AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027361.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027361.01.T01 MTR_5g055650 99.225 129 1 0 1 129 1 129 4.79e-87 249
MsG0580027361.01.T01 MTR_3g462870 84.211 38 6 0 92 129 92 129 7.21e-13 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027361.01.T01 AT1G29990 86.047 129 18 0 1 129 1 129 1.51e-77 225

Find 37 sgRNAs with CRISPR-Local

Find 410 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTCACAAATTCGATTTC+TGG 0.151221 5:-59108342 None:intergenic
TTAGCACTGTCTCATTATTA+TGG 0.233713 5:+59114003 MsG0580027361.01.T01:three_prime_UTR
TGATGCCACGGTTCAAGATT+TGG 0.316433 5:+59112791 MsG0580027361.01.T01:CDS
TGTACTTGTTAAGCAAGATT+TGG 0.330090 5:+59109110 MsG0580027361.01.T01:CDS
ATCTTTCCACCTTCTTTCTT+CGG 0.331861 5:-59113915 None:intergenic
ACAAAAGATGCAATCTCTTC+AGG 0.356299 5:+59113778 MsG0580027361.01.T01:CDS
TAGAGATCTTCAACGCGAAT+TGG 0.368259 5:+59108411 MsG0580027361.01.T01:CDS
GCAAATGTTTACAAGTTGAT+TGG 0.380956 5:+59109084 MsG0580027361.01.T01:CDS
CGATCTCAACAAGCTTCAAA+AGG 0.400711 5:+59108447 MsG0580027361.01.T01:CDS
AACTAGAGTGGTTTCTGTCT+TGG 0.406531 5:-59113943 None:intergenic
CAAACAGACAAACTTGTAGA+TGG 0.420768 5:+59113971 MsG0580027361.01.T01:three_prime_UTR
AAGATGCAATCTCTTCAGGC+TGG 0.480196 5:+59113782 MsG0580027361.01.T01:CDS
ACTGTAACTTGACCGTTCAT+AGG 0.485267 5:+59113843 MsG0580027361.01.T01:three_prime_UTR
CAATCTCTTCAGGCTGGGAA+AGG 0.495242 5:+59113788 MsG0580027361.01.T01:CDS
AATCTCTTCAGGCTGGGAAA+GGG 0.515494 5:+59113789 MsG0580027361.01.T01:CDS
AAATCTTGCTTAACAAGTAC+AGG 0.520028 5:-59109108 None:intergenic
TCTCTTGCGAACATTTGCAT+TGG 0.528626 5:-59109139 None:intergenic
GATCTCAACAAGCTTCAAAA+GGG 0.534109 5:+59108448 MsG0580027361.01.T01:CDS
TTCGGCATCAAAAGTCACAT+TGG 0.542570 5:-59113897 None:intergenic
GCAGAATAGCAAGAAAGAAA+CGG 0.544496 5:+59112821 MsG0580027361.01.T01:CDS
CTCTTCCAAATCTTGAACCG+TGG 0.545459 5:-59112796 None:intergenic
TTACAGTAAACAAACAATCA+AGG 0.551424 5:-59113827 None:intergenic
CGAAAATGAGCTCGTTCTCA+AGG 0.563976 5:+59108623 MsG0580027361.01.T01:CDS
CTGTTTGAGCAAAACTAGAG+TGG 0.565158 5:-59113955 None:intergenic
AGATGCAATCTCTTCAGGCT+GGG 0.569375 5:+59113783 MsG0580027361.01.T01:CDS
CAGGAAGCGTCTTGATGCCA+CGG 0.578703 5:+59112779 MsG0580027361.01.T01:intron
TGTTAAGCAAGATTTGGCTG+AGG 0.593363 5:+59109116 MsG0580027361.01.T01:CDS
GCGTTGAAGATCTCTAATGT+TGG 0.594934 5:-59108404 None:intergenic
AATCGAATTTGTGAAAGCAA+AGG 0.600362 5:+59108347 MsG0580027361.01.T01:five_prime_UTR
AAGAAGTACACTATTCAACT+TGG 0.603063 5:+59108600 MsG0580027361.01.T01:CDS
GTGAAAGCAAAGGAAGGAGG+AGG 0.627755 5:+59108357 MsG0580027361.01.T01:five_prime_UTR
TCTTCAGGCTGGGAAAGGGA+AGG 0.633958 5:+59113793 MsG0580027361.01.T01:CDS
TTGATGCCGAAGAAAGAAGG+TGG 0.648746 5:+59113909 MsG0580027361.01.T01:three_prime_UTR
GAATTTGTGAAAGCAAAGGA+AGG 0.649479 5:+59108351 MsG0580027361.01.T01:five_prime_UTR
GTAACTTGACCGTTCATAGG+TGG 0.669511 5:+59113846 MsG0580027361.01.T01:three_prime_UTR
TTTGTGAAAGCAAAGGAAGG+AGG 0.670673 5:+59108354 MsG0580027361.01.T01:five_prime_UTR
ACTCATTCACCACCTATGAA+CGG 0.679282 5:-59113855 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTTATTCATAGATAAAA+GGG + Chr5:59109466-59109485 MsG0580027361.01.T01:intron 10.0%
!! TTAAAAATTATATTCTATCT+TGG + Chr5:59113563-59113582 MsG0580027361.01.T01:intron 10.0%
!!! AATAAAATTCTAAAACAAAA+TGG - Chr5:59111525-59111544 None:intergenic 10.0%
!! AAATAATCACTTCAAAATAT+TGG + Chr5:59109350-59109369 MsG0580027361.01.T01:intron 15.0%
!! AATAATTACAGAATAACATT+TGG + Chr5:59112899-59112918 MsG0580027361.01.T01:intron 15.0%
!! ATAAGATAATATGATGAATA+TGG + Chr5:59110353-59110372 MsG0580027361.01.T01:intron 15.0%
!! GTAATTTATTCATAGATAAA+AGG + Chr5:59109465-59109484 MsG0580027361.01.T01:intron 15.0%
!! TAAAATTATGTATTAGCAAA+AGG + Chr5:59110047-59110066 MsG0580027361.01.T01:intron 15.0%
!! TATGTGTGTTATAATAAATA+AGG + Chr5:59112525-59112544 MsG0580027361.01.T01:intron 15.0%
!! TTGTAAGTTTGTAATAAATT+GGG + Chr5:59112364-59112383 MsG0580027361.01.T01:intron 15.0%
!! TTTGTAAGTTTGTAATAAAT+TGG + Chr5:59112363-59112382 MsG0580027361.01.T01:intron 15.0%
!!! ATTTTGTATTCTAAAATATC+AGG + Chr5:59111954-59111973 MsG0580027361.01.T01:intron 15.0%
!!! CAAACTTTTTTTTTAAATCT+CGG - Chr5:59108819-59108838 None:intergenic 15.0%
!!! CTATTTTTTCGTTATTATTT+TGG + Chr5:59109431-59109450 MsG0580027361.01.T01:intron 15.0%
!!! TCTAAAATGACAAATAATTT+GGG - Chr5:59113420-59113439 None:intergenic 15.0%
!!! TGTATTTAATTTTTCTTAAG+AGG + Chr5:59113593-59113612 MsG0580027361.01.T01:intron 15.0%
!!! TTCTAAAATGACAAATAATT+TGG - Chr5:59113421-59113440 None:intergenic 15.0%
!!! TTTTATTTTCTTGATTTTGA+AGG + Chr5:59109204-59109223 MsG0580027361.01.T01:intron 15.0%
!!! TTTTGTATTCTAAAATATCA+GGG + Chr5:59111955-59111974 MsG0580027361.01.T01:intron 15.0%
