AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002193.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002193.01.T01 MTR_3g047490 41.194 335 176 6 1 326 1 323 8.32e-76 238
MsG0180002193.01.T01 MTR_5g049460 36.788 386 202 8 24 373 19 398 1.17e-75 242
MsG0180002193.01.T01 MTR_6g039060 37.500 368 213 6 24 377 19 383 8.14e-75 242
MsG0180002193.01.T01 MTR_0010s0130 41.786 280 153 5 24 297 19 294 1.83e-64 217
MsG0180002193.01.T01 MTR_0752s0020 37.417 302 156 7 1 297 1 274 2.00e-56 195
MsG0180002193.01.T01 MTR_4g053915 35.465 344 199 6 14 342 13 348 3.13e-56 192
MsG0180002193.01.T01 MTR_6g052660 35.625 320 185 5 37 342 8 320 5.85e-55 191
MsG0180002193.01.T01 MTR_0387s0030 36.308 325 154 5 24 345 19 293 4.26e-54 190
MsG0180002193.01.T01 MTR_6g049080 35.577 312 160 4 24 335 19 289 1.08e-53 182
MsG0180002193.01.T01 MTR_4g119430 35.826 321 189 7 26 334 24 339 5.86e-53 186
MsG0180002193.01.T01 MTR_7g068680 36.213 301 177 4 14 304 13 308 9.48e-53 181
MsG0180002193.01.T01 MTR_0195s0040 33.945 327 203 6 26 342 25 348 5.29e-52 183
MsG0180002193.01.T01 MTR_7g009270 35.514 321 190 7 26 334 25 340 3.17e-51 184
MsG0180002193.01.T01 MTR_0132s0050 36.735 343 162 8 1 335 1 296 9.42e-51 177
MsG0180002193.01.T01 MTR_0547s0010 41.150 226 125 4 113 335 1 221 3.02e-50 175
MsG0180002193.01.T01 MTR_4g046907 39.914 233 132 4 113 342 1 228 3.72e-50 175
MsG0180002193.01.T01 MTR_3g048350 35.855 304 180 6 37 329 8 307 1.31e-49 179
MsG0180002193.01.T01 MTR_0454s0020 35.691 311 183 7 36 334 147 452 1.48e-49 176
MsG0180002193.01.T01 MTR_5g056945 36.709 316 177 8 1 303 1 306 1.88e-49 169
MsG0180002193.01.T01 MTR_1465s0010 35.577 312 162 7 26 329 13 293 3.86e-49 172
MsG0180002193.01.T01 MTR_6g047410 34.637 358 207 9 1 342 1 347 3.78e-48 175
MsG0180002193.01.T01 MTR_7g099763 38.113 265 156 4 26 282 24 288 1.02e-47 164
MsG0180002193.01.T01 MTR_5g084777 35.806 310 178 7 26 323 24 324 3.76e-47 172
MsG0180002193.01.T01 MTR_5g459570 35.806 310 178 7 26 323 24 324 1.28e-46 169
MsG0180002193.01.T01 MTR_1g053665 40.265 226 121 4 80 297 24 243 6.38e-46 161
MsG0180002193.01.T01 MTR_6g471790 38.911 257 141 5 26 270 24 276 6.91e-46 169
MsG0180002193.01.T01 MTR_8g012072 38.911 257 141 5 26 270 24 276 7.22e-46 168
MsG0180002193.01.T01 MTR_0133s0060 35.806 310 178 7 26 323 24 324 8.47e-46 168
MsG0180002193.01.T01 MTR_8g087757 35.806 310 178 7 26 323 24 324 9.45e-46 168
MsG0180002193.01.T01 MTR_3g436570 35.484 310 179 7 26 323 24 324 2.43e-45 167
MsG0180002193.01.T01 MTR_7g024373 35.484 310 179 7 26 323 24 324 8.43e-45 165
MsG0180002193.01.T01 MTR_0015s0160 32.537 335 205 6 14 334 13 340 3.53e-44 160
MsG0180002193.01.T01 MTR_6g033905 33.028 327 163 6 14 334 13 289 4.60e-42 155
