Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022927.01.T01 | XP_013446522.1 | 98.814 | 253 | 3 | 0 | 1 | 253 | 17 | 269 | 1.30E-160 | 456 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022927.01.T01 | Q55A45 | 53.731 | 134 | 46 | 5 | 1 | 126 | 18 | 143 | 6.08E-33 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022927.01.T01 | A0A072TSQ6 | 98.814 | 253 | 3 | 0 | 1 | 253 | 17 | 269 | 6.22e-161 | 456 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004503.01 | MsG0480022927.01 | 0.829718 | 4.401518e-55 | 4.542157e-52 |
| MsG0480020796.01 | MsG0480022927.01 | 0.822189 | 2.706579e-53 | 2.249177e-50 |
| MsG0480022927.01 | MsG0480022955.01 | 0.810357 | 1.199841e-50 | 7.216967e-48 |
| MsG0480022927.01 | MsG0580029754.01 | 0.884568 | 1.715594e-71 | 1.137672e-67 |
| MsG0480022927.01 | MsG0780039937.01 | 0.833750 | 4.456202e-56 | 5.179952e-53 |
| MsG0480022927.01 | MsG0780040174.01 | 0.823128 | 1.636230e-53 | 1.396643e-50 |
| MsG0480022927.01 | MsG0780041311.01 | 0.840485 | 8.453846e-58 | 1.205929e-54 |
| MsG0480022927.01 | MsG0880043595.01 | 0.818144 | 2.284214e-52 | 1.696007e-49 |
| MsG0380017516.01 | MsG0480022927.01 | 0.813041 | 3.128160e-51 | 2.020873e-48 |
| MsG0280006760.01 | MsG0480022927.01 | 0.827925 | 1.194754e-54 | 1.169873e-51 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022927.01.T01 | MTR_8g080090 | 98.814 | 253 | 3 | 0 | 1 | 253 | 17 | 269 | 1.58e-164 | 456 |
| MsG0480022927.01.T01 | MTR_5g092010 | 93.976 | 166 | 7 | 3 | 1 | 165 | 17 | 180 | 2.47e-98 | 288 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022927.01.T01 | AT5G44500 | 63.134 | 217 | 64 | 3 | 1 | 217 | 17 | 217 | 8.19e-70 | 215 |
| MsG0480022927.01.T01 | AT5G44500 | 63.134 | 217 | 64 | 3 | 1 | 217 | 17 | 217 | 8.19e-70 | 215 |
| MsG0480022927.01.T01 | AT4G20440 | 81.081 | 148 | 24 | 3 | 1 | 148 | 17 | 160 | 1.18e-66 | 207 |
| MsG0480022927.01.T01 | AT4G20440 | 81.081 | 148 | 24 | 3 | 1 | 148 | 17 | 160 | 1.18e-66 | 207 |
| MsG0480022927.01.T01 | AT4G20440 | 81.081 | 148 | 24 | 3 | 1 | 148 | 17 | 160 | 1.18e-66 | 207 |
| MsG0480022927.01.T01 | AT4G20440 | 81.081 | 148 | 24 | 3 | 1 | 148 | 17 | 160 | 1.18e-66 | 207 |
| MsG0480022927.01.T01 | AT4G20440 | 81.081 | 148 | 24 | 3 | 1 | 148 | 17 | 160 | 1.18e-66 | 207 |
Find 131 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCAAACTTCCACCTGTAAA+AGG | 0.250965 | 4:+78670921 | MsG0480022927.01.T01:CDS |
| GGTAGTGGTGTTCCTGTCTT+TGG | 0.265332 | 4:+78671509 | MsG0480022927.01.T01:CDS |
| TGTTGTTGTTGCTGCTGATT+TGG | 0.271288 | 4:-78671560 | None:intergenic |
| CAAGCTCAGCCTGGTCTTGC+TGG | 0.294341 | 4:+78671149 | MsG0480022927.01.T01:CDS |
| CCTGGAATTGGTCGTGCTGC+TGG | 0.318434 | 4:+78671095 | MsG0480022927.01.T01:CDS |
| AGCAGCAGCATTAACAGCTT+TGG | 0.339850 | 4:-78671063 | None:intergenic |
| CGTCCACCGGTTTCGTATCC+TGG | 0.354556 | 4:+78671227 | MsG0480022927.01.T01:CDS |
| GGTCCTCCTCCACCGCAATT+TGG | 0.356028 | 4:+78671362 | MsG0480022927.01.T01:CDS |
| CCACCTGGCATACCGGGATA+TGG | 0.364348 | 4:-78671287 | None:intergenic |
| CGAGGCGGCCCCTGCATTCC+AGG | 0.374487 | 4:-78671464 | None:intergenic |
| CCAGGAGGAGGAGGCATTCC+GGG | 0.384559 | 4:-78671488 | None:intergenic |