!! AAAATGGAAATAAACTCTTT+AGG - Chr5:59109548-59109567 None:intergenic 20.0%
!! AATGAAATAGAATAGTGAAA+AGG - Chr5:59108477-59108496 None:intergenic 20.0%
!! ATAATACATATTGTTCGATA+TGG + Chr5:59111495-59111514 MsG0580027361.01.T01:intron 20.0%
!! ATCATCATCATTATCTTATA+TGG + Chr5:59112745-59112764 MsG0580027361.01.T01:intron 20.0%
!! ATCCTGAGATAAATATATTT+AGG - Chr5:59111557-59111576 None:intergenic 20.0%
!! ATGTTTAATTACATCAGTAT+TGG + Chr5:59111924-59111943 MsG0580027361.01.T01:intron 20.0%
!! CAAAAACATAGTATATTTCA+AGG - Chr5:59114046-59114065 None:intergenic 20.0%
!! TAACATAACAAAAAATAGCA+AGG + Chr5:59110945-59110964 MsG0580027361.01.T01:intron 20.0%
!! TACAAAAATAAGGATGAAAA+TGG + Chr5:59109796-59109815 MsG0580027361.01.T01:intron 20.0%
!! TACCTAAATATATTTATCTC+AGG + Chr5:59111552-59111571 MsG0580027361.01.T01:intron 20.0%
!!! ATGTAACATTTTTTACTTAG+CGG - Chr5:59112265-59112284 None:intergenic 20.0%
!!! GAATAGTGGTATATTAATTT+TGG + Chr5:59110379-59110398 MsG0580027361.01.T01:intron 20.0%
!!! GACTTTTAAATTATTTCTCA+TGG + Chr5:59112874-59112893 MsG0580027361.01.T01:intron 20.0%
!!! TATTATTTTGGATGAAGAAT+AGG + Chr5:59109443-59109462 MsG0580027361.01.T01:intron 20.0%
!!! TGATTAAACATTTTAAGAAG+TGG + Chr5:59111340-59111359 MsG0580027361.01.T01:intron 20.0%
!!! TTAGAGAAATATGTTGTTTA+AGG + Chr5:59109681-59109700 MsG0580027361.01.T01:intron 20.0%
!!! TTTGTATTTCAAGTTCTTAT+TGG + Chr5:59111463-59111482 MsG0580027361.01.T01:intron 20.0%
!!! TTTTTTTTTTCAATAGGAGT+TGG + Chr5:59109044-59109063 MsG0580027361.01.T01:intron 20.0%
! AAAAACTAGTTCATCGTTAT+AGG - Chr5:59109581-59109600 None:intergenic 25.0%
! AAAGTAAATATGATAACCTG+TGG - Chr5:59109259-59109278 None:intergenic 25.0%
! AACAATGAATTTGACTATCT+TGG + Chr5:59109519-59109538 MsG0580027361.01.T01:intron 25.0%
! AAGATTAGATACACTTCTAA+CGG + Chr5:59112634-59112653 MsG0580027361.01.T01:intron 25.0%
! AAGTTAAGGGAAAAATATGT+TGG + Chr5:59112387-59112406 MsG0580027361.01.T01:intron 25.0%
! AATAAAACAGTATCACAATG+AGG - Chr5:59112223-59112242 None:intergenic 25.0%
! AATTCATTGTTTGTAAGTAC+AGG - Chr5:59109510-59109529 None:intergenic 25.0%
! ATAAAACAGTATCACAATGA+GGG - Chr5:59112222-59112241 None:intergenic 25.0%
! ATAACCCTAAAACACATAAA+AGG - Chr5:59108652-59108671 None:intergenic 25.0%
! ATCAACAAAAATCAAGTCTA+TGG - Chr5:59109638-59109657 None:intergenic 25.0%
! CTGTAGTAGATAAATAACTT+TGG + Chr5:59110149-59110168 MsG0580027361.01.T01:intron 25.0%
! GAAATACAAAGAGAGTAAAT+TGG - Chr5:59111453-59111472 None:intergenic 25.0%
! GATAATATGATGAATATGGA+TGG + Chr5:59110357-59110376 MsG0580027361.01.T01:intron 25.0%
! GTAATAAATTGGGAAGTTAA+GGG + Chr5:59112374-59112393 MsG0580027361.01.T01:intron 25.0%
! TAACCCTAAAACACATAAAA+GGG - Chr5:59108651-59108670 None:intergenic 25.0%
! TAGTTAAGTATGTGTATAAG+AGG - Chr5:59110746-59110765 None:intergenic 25.0%
! TGTAATAAATTGGGAAGTTA+AGG + Chr5:59112373-59112392 MsG0580027361.01.T01:intron 25.0%
! TTACAGTAAACAAACAATCA+AGG - Chr5:59113830-59113849 None:intergenic 25.0%
! TTATACACATACTTAACTAG+TGG + Chr5:59110747-59110766 MsG0580027361.01.T01:intron 25.0%
! TTCGTTGAGATACAAATAAA+CGG - Chr5:59113483-59113502 None:intergenic 25.0%
!! AAAAAGATGAACGATTTTGA+AGG - Chr5:59108524-59108543 None:intergenic 25.0%
!! AAAATATGTTGGTCAGTTTT+TGG + Chr5:59112398-59112417 MsG0580027361.01.T01:intron 25.0%
!! AGAAATATGTTGTTTAAGGA+TGG + Chr5:59109685-59109704 MsG0580027361.01.T01:intron 25.0%
!! AGAATCATTTGGTTAGTTAT+AGG - Chr5:59111054-59111073 None:intergenic 25.0%
!! CAAAAATCAAACCATCATTT+TGG - Chr5:59108985-59109004 None:intergenic 25.0%
!! CTTCATTTTAGATCTTGTTA+TGG + Chr5:59112676-59112695 MsG0580027361.01.T01:intron 25.0%
!! GAAATATGTTGTTTAAGGAT+GGG + Chr5:59109686-59109705 MsG0580027361.01.T01:intron 25.0%
!! TTGATTTTCGAATGTGTATT+CGG + Chr5:59108863-59108882 MsG0580027361.01.T01:intron 25.0%
!!! AACATGAAAGTGTTGAAATT+TGG - Chr5:59111909-59111928 None:intergenic 25.0%
!!! AAGAACTTTTTCTTCTCTAT+AGG - Chr5:59111030-59111049 None:intergenic 25.0%
!!! ACATGAAAGTGTTGAAATTT+GGG - Chr5:59111908-59111927 None:intergenic 25.0%
!!! TCATCCTTATTTTTGTACAA+TGG - Chr5:59109793-59109812 None:intergenic 25.0%
!!! TGATACTGTTTTATTTTTGC+TGG + Chr5:59112228-59112247 MsG0580027361.01.T01:intron 25.0%
!!! TTTTTTTAAATCTCGGTATC+CGG - Chr5:59108812-59108831 None:intergenic 25.0%
AAATCTTGCTTAACAAGTAC+AGG - Chr5:59109111-59109130 None:intergenic 30.0%
AACCACTTGGAATGTTTATT+AGG + Chr5:59109305-59109324 MsG0580027361.01.T01:intron 30.0%
AATCGAATTTGTGAAAGCAA+AGG + Chr5:59108347-59108366 MsG0580027361.01.T01:five_prime_UTR 30.0%
AATGCACAATAACTGTTCTA+AGG - Chr5:59112316-59112335 None:intergenic 30.0%
ACAAAGAAACAAAGATCAAG+AGG - Chr5:59111667-59111686 None:intergenic 30.0%
ACCACTTGGAATGTTTATTA+GGG + Chr5:59109306-59109325 MsG0580027361.01.T01:intron 30.0%
