0880045607.01.T01:CDS 45.0%
TGAGAAGATCTACACCATGC+AGG - Chr8:61697876-61697895 MsG0880045607.01.T01:intron 45.0%
TGCTATACAGTTGTCGGACA+CGG + Chr8:61698247-61698266 None:intergenic 45.0%
TTAAGCTATCAACTGACCCC+TGG - Chr8:61699040-61699059 MsG0880045607.01.T01:intron 45.0%
TTCCACACACCGTAGATTCA+AGG - Chr8:61698320-61698339 MsG0880045607.01.T01:intron 45.0%
TTGCATACTTCTGCAGAAGC+TGG + Chr8:61701197-61701216 None:intergenic 45.0%
! GAAAGACAGTCTGCACCTTT+TGG + Chr8:61699685-61699704 None:intergenic 45.0%
! GATTAAGTTCTAGTTGCGCG+AGG + Chr8:61700180-61700199 None:intergenic 45.0%
! GCTATACTTGCTGCATAAGG+AGG - Chr8:61701254-61701273 MsG0880045607.01.T01:intron 45.0%
!! AATCCTTAAAGAGCGCCCTT+AGG + Chr8:61700321-61700340 None:intergenic 45.0%
!! AGGCTAGTGTTGATCTTCTC+AGG + Chr8:61701815-61701834 None:intergenic 45.0%
!! ATCCTTAAAGAGCGCCCTTA+GGG + Chr8:61700320-61700339 None:intergenic 45.0%
!! CTAGTTGTTCTAGAGGCTCT+CGG + Chr8:61698794-61698813 None:intergenic 45.0%
!! TAGTTGTTCTAGAGGCTCTC+GGG + Chr8:61698793-61698812 None:intergenic 45.0%
AGCCTTGAATCTACGGTGTG+TGG + Chr8:61698325-61698344 None:intergenic 50.0%
GCTGCATAAGGAGGAAGCTT+AGG - Chr8:61701263-61701282 MsG0880045607.01.T01:intron 50.0%
GTGTCCTCTTGGTCATGTTC+TGG + Chr8:61699713-61699732 None:intergenic 50.0%
TATGAAGCACGGACACCTCT+AGG - Chr8:61698089-61698108 MsG0880045607.01.T01:CDS 50.0%
TCAGCACTACAGTGTCCTCT+TGG + Chr8:61699724-61699743 None:intergenic 50.0%
TCCATGTACTGTGCAGTTGG+AGG + Chr8:61701835-61701854 None:intergenic 50.0%
TCTGATGCCAATGGCAGCAA+AGG - Chr8:61699974-61699993 MsG0880045607.01.T01:intron 50.0%
TGCGTACACATTGGATGACG+AGG - Chr8:61699658-61699677 MsG0880045607.01.T01:intron 50.0%
!! CAAGTGTCATAGGAGTGTCG+CGG + Chr8:61698151-61698170 None:intergenic 50.0%
CATGACACGCTAGGTCCTAG+AGG + Chr8:61698107-61698126 None:intergenic 55.0%
CTAGAGGCTCTCGGGTTTCA+GGG + Chr8:61698785-61698804 None:intergenic 55.0%
GCCTCCAACTGCACAGTACA+TGG - Chr8:61701831-61701850 MsG0880045607.01.T01:five_prime_UTR 55.0%
GGAGACGGGCAAGCCATAAT+AGG - Chr8:61700203-61700222 MsG0880045607.01.T01:intron 55.0%
GTCAGACACCATGACACGCT+AGG + Chr8:61698116-61698135 None:intergenic 55.0%
GTGCAAATCCGCGGGGTTTA+TGG - Chr8:61701538-61701557 MsG0880045607.01.T01:intron 55.0%
TCTAGAGGCTCTCGGGTTTC+AGG + Chr8:61698786-61698805 None:intergenic 55.0%
! ATGCTCGTGCTACTCGAGTC+AGG - Chr8:61698976-61698995 MsG0880045607.01.T01:CDS 55.0%
! ATTATGGCTTGCCCGTCTCC+AGG + Chr8:61700203-61700222 None:intergenic 55.0%
! TGCTCGTGCTACTCGAGTCA+GGG - Chr8:61698977-61698996 MsG0880045607.01.T01:CDS 55.0%
! TGGAGGGAAGTGCAAATCCG+CGG - Chr8:61701529-61701548 MsG0880045607.01.T01:intron 55.0%
! TTATGGCTTGCCCGTCTCCA+GGG + Chr8:61700202-61700221 None:intergenic 55.0%
!! CTCTAGGACCTAGCGTGTCA+TGG - Chr8:61698105-61698124 MsG0880045607.01.T01:intron 55.0%
!! TGCCCTAAGGGCGCTCTTTA+AGG - Chr8:61700315-61700334 MsG0880045607.01.T01:intron 55.0%
! GAGGGAAGTGCAAATCCGCG+GGG - Chr8:61701531-61701550 MsG0880045607.01.T01:intron 60.0%
! GGAGGGAAGTGCAAATCCGC+GGG - Chr8:61701530-61701549 MsG0880045607.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 61697521 61702067 61697521 ID=MsG0880045607.01;Name=MsG0880045607.01
Chr8 mRNA 61697521 61702067 61697521 ID=MsG0880045607.01.T01;Parent=MsG0880045607.01;Name=MsG0880045607.01.T01;_AED=0.33;_eAED=0.33;_QI=531|0.71|0.75|1|0.71|0.5|8|202|255
Chr8 exon 61697521 61697781 61697521 ID=MsG0880045607.01.T01:exon:23575;Parent=MsG0880045607.01.T01
Chr8 exon 61698029 61698122 61698029 ID=MsG0880045607.01.T01:exon:23574;Parent=MsG0880045607.01.T01
Chr8 exon 61698350 61698390 61698350 ID=MsG0880045607.01.T01:exon:23573;Parent=MsG0880045607.01.T01
Chr8 exon 61698730 61698801 61698730 ID=MsG0880045607.01.T01:exon:23572;Parent=MsG0880045607.01.T01
Chr8 exon 61698908 61699008 61698908 ID=MsG0880045607.01.T01:exon:23571;Parent=MsG0880045607.01.T01
Chr8 exon 61699900 61699961 61699900 ID=MsG0880045607.01.T01:exon:23570;Parent=MsG0880045607.01.T01
Chr8 exon 61700590 61701033 61700590 ID=MsG0880045607.01.T01:exon:23569;Parent=MsG0880045607.01.T01
Chr8 exon 61701642 61702067 61701642 ID=MsG0880045607.01.T01:exon:23568;Parent=MsG0880045607.01.T01
Chr8 five_prime_UTR 61701642 61702067 61701642 ID=MsG0880045607.01.T01:five_prime_utr;Parent=MsG0880045607.01.T01
Chr8 five_prime_UTR 61700929 61701033 61700929 ID=MsG0880045607.01.T01:five_prime_utr;Parent=MsG0880045607.01.T01
Chr8 CDS 61700590 61700928 61700590 ID=MsG0880045607.01.T01:cds;Parent=MsG0880045607.01.T01
Chr8 CDS 61699900 61699961 61699900 ID=MsG0880045607.01.T01:cds;Parent=MsG0880045607.01.T01
Chr8 CDS 61698908 61699008 61698908 ID=MsG0880045607.01.T01:cds;Parent=MsG0880045607.01.T01
Chr8 CDS 61698730 61698801 61698730 ID=MsG0880045607.01.T01:cds;Parent=MsG0880045607.01.T01
Chr8 CDS 61698350 61698390 61698350 ID=MsG0880045607.01.T01:cds;Parent=MsG0880045607.01.T01
Chr8 CDS 61698029 61698122 61698029 ID=MsG0880045607.01.T01:cds;Parent=MsG0880045607.01.T01
Chr8 CDS 61697723 61697781 61697723 ID=MsG0880045607.01.T01:cds;Parent=MsG0880045607.01.T01
Chr8 three_prime_UTR 61697521 61697722 61697521 ID=MsG0880045607.01.T01:three_prime_utr;Parent=MsG0880045607.01.T01
Gene Sequence