| ACCAGGAGGAGGAGGCATTC+CGG | 0.385922 | 4:-78671489 | None:intergenic |
| TCCTCCTCATCCTGGAATGC+AGG | 0.390826 | 4:+78671454 | MsG0480022927.01.T01:CDS |
| GCTTTGGAGCGAGATTCTTC+AGG | 0.394190 | 4:-78671047 | None:intergenic |
| GGTATGCCGCCTCCTCAGTA+TGG | 0.402898 | 4:+78671383 | MsG0480022927.01.T01:CDS |
| TGCTGCTGATTTGGAGGAGG+GGG | 0.413241 | 4:-78671551 | None:intergenic |
| ATCATCTGTCCAGGAGGAGG+TGG | 0.414307 | 4:-78671422 | None:intergenic |
| CCTCCTCATCCTGGAATGCA+GGG | 0.419349 | 4:+78671455 | MsG0480022927.01.T01:CDS |
| GCTATGGCTGGTCCTGGAAT+TGG | 0.430223 | 4:+78671083 | MsG0480022927.01.T01:CDS |
| CCCGGAATGCCTCCTCCTCC+TGG | 0.431670 | 4:+78671488 | MsG0480022927.01.T01:CDS |
| GTTAATGCTGCTGCTATGGC+TGG | 0.432756 | 4:+78671071 | MsG0480022927.01.T01:CDS |
| GCTGGTCCTGTTCGTGGTGT+TGG | 0.434114 | 4:+78671167 | MsG0480022927.01.T01:CDS |
| TGTTGTTGCTGCTGATTTGG+AGG | 0.446293 | 4:-78671557 | None:intergenic |
| GTTGCTGCTGATTTGGAGGA+GGG | 0.447696 | 4:-78671553 | None:intergenic |
| CCAGCAGCACGACCAATTCC+AGG | 0.447795 | 4:-78671095 | None:intergenic |
| TCAACTCGTCGGAAAGTTCA+TGG | 0.449599 | 4:+78670851 | MsG0480022927.01.T01:CDS |
| GCTGCTGCTATGGCTGGTCC+TGG | 0.450773 | 4:+78671077 | MsG0480022927.01.T01:CDS |
| GGAGGAGGACCACCAGGTCT+CGG | 0.451190 | 4:-78671350 | None:intergenic |
| CGCCACATGAATCTCGTTCT+CGG | 0.453535 | 4:+78670882 | MsG0480022927.01.T01:CDS |
| CGGAGGACCACCTGGCATAC+CGG | 0.454726 | 4:-78671294 | None:intergenic |
| CCAGGAGGAGGTGGGCCCAT+AGG | 0.458526 | 4:-78671413 | None:intergenic |
| CGAGTGTGCGGCGGTCTTCA+CGG | 0.461195 | 4:-78670965 | None:intergenic |
| ATGCAGGGGCCGCCTCGTCC+CGG | 0.465963 | 4:+78671470 | MsG0480022927.01.T01:CDS |
| GGTCCACCAACACCACGAAC+AGG | 0.467407 | 4:-78671173 | None:intergenic |
| GGCATACCAAATTGCGGTGG+AGG | 0.470578 | 4:-78671368 | None:intergenic |
| AGCTGTTAATGCTGCTGCTA+TGG | 0.475726 | 4:+78671067 | MsG0480022927.01.T01:CDS |
| CTCATCATCTGTCCAGGAGG+AGG | 0.476906 | 4:-78671425 | None:intergenic |
| GTTGTTTCCATGACTGTTGA+AGG | 0.478145 | 4:+78671014 | MsG0480022927.01.T01:CDS |
| TCAGTATGGACAGAGACCTA+TGG | 0.479592 | 4:+78671397 | MsG0480022927.01.T01:CDS |
| GGTGTTGGTGGACCTGCTCC+TGG | 0.479693 | 4:+78671182 | MsG0480022927.01.T01:CDS |
| GGTCTTGCTGGTCCTGTTCG+TGG | 0.480513 | 4:+78671161 | MsG0480022927.01.T01:CDS |
| TTCGTATCCTGGTGGTCCTC+CGG | 0.481130 | 4:+78671238 | MsG0480022927.01.T01:CDS |
| CTGGAATTGGTCGTGCTGCT+GGG | 0.482553 | 4:+78671096 | MsG0480022927.01.T01:CDS |
| AGAGGACCTCCTCCTCATCC+TGG | 0.484171 | 4:+78671446 | MsG0480022927.01.T01:CDS |
| TGTTGCTGCTGATTTGGAGG+AGG | 0.484269 | 4:-78671554 | None:intergenic |
| TGAATAACTGTCGCCGGAGG+AGG | 0.485871 | 4:-78671128 | None:intergenic |
| CGTGAAGACCGCCGCACACT+CGG | 0.489568 | 4:+78670966 | MsG0480022927.01.T01:CDS |
| ATGCCATATCCCGGTATGCC+AGG | 0.490273 | 4:+78671284 | MsG0480022927.01.T01:CDS |
| ACCGGTGGACGCGAGATTTG+CGG | 0.490552 | 4:-78671215 | None:intergenic |
| GGTGGCGGACCACCTGGTCT+CGG | 0.492011 | 4:-78671314 | None:intergenic |
| CCTATGGGCCCACCTCCTCC+TGG | 0.497010 | 4:+78671413 | MsG0480022927.01.T01:CDS |