MsG0180002193.01.T01 MTR_8g468090 33.213 277 154 7 68 334 2 257 8.14e-38 143
MsG0180002193.01.T01 MTR_0322s0040 31.790 324 176 9 14 329 13 299 5.77e-37 139
MsG0180002193.01.T01 MTR_3g450160 31.111 270 169 6 72 329 1 265 1.40e-35 137
MsG0180002193.01.T01 MTR_7g027027 41.143 175 96 3 26 193 24 198 5.65e-30 114
MsG0180002193.01.T01 MTR_0324s0040 31.489 235 142 5 106 329 10 236 1.37e-29 117
MsG0180002193.01.T01 MTR_5g056860 29.630 324 158 8 14 329 13 274 5.50e-27 113
MsG0180002193.01.T01 MTR_7g038780 28.076 317 201 8 14 327 13 305 6.87e-27 111
MsG0180002193.01.T01 MTR_0002s0140 43.066 137 74 1 24 156 19 155 1.81e-26 106
MsG0180002193.01.T01 MTR_3g047110 40.179 112 66 1 204 315 30 140 7.82e-25 101
MsG0180002193.01.T01 MTR_1g099290 29.392 296 142 10 62 347 320 558 1.64e-24 105
MsG0180002193.01.T01 MTR_6g464050 30.804 224 109 4 26 246 25 205 1.93e-24 105
MsG0180002193.01.T01 MTR_7g045830 29.032 341 187 9 30 355 1 301 1.08e-23 101
MsG0180002193.01.T01 MTR_0450s0010 30.488 164 107 2 183 342 1 161 2.41e-21 94.4
MsG0180002193.01.T01 MTR_5g049140 31.515 165 104 4 183 342 1 161 7.95e-20 91.3
MsG0180002193.01.T01 MTR_1638s0010 43.564 101 56 1 235 335 1 100 1.45e-19 89.4
MsG0180002193.01.T01 MTR_1g052035 30.435 161 101 3 175 329 99 254 1.21e-17 82.8
MsG0180002193.01.T01 MTR_1g052035 42.424 99 52 3 1 99 1 94 3.07e-12 67.0
MsG0180002193.01.T01 MTR_3g436840 46.939 98 49 2 1 98 1 95 1.46e-15 78.2
MsG0180002193.01.T01 MTR_3g035410 40.594 101 59 1 235 335 1 100 6.74e-15 75.1
MsG0180002193.01.T01 MTR_1g423950 47.945 73 38 0 26 98 24 96 1.83e-14 69.7
MsG0180002193.01.T01 MTR_3g040210 43.902 82 44 1 20 99 4 85 8.59e-13 69.7
MsG0180002193.01.T01 MTR_3g031890 43.210 81 44 1 26 104 25 105 3.01e-12 64.3
MsG0180002193.01.T01 MTR_0016s0150 43.333 90 50 1 246 335 208 296 1.10e-11 67.0
MsG0180002193.01.T01 MTR_0003s0350 24.775 222 131 7 56 273 21 210 6.06e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 95 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACTTTCCTTCCATCTTTA+AGG 0.121511 1:+34536863 MsG0180002193.01.T01:CDS
TGCTTCTGATGAATGCTTTA+AGG 0.139220 1:+34536722 MsG0180002193.01.T01:CDS
ACTGATTTGGCTAAGATTTC+AGG 0.173949 1:-34536894 None:intergenic
AGTCCACTGGTGATTCTATT+TGG 0.200548 1:-34536017 None:intergenic
TGATTCTATTTGGATGATTA+AGG 0.214385 1:-34536007 None:intergenic
CTTCCTTCTTGACTATTTCT+TGG 0.219774 1:-34536359 None:intergenic
CAGAAGAAACTGAGATTATC+AGG 0.242154 1:+34536841 MsG0180002193.01.T01:CDS
GGTTACTACAACACTCTTCT+AGG 0.298713 1:+34536396 MsG0180002193.01.T01:CDS
GAGTATTTCAAGATGCTAAA+TGG 0.300004 1:+34536102 MsG0180002193.01.T01:CDS
TTGTAGACGGAACCAGATTC+TGG 0.300642 1:-34535955 None:intergenic
