AlfalfaGEDB | MsG0180003309.01

M. sativa cultivar ZhongmuNo.1 / MsG0180003309.01

KEGG: K10704
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003309.01.T01	KEH41953.1	65.185	135	30	3	78	212	11	128	2.88E-48	164

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003309.01.T01	Q9SJ44	52.98	151	40	3	78	212	10	145	1.10E-43	146

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003309.01.T01	A0A072VKL3	65.185	135	30	3	78	212	11	128	1.38e-48	164

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048761.01	MsG0180003309.01	0.843220	1.601739e-58	2.488718e-55
MsG0180000240.01	MsG0180003309.01	0.858962	5.744383e-63	1.492507e-59
MsG0180002973.01	MsG0180003309.01	-0.814573	1.438473e-51	9.687235e-49
MsG0180003309.01	MsG0180003725.01	-0.800011	1.760516e-48	8.108899e-46
MsG0180003309.01	MsG0180004853.01	-0.805961	1.036887e-49	5.559946e-47
MsG0180003309.01	MsG0180005676.01	0.840719	7.340428e-58	1.054744e-54
MsG0180003309.01	MsG0280006306.01	0.801235	9.908183e-49	4.707738e-46
MsG0180003309.01	MsG0280006683.01	0.880357	5.869397e-70	3.296659e-66
MsG0180003309.01	MsG0280006753.01	0.813914	2.010915e-51	1.330229e-48
MsG0180003309.01	MsG0280007062.01	-0.811626	6.371694e-51	3.963561e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003309.01.T01	MTR_1g058100	65.185	135	30	3	78	212	11	128	3.49e-52	164
MsG0180003309.01.T01	MTR_1g058100	57.516	153	32	3	78	212	11	148	9.30e-50	159
MsG0180003309.01.T01	MTR_1g058100	57.616	151	33	3	78	212	11	146	3.72e-49	157
MsG0180003309.01.T01	MTR_8g105010	46.309	149	49	3	78	210	9	142	4.69e-33	117
MsG0180003309.01.T01	MTR_8g105010	46.259	147	48	3	78	208	9	140	1.08e-31	113

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003309.01.T01	AT3G52560	52.564	156	51	3	78	212	11	164	1.29e-45	149
MsG0180003309.01.T01	AT2G36060	53.333	150	40	3	78	212	10	144	4.48e-45	147
MsG0180003309.01.T01	AT2G36060	52.980	151	40	3	78	212	10	145	1.13e-44	146
MsG0180003309.01.T01	AT3G52560	52.980	151	40	3	78	212	11	146	9.36e-44	144
MsG0180003309.01.T01	AT2G36060	53.642	151	40	4	78	212	10	146	1.14e-43	143
MsG0180003309.01.T01	AT3G52560	53.642	151	40	4	78	212	11	147	8.94e-43	141
MsG0180003309.01.T01	AT3G52560	68.182	88	12	1	141	212	23	110	9.32e-35	119
MsG0180003309.01.T01	AT1G23260	43.243	148	53	3	79	210	10	142	4.28e-30	109
MsG0180003309.01.T01	AT1G70660	40.940	149	57	3	78	210	9	142	1.08e-28	105
MsG0180003309.01.T01	AT1G70660	40.940	149	57	3	78	210	9	142	1.73e-28	105

