AlfalfaGEDB | MsG0180005676.01

M. sativa cultivar ZhongmuNo.1 / MsG0180005676.01

KEGG: K05931
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005676.01.T01	KAG5023864.1	86.62	142	10	1	1	133	281	422	7.60E-83	261

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005676.01.T01	A2YPT7	82.09	134	22	1	2	133	363	496	3.29E-75	235

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005676.01.T01	A0A072UT92	90.370	135	11	1	1	133	348	482	9.95e-83	261

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048764.01	MsG0180005676.01	-0.812807	3.521229e-51	2.260487e-48
MsG0180000157.01	MsG0180005676.01	-0.807758	4.322649e-50	2.427766e-47
MsG0180000240.01	MsG0180005676.01	0.812230	4.706692e-51	2.975978e-48
MsG0180000669.01	MsG0180005676.01	-0.804516	2.080863e-49	1.074999e-46
MsG0180000679.01	MsG0180005676.01	-0.820017	8.563027e-53	6.697394e-50
MsG0180001712.01	MsG0180005676.01	-0.800146	1.652598e-48	7.638039e-46
MsG0180002750.01	MsG0180005676.01	0.832208	1.077981e-55	1.196607e-52
MsG0180003088.01	MsG0180005676.01	-0.827532	1.484888e-54	1.437389e-51
MsG0180003309.01	MsG0180005676.01	0.840719	7.340428e-58	1.054744e-54
MsG0180003878.01	MsG0180005676.01	0.816008	6.898410e-52	4.831051e-49
MsG0180004603.01	MsG0180005676.01	-0.801206	1.004412e-48	4.768715e-46
MsG0180005515.01	MsG0180005676.01	0.801903	7.229933e-49	3.493645e-46
MsG0180005676.01	MsG0280006683.01	0.824410	8.193601e-54	7.251145e-51
MsG0180005676.01	MsG0280010204.01	-0.831716	1.425836e-55	1.560293e-52
MsG0180005676.01	MsG0280010423.01	0.825118	5.579605e-54	5.039765e-51
MsG0180005676.01	MsG0280011059.01	0.836182	1.086792e-56	1.359320e-53
MsG0180005676.01	MsG0380011895.01	-0.810308	1.229481e-50	7.385546e-48
MsG0180005676.01	MsG0380012279.01	0.805937	1.048971e-49	5.621196e-47
MsG0180005676.01	MsG0380014551.01	0.855725	5.201181e-62	1.212384e-58
MsG0180005676.01	MsG0380014770.01	-0.813719	2.220249e-51	1.461057e-48
MsG0180005676.01	MsG0380015400.01	-0.804871	1.754330e-49	9.148006e-47
MsG0180005676.01	MsG0380016191.01	0.809758	1.615341e-50	9.565534e-48
MsG0180005676.01	MsG0380016828.01	0.851837	6.839318e-61	1.402036e-57
MsG0180005676.01	MsG0380017178.01	0.814298	1.654310e-51	1.105865e-48
MsG0180005676.01	MsG0380017226.01	-0.831239	1.868839e-55	2.015896e-52
MsG0180005676.01	MsG0380017263.01	0.822493	2.299623e-53	1.927823e-50
MsG0180005676.01	MsG0380017265.01	0.853791	1.891880e-61	4.136095e-58
MsG0180005676.01	MsG0480018906.01	-0.806702	7.236902e-50	3.954500e-47
MsG0180005676.01	MsG0480019163.01	0.858688	6.939545e-63	1.786031e-59
MsG0180005676.01	MsG0480020327.01	0.806044	9.959720e-50	5.351807e-47
MsG0180005676.01	MsG0480021490.01	0.818113	2.321979e-52	1.722544e-49
MsG0180005676.01	MsG0480021776.01	0.839738	1.324141e-57	1.845426e-54
MsG0180005676.01	MsG0480021845.01	0.810064	1.388017e-50	8.285245e-48
MsG0180005676.01	MsG0580024928.01	0.828742	7.593075e-55	7.613385e-52
MsG0180005676.01	MsG0580025453.01	-0.804797	1.817781e-49	9.460223e-47
MsG0180005676.01	MsG0580028664.01	0.800192	1.617205e-48	7.483149e-46
MsG0180005676.01	MsG0580029514.01	0.807798	4.238718e-50	2.383134e-47
MsG0180005676.01	MsG0580029999.01	0.821831	3.275622e-53	2.694688e-50
MsG0180005676.01	MsG0680031446.01	0.811701	6.137130e-51	3.825209e-48
MsG0180005676.01	MsG0680031694.01	-0.814866	1.238607e-51	8.407080e-49
MsG0180005676.01	MsG0680032510.01	0.806932	6.470721e-50	3.556963e-47
MsG0180005676.01	MsG0680035659.01	-0.802880	4.547340e-49	2.252744e-46
MsG0180005676.01	MsG0780035989.01	0.800044	1.733041e-48	7.989193e-46
MsG0180005676.01	MsG0780037082.01	-0.815084	1.108177e-51	7.566288e-49
MsG0180005676.01	MsG0780038231.01	-0.819662	1.032380e-52	7.994233e-50
MsG0180005676.01	MsG0780038309.01	0.821268	4.419325e-53	3.578175e-50
MsG0180005676.01	MsG0780038473.01	0.808812	2.576818e-50	1.487796e-47
MsG0180005676.01	MsG0780039846.01	0.819633	1.048221e-52	8.110222e-50
MsG0180005676.01	MsG0780040148.01	0.816291	5.966367e-52	4.210906e-49
MsG0180005676.01	MsG0780040566.01	0.803755	2.995912e-49	1.517848e-46
MsG0180005676.01	MsG0780040576.01	0.811207	7.856037e-51	4.833459e-48
MsG0180005676.01	MsG0780040596.01	-0.802129	6.496553e-49	3.157320e-46
MsG0180005676.01	MsG0780040929.01	-0.805215	1.486705e-49	7.820387e-47
MsG0180005676.01	MsG0880042611.01	-0.824879	6.354650e-54	5.701153e-51
MsG0180005676.01	MsG0880043456.01	-0.802239	6.164132e-49	3.004265e-46
MsG0180005676.01	MsG0880044062.01	0.854994	8.495367e-62	1.932504e-58
MsG0180005676.01	MsG0880044389.01	0.800948	1.134251e-48	5.350347e-46
MsG0180005676.01	MsG0880044455.01	0.808114	3.630585e-50	2.058261e-47
MsG0180005676.01	MsG0880045555.01	0.800267	1.561227e-48	7.238139e-46
MsG0180005676.01	MsG0880046377.01	-0.803733	3.028189e-49	1.533330e-46
MsG0180005676.01	MsG0880046384.01	0.805284	1.437728e-49	7.576035e-47
MsG0180005676.01	MsG0880047689.01	0.856480	3.127410e-62	7.475737e-59