AATTTACTTCATGGCTATTC+TGG 0.318612 1:+34536545 MsG0180002193.01.T01:CDS
TAAGAAGTACGAAGTGAAAA+TGG 0.321527 1:+34536050 MsG0180002193.01.T01:CDS
ACATCTTCAGTGATGGTTAT+AGG 0.326658 1:-34536297 None:intergenic
GAAGCTAGCAATTTACTTCA+TGG 0.334384 1:+34536536 MsG0180002193.01.T01:CDS
CATTTGGTAGCTTAGAAATA+AGG 0.346291 1:+34536256 MsG0180002193.01.T01:CDS
AGATGATCCATTACATATCT+TGG 0.352507 1:-34536582 None:intergenic
GCTAGCTTCTGTTGGTTGTT+GGG 0.363964 1:-34536522 None:intergenic
TGCTAGCTTCTGTTGGTTGT+TGG 0.366897 1:-34536523 None:intergenic
ATCAGTAACTGCTGCTGATA+AGG 0.367769 1:+34537001 MsG0180002193.01.T01:CDS
GGAAGGAAGCAAGTGCCTTA+TGG 0.369429 1:+34536636 MsG0180002193.01.T01:CDS
ATGCAAAGCGCACCAGAATC+TGG 0.391715 1:+34535943 MsG0180002193.01.T01:CDS
GACGTACTCAGCTACTGATT+TGG 0.406159 1:-34536907 None:intergenic
GATATGAATCCTACCTCATT+TGG 0.406890 1:+34536240 MsG0180002193.01.T01:CDS
AGGATTGCTTTCCTTAAAGA+TGG 0.427659 1:-34536874 None:intergenic
CCTCAGGAGGAAGCTGCTCC+TGG 0.431290 1:+34536948 MsG0180002193.01.T01:CDS
AGATGCCAAGCCTTCTGAAA+TGG 0.435555 1:+34536428 MsG0180002193.01.T01:CDS
AGTATTTCAAGATGCTAAAT+GGG 0.444412 1:+34536103 MsG0180002193.01.T01:CDS
TCAGTAACTGCTGCTGATAA+GGG 0.453665 1:+34537002 MsG0180002193.01.T01:CDS
GATGATCCATTACATATCTT+GGG 0.455203 1:-34536581 None:intergenic
GAGGAAGCTGCTCCTGGAAA+AGG 0.462450 1:+34536954 MsG0180002193.01.T01:CDS
TAGCAAAACCTTGCATTCCA+TGG 0.464145 1:+34536770 MsG0180002193.01.T01:CDS
TGGAAAAGGAAAGAAATTCA+AGG 0.466677 1:+34536968 MsG0180002193.01.T01:CDS
CCAGGAGCAGCTTCCTCCTG+AGG 0.473137 1:-34536948 None:intergenic
ATGTAATGGATCATCTCTGC+TGG 0.475466 1:+34536589 MsG0180002193.01.T01:CDS
AGAAATAAGGTCTGAAGTGA+TGG 0.475662 1:+34536269 MsG0180002193.01.T01:CDS
AAACTTCCCAAGATATGTAA+TGG 0.477975 1:+34536575 MsG0180002193.01.T01:CDS
GATTACTTCTTTCAAAGAGC+AGG 0.486005 1:+34536486 MsG0180002193.01.T01:CDS
TGGGCCAACGTATGTGAACT+TGG 0.488086 1:+34536122 MsG0180002193.01.T01:CDS
AATCTCCATTTCAGAAGGCT+TGG 0.489126 1:-34536433 None:intergenic
CTGAAATGGAGATTCACAAC+AGG 0.491040 1:+34536442 MsG0180002193.01.T01:CDS
CGTCTACAAAGAGAAGACTA+TGG 0.494640 1:+34535969 MsG0180002193.01.T01:CDS
TATTTCTAAGCTACCAAATG+AGG 0.500273 1:-34536253 None:intergenic
AAACAAGCTGGGTCAAAGAA+AGG 0.502080 1:+34536204 MsG0180002193.01.T01:CDS
ATTCCAAGAAATAGTCAAGA+AGG 0.506386 1:+34536356 MsG0180002193.01.T01:CDS
AACAAGCTGGGTCAAAGAAA+GGG 0.513083 1:+34536205 MsG0180002193.01.T01:CDS
GATAATCTCAGTTTCTTCTG+TGG 0.513558 1:-34536838 None:intergenic
TTGCTTTCCTTAAAGATGGA+AGG 0.514161 1:-34536870 None:intergenic
GAGGGCTAGCATCTTCCTCC+AGG 0.519581 1:-34536929 None:intergenic
ATCAGTAGCTGAGTACGTCC+TGG 0.521644 1:+34536911 MsG0180002193.01.T01:CDS
