Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002973.01.T01 | XP_013467661.1 | 98.538 | 342 | 5 | 0 | 1 | 342 | 1 | 342 | 0 | 680 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002973.01.T01 | A0A072VJS3 | 98.538 | 342 | 5 | 0 | 1 | 342 | 1 | 342 | 0.0 | 680 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048404.01 | MsG0180002973.01 | 0.819367 | 1.205227e-52 | 9.255556e-50 |
| MsG0080048461.01 | MsG0180002973.01 | 0.808016 | 3.809048e-50 | 2.153844e-47 |
| MsG0080048462.01 | MsG0180002973.01 | 0.800058 | 1.722012e-48 | 7.941205e-46 |
| MsG0080048683.01 | MsG0180002973.01 | 0.811427 | 7.038785e-51 | 4.355958e-48 |
| MsG0180000334.01 | MsG0180002973.01 | 0.805887 | 1.074201e-49 | 5.749187e-47 |
| MsG0180000470.01 | MsG0180002973.01 | 0.820603 | 6.286107e-53 | 4.996298e-50 |
| MsG0180001886.01 | MsG0180002973.01 | 0.807494 | 4.918263e-50 | 2.743456e-47 |
| MsG0180002492.01 | MsG0180002973.01 | 0.801553 | 8.526370e-49 | 4.083720e-46 |
| MsG0180002973.01 | MsG0180003309.01 | -0.814573 | 1.438473e-51 | 9.687235e-49 |
| MsG0180002973.01 | MsG0180004500.01 | 0.811799 | 5.842796e-51 | 3.651335e-48 |
| MsG0180002973.01 | MsG0180004779.01 | 0.802158 | 6.405071e-49 | 3.115283e-46 |
| MsG0180002973.01 | MsG0180005962.01 | -0.816796 | 4.598196e-52 | 3.290138e-49 |
| MsG0180002973.01 | MsG0280006422.01 | 0.817843 | 2.671537e-52 | 1.967341e-49 |
| MsG0180002973.01 | MsG0280007723.01 | -0.800469 | 1.420217e-48 | 6.617965e-46 |
| MsG0180002973.01 | MsG0280008363.01 | 0.816280 | 5.997403e-52 | 4.231620e-49 |
| MsG0180002973.01 | MsG0280008615.01 | 0.821535 | 3.834901e-53 | 3.128291e-50 |
| MsG0180002973.01 | MsG0280008733.01 | 0.822851 | 1.899096e-53 | 1.608348e-50 |
| MsG0180002973.01 | MsG0280010796.01 | 0.817318 | 3.509984e-52 | 2.547648e-49 |
| MsG0180002973.01 | MsG0280011052.01 | 0.805807 | 1.116774e-49 | 5.964772e-47 |
| MsG0180002973.01 | MsG0380014701.01 | 0.816182 | 6.308488e-52 | 4.438978e-49 |
| MsG0180002973.01 | MsG0380015300.01 | 0.832684 | 8.215743e-56 | 9.250382e-53 |
| MsG0180002973.01 | MsG0380015440.01 | 0.804780 | 1.832513e-49 | 9.532673e-47 |
| MsG0180002973.01 | MsG0380015720.01 | 0.808396 | 3.161172e-50 | 1.805555e-47 |
| MsG0180002973.01 | MsG0480022207.01 | 0.803458 | 3.452081e-49 | 1.735679e-46 |
| MsG0180002973.01 | MsG0480022514.01 | 0.816243 | 6.115215e-52 | 4.310115e-49 |
| MsG0180002973.01 | MsG0480022615.01 | -0.805114 | 1.560535e-49 | 8.187623e-47 |
| MsG0180002973.01 | MsG0480022672.01 | 0.800698 | 1.275325e-48 | 5.977398e-46 |
| MsG0180002973.01 | MsG0480023261.01 | 0.811891 | 5.579205e-51 | 3.495055e-48 |
| MsG0180002973.01 | MsG0480023503.01 | 0.818030 | 2.424667e-52 | 1.794574e-49 |
| MsG0180002973.01 | MsG0480023670.01 | 0.800493 | 1.404361e-48 | 6.548244e-46 |
| MsG0180002973.01 | MsG0480023718.01 | 0.806063 | 9.868979e-50 | 5.305677e-47 |
| MsG0180002973.01 | MsG0480023814.01 | 0.818031 | 2.422799e-52 | 1.793300e-49 |
| MsG0180002973.01 | MsG0580024185.01 | 0.803641 | 3.164583e-49 | 1.598569e-46 |
| MsG0180002973.01 | MsG0580024928.01 | -0.816092 | 6.609768e-52 | 4.639479e-49 |
| MsG0180002973.01 | MsG0580027320.01 | 0.813032 | 3.142116e-51 | 2.029420e-48 |
| MsG0180002973.01 | MsG0580028991.01 | 0.826268 | 2.977423e-54 | 2.778831e-51 |
| MsG0180002973.01 | MsG0580029236.01 | 0.800810 | 1.210397e-48 | 5.689152e-46 |