AGAGGAGAACTCTAATATAA+GGG - Chr5:59111106-59111125 None:intergenic 30.0%
AGCAGACGATTAAACTTTAT+CGG + Chr5:59110095-59110114 MsG0580027361.01.T01:intron 30.0%
AGGTATCTTGAAGAATCATT+TGG - Chr5:59111065-59111084 None:intergenic 30.0%
ATATTTATCTCAGGATGTCT+TGG + Chr5:59111561-59111580 MsG0580027361.01.T01:intron 30.0%
ATCAAGCAAAATAATGCAGA+AGG - Chr5:59113082-59113101 None:intergenic 30.0%
ATGATTGAAAAGTAACCACT+TGG + Chr5:59109292-59109311 MsG0580027361.01.T01:intron 30.0%
CAATTGAAAATGGAAAGAAC+AGG - Chr5:59110296-59110315 None:intergenic 30.0%
CATGGCTATACAATTGAAAA+TGG - Chr5:59110306-59110325 None:intergenic 30.0%
CCAAATTAGCATGTCTTTAT+AGG + Chr5:59113668-59113687 MsG0580027361.01.T01:intron 30.0%
CCTATAAAGACATGCTAATT+TGG - Chr5:59113671-59113690 None:intergenic 30.0%
CTTGAGAAGAGTTTATAAAG+AGG + Chr5:59111836-59111855 MsG0580027361.01.T01:intron 30.0%
GCTTCCATTGTACAAAAATA+AGG + Chr5:59109786-59109805 MsG0580027361.01.T01:intron 30.0%
GGACAAACAAAATATTCTAG+AGG - Chr5:59113399-59113418 None:intergenic 30.0%
TAAAACAGTATCACAATGAG+GGG - Chr5:59112221-59112240 None:intergenic 30.0%
TAAGTATGTGTATAAGAGGA+GGG - Chr5:59110742-59110761 None:intergenic 30.0%
TACAAAGAGAGTAAATTGGT+AGG - Chr5:59111449-59111468 None:intergenic 30.0%
TACATTTGATGAGCTTACAA+TGG - Chr5:59109881-59109900 None:intergenic 30.0%
TATAGGCTGCAAGAAAAAAA+TGG - Chr5:59109564-59109583 None:intergenic 30.0%
TCGTTGAGATACAAATAAAC+GGG - Chr5:59113482-59113501 None:intergenic 30.0%
TCTACCAAACATACATTTAG+AGG - Chr5:59112947-59112966 None:intergenic 30.0%
TCTTGTGTAGAAACACAATA+AGG - Chr5:59113246-59113265 None:intergenic 30.0%
TGTCTAATCACATGCATTTA+CGG - Chr5:59110234-59110253 None:intergenic 30.0%
TTAAGTATGTGTATAAGAGG+AGG - Chr5:59110743-59110762 None:intergenic 30.0%
TTACATTTAGAGACCAAAAC+AGG + Chr5:59112279-59112298 MsG0580027361.01.T01:intron 30.0%
TTAGCACTGTCTCATTATTA+TGG + Chr5:59114003-59114022 MsG0580027361.01.T01:three_prime_UTR 30.0%
TTCTACTTAACTACTCTACT+TGG + Chr5:59113518-59113537 MsG0580027361.01.T01:intron 30.0%
TTCTTTGTGAAACTTTCTGT+TGG + Chr5:59111679-59111698 MsG0580027361.01.T01:intron 30.0%
TTGAAAACCTTCCACATATT+GGG + Chr5:59111191-59111210 MsG0580027361.01.T01:intron 30.0%
TTGGTAGAACAACATTTAGT+GGG + Chr5:59112959-59112978 MsG0580027361.01.T01:intron 30.0%
TTTATCTACTACAGTCTACA+AGG - Chr5:59110143-59110162 None:intergenic 30.0%
TTTGAAAACCTTCCACATAT+TGG + Chr5:59111190-59111209 MsG0580027361.01.T01:intron 30.0%
TTTGGTAGAACAACATTTAG+TGG + Chr5:59112958-59112977 MsG0580027361.01.T01:intron 30.0%
! AAGAAGTACACTATTCAACT+TGG + Chr5:59108600-59108619 MsG0580027361.01.T01:CDS 30.0%
! AGAACATAGAAGTGTAGAAA+AGG + Chr5:59113144-59113163 MsG0580027361.01.T01:intron 30.0%
! ATAACTTTGGCTAGTTAGTT+TGG + Chr5:59110162-59110181 MsG0580027361.01.T01:intron 30.0%
! ATAATCAGATTGACTCTGAT+AGG - Chr5:59110773-59110792 None:intergenic 30.0%
! ATTAGCAAAAGGTGTATGTT+AGG + Chr5:59110058-59110077 MsG0580027361.01.T01:intron 30.0%
! CTACACAAGATATTGTTTTC+AGG + Chr5:59113256-59113275 MsG0580027361.01.T01:intron 30.0%
! GAACATAGAAGTGTAGAAAA+GGG + Chr5:59113145-59113164 MsG0580027361.01.T01:intron 30.0%
! GTACCCTTTTATGTGTTTTA+GGG + Chr5:59108645-59108664 MsG0580027361.01.T01:intron 30.0%
! TGTACTTGTTAAGCAAGATT+TGG + Chr5:59109110-59109129 MsG0580027361.01.T01:CDS 30.0%
! TTTGGAGTTATTAGGAAATG+AGG - Chr5:59110528-59110547 None:intergenic 30.0%
!! CATGAAAGTGTTGAAATTTG+GGG - Chr5:59111907-59111926 None:intergenic 30.0%
!! CTAAGTTTCACTGATTGTTT+TGG + Chr5:59109005-59109024 MsG0580027361.01.T01:intron 30.0%
!! CTCATATTATGTGTCGTTTA+AGG - Chr5:59113632-59113651 None:intergenic 30.0%
!! GCAAATGTTTACAAGTTGAT+TGG + Chr5:59109084-59109103 MsG0580027361.01.T01:CDS 30.0%
!! TGAACGATTTTGAAGGAATT+AGG - Chr5:59108517-59108536 None:intergenic 30.0%
!! TTTTAAGAAGTGGAGAGTTT+AGG + Chr5:59111350-59111369 MsG0580027361.01.T01:intron 30.0%
!! TTTTACCAAGCTTGTTCTTA+AGG + Chr5:59108686-59108705 MsG0580027361.01.T01:intron 30.0%
!! TTTTGGTTAAGGAATTGGAA+GGG + Chr5:59112415-59112434 MsG0580027361.01.T01:intron 30.0%
!!! TCAGTTTTTGGTTAAGGAAT+TGG + Chr5:59112410-59112429 MsG0580027361.01.T01:intron 30.0%
!!! TTTTTGGTTAAGGAATTGGA+AGG + Chr5:59112414-59112433 MsG0580027361.01.T01:intron 30.0%
AAAGGAAGAGAGTAAAGAGA+AGG + Chr5:59111295-59111314 MsG0580027361.01.T01:intron 35.0%
AAGGAAGAGAGTAAAGAGAA+GGG + Chr5:59111296-59111315 MsG0580027361.01.T01:intron 35.0%
AAGGATTTGAGGATCATGAT+TGG - Chr5:59110605-59110624 None:intergenic 35.0%
AAGTATGTGTATAAGAGGAG+GGG - Chr5:59110741-59110760 None:intergenic 35.0%
AATAATCTCCTTGGAGGAAA+TGG + Chr5:59110428-59110447 MsG0580027361.01.T01:intron 35.0%
ACAAAAGATGCAATCTCTTC+AGG + Chr5:59113778-59113797 MsG0580027361.01.T01:CDS 35.0%
ACTGTCTTCATCTTTCGTAT+AGG + Chr5:59110021-59110040 MsG0580027361.01.T01:intron 35.0%