| GAGCGAGATTCTTCAGGAGG+AGG | 0.498376 | 4:-78671041 | None:intergenic |
| GGAGGAGCAAATTGCGGTGG+CGG | 0.503465 | 4:-78671329 | None:intergenic |
| GCCGCAAATCTCGCGTCCAC+CGG | 0.504423 | 4:+78671214 | MsG0480022927.01.T01:CDS |
| CCGGTGATGCGTCCACCGCC+TGG | 0.505997 | 4:+78671257 | MsG0480022927.01.T01:CDS |
| CTTCGCCGCGGAGGAGGAGA+AGG | 0.510146 | 4:-78670989 | None:intergenic |
| GGAGGACCACCTGGCATACC+GGG | 0.510653 | 4:-78671293 | None:intergenic |
| ATGCCTCCTCCTCCTGGTAG+TGG | 0.510791 | 4:+78671494 | MsG0480022927.01.T01:CDS |
| AATTGCGGTGGCGGACCACC+TGG | 0.511941 | 4:-78671320 | None:intergenic |
| GGACGAGGTGGACCAAAGAC+AGG | 0.514937 | 4:-78671521 | None:intergenic |
| GGTCCTGTTCGTGGTGTTGG+TGG | 0.516931 | 4:+78671170 | MsG0480022927.01.T01:CDS |
| CCTGGTCTCGGAGGACCACC+TGG | 0.517685 | 4:-78671302 | None:intergenic |
| CCAGGCGGTGGACGCATCAC+CGG | 0.518080 | 4:-78671257 | None:intergenic |
| CAATTTGCTCCTCCGAGACC+TGG | 0.521655 | 4:+78671338 | MsG0480022927.01.T01:CDS |
| CGAGATTCTTCAGGAGGAGG+AGG | 0.523409 | 4:-78671038 | None:intergenic |
| CCGGGATATGGCATCTGACC+AGG | 0.523672 | 4:-78671275 | None:intergenic |
| CAACCTCTTCGCCGCGGAGG+AGG | 0.523754 | 4:-78670995 | None:intergenic |
| GGTCCTCTCATCATCTGTCC+AGG | 0.524181 | 4:-78671431 | None:intergenic |
| CCAGGTGGTCCTCCGAGACC+AGG | 0.525026 | 4:+78671302 | MsG0480022927.01.T01:CDS |
| GGCCCCTGCATTCCAGGATG+AGG | 0.526052 | 4:-78671458 | None:intergenic |
| TGCGGTGGAGGAGGACCACC+AGG | 0.528067 | 4:-78671356 | None:intergenic |
| TGCATTCCAGGATGAGGAGG+AGG | 0.529746 | 4:-78671452 | None:intergenic |
| GGAGGAGGCATTCCGGGACG+AGG | 0.529786 | 4:-78671482 | None:intergenic |
| CGCATCACCGGAGGACCACC+AGG | 0.533162 | 4:-78671245 | None:intergenic |
| ATACCAAATTGCGGTGGAGG+AGG | 0.533559 | 4:-78671365 | None:intergenic |
| ATTGGTCGTGCTGCTGGGAG+AGG | 0.539889 | 4:+78671101 | MsG0480022927.01.T01:CDS |
| GGCTGCATCATACCAGGAGC+AGG | 0.540362 | 4:-78671194 | None:intergenic |
| GTCTTTGGTCCACCTCGTCC+CGG | 0.542041 | 4:+78671524 | MsG0480022927.01.T01:CDS |
| TATGGCATCTGACCAGGCGG+TGG | 0.542831 | 4:-78671269 | None:intergenic |
| TCTCCTCCTCCGCGGCGAAG+AGG | 0.543618 | 4:+78670992 | MsG0480022927.01.T01:CDS |
| GAGATTCATGTGGCGGTCGA+AGG | 0.548205 | 4:-78670874 | None:intergenic |
| CAGTATGGACAGAGACCTAT+GGG | 0.551593 | 4:+78671398 | MsG0480022927.01.T01:CDS |
| CTCTGTCCATACTGAGGAGG+CGG | 0.554358 | 4:-78671389 | None:intergenic |
| TTGCTGCTGATTTGGAGGAG+GGG | 0.556892 | 4:-78671552 | None:intergenic |
| GGACCACCAGGATACGAAAC+CGG | 0.557605 | 4:-78671233 | None:intergenic |
| AGGAGGACCTTCAACAGTCA+TGG | 0.558071 | 4:-78671021 | None:intergenic |
| ACAGTTATTCAAGCTCAGCC+TGG | 0.558727 | 4:+78671140 | MsG0480022927.01.T01:CDS |
| TCATCTGTCCAGGAGGAGGT+GGG | 0.563438 | 4:-78671421 | None:intergenic |
| GTCTTCACGGTCACCGTCGG+TGG | 0.565080 | 4:-78670952 | None:intergenic |
| CCCTGCATTCCAGGATGAGG+AGG | 0.566700 | 4:-78671455 | None:intergenic |
| AAGACAGGAACACCACTACC+AGG | 0.567248 | 4:-78671506 | None:intergenic |
| CGAACAGGACCAGCAAGACC+AGG | 0.568021 | 4:-78671158 | None:intergenic |
| CCTGGTCAGATGCCATATCC+CGG | 0.573529 | 4:+78671275 | MsG0480022927.01.T01:CDS |