| MsG0180002973.01 | MsG0680030447.01 | 0.808287 | 3.336085e-50 | 1.899972e-47 |
| MsG0180002973.01 | MsG0780037141.01 | 0.806162 | 9.404031e-50 | 5.068682e-47 |
| MsG0180002973.01 | MsG0780038309.01 | -0.803137 | 4.024304e-49 | 2.006672e-46 |
| MsG0180002973.01 | MsG0780038836.01 | 0.809413 | 1.916137e-50 | 1.124314e-47 |
| MsG0180002973.01 | MsG0780039222.01 | -0.802473 | 5.517487e-49 | 2.705154e-46 |
| MsG0180002973.01 | MsG0780039867.01 | -0.801520 | 8.663608e-49 | 4.145951e-46 |
| MsG0180002973.01 | MsG0780039896.01 | 0.802299 | 5.991633e-49 | 2.924768e-46 |
| MsG0180002973.01 | MsG0880042324.01 | 0.802296 | 6.001409e-49 | 2.929302e-46 |
| MsG0180002973.01 | MsG0880045765.01 | 0.811501 | 6.785123e-51 | 4.207167e-48 |
| MsG0180002973.01 | MsG0880046384.01 | -0.801413 | 9.112449e-49 | 4.348911e-46 |
| MsG0180002973.01 | MsG0880046457.01 | 0.804444 | 2.153739e-49 | 1.110630e-46 |
| MsG0180002973.01 | MsG0880046517.01 | 0.827157 | 1.826626e-54 | 1.749005e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002973.01.T01 | MTR_1g053910 | 98.538 | 342 | 5 | 0 | 1 | 342 | 1 | 342 | 0.0 | 680 |
| MsG0180002973.01.T01 | MTR_5g014110 | 30.460 | 348 | 187 | 15 | 1 | 309 | 1 | 332 | 1.77e-16 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002973.01.T01 | AT3G57990 | 49.744 | 390 | 119 | 14 | 1 | 337 | 1 | 366 | 1.02e-101 | 304 |
Find 99 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTACTTTGGCTCTTAATA+AGG | 0.214485 | 1:+54106789 | None:intergenic |
| CCGTCGGCTGGGGCGATTGC+AGG | 0.244684 | 1:-54106328 | MsG0180002973.01.T01:CDS |
| TCCGCAAAACGGTGGCGTTT+TGG | 0.247617 | 1:-54106419 | MsG0180002973.01.T01:CDS |
| CTGAGGTTGCGGCGAGGACT+AGG | 0.264777 | 1:-54106291 | MsG0180002973.01.T01:CDS |
| TAGGGTTCCGGCTGAGGTTA+AGG | 0.286798 | 1:-54106224 | MsG0180002973.01.T01:CDS |
| AAAGTACCCTTAAGTATTCT+AGG | 0.304763 | 1:-54106775 | MsG0180002973.01.T01:CDS |
| GAGGACTAGGGTTCCGATTA+GGG | 0.309618 | 1:-54106278 | MsG0180002973.01.T01:CDS |
| GTTGGGAAAGTGCCGTCGGC+TGG | 0.313947 | 1:-54106340 | MsG0180002973.01.T01:CDS |
| CGAGGACTAGGGTTCCGATT+AGG | 0.329022 | 1:-54106279 | MsG0180002973.01.T01:CDS |
| GGTACTTTGGCTCTTAATAA+GGG | 0.376042 | 1:+54106790 | None:intergenic |
| GGCTGATGCGAGCAAGGAAT+TGG | 0.376840 | 1:-54105861 | MsG0180002973.01.T01:CDS |
| GCGAGTTCAATTTGCTGAAC+CGG | 0.376874 | 1:-54106558 | MsG0180002973.01.T01:CDS |
| AAAGGAAAGGTTGGTGCTGC+TGG | 0.377756 | 1:-54106106 | MsG0180002973.01.T01:CDS |
| GTTAAGGGCGAAAGCGCGTT+TGG | 0.381376 | 1:-54106208 | MsG0180002973.01.T01:CDS |
| TGGTGTTCCTAGAATACTTA+AGG | 0.385759 | 1:+54106768 | None:intergenic |
| GGAGGAGGGAAAAGCTTTGA+GGG | 0.400312 | 1:-54105944 | MsG0180002973.01.T01:CDS |
| TTTCTTGTGATGGATAAAAT+CGG | 0.402604 | 1:-54106175 | MsG0180002973.01.T01:CDS |
| TAGAATACTTAAGGGTACTT+TGG | 0.408843 | 1:+54106777 | None:intergenic |
| CTCTCAACTTTCTTCCAATC+CGG | 0.423351 | 1:-54106697 | MsG0180002973.01.T01:CDS |
| GTGATTGGTGGGTTTAGTGT+TGG | 0.426235 | 1:-54106358 | MsG0180002973.01.T01:CDS |
| ACGGCGGCACGTCCCCTAAT+CGG | 0.429455 | 1:+54106265 | None:intergenic |
| AACATTTGCCCGCGGAGTGT+GGG | 0.432136 | 1:-54106147 | MsG0180002973.01.T01:CDS |
| TTGGGAAAGTGCCGTCGGCT+GGG | 0.432177 | 1:-54106339 | MsG0180002973.01.T01:CDS |
| TTCTTGTGATGGATAAAATC+GGG | 0.439577 | 1:-54106174 | MsG0180002973.01.T01:CDS |