AGGATAACAAGGATAGATGT+TGG - Chr5:59112197-59112216 None:intergenic 35.0%
ATCTTTCCACCTTCTTTCTT+CGG - Chr5:59113918-59113937 None:intergenic 35.0%
ATGCATGTGATTAGACATAC+TGG + Chr5:59110237-59110256 MsG0580027361.01.T01:intron 35.0%
ATTTAGTCCCAAGGATAGAT+AGG + Chr5:59111810-59111829 MsG0580027361.01.T01:intron 35.0%
CAAACAGACAAACTTGTAGA+TGG + Chr5:59113971-59113990 MsG0580027361.01.T01:three_prime_UTR 35.0%
CAACATAAACCACACTAACA+GGG - Chr5:59111231-59111250 None:intergenic 35.0%
CAAGCTTTCAATACTTGGAA+GGG + Chr5:59112448-59112467 MsG0580027361.01.T01:intron 35.0%
CAAGGAAAATGCTGTAAAGA+AGG + Chr5:59110963-59110982 MsG0580027361.01.T01:intron 35.0%
CAGAGGAGAACTCTAATATA+AGG - Chr5:59111107-59111126 None:intergenic 35.0%
CAGTGAAGTAATACAATGGA+TGG + Chr5:59110403-59110422 MsG0580027361.01.T01:intron 35.0%
CCACTTGGAATGTTTATTAG+GGG + Chr5:59109307-59109326 MsG0580027361.01.T01:intron 35.0%
CGTTGAGATACAAATAAACG+GGG - Chr5:59113481-59113500 None:intergenic 35.0%
CTAAAAAACGAGGGTTGTTT+AGG + Chr5:59112113-59112132 MsG0580027361.01.T01:intron 35.0%
CTGTTAGTGTGGTTTATGTT+GGG + Chr5:59111230-59111249 MsG0580027361.01.T01:intron 35.0%
CTTTCTATGCTTCACAATAG+CGG - Chr5:59109912-59109931 None:intergenic 35.0%
GAATCCAATAAGTAGAGAGA+AGG - Chr5:59110571-59110590 None:intergenic 35.0%
GAATGTGTATTCGGTTATTC+AGG + Chr5:59108922-59108941 MsG0580027361.01.T01:intron 35.0%
GAATTTGTGAAAGCAAAGGA+AGG + Chr5:59108351-59108370 MsG0580027361.01.T01:five_prime_UTR 35.0%
GACTACCATATATAAGACAC+AGG - Chr5:59112986-59113005 None:intergenic 35.0%
GAGAAGAGTTTATAAAGAGG+AGG + Chr5:59111839-59111858 MsG0580027361.01.T01:intron 35.0%
GAGTTTAGGTCTCTTGAAAA+TGG + Chr5:59111364-59111383 MsG0580027361.01.T01:intron 35.0%
GATCTCAACAAGCTTCAAAA+GGG + Chr5:59108448-59108467 MsG0580027361.01.T01:CDS 35.0%
GATGAATATGGATGGAATAG+TGG + Chr5:59110365-59110384 MsG0580027361.01.T01:intron 35.0%
GATTCCAAGCTTTCAATACT+TGG + Chr5:59112443-59112462 MsG0580027361.01.T01:intron 35.0%
GATTTGCACAAAGCACAAAT+AGG - Chr5:59112068-59112087 None:intergenic 35.0%
GCAGAATAGCAAGAAAGAAA+CGG + Chr5:59112821-59112840 MsG0580027361.01.T01:CDS 35.0%
GCTTTCACAAATTCGATTTC+TGG - Chr5:59108345-59108364 None:intergenic 35.0%
GGTCTGCTAAATAAAGATAC+AGG + Chr5:59110116-59110135 MsG0580027361.01.T01:intron 35.0%
GTTGAGATACAAATAAACGG+GGG - Chr5:59113480-59113499 None:intergenic 35.0%
TACATTTCAGCTGAACTGTA+AGG + Chr5:59109168-59109187 MsG0580027361.01.T01:intron 35.0%
TACGAAAGATGAAGACAGTA+AGG - Chr5:59110020-59110039 None:intergenic 35.0%
TAGCTATACATTTGCATACG+TGG + Chr5:59109385-59109404 MsG0580027361.01.T01:intron 35.0%
TAGGCCTCTAAATGTATGTT+TGG + Chr5:59112940-59112959 MsG0580027361.01.T01:intron 35.0%
TATGACTAGAGCCTATAACA+AGG + Chr5:59109977-59109996 MsG0580027361.01.T01:intron 35.0%
TCAAAAGAAGTAGGAATGAG+CGG - Chr5:59111175-59111194 None:intergenic 35.0%
TGATTTGATTCATCTTCCAC+AGG + Chr5:59109240-59109259 MsG0580027361.01.T01:intron 35.0%
TGCATGTGATTAGACATACT+GGG + Chr5:59110238-59110257 MsG0580027361.01.T01:intron 35.0%
TGGACAGTGAAGTAATACAA+TGG + Chr5:59110399-59110418 MsG0580027361.01.T01:intron 35.0%
TTATATGGTCTTTGTGTGTC+AGG + Chr5:59112760-59112779 MsG0580027361.01.T01:intron 35.0%
TTCAAAAAAAATCACGCACC+AGG - Chr5:59113045-59113064 None:intergenic 35.0%
TTGAGATACAAATAAACGGG+GGG - Chr5:59113479-59113498 None:intergenic 35.0%
TTGAGTACATCATACTCTCA+TGG - Chr5:59110324-59110343 None:intergenic 35.0%
TTGTGAAGCATAGAAAGAGT+CGG + Chr5:59109915-59109934 MsG0580027361.01.T01:intron 35.0%
! ATAGTTTTCCATTTCCTCCA+AGG - Chr5:59110439-59110458 None:intergenic 35.0%
! CACATTTAGGACCAAAATGA+TGG + Chr5:59108971-59108990 MsG0580027361.01.T01:intron 35.0%
! CTTGTCAAATTCTTTTGACC+AGG + Chr5:59112158-59112177 MsG0580027361.01.T01:intron 35.0%
! GGAAGGTTTTCAAAAGAAGT+AGG - Chr5:59111184-59111203 None:intergenic 35.0%
! GGTACCCTTTTATGTGTTTT+AGG + Chr5:59108644-59108663 MsG0580027361.01.T01:intron 35.0%
! TTTTGGTCCTAAATGTGTGA+TGG - Chr5:59108968-59108987 None:intergenic 35.0%
!! GTTCTTAAGGTACCCTTTTA+GGG + Chr5:59108699-59108718 MsG0580027361.01.T01:intron 35.0%
!! TGTTCTTAAGGTACCCTTTT+AGG + Chr5:59108698-59108717 MsG0580027361.01.T01:intron 35.0%
!!! TGTTGGTCAGTTTTTGGTTA+AGG + Chr5:59112404-59112423 MsG0580027361.01.T01:intron 35.0%
AAACCCAAAGGTCGCAATTT+AGG - Chr5:59111739-59111758 None:intergenic 40.0%
AAACCGTAAGATTTGCGAGA+AGG - Chr5:59110900-59110919 None:intergenic 40.0%
AAACTTCCAAATCAGCAGAC+TGG - Chr5:59111633-59111652 None:intergenic 40.0%
AACCGTAAGATTTGCGAGAA+GGG - Chr5:59110899-59110918 None:intergenic 40.0%
AACTAGAGTGGTTTCTGTCT+TGG - Chr5:59113946-59113965 None:intergenic 40.0%
AAGCAGAGGATTAAACCTTC+TGG + Chr5:59111265-59111284 MsG0580027361.01.T01:intron 40.0%
ACTCATTCACCACCTATGAA+CGG - Chr5:59113858-59113877 None:intergenic 40.0%
ACTGTAACTTGACCGTTCAT+AGG + Chr5:59113843-59113862 MsG0580027361.01.T01:three_prime_UTR 40.0%