TGGTGCGCTTTGCATGTTTG+AGG 0.522368 1:-34535935 None:intergenic
TCAGACAATAATCTTCCATA+AGG 0.522388 1:-34536651 None:intergenic
CTTTCATCAAGGAAGAGTAC+TGG 0.523548 1:+34536677 MsG0180002193.01.T01:CDS
TTGTGAATCTCCATTTCAGA+AGG 0.526263 1:-34536438 None:intergenic
AGCTATAACATCTTCAGTGA+TGG 0.527913 1:-34536304 None:intergenic
GGAGGAAGATGCTAGCCCTC+AGG 0.536228 1:+34536932 MsG0180002193.01.T01:CDS
CAGGAGCAGCTTCCTCCTGA+GGG 0.538045 1:-34536947 None:intergenic
CATAGTCTTCTCTTTGTAGA+CGG 0.547125 1:-34535968 None:intergenic
AAAGTCGTAAGCAAACAAGC+TGG 0.548529 1:+34536192 MsG0180002193.01.T01:CDS
TGTTGTAGTAACCTTGTAGC+AGG 0.549844 1:-34536386 None:intergenic
TACTTCTTTCAAAGAGCAGG+AGG 0.552056 1:+34536489 MsG0180002193.01.T01:CDS
AGAAGACTATGGATATTCCA+TGG 0.558731 1:+34535980 MsG0180002193.01.T01:CDS
AAGGAAGATGTCCTGCTACA+AGG 0.559884 1:+34536375 MsG0180002193.01.T01:CDS
GAAATAAGGTCTGAAGTGAT+GGG 0.560325 1:+34536270 MsG0180002193.01.T01:CDS
ACGCCCCTCAAGATGAAAAG+TGG 0.563834 1:+34536805 MsG0180002193.01.T01:CDS
AAGTACGAAGTGAAAATGGA+AGG 0.571542 1:+34536054 MsG0180002193.01.T01:CDS
GCTTGTAGAATGAATGCAGA+GGG 0.573317 1:+34536330 MsG0180002193.01.T01:CDS
GGAAAAGGAAAGAAATTCAA+GGG 0.574823 1:+34536969 MsG0180002193.01.T01:CDS
AGCAAAACCTTGCATTCCAT+GGG 0.575253 1:+34536771 MsG0180002193.01.T01:CDS
AGTAAATTGCTAGCTTCTGT+TGG 0.575517 1:-34536530 None:intergenic
TTGTCTGAGATCTTTCATCA+AGG 0.578810 1:+34536666 MsG0180002193.01.T01:CDS
ATAAATGAAAACACTATCAG+AGG 0.582313 1:+34536615 MsG0180002193.01.T01:CDS
GAACTGACCCATGGAATGCA+AGG 0.582675 1:-34536778 None:intergenic
CCCTCAAGATGAAAAGTGGT+TGG 0.585012 1:+34536809 MsG0180002193.01.T01:CDS
TTAAGTGAAGCAAAGTCCAC+TGG 0.586070 1:-34536030 None:intergenic
GGCGTTCTTGAACTGACCCA+TGG 0.587910 1:-34536787 None:intergenic
GGAGATTCACAACAGGATGT+TGG 0.588861 1:+34536449 MsG0180002193.01.T01:CDS
ACAGATAGTCTTCTTAGCAG+TGG 0.589061 1:-34536748 None:intergenic
AAGTCGTAAGCAAACAAGCT+GGG 0.591113 1:+34536193 MsG0180002193.01.T01:CDS
TGGATGATTAAGGATTTCCA+TGG 0.594472 1:-34535997 None:intergenic
TGAGGTAGGATTCATATCCA+TGG 0.598370 1:-34536235 None:intergenic
TCTAAGCTACCAAATGAGGT+AGG 0.598685 1:-34536249 None:intergenic
TGTAATGGATCATCTCTGCT+GGG 0.603759 1:+34536590 MsG0180002193.01.T01:CDS
ATGAAAACACTATCAGAGGA+AGG 0.606692 1:+34536619 MsG0180002193.01.T01:CDS
ACTACAACACTCTTCTAGGT+GGG 0.614907 1:+34536400 MsG0180002193.01.T01:CDS
TACTACAACACTCTTCTAGG+TGG 0.621612 1:+34536399 MsG0180002193.01.T01:CDS
GGAAGATGCTAGCCCTCAGG+AGG 0.635001 1:+34536935 MsG0180002193.01.T01:CDS
TTGACCAAGTTCACATACGT+TGG 0.639223 1:-34536126 None:intergenic
AAAGAAAGGGAAAATGACCA+TGG 0.644554 1:+34536218 MsG0180002193.01.T01:CDS
AGAAGAAACTGAGATTATCA+GGG 0.650804 1:+34536842 MsG0180002193.01.T01:CDS