| TGGAGGAGGGAAAAGCTTTG+AGG | 0.441086 | 1:-54105945 | MsG0180002973.01.T01:CDS |
| AGAAAGAATGAGAAGAAAAC+CGG | 0.442575 | 1:-54105920 | MsG0180002973.01.T01:CDS |
| TTGATCGTCAAAACCGGTAC+TGG | 0.445234 | 1:-54106622 | MsG0180002973.01.T01:CDS |
| TTTGTTGAATCGCCGGTGAT+TGG | 0.445790 | 1:-54106373 | MsG0180002973.01.T01:CDS |
| AGGGTTCCGGCTGAGGTTAA+GGG | 0.446628 | 1:-54106223 | MsG0180002973.01.T01:CDS |
| GGAGAGAATTCGCTAGTGTA+AGG | 0.447654 | 1:-54105970 | MsG0180002973.01.T01:CDS |
| GGAATGCTGTGGAGGATCTT+CGG | 0.449412 | 1:-54105991 | MsG0180002973.01.T01:CDS |
| GTTTCAACGTTGGACCGGAT+TGG | 0.450991 | 1:+54106683 | None:intergenic |
| TGGGAAAGTGCCGTCGGCTG+GGG | 0.454966 | 1:-54106338 | MsG0180002973.01.T01:CDS |
| GAACATTTGCCCGCGGAGTG+TGG | 0.458823 | 1:-54106148 | MsG0180002973.01.T01:CDS |
| AAGGGTTCCGTTTCTTGTGA+TGG | 0.460439 | 1:-54106185 | MsG0180002973.01.T01:CDS |
| TGATTGGTGGGTTTAGTGTT+GGG | 0.462503 | 1:-54106357 | MsG0180002973.01.T01:CDS |
| CTTTCGCCCTTAACCTCAGC+CGG | 0.466668 | 1:+54106217 | None:intergenic |
| GAAAAGCGGTTGAGGCGAAC+CGG | 0.480787 | 1:+54106525 | None:intergenic |
| GATTTGAAGAATTTGAAGAA+AGG | 0.489031 | 1:-54106124 | MsG0180002973.01.T01:CDS |
| GTTGAATCGCCGGTGATTGG+TGG | 0.493682 | 1:-54106370 | MsG0180002973.01.T01:CDS |
| AGCGAGTTTCAACGTTGGAC+CGG | 0.495604 | 1:+54106678 | None:intergenic |
| GGAATTGGAGAAGGCGTTGA+GGG | 0.502532 | 1:-54105846 | MsG0180002973.01.T01:CDS |
| CTGAACCGGAATGATAAAAC+CGG | 0.502962 | 1:-54106544 | MsG0180002973.01.T01:CDS |
| AAAACCGGTACTGGACCGTT+TGG | 0.503713 | 1:-54106613 | MsG0180002973.01.T01:CDS |
| AAGGTTGGTGCTGCTGGAGT+TGG | 0.503818 | 1:-54106100 | MsG0180002973.01.T01:CDS |
| GAATTCGCTAGTGTAAGGAT+TGG | 0.504292 | 1:-54105965 | MsG0180002973.01.T01:CDS |
| AGGGCGAAAGCGCGTTTGGA+AGG | 0.504417 | 1:-54106204 | MsG0180002973.01.T01:CDS |
| TCGGCCACATCAGCACTTGT+TGG | 0.509338 | 1:+54106073 | None:intergenic |
| TTGAGGGGAGCCACCACTGT+TGG | 0.513960 | 1:-54105830 | MsG0180002973.01.T01:CDS |
| GGTGTTCCTAGAATACTTAA+GGG | 0.514250 | 1:+54106769 | None:intergenic |
| CACCAGCTACGATTCCACTT+TGG | 0.514768 | 1:+54106743 | None:intergenic |
| TGAAGCATGAAAAGCGGTTG+AGG | 0.515244 | 1:+54106517 | None:intergenic |
| TGAGGTTGCGGCGAGGACTA+GGG | 0.516942 | 1:-54106290 | MsG0180002973.01.T01:CDS |
| TTCCAAAGTGGAATCGTAGC+TGG | 0.522097 | 1:-54106745 | MsG0180002973.01.T01:CDS |
| CGTCGGCTGGGGCGATTGCA+GGG | 0.524791 | 1:-54106327 | MsG0180002973.01.T01:CDS |
| GAAGAATTTGAAGAAAGGAA+AGG | 0.533083 | 1:-54106119 | MsG0180002973.01.T01:CDS |
| ACATTTGCCCGCGGAGTGTG+GGG | 0.535348 | 1:-54106146 | MsG0180002973.01.T01:CDS |
| CTCGACAACGGTGAACCAAA+CGG | 0.539781 | 1:+54106598 | None:intergenic |
| TTCGCTAGTGTAAGGATTGG+AGG | 0.540336 | 1:-54105962 | MsG0180002973.01.T01:CDS |
| AATTTGAAGAAAGGAAAGGT+TGG | 0.544445 | 1:-54106115 | MsG0180002973.01.T01:CDS |
| GACTGAGGCTGATGCGAGCA+AGG | 0.549803 | 1:-54105867 | MsG0180002973.01.T01:CDS |
| CCTGCAATCGCCCCAGCCGA+CGG | 0.550116 | 1:+54106328 | None:intergenic |
| TTCAAATCCCCACACTCCGC+GGG | 0.553400 | 1:+54106139 | None:intergenic |
| GGTTATGGGTTTCCGCAAAA+CGG | 0.554966 | 1:-54106430 | MsG0180002973.01.T01:CDS |
| TTGAATCGCCGGTGATTGGT+GGG | 0.555286 | 1:-54106369 | MsG0180002973.01.T01:CDS |
| ATTTGAGTTTGTTGAATCGC+CGG | 0.555808 | 1:-54106380 | MsG0180002973.01.T01:CDS |