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Find 77 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGGCAGCCCCTCATAAC+CGG	0.419954	1:-60362983	MsG0180003309.01.T01:CDS
AACATGTTCTTGAATTCAGA+AGG	0.532974	1:+60362849	None:intergenic
AAGCTTGTCCAGCCTCCAGA+AGG	0.603455	1:-60362960	MsG0180003309.01.T01:CDS
AAGGAACTTCAGATTGCTGG+AGG	0.606974	1:-60364136	MsG0180003309.01.T01:CDS
AAGTGAAGCCTTCCAAGATC+AGG	0.488997	1:+60366451	None:intergenic
AAGTTGTCACATATTTCCTT+TGG	0.396744	1:-60366388	MsG0180003309.01.T01:intron
AATTTGGGCTTCTTGCAAAT+TGG	0.294147	1:-60363052	MsG0180003309.01.T01:CDS
ACAACGAGATCCTATTGGAT+CGG	0.617356	1:+60366263	None:intergenic
ACTTTGTCAACTGTGCTGAA+GGG	0.624860	1:-60362774	MsG0180003309.01.T01:three_prime_UTR
AGAGAAATACTTACATTATG+GGG	0.501433	1:+60364010	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATCTCAAAAAGACACAT+TGG	+	Chr1:60362967-60362986	None:intergenic	30.0%
AACATGTTCTTGAATTCAGA+AGG	+	Chr1:60366240-60366259	None:intergenic	30.0%
AAGAGAACACCTAAAATTTG+GGG	+	Chr1:60362745-60362764	None:intergenic	30.0%
AAGTTGTCACATATTTCCTT+TGG	-	Chr1:60362698-60362717	MsG0180003309.01.T01:three_prime_UTR	30.0%
AATGAATGAATGTTACTGCA+AGG	-	Chr1:60364310-60364329	MsG0180003309.01.T01:intron	30.0%
ACAAGAACTCAAAAAACATG+CGG	+	Chr1:60365322-60365341	None:intergenic	30.0%
AGGTTGAACCAAAGAAATTT+GGG	-	Chr1:60366019-60366038	MsG0180003309.01.T01:intron	30.0%
ATATTACGAACACCTAACAA+TGG	+	Chr1:60365117-60365136	None:intergenic	30.0%
ATTACAGAAAACTTGCACAA+AGG	+	Chr1:60364507-60364526	None:intergenic	30.0%
CAAGAGAACACCTAAAATTT+GGG	+	Chr1:60362746-60362765	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	60362578	60366530	60362578	ID=MsG0180003309.01;Name=MsG0180003309.01
Chr1	mRNA	60362578	60366530	60362578	ID=MsG0180003309.01.T01;Parent=MsG0180003309.01;Name=MsG0180003309.01.T01;_AED=0.47;_eAED=0.50;_QI=0\|0\|0.2\|0.6\|1\|1\|5\|369\|212
Chr1	exon	60362578	60363087	60362578	ID=MsG0180003309.01.T01:exon:49321;Parent=MsG0180003309.01.T01
Chr1	exon	60363308	60363431	60363308	ID=MsG0180003309.01.T01:exon:49320;Parent=MsG0180003309.01.T01
Chr1	exon	60364024	60364198	60364024	ID=MsG0180003309.01.T01:exon:49319;Parent=MsG0180003309.01.T01
Chr1	exon	60366241	60366297	60366241	ID=MsG0180003309.01.T01:exon:49318;Parent=MsG0180003309.01.T01
Chr1	exon	60366389	60366530	60366389	ID=MsG0180003309.01.T01:exon:49317;Parent=MsG0180003309.01.T01
Chr1	CDS	60366389	60366530	60366389	ID=MsG0180003309.01.T01:cds;Parent=MsG0180003309.01.T01
Chr1	CDS	60366241	60366297	60366241	ID=MsG0180003309.01.T01:cds;Parent=MsG0180003309.01.T01
Chr1	CDS	60364024	60364198	60364024	ID=MsG0180003309.01.T01:cds;Parent=MsG0180003309.01.T01
Chr1	CDS	60363308	60363431	60363308	ID=MsG0180003309.01.T01:cds;Parent=MsG0180003309.01.T01
Chr1	CDS	60362947	60363087	60362947	ID=MsG0180003309.01.T01:cds;Parent=MsG0180003309.01.T01
Chr1	three_prime_UTR	60362578	60362946	60362578	ID=MsG0180003309.01.T01:three_prime_utr;Parent=MsG0180003309.01.T01

Gene Sequence

>MsG0180003309.01.T01

ATGGAGGTGTCGTTTGTTTGTTTGGGAGCATGCATCCCATTTTACTGGGTTCCAACTCCTGATCTTGGAAGGCTTCACTTGATGGGATTCCGGTCTCTAGGGGCCACCGACAAGGTGTCTAAGTTGTCACATATTTCCTTTGGCATAGATTTTTCCGATCCAATAGGATCTCGTTGTGCTTCTACGTGGTGTCGAAAAGTTTGTTTCAAGTTTAAGTGTATGCGCTTCAATGCAGTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAACGAGGTGAAAAAGGTATGGTGATGGCACTGTTAGCTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGCACCATCATTGGCCCCCATAATGTGGTTTTCAGGTCATATAATGTTTTCTTTTATCTCTTACTTTCAGACTGTACATGAAGGCAGAATATATCAATTGAAGCTGTTTTGTGACAAAGATTACCCAGAAAAAGCCGCCAAGTGTTCGGTTGAACCAAAGAAATTTGGGCTTCTTGCAAATTGGCAAAGAGAGTACAGCATGGAGGATATACTGACCCAGCTGAAGAAAGAAATGGCAGCCCCTCATAACCGGAAGCTTGTCCAGCCTCCAGAAGGAACTTACTTTTAG

Protein sequence

>MsG0180003309.01.T01

MEVSFVCLGACIPFYWVPTPDLGRLHLMGFRSLGATDKVSKLSHISFGIDFSDPIGSRCASTWCRKVCFKFKCMRFNAVPRNFRLLEELERGEKGMVMALLAMEWMMVMTFTCALGLAPSLAPIMWFSGHIMFSFISYFQTVHEGRIYQLKLFCDKDYPEKAAKCSVEPKKFGLLANWQREYSMEDILTQLKKEMAAPHNRKLVQPPEGTYF*