| TGGGAGAGGTATTCCTCCTC+CGG | 0.576694 | 4:+78671115 | MsG0480022927.01.T01:CDS |
| GCGGTCTTCACGGTCACCGT+CGG | 0.576706 | 4:-78670955 | None:intergenic |
| ATTTGCGGCTGCATCATACC+AGG | 0.577839 | 4:-78671200 | None:intergenic |
| ACACCACTACCAGGAGGAGG+AGG | 0.583299 | 4:-78671497 | None:intergenic |
| TTGGAGCGAGATTCTTCAGG+AGG | 0.585958 | 4:-78671044 | None:intergenic |
| GGAGGAGAAGGCCGAGTGTG+CGG | 0.586029 | 4:-78670977 | None:intergenic |
| TGAGCTTGAATAACTGTCGC+CGG | 0.590066 | 4:-78671134 | None:intergenic |
| CTCCTCATCCTGGAATGCAG+GGG | 0.609249 | 4:+78671456 | MsG0480022927.01.T01:CDS |
| GGAGGCATTCCGGGACGAGG+CGG | 0.610066 | 4:-78671479 | None:intergenic |
| GGAACACCACTACCAGGAGG+AGG | 0.616003 | 4:-78671500 | None:intergenic |
| CAAGACGGTCGTCAACTCGT+CGG | 0.618826 | 4:+78670840 | MsG0480022927.01.T01:CDS |
| TTTGCTCCTCCGAGACCTGG+TGG | 0.625587 | 4:+78671341 | MsG0480022927.01.T01:CDS |
| GGCGGCATACCAAATTGCGG+TGG | 0.627411 | 4:-78671371 | None:intergenic |
| CTCGGAGGAGCAAATTGCGG+TGG | 0.627944 | 4:-78671332 | None:intergenic |
| GGCGGTGGACGCATCACCGG+AGG | 0.634074 | 4:-78671254 | None:intergenic |
| CCTCCTGGACAGATGATGAG+AGG | 0.637519 | 4:+78671428 | MsG0480022927.01.T01:CDS |
| AAACAACCTCTTCGCCGCGG+AGG | 0.648728 | 4:-78670998 | None:intergenic |
| GGAGAAGGCCGAGTGTGCGG+CGG | 0.649221 | 4:-78670974 | None:intergenic |
| CGAGAACGAGATTCATGTGG+CGG | 0.654892 | 4:-78670881 | None:intergenic |
| GGTCTCGGAGGAGCAAATTG+CGG | 0.656856 | 4:-78671335 | None:intergenic |
| GGTGGTCCTCCGAGACCAGG+TGG | 0.664434 | 4:+78671305 | MsG0480022927.01.T01:CDS |
| GGTCTCTGTCCATACTGAGG+AGG | 0.665455 | 4:-78671392 | None:intergenic |
| CCTCTCATCATCTGTCCAGG+AGG | 0.666388 | 4:-78671428 | None:intergenic |
| GGCGGACCACCTGGTCTCGG+AGG | 0.672885 | 4:-78671311 | None:intergenic |
| CCATATCCCGGTATGCCAGG+TGG | 0.677559 | 4:+78671287 | MsG0480022927.01.T01:CDS |
| CGCCGAGAACGAGATTCATG+TGG | 0.682544 | 4:-78670884 | None:intergenic |
| CCACCAGGATACGAAACCGG+TGG | 0.682553 | 4:-78671230 | None:intergenic |
| GGAGGACCACCAGGTCTCGG+AGG | 0.685219 | 4:-78671347 | None:intergenic |
| GCTTGAATAACTGTCGCCGG+AGG | 0.688958 | 4:-78671131 | None:intergenic |
| ATAGGTCTCTGTCCATACTG+AGG | 0.691639 | 4:-78671395 | None:intergenic |
| CCACCGGTTTCGTATCCTGG+TGG | 0.700251 | 4:+78671230 | MsG0480022927.01.T01:CDS |
| GGAGGCGGCATACCAAATTG+CGG | 0.711042 | 4:-78671374 | None:intergenic |
| GGATATGGCATCTGACCAGG+CGG | 0.715982 | 4:-78671272 | None:intergenic |
| CTCGGCCTTCTCCTCCTCCG+CGG | 0.716164 | 4:+78670984 | MsG0480022927.01.T01:CDS |
| AAAGGTAAGAAAACCACCGA+CGG | 0.721265 | 4:+78670939 | MsG0480022927.01.T01:CDS |
| ATGCGCGTAACAATTCAAGA+CGG | 0.746228 | 4:+78670825 | MsG0480022927.01.T01:CDS |
| TGGAAACAACCTCTTCGCCG+CGG | 0.747245 | 4:-78671001 | None:intergenic |
| ACAGGAACACCACTACCAGG+AGG | 0.753038 | 4:-78671503 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GTGGTTTTCTTACCTTTTAC+AGG | - | Chr4:78670936-78670955 | None:intergenic | 35.0% |
| ! | GTTTTCTTACCTTTTACAGG+TGG | - | Chr4:78670933-78670952 | None:intergenic | 35.0% |
| AAAGGTAAGAAAACCACCGA+CGG | + | Chr4:78670939-78670958 | MsG0480022927.01.T01:CDS | 40.0% | |