| TGAACCAAACGGTCCAGTAC+CGG | 0.557994 | 1:+54106609 | None:intergenic |
| GGGCGAAAGCGCGTTTGGAA+GGG | 0.559583 | 1:-54106203 | MsG0180002973.01.T01:CDS |
| ACACTAAACCCACCAATCAC+CGG | 0.574720 | 1:+54106361 | None:intergenic |
| GCTAGTGTAAGGATTGGAGG+AGG | 0.592495 | 1:-54105959 | MsG0180002973.01.T01:CDS |
| TAGTGTTGGGAAAGTGCCGT+CGG | 0.595293 | 1:-54106344 | MsG0180002973.01.T01:CDS |
| TCAGCCTCAGTCGATTTCCC+AGG | 0.596668 | 1:+54105878 | None:intergenic |
| GAGGAGGGAAAAGCTTTGAG+GGG | 0.601233 | 1:-54105943 | MsG0180002973.01.T01:CDS |
| AATTCAAGCTCCAACAGTGG+TGG | 0.602493 | 1:+54105820 | None:intergenic |
| GCTACGATTCCACTTTGGAA+TGG | 0.605154 | 1:+54106748 | None:intergenic |
| TTGAATTCAAGCTCCAACAG+TGG | 0.608904 | 1:+54105817 | None:intergenic |
| TGCGAGCAAGGAATTGGAGA+AGG | 0.616295 | 1:-54105855 | MsG0180002973.01.T01:CDS |
| TGTTCCAACAAGTGCTGATG+TGG | 0.616762 | 1:-54106077 | MsG0180002973.01.T01:CDS |
| CTTCAAATCCCCACACTCCG+CGG | 0.618562 | 1:+54106138 | None:intergenic |
| TTAAAATGAAGCATGAAAAG+CGG | 0.624010 | 1:+54106511 | None:intergenic |
| AGGAATTGGAGAAGGCGTTG+AGG | 0.624601 | 1:-54105847 | MsG0180002973.01.T01:CDS |
| CTTCACAGCAAAACACGTCT+CGG | 0.629364 | 1:+54106054 | None:intergenic |
| TATGGGTTTCCGCAAAACGG+TGG | 0.635528 | 1:-54106427 | MsG0180002973.01.T01:CDS |
| GAAAGAATGAGAAGAAAACC+GGG | 0.648044 | 1:-54105919 | MsG0180002973.01.T01:CDS |
| GAATTGGAGAAGGCGTTGAG+GGG | 0.650714 | 1:-54105845 | MsG0180002973.01.T01:CDS |
| CGGGGACTGAGGTTGCGGCG+AGG | 0.653848 | 1:-54106297 | MsG0180002973.01.T01:CDS |
| TCTTGTGATGGATAAAATCG+GGG | 0.660603 | 1:-54106173 | MsG0180002973.01.T01:CDS |
| AGGACTAGGGTTCCGATTAG+GGG | 0.661644 | 1:-54106277 | MsG0180002973.01.T01:CDS |
| ATTGCTGAGGAATGCTGTGG+AGG | 0.665643 | 1:-54105999 | MsG0180002973.01.T01:CDS |
| CTAGTGTAAGGATTGGAGGA+GGG | 0.671920 | 1:-54105958 | MsG0180002973.01.T01:CDS |
| CGGGGTGGAACATTTGCCCG+CGG | 0.676900 | 1:-54106155 | MsG0180002973.01.T01:CDS |
| TGGATTGCTGAGGAATGCTG+TGG | 0.678621 | 1:-54106002 | MsG0180002973.01.T01:CDS |
| CTAGGAACACCATTCCAAAG+TGG | 0.680514 | 1:-54106757 | MsG0180002973.01.T01:CDS |
| CGGTAAGCGAGTTTCAACGT+TGG | 0.681726 | 1:+54106673 | None:intergenic |
| AGGCGGAGAATGGATTGCTG+AGG | 0.686457 | 1:-54106012 | MsG0180002973.01.T01:CDS |
| ATAACCACTAAAATCTGACC+CGG | 0.690957 | 1:+54105901 | None:intergenic |
| TGTGATGGATAAAATCGGGG+TGG | 0.694966 | 1:-54106170 | MsG0180002973.01.T01:CDS |
| TTATCCTGGGAAATCGACTG+AGG | 0.704241 | 1:-54105882 | MsG0180002973.01.T01:CDS |
| ATCAGCATAGAACTCGACAA+CGG | 0.713613 | 1:+54106586 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GATTTGAAGAATTTGAAGAA+AGG | - | Chr1:54106528-54106547 | MsG0180002973.01.T01:CDS | 25.0% |
| ! | TTAAAATGAAGCATGAAAAG+CGG | + | Chr1:54106144-54106163 | None:intergenic | 25.0% |
| !! | AGTTCGATTTTAGATGTTAA+GGG | - | Chr1:54106201-54106220 | MsG0180002973.01.T01:CDS | 25.0% |
| !! | ATTTTAGATGTTAAGGGTTA+TGG | - | Chr1:54106207-54106226 | MsG0180002973.01.T01:CDS | 25.0% |
| !! | ATTTTATCCATCACAAGAAA+CGG | + | Chr1:54106477-54106496 | None:intergenic | 25.0% |
| !! | TTCATTTTAAACCTAGGTTT+GGG | - | Chr1:54106154-54106173 | MsG0180002973.01.T01:CDS | 25.0% |
| !! | TTTTAGATGTTAAGGGTTAT+GGG | - | Chr1:54106208-54106227 | MsG0180002973.01.T01:CDS | 25.0% |