ACTTCTTTCAAAGAGCAGGA+GGG 0.651248 1:+34536490 MsG0180002193.01.T01:CDS
GGACTTCTTGAGAAAGACAA+GGG 0.657401 1:+34536698 MsG0180002193.01.T01:CDS
TGGACTTCTTGAGAAAGACA+AGG 0.671954 1:+34536697 MsG0180002193.01.T01:CDS
CATCCAAATAGAATCACCAG+TGG 0.684399 1:+34536014 MsG0180002193.01.T01:CDS
AGTAGCTGAGTACGTCCTGG+AGG 0.693792 1:+34536914 MsG0180002193.01.T01:CDS
AGCTTGTAGAATGAATGCAG+AGG 0.720094 1:+34536329 MsG0180002193.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTATTTCAAGATGCTAAAT+GGG + Chr1:34536103-34536122 MsG0180002193.01.T01:CDS 25.0%
! ATAAATGAAAACACTATCAG+AGG + Chr1:34536615-34536634 MsG0180002193.01.T01:CDS 25.0%
! TGATTCTATTTGGATGATTA+AGG - Chr1:34536010-34536029 None:intergenic 25.0%
AAACTTCCCAAGATATGTAA+TGG + Chr1:34536575-34536594 MsG0180002193.01.T01:CDS 30.0%
AATTTACTTCATGGCTATTC+TGG + Chr1:34536545-34536564 MsG0180002193.01.T01:CDS 30.0%
AGAAGAAACTGAGATTATCA+GGG + Chr1:34536842-34536861 MsG0180002193.01.T01:CDS 30.0%
AGATGATCCATTACATATCT+TGG - Chr1:34536585-34536604 None:intergenic 30.0%
ATTCCAAGAAATAGTCAAGA+AGG + Chr1:34536356-34536375 MsG0180002193.01.T01:CDS 30.0%
GAGTATTTCAAGATGCTAAA+TGG + Chr1:34536102-34536121 MsG0180002193.01.T01:CDS 30.0%
GATGATCCATTACATATCTT+GGG - Chr1:34536584-34536603 None:intergenic 30.0%
GGAAAAGGAAAGAAATTCAA+GGG + Chr1:34536969-34536988 MsG0180002193.01.T01:CDS 30.0%
TCAGACAATAATCTTCCATA+AGG - Chr1:34536654-34536673 None:intergenic 30.0%
TGGAAAAGGAAAGAAATTCA+AGG + Chr1:34536968-34536987 MsG0180002193.01.T01:CDS 30.0%
! CATTTGGTAGCTTAGAAATA+AGG + Chr1:34536256-34536275 MsG0180002193.01.T01:CDS 30.0%
! TAAGAAGTACGAAGTGAAAA+TGG + Chr1:34536050-34536069 MsG0180002193.01.T01:CDS 30.0%
! TATTTCTAAGCTACCAAATG+AGG - Chr1:34536256-34536275 None:intergenic 30.0%
! TGAACTTGGTCAATGATTTT+TGG + Chr1:34536136-34536155 MsG0180002193.01.T01:CDS 30.0%
! TTGAATTTCTTTCCTTTTCC+AGG - Chr1:34536969-34536988 None:intergenic 30.0%
!!! GGTCAATGATTTTTGGTTAA+GGG + Chr1:34536143-34536162 MsG0180002193.01.T01:CDS 30.0%
!!! TGGTCAATGATTTTTGGTTA+AGG + Chr1:34536142-34536161 MsG0180002193.01.T01:CDS 30.0%
AAAGAAAGGGAAAATGACCA+TGG + Chr1:34536218-34536237 MsG0180002193.01.T01:CDS 35.0%
AAGTACGAAGTGAAAATGGA+AGG + Chr1:34536054-34536073 MsG0180002193.01.T01:CDS 35.0%
ACATCTTCAGTGATGGTTAT+AGG - Chr1:34536300-34536319 None:intergenic 35.0%
AGAAGACTATGGATATTCCA+TGG + Chr1:34535980-34535999 MsG0180002193.01.T01:CDS 35.0%
AGCTATAACATCTTCAGTGA+TGG - Chr1:34536307-34536326 None:intergenic 35.0%
AGGATTGCTTTCCTTAAAGA+TGG - Chr1:34536877-34536896 None:intergenic 35.0%
ATGAAAACACTATCAGAGGA+AGG + Chr1:34536619-34536638 MsG0180002193.01.T01:CDS 35.0%
CAGAAGAAACTGAGATTATC+AGG + Chr1:34536841-34536860 MsG0180002193.01.T01:CDS 35.0%