| ATGCGCGTAACAATTCAAGA+CGG | + | Chr4:78670825-78670844 | MsG0480022927.01.T01:CDS | 40.0% | |
| ! | GTTGTTTCCATGACTGTTGA+AGG | + | Chr4:78671014-78671033 | MsG0480022927.01.T01:CDS | 40.0% |
| ! | TGTTGTTGTTGCTGCTGATT+TGG | - | Chr4:78671563-78671582 | None:intergenic | 40.0% |
| ACAGTTATTCAAGCTCAGCC+TGG | + | Chr4:78671140-78671159 | MsG0480022927.01.T01:CDS | 45.0% | |
| AGCAGCAGCATTAACAGCTT+TGG | - | Chr4:78671066-78671085 | None:intergenic | 45.0% | |
| AGCTGTTAATGCTGCTGCTA+TGG | + | Chr4:78671067-78671086 | MsG0480022927.01.T01:CDS | 45.0% | |
| ATAGGTCTCTGTCCATACTG+AGG | - | Chr4:78671398-78671417 | None:intergenic | 45.0% | |
| CAGTATGGACAGAGACCTAT+GGG | + | Chr4:78671398-78671417 | MsG0480022927.01.T01:CDS | 45.0% | |
| CGCAAACTTCCACCTGTAAA+AGG | + | Chr4:78670921-78670940 | MsG0480022927.01.T01:CDS | 45.0% | |
| TCAACTCGTCGGAAAGTTCA+TGG | + | Chr4:78670851-78670870 | MsG0480022927.01.T01:CDS | 45.0% | |
| TCAGTATGGACAGAGACCTA+TGG | + | Chr4:78671397-78671416 | MsG0480022927.01.T01:CDS | 45.0% | |
| TGAGCTTGAATAACTGTCGC+CGG | - | Chr4:78671137-78671156 | None:intergenic | 45.0% | |
| !! | TGTTGTTGCTGCTGATTTGG+AGG | - | Chr4:78671560-78671579 | None:intergenic | 45.0% |
| AAGACAGGAACACCACTACC+AGG | - | Chr4:78671509-78671528 | None:intergenic | 50.0% | |
| AGGAGGACCTTCAACAGTCA+TGG | - | Chr4:78671024-78671043 | None:intergenic | 50.0% | |
| ATACCAAATTGCGGTGGAGG+AGG | - | Chr4:78671368-78671387 | None:intergenic | 50.0% | |
| ATTTGCGGCTGCATCATACC+AGG | - | Chr4:78671203-78671222 | None:intergenic | 50.0% | |
| CGAGAACGAGATTCATGTGG+CGG | - | Chr4:78670884-78670903 | None:intergenic | 50.0% | |
| CGCCACATGAATCTCGTTCT+CGG | + | Chr4:78670882-78670901 | MsG0480022927.01.T01:CDS | 50.0% | |
| GTTAATGCTGCTGCTATGGC+TGG | + | Chr4:78671071-78671090 | MsG0480022927.01.T01:CDS | 50.0% | |
| TTGGAGCGAGATTCTTCAGG+AGG | - | Chr4:78671047-78671066 | None:intergenic | 50.0% | |
| ! | GGTAGTGGTGTTCCTGTCTT+TGG | + | Chr4:78671509-78671528 | MsG0480022927.01.T01:CDS | 50.0% |
| !! | GCTTTGGAGCGAGATTCTTC+AGG | - | Chr4:78671050-78671069 | None:intergenic | 50.0% |
| !! | GTTGCTGCTGATTTGGAGGA+GGG | - | Chr4:78671556-78671575 | None:intergenic | 50.0% |
| !! | TGTTGCTGCTGATTTGGAGG+AGG | - | Chr4:78671557-78671576 | None:intergenic | 50.0% |
| !! | TTGCTGCTGATTTGGAGGAG+GGG | - | Chr4:78671555-78671574 | None:intergenic | 50.0% |
| ACAGGAACACCACTACCAGG+AGG | - | Chr4:78671506-78671525 | None:intergenic | 55.0% | |
| ATCATCTGTCCAGGAGGAGG+TGG | - | Chr4:78671425-78671444 | None:intergenic | 55.0% | |
| ATGCCATATCCCGGTATGCC+AGG | + | Chr4:78671284-78671303 | MsG0480022927.01.T01:CDS | 55.0% | |
| CAAGACGGTCGTCAACTCGT+CGG | + | Chr4:78670840-78670859 | MsG0480022927.01.T01:CDS | 55.0% | |
| CCTCCTCATCCTGGAATGCA+GGG | + | Chr4:78671455-78671474 | MsG0480022927.01.T01:CDS | 55.0% | |
| CCTCCTGGACAGATGATGAG+AGG | + | Chr4:78671428-78671447 | MsG0480022927.01.T01:CDS | 55.0% | |
| CCTCTCATCATCTGTCCAGG+AGG | - | Chr4:78671431-78671450 | None:intergenic | 55.0% | |
| CCTGGTCAGATGCCATATCC+CGG | + | Chr4:78671275-78671294 | MsG0480022927.01.T01:CDS | 55.0% | |
| CGAGATTCTTCAGGAGGAGG+AGG | - | Chr4:78671041-78671060 | None:intergenic | 55.0% | |