| !!! | TTTCTTGTGATGGATAAAAT+CGG | - | Chr1:54106477-54106496 | MsG0180002973.01.T01:CDS | 25.0% |
| AATTTGAAGAAAGGAAAGGT+TGG | - | Chr1:54106537-54106556 | MsG0180002973.01.T01:CDS | 30.0% | |
| AGAAAGAATGAGAAGAAAAC+CGG | - | Chr1:54106732-54106751 | MsG0180002973.01.T01:CDS | 30.0% | |
| GAAGAATTTGAAGAAAGGAA+AGG | - | Chr1:54106533-54106552 | MsG0180002973.01.T01:CDS | 30.0% | |
| ! | AAAGTACCCTTAAGTATTCT+AGG | - | Chr1:54105877-54105896 | MsG0180002973.01.T01:CDS | 30.0% |
| ! | CTTCATTTTAAACCTAGGTT+TGG | - | Chr1:54106153-54106172 | MsG0180002973.01.T01:CDS | 30.0% |
| ! | GAGTTCGATTTTAGATGTTA+AGG | - | Chr1:54106200-54106219 | MsG0180002973.01.T01:CDS | 30.0% |
| ! | TCATGCTTCATTTTAAACCT+AGG | - | Chr1:54106148-54106167 | MsG0180002973.01.T01:CDS | 30.0% |
| ! | TCATTTTAAACCTAGGTTTG+GGG | - | Chr1:54106155-54106174 | MsG0180002973.01.T01:CDS | 30.0% |
| ! | TTTTCATTGATCGTCAAAAC+CGG | - | Chr1:54106024-54106043 | MsG0180002973.01.T01:CDS | 30.0% |
| ! | TTTTGACGATCAATGAAAAC+GGG | + | Chr1:54106023-54106042 | None:intergenic | 30.0% |
| !! | GTTTTGACGATCAATGAAAA+CGG | + | Chr1:54106024-54106043 | None:intergenic | 30.0% |
| !! | TAGAATACTTAAGGGTACTT+TGG | + | Chr1:54105878-54105897 | None:intergenic | 30.0% |
| !! | TTCTTGTGATGGATAAAATC+GGG | - | Chr1:54106478-54106497 | MsG0180002973.01.T01:CDS | 30.0% |
| AAAGAAAAATCCCCAAACCT+AGG | + | Chr1:54106168-54106187 | None:intergenic | 35.0% | |
| ATAACCACTAAAATCTGACC+CGG | + | Chr1:54106754-54106773 | None:intergenic | 35.0% | |
| GAAAGAATGAGAAGAAAACC+GGG | - | Chr1:54106733-54106752 | MsG0180002973.01.T01:CDS | 35.0% | |
| GGTGTTCCTAGAATACTTAA+GGG | + | Chr1:54105886-54105905 | None:intergenic | 35.0% | |
| TGGTGTTCCTAGAATACTTA+AGG | + | Chr1:54105887-54105906 | None:intergenic | 35.0% | |
| !! | ATTTGAGTTTGTTGAATCGC+CGG | - | Chr1:54106272-54106291 | MsG0180002973.01.T01:CDS | 35.0% |
| !! | CAGATTTTAGTGGTTATCCT+GGG | - | Chr1:54106757-54106776 | MsG0180002973.01.T01:CDS | 35.0% |
| !! | GGTACTTTGGCTCTTAATAA+GGG | + | Chr1:54105865-54105884 | None:intergenic | 35.0% |
| !! | TCAGATTTTAGTGGTTATCC+TGG | - | Chr1:54106756-54106775 | MsG0180002973.01.T01:CDS | 35.0% |
| !! | TCTTGTGATGGATAAAATCG+GGG | - | Chr1:54106479-54106498 | MsG0180002973.01.T01:CDS | 35.0% |
| !! | TTTTGCTGTGAAGAGACAAA+TGG | - | Chr1:54106608-54106627 | MsG0180002973.01.T01:CDS | 35.0% |
| ATCAGCATAGAACTCGACAA+CGG | + | Chr1:54106069-54106088 | None:intergenic | 40.0% | |
| CTCTCAACTTTCTTCCAATC+CGG | - | Chr1:54105955-54105974 | MsG0180002973.01.T01:CDS | 40.0% | |
| CTGAACCGGAATGATAAAAC+CGG | - | Chr1:54106108-54106127 | MsG0180002973.01.T01:CDS | 40.0% | |
| GAATTCGCTAGTGTAAGGAT+TGG | - | Chr1:54106687-54106706 | MsG0180002973.01.T01:CDS | 40.0% | |
| ! | AAAACCGGGTCAGATTTTAG+TGG | - | Chr1:54106747-54106766 | MsG0180002973.01.T01:CDS | 40.0% |
| ! | ACAAATGGATGTTTTGCAGG+CGG | - | Chr1:54106623-54106642 | MsG0180002973.01.T01:CDS | 40.0% |
| ! | AGGGTTTCTTTTGTTCATCG+CGG | + | Chr1:54105846-54105865 | None:intergenic | 40.0% |
| ! | GAGACAAATGGATGTTTTGC+AGG | - | Chr1:54106620-54106639 | MsG0180002973.01.T01:CDS | 40.0% |
| !! | GGGTACTTTGGCTCTTAATA+AGG | + | Chr1:54105866-54105885 | None:intergenic | 40.0% |
| !! | TGATTGGTGGGTTTAGTGTT+GGG | - | Chr1:54106295-54106314 | MsG0180002973.01.T01:CDS | 40.0% |