AGAATAACAGAATGGACAGG+TGG - Chr5:59110633-59110652 None:intergenic 40.0%
AGAGAAGACGCTCAAGTATT+AGG - Chr5:59110702-59110721 None:intergenic 40.0%
AGCAGAGGATTAAACCTTCT+GGG + Chr5:59111266-59111285 MsG0580027361.01.T01:intron 40.0%
AGGTGTATGTTAGGAGAGAT+AGG + Chr5:59110067-59110086 MsG0580027361.01.T01:intron 40.0%
ATGGAGAATAATCTCCTTGG+AGG + Chr5:59110422-59110441 MsG0580027361.01.T01:intron 40.0%
ATGTGATTAGACATACTGGG+AGG + Chr5:59110241-59110260 MsG0580027361.01.T01:intron 40.0%
ATTGAAGCCAGAACAAAGCT+CGG - Chr5:59108735-59108754 None:intergenic 40.0%
CAACACAAGTCAACATTTGG+TGG - Chr5:59109722-59109741 None:intergenic 40.0%
CAAGAGTCCTATCTATCCTT+GGG - Chr5:59111820-59111839 None:intergenic 40.0%
CAAGCCTGACTAAAAAACGA+GGG + Chr5:59112104-59112123 MsG0580027361.01.T01:intron 40.0%
CAATAAGTAGAGAGAAGGAG+GGG - Chr5:59110566-59110585 None:intergenic 40.0%
CCAACATAAACCACACTAAC+AGG - Chr5:59111232-59111251 None:intergenic 40.0%
CCAAGCTTTCAATACTTGGA+AGG + Chr5:59112447-59112466 MsG0580027361.01.T01:intron 40.0%
CCAATAAGTAGAGAGAAGGA+GGG - Chr5:59110567-59110586 None:intergenic 40.0%
CCCCTAATAAACATTCCAAG+TGG - Chr5:59109310-59109329 None:intergenic 40.0%
CCTCAACACAAGTCAACATT+TGG - Chr5:59109725-59109744 None:intergenic 40.0%
CCTGTTAGTGTGGTTTATGT+TGG + Chr5:59111229-59111248 MsG0580027361.01.T01:intron 40.0%
CGATCTCAACAAGCTTCAAA+AGG + Chr5:59108447-59108466 MsG0580027361.01.T01:CDS 40.0%
CGTACAATACACGAAATGGT+GGG - Chr5:59113220-59113239 None:intergenic 40.0%
CTAACTCATCCTTGCAAAAC+CGG - Chr5:59111883-59111902 None:intergenic 40.0%
CTAGGAAGGGAATGAAAGAA+AGG + Chr5:59110199-59110218 MsG0580027361.01.T01:intron 40.0%
CTGTAAAGAAGGAAACACAG+CGG + Chr5:59110974-59110993 MsG0580027361.01.T01:intron 40.0%
CTGTTTGAGCAAAACTAGAG+TGG - Chr5:59113958-59113977 None:intergenic 40.0%
CTTTCTTTCATTCCCTTCCT+AGG - Chr5:59110201-59110220 None:intergenic 40.0%
GAATTGTTGTCACACCAGTA+GGG - Chr5:59110496-59110515 None:intergenic 40.0%
GCGTTGAAGATCTCTAATGT+TGG - Chr5:59108407-59108426 None:intergenic 40.0%
GGAATTGAAACCATATGGCA+GGG - Chr5:59111154-59111173 None:intergenic 40.0%
GGTATGAACTGACCCTAAAA+GGG - Chr5:59108714-59108733 None:intergenic 40.0%
GTAGATCCTAGCTACTAGAT+AGG + Chr5:59112921-59112940 MsG0580027361.01.T01:intron 40.0%
GTGGTTTATGTTGGGAAAGT+TGG + Chr5:59111238-59111257 MsG0580027361.01.T01:intron 40.0%
GTTGAATGATCAGCACATTG+AGG - Chr5:59110864-59110883 None:intergenic 40.0%
TAGAGATCTTCAACGCGAAT+TGG + Chr5:59108411-59108430 MsG0580027361.01.T01:CDS 40.0%
TATAAGAGGAGGGGTAAAAG+AGG - Chr5:59110732-59110751 None:intergenic 40.0%
TATGTTAGGAGAGATAGGAG+AGG + Chr5:59110072-59110091 MsG0580027361.01.T01:intron 40.0%
TCAAGAGTCCTATCTATCCT+TGG - Chr5:59111821-59111840 None:intergenic 40.0%
TCCAATAAGTAGAGAGAAGG+AGG - Chr5:59110568-59110587 None:intergenic 40.0%
TCTCTTGCGAACATTTGCAT+TGG - Chr5:59109142-59109161 None:intergenic 40.0%
TGAATTGTTGTCACACCAGT+AGG - Chr5:59110497-59110516 None:intergenic 40.0%
TGAGCGGAATTGAAACCATA+TGG - Chr5:59111159-59111178 None:intergenic 40.0%
TGGAAATTCCGCCTTAATTG+CGG + Chr5:59111699-59111718 MsG0580027361.01.T01:intron 40.0%
TGGATGGAGAATAATCTCCT+TGG + Chr5:59110419-59110438 MsG0580027361.01.T01:intron 40.0%
TGGGTCCTGTGTCTTATATA+TGG + Chr5:59112978-59112997 MsG0580027361.01.T01:intron 40.0%
TGTAATGAAGGCAAACCCAA+AGG - Chr5:59111751-59111770 None:intergenic 40.0%
TGTTAAGCAAGATTTGGCTG+AGG + Chr5:59109116-59109135 MsG0580027361.01.T01:CDS 40.0%
TTCGGCATCAAAAGTCACAT+TGG - Chr5:59113900-59113919 None:intergenic 40.0%
TTCTCGCAAATCTTACGGTT+TGG + Chr5:59110899-59110918 MsG0580027361.01.T01:intron 40.0%
TTTGTGAAAGCAAAGGAAGG+AGG + Chr5:59108354-59108373 MsG0580027361.01.T01:five_prime_UTR 40.0%
! AGGATAGATGTTGGTTAGCA+TGG - Chr5:59112188-59112207 None:intergenic 40.0%
! CTTTGGCTAGTTAGTTTGGA+AGG + Chr5:59110166-59110185 MsG0580027361.01.T01:intron 40.0%
! CTTTTGATGCCGAAGAAAGA+AGG + Chr5:59113906-59113925 MsG0580027361.01.T01:three_prime_UTR 40.0%
!! AACAAAGATCAAGAGGTGTC+AGG - Chr5:59111660-59111679 None:intergenic 40.0%
!! ACAAAGATCAAGAGGTGTCA+GGG - Chr5:59111659-59111678 None:intergenic 40.0%
!! ACGGATTGCTGCATGTTTTA+TGG + Chr5:59112653-59112672 MsG0580027361.01.T01:intron 40.0%
!! AGCTTTGTTCTGGCTTCAAT+TGG + Chr5:59108735-59108754 MsG0580027361.01.T01:intron 40.0%
!! CCAAATGTTGACTTGTGTTG+AGG + Chr5:59109722-59109741 MsG0580027361.01.T01:intron 40.0%
!! CCTTCCAAGTATTGAAAGCT+TGG - Chr5:59112450-59112469 None:intergenic 40.0%
!! CTTCATTGTGTTGGCTTTGA+GGG + Chr5:59111782-59111801 MsG0580027361.01.T01:intron 40.0%
!! GCTTTGTTCTGGCTTCAATT+GGG + Chr5:59108736-59108755 MsG0580027361.01.T01:intron 40.0%
!! TCTCGGATTAGTTGGTCTTT+GGG + Chr5:59108786-59108805 MsG0580027361.01.T01:intron 40.0%
!! TTCATTGTGTTGGCTTTGAG+GGG + Chr5:59111783-59111802 MsG0580027361.01.T01:intron 40.0%