| CGCCGAGAACGAGATTCATG+TGG | - | Chr4:78670887-78670906 | None:intergenic | 55.0% | |
| CTCATCATCTGTCCAGGAGG+AGG | - | Chr4:78671428-78671447 | None:intergenic | 55.0% | |
| CTCCTCATCCTGGAATGCAG+GGG | + | Chr4:78671456-78671475 | MsG0480022927.01.T01:CDS | 55.0% | |
| CTCTGTCCATACTGAGGAGG+CGG | - | Chr4:78671392-78671411 | None:intergenic | 55.0% | |
| GAGATTCATGTGGCGGTCGA+AGG | - | Chr4:78670877-78670896 | None:intergenic | 55.0% | |
| GAGCGAGATTCTTCAGGAGG+AGG | - | Chr4:78671044-78671063 | None:intergenic | 55.0% | |
| GCTTGAATAACTGTCGCCGG+AGG | - | Chr4:78671134-78671153 | None:intergenic | 55.0% | |
| GGACCACCAGGATACGAAAC+CGG | - | Chr4:78671236-78671255 | None:intergenic | 55.0% | |
| GGAGGCGGCATACCAAATTG+CGG | - | Chr4:78671377-78671396 | None:intergenic | 55.0% | |
| GGATATGGCATCTGACCAGG+CGG | - | Chr4:78671275-78671294 | None:intergenic | 55.0% | |
| GGCATACCAAATTGCGGTGG+AGG | - | Chr4:78671371-78671390 | None:intergenic | 55.0% | |
| GGTCCTCTCATCATCTGTCC+AGG | - | Chr4:78671434-78671453 | None:intergenic | 55.0% | |
| GGTCTCGGAGGAGCAAATTG+CGG | - | Chr4:78671338-78671357 | None:intergenic | 55.0% | |
| GGTCTCTGTCCATACTGAGG+AGG | - | Chr4:78671395-78671414 | None:intergenic | 55.0% | |
| TCATCTGTCCAGGAGGAGGT+GGG | - | Chr4:78671424-78671443 | None:intergenic | 55.0% | |
| TCCTCCTCATCCTGGAATGC+AGG | + | Chr4:78671454-78671473 | MsG0480022927.01.T01:CDS | 55.0% | |
| TGAATAACTGTCGCCGGAGG+AGG | - | Chr4:78671131-78671150 | None:intergenic | 55.0% | |
| TGCATTCCAGGATGAGGAGG+AGG | - | Chr4:78671455-78671474 | None:intergenic | 55.0% | |
| TGGAAACAACCTCTTCGCCG+CGG | - | Chr4:78671004-78671023 | None:intergenic | 55.0% | |
| TTCGTATCCTGGTGGTCCTC+CGG | + | Chr4:78671238-78671257 | MsG0480022927.01.T01:CDS | 55.0% | |
| ! | CAATTTGCTCCTCCGAGACC+TGG | + | Chr4:78671338-78671357 | MsG0480022927.01.T01:CDS | 55.0% |
| ! | CTGGAATTGGTCGTGCTGCT+GGG | + | Chr4:78671096-78671115 | MsG0480022927.01.T01:CDS | 55.0% |
| ! | GCTATGGCTGGTCCTGGAAT+TGG | + | Chr4:78671083-78671102 | MsG0480022927.01.T01:CDS | 55.0% |
| !! | TGCTGCTGATTTGGAGGAGG+GGG | - | Chr4:78671554-78671573 | None:intergenic | 55.0% |
| !! | TGGGAGAGGTATTCCTCCTC+CGG | + | Chr4:78671115-78671134 | MsG0480022927.01.T01:CDS | 55.0% |
| AAACAACCTCTTCGCCGCGG+AGG | - | Chr4:78671001-78671020 | None:intergenic | 60.0% | |
| ACACCACTACCAGGAGGAGG+AGG | - | Chr4:78671500-78671519 | None:intergenic | 60.0% | |
| ACCGGTGGACGCGAGATTTG+CGG | - | Chr4:78671218-78671237 | None:intergenic | 60.0% | |
| AGAGGACCTCCTCCTCATCC+TGG | + | Chr4:78671446-78671465 | MsG0480022927.01.T01:CDS | 60.0% | |
| ATGCCTCCTCCTCCTGGTAG+TGG | + | Chr4:78671494-78671513 | MsG0480022927.01.T01:CDS | 60.0% | |
| CCACCAGGATACGAAACCGG+TGG | - | Chr4:78671233-78671252 | None:intergenic | 60.0% | |
| CCACCTGGCATACCGGGATA+TGG | - | Chr4:78671290-78671309 | None:intergenic | 60.0% | |
| CCAGCAGCACGACCAATTCC+AGG | - | Chr4:78671098-78671117 | None:intergenic | 60.0% | |
| CCATATCCCGGTATGCCAGG+TGG | + | Chr4:78671287-78671306 | MsG0480022927.01.T01:CDS | 60.0% | |
| CCCTGCATTCCAGGATGAGG+AGG | - | Chr4:78671458-78671477 | None:intergenic | 60.0% | |