| AACCCCCCACCTAAAATTCA+CGG | + | Chr1:54106409-54106428 | None:intergenic | 45.0% | |
| AAGGGTTCCGTTTCTTGTGA+TGG | - | Chr1:54106467-54106486 | MsG0180002973.01.T01:CDS | 45.0% | |
| ACACTAAACCCACCAATCAC+CGG | + | Chr1:54106294-54106313 | None:intergenic | 45.0% | |
| CTAGGAACACCATTCCAAAG+TGG | - | Chr1:54105895-54105914 | MsG0180002973.01.T01:CDS | 45.0% | |
| CTAGTGTAAGGATTGGAGGA+GGG | - | Chr1:54106694-54106713 | MsG0180002973.01.T01:CDS | 45.0% | |
| CTTCACAGCAAAACACGTCT+CGG | + | Chr1:54106601-54106620 | None:intergenic | 45.0% | |
| GGAGAGAATTCGCTAGTGTA+AGG | - | Chr1:54106682-54106701 | MsG0180002973.01.T01:CDS | 45.0% | |
| GGTTATGGGTTTCCGCAAAA+CGG | - | Chr1:54106222-54106241 | MsG0180002973.01.T01:CDS | 45.0% | |
| TGAAGCATGAAAAGCGGTTG+AGG | + | Chr1:54106138-54106157 | None:intergenic | 45.0% | |
| TTATCCTGGGAAATCGACTG+AGG | - | Chr1:54106770-54106789 | MsG0180002973.01.T01:CDS | 45.0% | |
| TTCCAAAGTGGAATCGTAGC+TGG | - | Chr1:54105907-54105926 | MsG0180002973.01.T01:CDS | 45.0% | |
| TTCGCTAGTGTAAGGATTGG+AGG | - | Chr1:54106690-54106709 | MsG0180002973.01.T01:CDS | 45.0% | |
| TTGATCGTCAAAACCGGTAC+TGG | - | Chr1:54106030-54106049 | MsG0180002973.01.T01:CDS | 45.0% | |
| TTTGTTGAATCGCCGGTGAT+TGG | - | Chr1:54106279-54106298 | MsG0180002973.01.T01:CDS | 45.0% | |
| ! | GCTACGATTCCACTTTGGAA+TGG | + | Chr1:54105907-54105926 | None:intergenic | 45.0% |
| !! | AAACGGGTTTTGTGAGTCGT+TGG | + | Chr1:54106007-54106026 | None:intergenic | 45.0% |
| !! | AACGGGTTTTGTGAGTCGTT+GGG | + | Chr1:54106006-54106025 | None:intergenic | 45.0% |
| !! | GAATTTTAGGTGGGGGGTTA+GGG | - | Chr1:54106410-54106429 | MsG0180002973.01.T01:CDS | 45.0% |
| !! | GCGAACCGGTTTTATCATTC+CGG | + | Chr1:54106116-54106135 | None:intergenic | 45.0% |
| !! | GCGAGTTCAATTTGCTGAAC+CGG | - | Chr1:54106094-54106113 | MsG0180002973.01.T01:CDS | 45.0% |
| !! | GTGATTGGTGGGTTTAGTGT+TGG | - | Chr1:54106294-54106313 | MsG0180002973.01.T01:CDS | 45.0% |
| !! | TGAATTTTAGGTGGGGGGTT+AGG | - | Chr1:54106409-54106428 | MsG0180002973.01.T01:CDS | 45.0% |
| !! | TGTGATGGATAAAATCGGGG+TGG | - | Chr1:54106482-54106501 | MsG0180002973.01.T01:CDS | 45.0% |
| !! | TGTTCCAACAAGTGCTGATG+TGG | - | Chr1:54106575-54106594 | MsG0180002973.01.T01:CDS | 45.0% |
| AGCGAGTTTCAACGTTGGAC+CGG | + | Chr1:54105977-54105996 | None:intergenic | 50.0% | |
| AGGACTAGGGTTCCGATTAG+GGG | - | Chr1:54106375-54106394 | MsG0180002973.01.T01:CDS | 50.0% | |
| ATTGCTGAGGAATGCTGTGG+AGG | - | Chr1:54106653-54106672 | MsG0180002973.01.T01:CDS | 50.0% | |
| CACCAGCTACGATTCCACTT+TGG | + | Chr1:54105912-54105931 | None:intergenic | 50.0% | |
| CGGTAAGCGAGTTTCAACGT+TGG | + | Chr1:54105982-54106001 | None:intergenic | 50.0% | |
| CTCGACAACGGTGAACCAAA+CGG | + | Chr1:54106057-54106076 | None:intergenic | 50.0% | |
| GAGGACTAGGGTTCCGATTA+GGG | - | Chr1:54106374-54106393 | MsG0180002973.01.T01:CDS | 50.0% | |
| GCTAGTGTAAGGATTGGAGG+AGG | - | Chr1:54106693-54106712 | MsG0180002973.01.T01:CDS | 50.0% | |
| GGAATGCTGTGGAGGATCTT+CGG | - | Chr1:54106661-54106680 | MsG0180002973.01.T01:CDS | 50.0% | |
| GTTTCAACGTTGGACCGGAT+TGG | + | Chr1:54105972-54105991 | None:intergenic | 50.0% | |
| TATGGGTTTCCGCAAAACGG+TGG | - | Chr1:54106225-54106244 | MsG0180002973.01.T01:CDS | 50.0% | |
| TGAACCAAACGGTCCAGTAC+CGG | + | Chr1:54106046-54106065 | None:intergenic | 50.0% | |