CATAGTCTTCTCTTTGTAGA+CGG - Chr1:34535971-34535990 None:intergenic 35.0%
GAAGCTAGCAATTTACTTCA+TGG + Chr1:34536536-34536555 MsG0180002193.01.T01:CDS 35.0%
GATAATCTCAGTTTCTTCTG+TGG - Chr1:34536841-34536860 None:intergenic 35.0%
GATATGAATCCTACCTCATT+TGG + Chr1:34536240-34536259 MsG0180002193.01.T01:CDS 35.0%
GATTACTTCTTTCAAAGAGC+AGG + Chr1:34536486-34536505 MsG0180002193.01.T01:CDS 35.0%
TGCTTCTGATGAATGCTTTA+AGG + Chr1:34536722-34536741 MsG0180002193.01.T01:CDS 35.0%
TGGATGATTAAGGATTTCCA+TGG - Chr1:34536000-34536019 None:intergenic 35.0%
TTGCTTTCCTTAAAGATGGA+AGG - Chr1:34536873-34536892 None:intergenic 35.0%
TTGTGAATCTCCATTTCAGA+AGG - Chr1:34536441-34536460 None:intergenic 35.0%
! AGAAATAAGGTCTGAAGTGA+TGG + Chr1:34536269-34536288 MsG0180002193.01.T01:CDS 35.0%
! AGTAAATTGCTAGCTTCTGT+TGG - Chr1:34536533-34536552 None:intergenic 35.0%
! CTTCCTTCTTGACTATTTCT+TGG - Chr1:34536362-34536381 None:intergenic 35.0%
! GAAATAAGGTCTGAAGTGAT+GGG + Chr1:34536270-34536289 MsG0180002193.01.T01:CDS 35.0%
! TTGTCTGAGATCTTTCATCA+AGG + Chr1:34536666-34536685 MsG0180002193.01.T01:CDS 35.0%
!! ACTGATTTGGCTAAGATTTC+AGG - Chr1:34536897-34536916 None:intergenic 35.0%
AAACAAGCTGGGTCAAAGAA+AGG + Chr1:34536204-34536223 MsG0180002193.01.T01:CDS 40.0%
AAAGTCGTAAGCAAACAAGC+TGG + Chr1:34536192-34536211 MsG0180002193.01.T01:CDS 40.0%
AACAAGCTGGGTCAAAGAAA+GGG + Chr1:34536205-34536224 MsG0180002193.01.T01:CDS 40.0%
AAGTCGTAAGCAAACAAGCT+GGG + Chr1:34536193-34536212 MsG0180002193.01.T01:CDS 40.0%
AATCTCCATTTCAGAAGGCT+TGG - Chr1:34536436-34536455 None:intergenic 40.0%
ACAGATAGTCTTCTTAGCAG+TGG - Chr1:34536751-34536770 None:intergenic 40.0%
ACTACAACACTCTTCTAGGT+GGG + Chr1:34536400-34536419 MsG0180002193.01.T01:CDS 40.0%
ACTTCTTTCAAAGAGCAGGA+GGG + Chr1:34536490-34536509 MsG0180002193.01.T01:CDS 40.0%
AGCAAAACCTTGCATTCCAT+GGG + Chr1:34536771-34536790 MsG0180002193.01.T01:CDS 40.0%
AGCTTGTAGAATGAATGCAG+AGG + Chr1:34536329-34536348 MsG0180002193.01.T01:CDS 40.0%
AGTCCACTGGTGATTCTATT+TGG - Chr1:34536020-34536039 None:intergenic 40.0%
ATCAGTAACTGCTGCTGATA+AGG + Chr1:34537001-34537020 MsG0180002193.01.T01:CDS 40.0%
CATCCAAATAGAATCACCAG+TGG + Chr1:34536014-34536033 MsG0180002193.01.T01:CDS 40.0%
CGTCTACAAAGAGAAGACTA+TGG + Chr1:34535969-34535988 MsG0180002193.01.T01:CDS 40.0%
CTGAAATGGAGATTCACAAC+AGG + Chr1:34536442-34536461 MsG0180002193.01.T01:CDS 40.0%
GCTTGTAGAATGAATGCAGA+GGG + Chr1:34536330-34536349 MsG0180002193.01.T01:CDS 40.0%
GGACTTCTTGAGAAAGACAA+GGG + Chr1:34536698-34536717 MsG0180002193.01.T01:CDS 40.0%
GGACTTTCCTTCCATCTTTA+AGG + Chr1:34536863-34536882 MsG0180002193.01.T01:CDS 40.0%
GGTTACTACAACACTCTTCT+AGG + Chr1:34536396-34536415 MsG0180002193.01.T01:CDS 40.0%