!! TTGACTTGTGTTGAGGAGTT+TGG + Chr5:59109729-59109748 MsG0580027361.01.T01:intron 40.0%
!!! ACAACCCTCGTTTTTTAGTC+AGG - Chr5:59112111-59112130 None:intergenic 40.0%
!!! CTCGTTTTTTAGTCAGGCTT+GGG - Chr5:59112105-59112124 None:intergenic 40.0%
!!! GGGGAGTTTTTGGAGTTATT+AGG - Chr5:59110536-59110555 None:intergenic 40.0%
AAACCTTCTGGGTCAGTCAA+AGG + Chr5:59111277-59111296 MsG0580027361.01.T01:intron 45.0%
AAATCAGCAGACTGGAAAGC+AGG - Chr5:59111625-59111644 None:intergenic 45.0%
AACCTTCCACATATTGGGCA+TGG + Chr5:59111196-59111215 MsG0580027361.01.T01:intron 45.0%
AAGATGCAATCTCTTCAGGC+TGG + Chr5:59113782-59113801 MsG0580027361.01.T01:CDS 45.0%
AATCAGCAGACTGGAAAGCA+GGG - Chr5:59111624-59111643 None:intergenic 45.0%
AATCTCTTCAGGCTGGGAAA+GGG + Chr5:59113789-59113808 MsG0580027361.01.T01:CDS 45.0%
ACAACTTTATCGTTGCGCCA+AGG + Chr5:59113346-59113365 MsG0580027361.01.T01:intron 45.0%
ACACACACTGTGTTCGGAAA+GGG + Chr5:59113192-59113211 MsG0580027361.01.T01:intron 45.0%
ACAGTAAGGTTGCTGCCTTA+AGG - Chr5:59110006-59110025 None:intergenic 45.0%
ACAGTATCACAATGAGGGGA+AGG - Chr5:59112217-59112236 None:intergenic 45.0%
ACCAAAGAAAACAGAGGCCA+TGG - Chr5:59110830-59110849 None:intergenic 45.0%
ACCTTCCACATATTGGGCAT+GGG + Chr5:59111197-59111216 MsG0580027361.01.T01:intron 45.0%
AGATGCAATCTCTTCAGGCT+GGG + Chr5:59113783-59113802 MsG0580027361.01.T01:CDS 45.0%
ATATGGCAGGGAGTTTGAGA+GGG - Chr5:59111142-59111161 None:intergenic 45.0%
CAAGTATTAGGAGGACAGCT+GGG - Chr5:59110690-59110709 None:intergenic 45.0%
CAATGAGGGGAAGGATAACA+AGG - Chr5:59112208-59112227 None:intergenic 45.0%
CACCCTTCTCGCAAATCTTA+CGG + Chr5:59110894-59110913 MsG0580027361.01.T01:intron 45.0%
CCAAGCCTGACTAAAAAACG+AGG + Chr5:59112103-59112122 MsG0580027361.01.T01:intron 45.0%
CCCTCCTTCTCTCTACTTAT+TGG + Chr5:59110564-59110583 MsG0580027361.01.T01:intron 45.0%
CCTATAACAAGGAGGCCTTA+AGG + Chr5:59109988-59110007 MsG0580027361.01.T01:intron 45.0%
CCTCAAAGCCAACACAATGA+AGG - Chr5:59111784-59111803 None:intergenic 45.0%
CGAAAATGAGCTCGTTCTCA+AGG + Chr5:59108623-59108642 MsG0580027361.01.T01:CDS 45.0%
CGGAATTGAAACCATATGGC+AGG - Chr5:59111155-59111174 None:intergenic 45.0%
CGGTATGAACTGACCCTAAA+AGG - Chr5:59108715-59108734 None:intergenic 45.0%
CTCCAACACCTTCATTGTGT+TGG + Chr5:59111773-59111792 MsG0580027361.01.T01:intron 45.0%
CTCTTCCAAATCTTGAACCG+TGG - Chr5:59112799-59112818 None:intergenic 45.0%
CTTAGTTTACCCATGTCGAG+TGG + Chr5:59109943-59109962 MsG0580027361.01.T01:intron 45.0%
CTTCAATTGGGTTCTGCTAG+TGG + Chr5:59108748-59108767 MsG0580027361.01.T01:intron 45.0%
CTTGTGACCTTTCAGTCACA+TGG + Chr5:59113321-59113340 MsG0580027361.01.T01:intron 45.0%
GAAAACAGAGGCCATGGTAT+TGG - Chr5:59110824-59110843 None:intergenic 45.0%
GAAGACGCTCAAGTATTAGG+AGG - Chr5:59110699-59110718 None:intergenic 45.0%
GACTAGAGCCTATAACAAGG+AGG + Chr5:59109980-59109999 MsG0580027361.01.T01:intron 45.0%
GAGGAGTTTGGATAGTGTGT+AGG + Chr5:59109741-59109760 MsG0580027361.01.T01:intron 45.0%
GATGCCACCAAAGAAAACAG+AGG - Chr5:59110836-59110855 None:intergenic 45.0%
GCGAGAATAACAGAATGGAC+AGG - Chr5:59110636-59110655 None:intergenic 45.0%
GCGTACAATACACGAAATGG+TGG - Chr5:59113221-59113240 None:intergenic 45.0%
GCTGCGTACAATACACGAAA+TGG - Chr5:59113224-59113243 None:intergenic 45.0%
GGATCATGATTGGAGTGCAA+AGG - Chr5:59110595-59110614 None:intergenic 45.0%
GGGTACCTTAAGAACAAGCT+TGG - Chr5:59108694-59108713 None:intergenic 45.0%
GTAACTTGACCGTTCATAGG+TGG + Chr5:59113846-59113865 MsG0580027361.01.T01:three_prime_UTR 45.0%
GTCTTAATGCCATCCCTGTT+CGG + Chr5:59113003-59113022 MsG0580027361.01.T01:intron 45.0%
GTTGTTGCCATGTGACTGAA+AGG - Chr5:59113296-59113315 None:intergenic 45.0%
TAGAGGCCTATCTAGTAGCT+AGG - Chr5:59112930-59112949 None:intergenic 45.0%
TCAAGTATTAGGAGGACAGC+TGG - Chr5:59110691-59110710 None:intergenic 45.0%
TCGCCTAAATTGCGACCTTT+GGG + Chr5:59111733-59111752 MsG0580027361.01.T01:intron 45.0%
TGAAACGAAAGAGAGAGCCT+TGG - Chr5:59113366-59113385 None:intergenic 45.0%
TGATGCCACGGTTCAAGATT+TGG + Chr5:59112791-59112810 MsG0580027361.01.T01:CDS 45.0%
TGATTAGACATACTGGGAGG+AGG + Chr5:59110244-59110263 MsG0580027361.01.T01:intron 45.0%
TTGATGCCGAAGAAAGAAGG+TGG + Chr5:59113909-59113928 MsG0580027361.01.T01:three_prime_UTR 45.0%
! AAGGAGAAAAGTGTGCACAG+GGG - Chr5:59110659-59110678 None:intergenic 45.0%
! ACCATGGCCTCTGTTTTCTT+TGG + Chr5:59110826-59110845 MsG0580027361.01.T01:intron 45.0%
! AGAAGGAGAAAAGTGTGCAC+AGG - Chr5:59110661-59110680 None:intergenic 45.0%
! AGCCAACACAATGAAGGTGT+TGG - Chr5:59111778-59111797 None:intergenic 45.0%
! ATGGCCTCTGTTTTCTTTGG+TGG + Chr5:59110829-59110848 MsG0580027361.01.T01:intron 45.0%
! CCTTAAGGCCTCCTTGTTAT+AGG - Chr5:59109991-59110010 None:intergenic 45.0%
! CGGTTTTGCAAGGATGAGTT+AGG + Chr5:59111881-59111900 MsG0580027361.01.T01:intron 45.0%