| TGCGAGCAAGGAATTGGAGA+AGG | - | Chr1:54106797-54106816 | MsG0180002973.01.T01:CDS | 50.0% | |
| TGGAGGAGGGAAAAGCTTTG+AGG | - | Chr1:54106707-54106726 | MsG0180002973.01.T01:CDS | 50.0% | |
| TGGATTGCTGAGGAATGCTG+TGG | - | Chr1:54106650-54106669 | MsG0180002973.01.T01:CDS | 50.0% | |
| TTGAATCGCCGGTGATTGGT+GGG | - | Chr1:54106283-54106302 | MsG0180002973.01.T01:CDS | 50.0% | |
| ! | AAAACCGGTACTGGACCGTT+TGG | - | Chr1:54106039-54106058 | MsG0180002973.01.T01:CDS | 50.0% |
| ! | GATGTTTTGCAGGCGGAGAA+TGG | - | Chr1:54106630-54106649 | MsG0180002973.01.T01:CDS | 50.0% |
| ! | GGAGGAGGGAAAAGCTTTGA+GGG | - | Chr1:54106708-54106727 | MsG0180002973.01.T01:CDS | 50.0% |
| !! | AAAGGAAAGGTTGGTGCTGC+TGG | - | Chr1:54106546-54106565 | MsG0180002973.01.T01:CDS | 50.0% |
| !! | AGGAATTGGAGAAGGCGTTG+AGG | - | Chr1:54106805-54106824 | MsG0180002973.01.T01:CDS | 50.0% |
| !! | CGATTGCAGGGTTGTTTTCG+GGG | - | Chr1:54106337-54106356 | MsG0180002973.01.T01:CDS | 50.0% |
| !! | GAATTGGAGAAGGCGTTGAG+GGG | - | Chr1:54106807-54106826 | MsG0180002973.01.T01:CDS | 50.0% |
| !! | GAGGAGGGAAAAGCTTTGAG+GGG | - | Chr1:54106709-54106728 | MsG0180002973.01.T01:CDS | 50.0% |
| !! | GCGATTGCAGGGTTGTTTTC+GGG | - | Chr1:54106336-54106355 | MsG0180002973.01.T01:CDS | 50.0% |
| !! | GGAATTGGAGAAGGCGTTGA+GGG | - | Chr1:54106806-54106825 | MsG0180002973.01.T01:CDS | 50.0% |
| !! | GGCGATTGCAGGGTTGTTTT+CGG | - | Chr1:54106335-54106354 | MsG0180002973.01.T01:CDS | 50.0% |
| !! | GGTTTTGTGAGTCGTTGGGT+CGG | + | Chr1:54106002-54106021 | None:intergenic | 50.0% |
| !! | TAGTGTTGGGAAAGTGCCGT+CGG | - | Chr1:54106308-54106327 | MsG0180002973.01.T01:CDS | 50.0% |
| !! | TGCCGCCGTGAATTTTAGGT+GGG | - | Chr1:54106401-54106420 | MsG0180002973.01.T01:CDS | 50.0% |
| AACATTTGCCCGCGGAGTGT+GGG | - | Chr1:54106505-54106524 | MsG0180002973.01.T01:CDS | 55.0% | |
| AGGGTTCCGGCTGAGGTTAA+GGG | - | Chr1:54106429-54106448 | MsG0180002973.01.T01:CDS | 55.0% | |
| CCCCCACCTAAAATTCACGG+CGG | + | Chr1:54106406-54106425 | None:intergenic | 55.0% | |
| CGAGGACTAGGGTTCCGATT+AGG | - | Chr1:54106373-54106392 | MsG0180002973.01.T01:CDS | 55.0% | |
| CTTCAAATCCCCACACTCCG+CGG | + | Chr1:54106517-54106536 | None:intergenic | 55.0% | |
| CTTTCGCCCTTAACCTCAGC+CGG | + | Chr1:54106438-54106457 | None:intergenic | 55.0% | |
| GAAAAGCGGTTGAGGCGAAC+CGG | + | Chr1:54106130-54106149 | None:intergenic | 55.0% | |
| GGCTGATGCGAGCAAGGAAT+TGG | - | Chr1:54106791-54106810 | MsG0180002973.01.T01:CDS | 55.0% | |
| GTTGAATCGCCGGTGATTGG+TGG | - | Chr1:54106282-54106301 | MsG0180002973.01.T01:CDS | 55.0% | |
| TAGGGTTCCGGCTGAGGTTA+AGG | - | Chr1:54106428-54106447 | MsG0180002973.01.T01:CDS | 55.0% | |
| TCGGCCACATCAGCACTTGT+TGG | + | Chr1:54106582-54106601 | None:intergenic | 55.0% | |
| TTCAAATCCCCACACTCCGC+GGG | + | Chr1:54106516-54106535 | None:intergenic | 55.0% | |
| ! | CCCAAAACGCCACCGTTTTG+CGG | + | Chr1:54106237-54106256 | None:intergenic | 55.0% |
| ! | CCGCAAAACGGTGGCGTTTT+GGG | - | Chr1:54106234-54106253 | MsG0180002973.01.T01:CDS | 55.0% |
| ! | CGCAAAACGGTGGCGTTTTG+GGG | - | Chr1:54106235-54106254 | MsG0180002973.01.T01:CDS | 55.0% |
| ! | GACGTGCCGCCGTGAATTTT+AGG | - | Chr1:54106397-54106416 | MsG0180002973.01.T01:CDS | 55.0% |
| ! | GTGCCGCCGTGAATTTTAGG+TGG | - | Chr1:54106400-54106419 | MsG0180002973.01.T01:CDS | 55.0% |