TACTACAACACTCTTCTAGG+TGG + Chr1:34536399-34536418 MsG0180002193.01.T01:CDS 40.0%
TACTTCTTTCAAAGAGCAGG+AGG + Chr1:34536489-34536508 MsG0180002193.01.T01:CDS 40.0%
TAGCAAAACCTTGCATTCCA+TGG + Chr1:34536770-34536789 MsG0180002193.01.T01:CDS 40.0%
TCAGTAACTGCTGCTGATAA+GGG + Chr1:34537002-34537021 MsG0180002193.01.T01:CDS 40.0%
TCTAAGCTACCAAATGAGGT+AGG - Chr1:34536252-34536271 None:intergenic 40.0%
TGAGGTAGGATTCATATCCA+TGG - Chr1:34536238-34536257 None:intergenic 40.0%
TGGACTTCTTGAGAAAGACA+AGG + Chr1:34536697-34536716 MsG0180002193.01.T01:CDS 40.0%
TGTTGTAGTAACCTTGTAGC+AGG - Chr1:34536389-34536408 None:intergenic 40.0%
TTAAGTGAAGCAAAGTCCAC+TGG - Chr1:34536033-34536052 None:intergenic 40.0%
TTGACCAAGTTCACATACGT+TGG - Chr1:34536129-34536148 None:intergenic 40.0%
! CTTTCATCAAGGAAGAGTAC+TGG + Chr1:34536677-34536696 MsG0180002193.01.T01:CDS 40.0%
! TGTTTGCTTACGACTTTTGC+AGG - Chr1:34536189-34536208 None:intergenic 40.0%
!! ATGTAATGGATCATCTCTGC+TGG + Chr1:34536589-34536608 MsG0180002193.01.T01:CDS 40.0%
!! CAACCACTTTTCATCTTGAG+GGG - Chr1:34536811-34536830 None:intergenic 40.0%
!! CCAACCACTTTTCATCTTGA+GGG - Chr1:34536812-34536831 None:intergenic 40.0%
!! TCCAACCACTTTTCATCTTG+AGG - Chr1:34536813-34536832 None:intergenic 40.0%
!! TGTAATGGATCATCTCTGCT+GGG + Chr1:34536590-34536609 MsG0180002193.01.T01:CDS 40.0%
!!! TGATTTTTGGTTAAGGGCTG+AGG + Chr1:34536149-34536168 MsG0180002193.01.T01:CDS 40.0%
AAGGAAGATGTCCTGCTACA+AGG + Chr1:34536375-34536394 MsG0180002193.01.T01:CDS 45.0%
CCCTCAAGATGAAAAGTGGT+TGG + Chr1:34536809-34536828 MsG0180002193.01.T01:CDS 45.0%
GGAGATTCACAACAGGATGT+TGG + Chr1:34536449-34536468 MsG0180002193.01.T01:CDS 45.0%
TTGTAGACGGAACCAGATTC+TGG - Chr1:34535958-34535977 None:intergenic 45.0%
! AGATGCCAAGCCTTCTGAAA+TGG + Chr1:34536428-34536447 MsG0180002193.01.T01:CDS 45.0%
! GACGTACTCAGCTACTGATT+TGG - Chr1:34536910-34536929 None:intergenic 45.0%
! GCTAGCTTCTGTTGGTTGTT+GGG - Chr1:34536525-34536544 None:intergenic 45.0%
! TGCTAGCTTCTGTTGGTTGT+TGG - Chr1:34536526-34536545 None:intergenic 45.0%
ACGCCCCTCAAGATGAAAAG+TGG + Chr1:34536805-34536824 MsG0180002193.01.T01:CDS 50.0%
ATCAGTAGCTGAGTACGTCC+TGG + Chr1:34536911-34536930 MsG0180002193.01.T01:CDS 50.0%
ATGCAAAGCGCACCAGAATC+TGG + Chr1:34535943-34535962 MsG0180002193.01.T01:CDS 50.0%
GAACTGACCCATGGAATGCA+AGG - Chr1:34536781-34536800 None:intergenic 50.0%
GGAAGGAAGCAAGTGCCTTA+TGG + Chr1:34536636-34536655 MsG0180002193.01.T01:CDS 50.0%
TGGGCCAACGTATGTGAACT+TGG + Chr1:34536122-34536141 MsG0180002193.01.T01:CDS 50.0%
TGGTGCGCTTTGCATGTTTG+AGG - Chr1:34535938-34535957 None:intergenic 50.0%
AGTAGCTGAGTACGTCCTGG+AGG + Chr1:34536914-34536933 MsG0180002193.01.T01:CDS 55.0%