! GAAGGAGAAAAGTGTGCACA+GGG - Chr5:59110660-59110679 None:intergenic 45.0%
! TCTCTATAGGAGTCTAGCTC+TGG - Chr5:59111017-59111036 None:intergenic 45.0%
! TGCTTTCCAGTCTGCTGATT+TGG + Chr5:59111624-59111643 MsG0580027361.01.T01:intron 45.0%
! TGGCTAGTTAGTTTGGAAGG+AGG + Chr5:59110169-59110188 MsG0580027361.01.T01:intron 45.0%
!! ACTGTTCTAAGGACCAGTTC+AGG - Chr5:59112305-59112324 None:intergenic 45.0%
!! ATGGTATTGGTAGTGGCTCT+GGG - Chr5:59110811-59110830 None:intergenic 45.0%
!! CAACACAATGAAGGTGTTGG+AGG - Chr5:59111775-59111794 None:intergenic 45.0%
!! CCTTCATTGTGTTGGCTTTG+AGG + Chr5:59111781-59111800 MsG0580027361.01.T01:intron 45.0%
!! CTCTCGGATTAGTTGGTCTT+TGG + Chr5:59108785-59108804 MsG0580027361.01.T01:intron 45.0%
!! GATTGGTCTCTCGGATTAGT+TGG + Chr5:59108778-59108797 MsG0580027361.01.T01:intron 45.0%
!! GTTCATACCGAGCTTTGTTC+TGG + Chr5:59108725-59108744 MsG0580027361.01.T01:intron 45.0%
!! TCATTGTGTTGGCTTTGAGG+GGG + Chr5:59111784-59111803 MsG0580027361.01.T01:intron 45.0%
!!! CCTCGTTTTTTAGTCAGGCT+TGG - Chr5:59112106-59112125 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTCAAT+AGG + Chr5:59109038-59109057 MsG0580027361.01.T01:intron 5.0%
AAGTAGAGAGAAGGAGGGGA+AGG - Chr5:59110562-59110581 None:intergenic 50.0%
AAGTGTAGAAAAGGGCAGCC+CGG + Chr5:59113153-59113172 MsG0580027361.01.T01:intron 50.0%
ACCCATGTCGAGTGGTTGTT+CGG + Chr5:59109951-59109970 MsG0580027361.01.T01:intron 50.0%
AGACCAAAACAGGCCTGAAC+TGG + Chr5:59112289-59112308 MsG0580027361.01.T01:intron 50.0%
AGAGAAGGAGGGGAAGGAAA+GGG - Chr5:59110556-59110575 None:intergenic 50.0%
AGGGGGCGAGAATAACAGAA+TGG - Chr5:59110641-59110660 None:intergenic 50.0%
AGGTCGCAATTTAGGCGACT+AGG - Chr5:59111731-59111750 None:intergenic 50.0%
AGGTGGCAAGCAAGGATTTG+AGG - Chr5:59110616-59110635 None:intergenic 50.0%
ATTCAAGGGAACAGCCGAAC+AGG - Chr5:59113020-59113039 None:intergenic 50.0%
CAATCTCTTCAGGCTGGGAA+AGG + Chr5:59113788-59113807 MsG0580027361.01.T01:CDS 50.0%
CACACACACTGTGTTCGGAA+AGG + Chr5:59113191-59113210 MsG0580027361.01.T01:intron 50.0%
CACACACTGTGTTCGGAAAG+GGG + Chr5:59113193-59113212 MsG0580027361.01.T01:intron 50.0%
CAGAGCCACTACCAATACCA+TGG + Chr5:59110810-59110829 MsG0580027361.01.T01:intron 50.0%
CATATGGCAGGGAGTTTGAG+AGG - Chr5:59111143-59111162 None:intergenic 50.0%
CCATGTGACTGAAAGGTCAC+GGG - Chr5:59113289-59113308 None:intergenic 50.0%
CTCTCAAACTCCCTGCCATA+TGG + Chr5:59111141-59111160 MsG0580027361.01.T01:intron 50.0%
CTTCCTTTGACTGACCCAGA+AGG - Chr5:59111283-59111302 None:intergenic 50.0%
GACAGCGCCATCACACATTT+AGG + Chr5:59108958-59108977 MsG0580027361.01.T01:intron 50.0%
GCCATGTGACTGAAAGGTCA+CGG - Chr5:59113290-59113309 None:intergenic 50.0%
GGAAAGTTGGACAGAAGCAG+AGG + Chr5:59111251-59111270 MsG0580027361.01.T01:intron 50.0%
GGACAGCTGGGAGTAAAAGA+AGG - Chr5:59110678-59110697 None:intergenic 50.0%
GGTCGCAATTTAGGCGACTA+GGG - Chr5:59111730-59111749 None:intergenic 50.0%
GTCGCAATTTAGGCGACTAG+GGG - Chr5:59111729-59111748 None:intergenic 50.0%
GTCGCCTAAATTGCGACCTT+TGG + Chr5:59111732-59111751 MsG0580027361.01.T01:intron 50.0%
GTGAAAGCAAAGGAAGGAGG+AGG + Chr5:59108357-59108376 MsG0580027361.01.T01:five_prime_UTR 50.0%
TATGGCAGGGAGTTTGAGAG+GGG - Chr5:59111141-59111160 None:intergenic 50.0%
TCCCACACACACACTGTGTT+CGG + Chr5:59113186-59113205 MsG0580027361.01.T01:intron 50.0%
TCCGAACACAGTGTGTGTGT+GGG - Chr5:59113190-59113209 None:intergenic 50.0%
TGTTCGGCTGTTCCCTTGAA+TGG + Chr5:59113019-59113038 MsG0580027361.01.T01:intron 50.0%
TTCAAGGGAACAGCCGAACA+GGG - Chr5:59113019-59113038 None:intergenic 50.0%
TTCCGAACACAGTGTGTGTG+TGG - Chr5:59113191-59113210 None:intergenic 50.0%
! AGGAGAAAAGTGTGCACAGG+GGG - Chr5:59110658-59110677 None:intergenic 50.0%
! CTGCTAGTGGACAGTTGGAT+TGG + Chr5:59108761-59108780 MsG0580027361.01.T01:intron 50.0%
! GCAGAATCACTGGCTGGAAA+TGG - Chr5:59111597-59111616 None:intergenic 50.0%
! GCAGGGTTTTGCAGAATCAC+TGG - Chr5:59111607-59111626 None:intergenic 50.0%
! GGGAAGGAAAGGGGAGTTTT+TGG - Chr5:59110546-59110565 None:intergenic 50.0%
! GGTGCTGAGAAGAGAGAGAA+AGG - Chr5:59111085-59111104 None:intergenic 50.0%
! GGTGTTGGAGGCTGTAATGA+AGG - Chr5:59111763-59111782 None:intergenic 50.0%
! GGTTTTGCAGAATCACTGGC+TGG - Chr5:59111603-59111622 None:intergenic 50.0%
!! AAGGAGGAGAGTACCTAGGA+AGG + Chr5:59110185-59110204 MsG0580027361.01.T01:intron 50.0%
!! AGAGGCCATGGTATTGGTAG+TGG - Chr5:59110818-59110837 None:intergenic 50.0%
!! AGGAGGAGAGTACCTAGGAA+GGG + Chr5:59110186-59110205 MsG0580027361.01.T01:intron 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG - Chr5:59111869-59111888 None:intergenic 50.0%
!! CATGGTATTGGTAGTGGCTC+TGG - Chr5:59110812-59110831 None:intergenic 50.0%
!! CCTTACAAGCCGGTTTTGCA+AGG + Chr5:59111871-59111890 MsG0580027361.01.T01:intron 50.0%
!! CCTTGCAAAACCGGCTTGTA+AGG - Chr5:59111874-59111893 None:intergenic 50.0%