| CCGGGATATGGCATCTGACC+AGG | - | Chr4:78671278-78671297 | None:intergenic | 60.0% | |
| CCTGGAATTGGTCGTGCTGC+TGG | + | Chr4:78671095-78671114 | MsG0480022927.01.T01:CDS | 60.0% | |
| CGAACAGGACCAGCAAGACC+AGG | - | Chr4:78671161-78671180 | None:intergenic | 60.0% | |
| CTCGGAGGAGCAAATTGCGG+TGG | - | Chr4:78671335-78671354 | None:intergenic | 60.0% | |
| GCTGGTCCTGTTCGTGGTGT+TGG | + | Chr4:78671167-78671186 | MsG0480022927.01.T01:CDS | 60.0% | |
| GGAACACCACTACCAGGAGG+AGG | - | Chr4:78671503-78671522 | None:intergenic | 60.0% | |
| GGACGAGGTGGACCAAAGAC+AGG | - | Chr4:78671524-78671543 | None:intergenic | 60.0% | |
| GGAGGAGCAAATTGCGGTGG+CGG | - | Chr4:78671332-78671351 | None:intergenic | 60.0% | |
| GGCGGCATACCAAATTGCGG+TGG | - | Chr4:78671374-78671393 | None:intergenic | 60.0% | |
| GGCTGCATCATACCAGGAGC+AGG | - | Chr4:78671197-78671216 | None:intergenic | 60.0% | |
| GGTATGCCGCCTCCTCAGTA+TGG | + | Chr4:78671383-78671402 | MsG0480022927.01.T01:CDS | 60.0% | |
| GGTCCACCAACACCACGAAC+AGG | - | Chr4:78671176-78671195 | None:intergenic | 60.0% | |
| GGTCCTCCTCCACCGCAATT+TGG | + | Chr4:78671362-78671381 | MsG0480022927.01.T01:CDS | 60.0% | |
| GGTCTTGCTGGTCCTGTTCG+TGG | + | Chr4:78671161-78671180 | MsG0480022927.01.T01:CDS | 60.0% | |
| GTCTTTGGTCCACCTCGTCC+CGG | + | Chr4:78671524-78671543 | MsG0480022927.01.T01:CDS | 60.0% | |
| TATGGCATCTGACCAGGCGG+TGG | - | Chr4:78671272-78671291 | None:intergenic | 60.0% | |
| TTTGCTCCTCCGAGACCTGG+TGG | + | Chr4:78671341-78671360 | MsG0480022927.01.T01:CDS | 60.0% | |
| ! | ATTGGTCGTGCTGCTGGGAG+AGG | + | Chr4:78671101-78671120 | MsG0480022927.01.T01:CDS | 60.0% |
| ! | ATTTGGAGGAGGGGGCATGC+CGG | - | Chr4:78671546-78671565 | None:intergenic | 60.0% |
| ! | GGTCCTGTTCGTGGTGTTGG+TGG | + | Chr4:78671170-78671189 | MsG0480022927.01.T01:CDS | 60.0% |
| !! | ACCAGGAGGAGGAGGCATTC+CGG | - | Chr4:78671492-78671511 | None:intergenic | 60.0% |
| !! | CAAGCTCAGCCTGGTCTTGC+TGG | + | Chr4:78671149-78671168 | MsG0480022927.01.T01:CDS | 60.0% |
| !! | CCACCGGTTTCGTATCCTGG+TGG | + | Chr4:78671230-78671249 | MsG0480022927.01.T01:CDS | 60.0% |
| !! | CGTCCACCGGTTTCGTATCC+TGG | + | Chr4:78671227-78671246 | MsG0480022927.01.T01:CDS | 60.0% |
| CGAGTGTGCGGCGGTCTTCA+CGG | - | Chr4:78670968-78670987 | None:intergenic | 65.0% | |
| CGGAGGACCACCTGGCATAC+CGG | - | Chr4:78671297-78671316 | None:intergenic | 65.0% | |
| CGTGAAGACCGCCGCACACT+CGG | + | Chr4:78670966-78670985 | MsG0480022927.01.T01:CDS | 65.0% | |
| GCCGCAAATCTCGCGTCCAC+CGG | + | Chr4:78671214-78671233 | MsG0480022927.01.T01:CDS | 65.0% | |
| GCGGTCTTCACGGTCACCGT+CGG | - | Chr4:78670958-78670977 | None:intergenic | 65.0% | |
| GGAGGACCACCTGGCATACC+GGG | - | Chr4:78671296-78671315 | None:intergenic | 65.0% | |
| GGAGGAGAAGGCCGAGTGTG+CGG | - | Chr4:78670980-78670999 | None:intergenic | 65.0% | |
| GGAGGAGGACCACCAGGTCT+CGG | - | Chr4:78671353-78671372 | None:intergenic | 65.0% | |
| GGCCCCTGCATTCCAGGATG+AGG | - | Chr4:78671461-78671480 | None:intergenic | 65.0% | |
| GTCTTCACGGTCACCGTCGG+TGG | - | Chr4:78670955-78670974 | None:intergenic | 65.0% | |
| ! | GCTGCTGCTATGGCTGGTCC+TGG | + | Chr4:78671077-78671096 | MsG0480022927.01.T01:CDS | 65.0% |