GAGGAAGCTGCTCCTGGAAA+AGG + Chr1:34536954-34536973 MsG0180002193.01.T01:CDS 55.0%
GGCGTTCTTGAACTGACCCA+TGG - Chr1:34536790-34536809 None:intergenic 55.0%
CAGGAGCAGCTTCCTCCTGA+GGG - Chr1:34536950-34536969 None:intergenic 60.0%
GGAAGATGCTAGCCCTCAGG+AGG + Chr1:34536935-34536954 MsG0180002193.01.T01:CDS 60.0%
GGAGGAAGATGCTAGCCCTC+AGG + Chr1:34536932-34536951 MsG0180002193.01.T01:CDS 60.0%
! GAGGGCTAGCATCTTCCTCC+AGG - Chr1:34536932-34536951 None:intergenic 60.0%
CCAGGAGCAGCTTCCTCCTG+AGG - Chr1:34536951-34536970 None:intergenic 65.0%
CCTCAGGAGGAAGCTGCTCC+TGG + Chr1:34536948-34536967 MsG0180002193.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 34535901 34537034 34535901 ID=MsG0180002193.01;Name=MsG0180002193.01
Chr1 mRNA 34535901 34537034 34535901 ID=MsG0180002193.01.T01;Parent=MsG0180002193.01;Name=MsG0180002193.01.T01;_AED=0.41;_eAED=0.41;_QI=0|-1|0|1|-1|1|1|0|377
Chr1 exon 34535901 34537034 34535901 ID=MsG0180002193.01.T01:exon:1411;Parent=MsG0180002193.01.T01
Chr1 CDS 34535901 34537034 34535901 ID=MsG0180002193.01.T01:cds;Parent=MsG0180002193.01.T01
Gene Sequence

>MsG0180002193.01.T01

ATGGCATCATCAAGCTCAAAAGTTTCAGAATCTACCTCAAACATGCAAAGCGCACCAGAATCTGGTTCCGTCTACAAAGAGAAGACTATGGATATTCCATGGAAATCCTTAATCATCCAAATAGAATCACCAGTGGACTTTGCTTCACTTAAGAAGTACGAAGTGAAAATGGAAGGATTGATAGAAACTCAGAAGCTGTCTGAGTATTTCAAGATGCTAAATGGGCCAACGTATGTGAACTTGGTCAATGATTTTTGGTTAAGGGCTGAGGTGTACAATGAAAAGCCTGCAAAAGTCGTAAGCAAACAAGCTGGGTCAAAGAAAGGGAAAATGACCATGGATATGAATCCTACCTCATTTGGTAGCTTAGAAATAAGGTCTGAAGTGATGGGCATTCCTATAACCATCACTGAAGATGTTATAGCTAAAGCTTGTAGAATGAATGCAGAGGGAAGATTCCAAGAAATAGTCAAGAAGGAAGATGTCCTGCTACAAGGTTACTACAACACTCTTCTAGGTGGGAAGAAAGATGCCAAGCCTTCTGAAATGGAGATTCACAACAGGATGTTGGTGAAATTCAGTAATGATTACTTCTTTCAAAGAGCAGGAGGGTCTGATCAACCCAACAACCAACAGAAGCTAGCAATTTACTTCATGGCTATTCTGGAAAAGATAAACTTCCCAAGATATGTAATGGATCATCTCTGCTGGGCTATAAATGAAAACACTATCAGAGGAAGGAAGCAAGTGCCTTATGGAAGATTATTGTCTGAGATCTTTCATCAAGGAAGAGTACTGGACTTCTTGAGAAAGACAAGGGATGCTTCTGATGAATGCTTTAAGGTTTCCACTGCTAAGAAGACTATCTGTAGCAAAACCTTGCATTCCATGGGTCAGTTCAAGAACGCCCCTCAAGATGAAAAGTGGTTGGAGTTGACCACAGAAGAAACTGAGATTATCAGGGACTTTCCTTCCATCTTTAAGGAAAGCAATCCTGAAATCTTAGCCAAATCAGTAGCTGAGTACGTCCTGGAGGAAGATGCTAGCCCTCAGGAGGAAGCTGCTCCTGGAAAAGGAAAGAAATTCAAGGGAACTACTGCATCAGTAACTGCTGCTGATAAGGGCAAACAATAG
Protein sequence

>MsG0180002193.01.T01

MASSSSKVSESTSNMQSAPESGSVYKEKTMDIPWKSLIIQIESPVDFASLKKYEVKMEGLIETQKLSEYFKMLNGPTYVNLVNDFWLRAEVYNEKPAKVVSKQAGSKKGKMTMDMNPTSFGSLEIRSEVMGIPITITEDVIAKACRMNAEGRFQEIVKKEDVLLQGYYNTLLGGKKDAKPSEMEIHNRMLVKFSNDYFFQRAGGSDQPNNQQKLAIYFMAILEKINFPRYVMDHLCWAINENTIRGRKQVPYGRLLSEIFHQGRVLDFLRKTRDASDECFKVSTAKKTICSKTLHSMGQFKNAPQDEKWLELTTEETEIIRDFPSIFKESNPEILAKSVAEYVLEEDASPQEEAAPGKGKKFKGTTASVTAADKGKQ*