>MsG0880045607.01.T01

ATGATTGTGAAAGCTGCAAATACAGCAAGGATGCATAAGAAGAACTGCAGACAGTTTGCACAACATCTTAAGTTGATTGGGAACTTGCTTGATCAGCTCAAGATCTCAGAGCTTAAGAAGTACCCTGAAACCCGAGAGCCTCTAGAACAACTAGAAGATGCTTTGAGAAGGTCATATATTTTGGTCAATAGTTGTCAGGATCGCAGCTACCTTTATTTGCTTGCCATGGGATGGAACATTGTTTATCAATTTAGGAAGGCTCAAAATGAAATTGATCGATACTTGCGTCTTGTTCCTCTCATTACTCTAGTCGACAATGCTCGTGCTACTCGAGTCAGGGAGAGACTTGAAGTTATTGAAAGGATCAATGTGCGTACACATTGGATGACGAGGACCAAAAGAACCAAAGTTTCAGAAAAGAATCCGGTGTCAACTAAAAGTTCATATCAGCGGGAAGATTGGCATACTGATTTACTTGCTTGTTGTTCTGAACCTTATCTTTGTATAAAGACATTCTTCTATCCCTGTGGAACATTTTCAAAGATTGCTACTGTTGCAACCAACAGACCAATATCTTCTGCAGAAGTATGCAATGACTTTATTGCATATTCGTTGGGAGGCTATGTTGATGATTTTCTTTCTCATTTGATGTGTTGTTCTTGCGCTCTTGTACAAGAATGGAGGGAAGTGCAAATCCGCGGGGTTTATGAAGAACCTGAGAAGATCAACACTAGCCTCCAACTGCACAGTACATGGAATCTTAAATAA
Protein sequence

>MsG0880045607.01.T01

MIVKAANTARMHKKNCRQFAQHLKLIGNLLDQLKISELKKYPETREPLEQLEDALRRSYILVNSCQDRSYLYLLAMGWNIVYQFRKAQNEIDRYLRLVPLITLVDNARATRVRERLEVIERINVRTHWMTRTKRTKVSEKNPVSTKSSYQREDWHTDLLACCSEPYLCIKTFFYPCGTFSKIATVATNRPISSAEVCNDFIAYSLGGYVDDFLSHLMCCSCALVQEWREVQIRGVYEEPEKINTSLQLHSTWNLK*