| ! | TTTGGAGGAGGGGGCATGCC+GGG | - | Chr4:78671545-78671564 | None:intergenic | 65.0% |
| !! | AATTGCGGTGGCGGACCACC+TGG | - | Chr4:78671323-78671342 | None:intergenic | 65.0% |
| !! | CCAGGAGGAGGAGGCATTCC+GGG | - | Chr4:78671491-78671510 | None:intergenic | 65.0% |
| !! | GGTGTTGGTGGACCTGCTCC+TGG | + | Chr4:78671182-78671201 | MsG0480022927.01.T01:CDS | 65.0% |
| CAACCTCTTCGCCGCGGAGG+AGG | - | Chr4:78670998-78671017 | None:intergenic | 70.0% | |
| CCAGGAGGAGGTGGGCCCAT+AGG | - | Chr4:78671416-78671435 | None:intergenic | 70.0% | |
| CCAGGCGGTGGACGCATCAC+CGG | - | Chr4:78671260-78671279 | None:intergenic | 70.0% | |
| CCAGGTGGTCCTCCGAGACC+AGG | + | Chr4:78671302-78671321 | MsG0480022927.01.T01:CDS | 70.0% | |
| CCCGGAATGCCTCCTCCTCC+TGG | + | Chr4:78671488-78671507 | MsG0480022927.01.T01:CDS | 70.0% | |
| CCTATGGGCCCACCTCCTCC+TGG | + | Chr4:78671413-78671432 | MsG0480022927.01.T01:CDS | 70.0% | |
| CCTGGTCTCGGAGGACCACC+TGG | - | Chr4:78671305-78671324 | None:intergenic | 70.0% | |
| CGCATCACCGGAGGACCACC+AGG | - | Chr4:78671248-78671267 | None:intergenic | 70.0% | |
| CTCGGCCTTCTCCTCCTCCG+CGG | + | Chr4:78670984-78671003 | MsG0480022927.01.T01:CDS | 70.0% | |
| CTTCGCCGCGGAGGAGGAGA+AGG | - | Chr4:78670992-78671011 | None:intergenic | 70.0% | |
| GGAGAAGGCCGAGTGTGCGG+CGG | - | Chr4:78670977-78670996 | None:intergenic | 70.0% | |
| GGAGGACCACCAGGTCTCGG+AGG | - | Chr4:78671350-78671369 | None:intergenic | 70.0% | |
| GGTGGTCCTCCGAGACCAGG+TGG | + | Chr4:78671305-78671324 | MsG0480022927.01.T01:CDS | 70.0% | |
| TCTCCTCCTCCGCGGCGAAG+AGG | + | Chr4:78670992-78671011 | MsG0480022927.01.T01:CDS | 70.0% | |
| TGCGGTGGAGGAGGACCACC+AGG | - | Chr4:78671359-78671378 | None:intergenic | 70.0% | |
| !! | GGAGGAGGCATTCCGGGACG+AGG | - | Chr4:78671485-78671504 | None:intergenic | 70.0% |
| !! | GGAGGCATTCCGGGACGAGG+CGG | - | Chr4:78671482-78671501 | None:intergenic | 70.0% |
| !! | GGTGGCGGACCACCTGGTCT+CGG | - | Chr4:78671317-78671336 | None:intergenic | 70.0% |
| ATGCAGGGGCCGCCTCGTCC+CGG | + | Chr4:78671470-78671489 | MsG0480022927.01.T01:CDS | 75.0% | |
| CCGGTGATGCGTCCACCGCC+TGG | + | Chr4:78671257-78671276 | MsG0480022927.01.T01:CDS | 75.0% | |
| CGAGGCGGCCCCTGCATTCC+AGG | - | Chr4:78671467-78671486 | None:intergenic | 75.0% | |
| GGCGGACCACCTGGTCTCGG+AGG | - | Chr4:78671314-78671333 | None:intergenic | 75.0% | |
| GGCGGTGGACGCATCACCGG+AGG | - | Chr4:78671257-78671276 | None:intergenic | 75.0% | |
| !! | GGAGGGGGCATGCCGGGACG+AGG | - | Chr4:78671539-78671558 | None:intergenic | 80.0% |
| !! | GGGGGCATGCCGGGACGAGG+TGG | - | Chr4:78671536-78671555 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 78670825 | 78671586 | 78670825 | ID=MsG0480022927.01;Name=MsG0480022927.01 |
| Chr4 | mRNA | 78670825 | 78671586 | 78670825 | ID=MsG0480022927.01.T01;Parent=MsG0480022927.01;Name=MsG0480022927.01.T01;_AED=0.40;_eAED=0.40;_QI=0|-1|0|1|-1|1|1|0|253 |
| Chr4 | exon | 78670825 | 78671586 | 78670825 | ID=MsG0480022927.01.T01:exon:19684;Parent=MsG0480022927.01.T01 |
| Chr4 | CDS | 78670825 | 78671586 | 78670825 | ID=MsG0480022927.01.T01:cds;Parent=MsG0480022927.01.T01 |
| Gene Sequence |
| Protein sequence |