!! GGACAGTTGGATTGGTCTCT+CGG + Chr5:59108769-59108788 MsG0580027361.01.T01:intron 50.0%
!! GGATTAGTTGGTCTTTGGGC+CGG + Chr5:59108790-59108809 MsG0580027361.01.T01:intron 50.0%
!! TCACTATGAGAGCACCCTAC+TGG + Chr5:59110479-59110498 MsG0580027361.01.T01:intron 50.0%
!! TGGCTCTGGGGAGAAAGAAA+TGG - Chr5:59110798-59110817 None:intergenic 50.0%
!! TGGTATTGGTAGTGGCTCTG+GGG - Chr5:59110810-59110829 None:intergenic 50.0%
!! TTGGAAGGAGGAGAGTACCT+AGG + Chr5:59110181-59110200 MsG0580027361.01.T01:intron 50.0%
AGCAGCCCATGCCCAATATG+TGG - Chr5:59111205-59111224 None:intergenic 55.0%
AGCCGAACAACCACTCGACA+TGG - Chr5:59109956-59109975 None:intergenic 55.0%
ATCACGCACCAGGCCATTCA+AGG - Chr5:59113035-59113054 None:intergenic 55.0%
CCCGTGACCTTTCAGTCACA+TGG + Chr5:59113286-59113305 MsG0580027361.01.T01:intron 55.0%
CTAGGGGTGGACCGCAATTA+AGG - Chr5:59111713-59111732 None:intergenic 55.0%
GAATGGACAGGTGGCAAGCA+AGG - Chr5:59110624-59110643 None:intergenic 55.0%
GAGAAGGAGGGGAAGGAAAG+GGG - Chr5:59110555-59110574 None:intergenic 55.0%
GAGAGAAGGAGGGGAAGGAA+AGG - Chr5:59110557-59110576 None:intergenic 55.0%
GCAATTTAGGCGACTAGGGG+TGG - Chr5:59111726-59111745 None:intergenic 55.0%
GCACTCCTCACCTTACAAGC+CGG + Chr5:59111861-59111880 MsG0580027361.01.T01:intron 55.0%
GCCCATGCCCAATATGTGGA+AGG - Chr5:59111201-59111220 None:intergenic 55.0%
GCCGAACAACCACTCGACAT+GGG - Chr5:59109955-59109974 None:intergenic 55.0%
GCTGCTTCTCCCTGTTAGTG+TGG + Chr5:59111219-59111238 MsG0580027361.01.T01:intron 55.0%
GTTGGTTAGCATGGTGTGCC+TGG - Chr5:59112179-59112198 None:intergenic 55.0%
TCACGCACCAGGCCATTCAA+GGG - Chr5:59113034-59113053 None:intergenic 55.0%
TCTTCAGGCTGGGAAAGGGA+AGG + Chr5:59113793-59113812 MsG0580027361.01.T01:CDS 55.0%
! AGGGGGTGGATTTAGTCCCA+AGG + Chr5:59111801-59111820 MsG0580027361.01.T01:intron 55.0%
! GGACCAGTTCAGGCCTGTTT+TGG - Chr5:59112295-59112314 None:intergenic 55.0%
! GGGTTCTGCTAGTGGACAGT+TGG + Chr5:59108756-59108775 MsG0580027361.01.T01:intron 55.0%
! TGTGTGGGAGCTTTGTGCAC+CGG - Chr5:59113175-59113194 None:intergenic 55.0%
!! AGGAGTCTAGCTCTGGCAGT+AGG - Chr5:59111010-59111029 None:intergenic 55.0%
!! CAGGAAGCGTCTTGATGCCA+CGG + Chr5:59112779-59112798 MsG0580027361.01.T01:intron 55.0%
!! TTGTGTTGGCTTTGAGGGGG+TGG + Chr5:59111787-59111806 MsG0580027361.01.T01:intron 55.0%
AGGGAACAGCCGAACAGGGA+TGG - Chr5:59113015-59113034 None:intergenic 60.0%
GAGGGGAGCAAACAGTGCAG+AGG - Chr5:59111124-59111143 None:intergenic 60.0%
GGCTGTTCCCTTGAATGGCC+TGG + Chr5:59113024-59113043 MsG0580027361.01.T01:intron 60.0%
GGGGTGGACCGCAATTAAGG+CGG - Chr5:59111710-59111729 None:intergenic 60.0%
! GTGTGGGAGCTTTGTGCACC+GGG - Chr5:59113174-59113193 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 59108340 59114095 59108340 ID=MsG0580027361.01;Name=MsG0580027361.01
Chr5 mRNA 59108340 59114095 59108340 ID=MsG0580027361.01.T01;Parent=MsG0580027361.01;Name=MsG0580027361.01.T01;_AED=0.44;_eAED=0.44;_QI=54|1|1|1|1|1|5|275|129
Chr5 exon 59108340 59108469 59108340 ID=MsG0580027361.01.T01:exon:13279;Parent=MsG0580027361.01.T01
Chr5 exon 59108574 59108644 59108574 ID=MsG0580027361.01.T01:exon:13280;Parent=MsG0580027361.01.T01
Chr5 exon 59109060 59109184 59109060 ID=MsG0580027361.01.T01:exon:13281;Parent=MsG0580027361.01.T01
Chr5 exon 59112782 59112842 59112782 ID=MsG0580027361.01.T01:exon:13282;Parent=MsG0580027361.01.T01
Chr5 exon 59113764 59114095 59113764 ID=MsG0580027361.01.T01:exon:13283;Parent=MsG0580027361.01.T01
Chr5 five_prime_UTR 59108340 59108393 59108340 ID=MsG0580027361.01.T01:five_prime_utr;Parent=MsG0580027361.01.T01
Chr5 CDS 59108394 59108469 59108394 ID=MsG0580027361.01.T01:cds;Parent=MsG0580027361.01.T01
Chr5 CDS 59108574 59108644 59108574 ID=MsG0580027361.01.T01:cds;Parent=MsG0580027361.01.T01
Chr5 CDS 59109060 59109184 59109060 ID=MsG0580027361.01.T01:cds;Parent=MsG0580027361.01.T01
Chr5 CDS 59112782 59112842 59112782 ID=MsG0580027361.01.T01:cds;Parent=MsG0580027361.01.T01
Chr5 CDS 59113764 59113820 59113764 ID=MsG0580027361.01.T01:cds;Parent=MsG0580027361.01.T01
Chr5 three_prime_UTR 59113821 59114095 59113821 ID=MsG0580027361.01.T01:three_prime_utr;Parent=MsG0580027361.01.T01
Gene Sequence

>MsG0580027361.01.T01

ATGAGTTCATCCAACATTAGAGATCTTCAACGCGAATTGGAGAACAAAGCTAACGATCTCAACAAGCTTCAAAAGGATATTGCGAAGAATCATCAAGTGAGAAAGAAGTACACTATTCAACTTGGCGAAAATGAGCTCGTTCTCAAGGAGTTGGATTTATTGCAAGAAGACGCAAATGTTTACAAGTTGATTGGACCTGTACTTGTTAAGCAAGATTTGGCTGAGGCCAATGCAAATGTTCGCAAGAGAATTGAATACATTTCAGCTGAACTGAAGCGTCTTGATGCCACGGTTCAAGATTTGGAAGAGAAGCAGAATAGCAAGAAAGAAACGATAATGAAATTGCAACAAAAGATGCAATCTCTTCAGGCTGGGAAAGGGAAGGCGTAG

Protein sequence

>MsG0580027361.01.T01

MSSSNIRDLQRELENKANDLNKLQKDIAKNHQVRKKYTIQLGENELVLKELDLLQEDANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATVQDLEEKQNSKKETIMKLQQKMQSLQAGKGKA*