| ! | GTTAAGGGCGAAAGCGCGTT+TGG | - | Chr1:54106444-54106463 | MsG0180002973.01.T01:CDS | 55.0% |
| ! | TCAGCCTCAGTCGATTTCCC+AGG | + | Chr1:54106777-54106796 | None:intergenic | 55.0% |
| ! | TCCGCAAAACGGTGGCGTTT+TGG | - | Chr1:54106233-54106252 | MsG0180002973.01.T01:CDS | 55.0% |
| !! | AAGGTTGGTGCTGCTGGAGT+TGG | - | Chr1:54106552-54106571 | MsG0180002973.01.T01:CDS | 55.0% |
| !! | AGGCGGAGAATGGATTGCTG+AGG | - | Chr1:54106640-54106659 | MsG0180002973.01.T01:CDS | 55.0% |
| !! | AGGGTTGTTTTCGGGGACTG+AGG | - | Chr1:54106344-54106363 | MsG0180002973.01.T01:CDS | 55.0% |
| !! | CCGCCGTGAATTTTAGGTGG+GGG | - | Chr1:54106403-54106422 | MsG0180002973.01.T01:CDS | 55.0% |
| !! | CGCCGTGAATTTTAGGTGGG+GGG | - | Chr1:54106404-54106423 | MsG0180002973.01.T01:CDS | 55.0% |
| !! | GCCGCCGTGAATTTTAGGTG+GGG | - | Chr1:54106402-54106421 | MsG0180002973.01.T01:CDS | 55.0% |
| !! | GTTTTCGGGGACTGAGGTTG+CGG | - | Chr1:54106350-54106369 | MsG0180002973.01.T01:CDS | 55.0% |
| ACATTTGCCCGCGGAGTGTG+GGG | - | Chr1:54106506-54106525 | MsG0180002973.01.T01:CDS | 60.0% | |
| GAACATTTGCCCGCGGAGTG+TGG | - | Chr1:54106504-54106523 | MsG0180002973.01.T01:CDS | 60.0% | |
| GACTGAGGCTGATGCGAGCA+AGG | - | Chr1:54106785-54106804 | MsG0180002973.01.T01:CDS | 60.0% | |
| TAGGTGGGGGGTTAGGGTTC+CGG | - | Chr1:54106416-54106435 | MsG0180002973.01.T01:CDS | 60.0% | |
| TGAGGTTGCGGCGAGGACTA+GGG | - | Chr1:54106362-54106381 | MsG0180002973.01.T01:CDS | 60.0% | |
| TTGAGGGGAGCCACCACTGT+TGG | - | Chr1:54106822-54106841 | MsG0180002973.01.T01:CDS | 60.0% | |
| ! | AGGGCGAAAGCGCGTTTGGA+AGG | - | Chr1:54106448-54106467 | MsG0180002973.01.T01:CDS | 60.0% |
| ! | GGGCGAAAGCGCGTTTGGAA+GGG | - | Chr1:54106449-54106468 | MsG0180002973.01.T01:CDS | 60.0% |
| !! | TTGGGAAAGTGCCGTCGGCT+GGG | - | Chr1:54106313-54106332 | MsG0180002973.01.T01:CDS | 60.0% |
| ACGGCGGCACGTCCCCTAAT+CGG | + | Chr1:54106390-54106409 | None:intergenic | 65.0% | |
| CGGGGTGGAACATTTGCCCG+CGG | - | Chr1:54106497-54106516 | MsG0180002973.01.T01:CDS | 65.0% | |
| CTGAGGTTGCGGCGAGGACT+AGG | - | Chr1:54106361-54106380 | MsG0180002973.01.T01:CDS | 65.0% | |
| !! | GTTGGGAAAGTGCCGTCGGC+TGG | - | Chr1:54106312-54106331 | MsG0180002973.01.T01:CDS | 65.0% |
| !! | TGGGAAAGTGCCGTCGGCTG+GGG | - | Chr1:54106314-54106333 | MsG0180002973.01.T01:CDS | 65.0% |
| CCTGCAATCGCCCCAGCCGA+CGG | + | Chr1:54106327-54106346 | None:intergenic | 70.0% | |
| GGGGGTTAGGGTTCCGGCTG+AGG | - | Chr1:54106422-54106441 | MsG0180002973.01.T01:CDS | 70.0% | |
| ! | CGTCGGCTGGGGCGATTGCA+GGG | - | Chr1:54106325-54106344 | MsG0180002973.01.T01:CDS | 70.0% |
| CGGGGACTGAGGTTGCGGCG+AGG | - | Chr1:54106355-54106374 | MsG0180002973.01.T01:CDS | 75.0% | |
| ! | CCGTCGGCTGGGGCGATTGC+AGG | - | Chr1:54106324-54106343 | MsG0180002973.01.T01:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 54105823 | 54106851 | 54105823 | ID=MsG0180002973.01;Name=MsG0180002973.01 |
| Chr1 | mRNA | 54105823 | 54106851 | 54105823 | ID=MsG0180002973.01.T01;Parent=MsG0180002973.01;Name=MsG0180002973.01.T01;_AED=0.30;_eAED=0.30;_QI=0|-1|0|1|-1|1|1|0|342 |
| Chr1 | exon | 54105823 | 54106851 | 54105823 | ID=MsG0180002973.01.T01:exon:47851;Parent=MsG0180002973.01.T01 |
| Chr1 | CDS | 54105823 | 54106851 | 54105823 | ID=MsG0180002973.01.T01:cds;Parent=MsG0180002973.01.T01 |
| Gene Sequence |
| Protein sequence |