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005676.01.T01	MTR_4g119900	90.370	135	11	1	1	133	348	482	2.52e-86	261
MsG0180005676.01.T01	MTR_4g119900	90.370	135	11	1	1	133	348	482	2.98e-86	261
MsG0180005676.01.T01	MTR_2g436780	84.444	135	19	1	1	133	350	484	1.67e-79	244
MsG0180005676.01.T01	MTR_2g436780	84.444	135	19	1	1	133	350	484	1.80e-79	243

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005676.01.T01	AT5G49020	80.000	135	25	2	1	133	357	491	6.39e-76	234
MsG0180005676.01.T01	AT5G49020	80.000	135	25	2	1	133	355	489	6.50e-76	234
MsG0180005676.01.T01	AT3G06930	78.519	135	27	2	1	133	354	488	3.30e-75	233
MsG0180005676.01.T01	AT3G06930	78.519	135	27	2	1	133	354	488	3.67e-75	232

Find 68 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGAGAAATTCACCTTATTAG+AGG	0.273514	1:+94825581	None:intergenic
GTTGTTTCTTTCCTCTAATA+AGG	0.277724	1:-94825592	MsG0180005676.01.T01:intron
TGCCCTGCCATGACATAAAT+TGG	0.284559	1:+94823195	None:intergenic
TTTCATCTTCTCTTCTCTCT+CGG	0.350151	1:-94825828	MsG0180005676.01.T01:five_prime_UTR
GTTAATGGAGGGTGTGGGTT+CGG	0.360058	1:+94825796	None:intergenic
CACATGCATGGCTTGATTCA+TGG	0.368569	1:+94825751	None:intergenic
GAGAGAGAACACAGCGTAAC+TGG	0.376141	1:+94823220	None:intergenic
TTCATCTTCTCTTCTCTCTC+GGG	0.402228	1:-94825827	MsG0180005676.01.T01:five_prime_UTR
AGTCTAGTACATGGAACATT+GGG	0.405549	1:+94823930	None:intergenic
ACAAGAGGAACAAAAGCAAA+AGG	0.412039	1:-94825674	MsG0180005676.01.T01:five_prime_UTR
TACCCTAGACATTCTATAGT+AGG	0.422608	1:+94822935	None:intergenic
ATGGCAGGGCAGGAAATTAC+CGG	0.442895	1:-94823183	MsG0180005676.01.T01:CDS
TCTGTGGGCACCAGAGTACA+TGG	0.444669	1:-94823439	MsG0180005676.01.T01:CDS
AAGTTGGTTAATGGAGGGTG+TGG	0.445919	1:+94825790	None:intergenic
CAATGGGTTGTGGGTGAACC+AGG	0.458912	1:+94823246	None:intergenic
AAACCTACTATAGAATGTCT+AGG	0.460184	1:-94822938	MsG0180005676.01.T01:CDS
TTCTGGAAGTTGGTTAATGG+AGG	0.473002	1:+94825784	None:intergenic
CAGCCAATTTATGTCATGGC+AGG	0.478417	1:-94823198	MsG0180005676.01.T01:CDS
CTGAGATTCGTTGCCTCTGT+GGG	0.478950	1:-94823454	MsG0180005676.01.T01:CDS
AACTGGTACCAATGGGTTGT+GGG	0.487071	1:+94823237	None:intergenic
AGTTGGTTAATGGAGGGTGT+GGG	0.498990	1:+94825791	None:intergenic
TAACTGGTACCAATGGGTTG+TGG	0.500539	1:+94823236	None:intergenic
AGGTGGCTTACCACTGCTCC+TGG	0.500792	1:-94823264	MsG0180005676.01.T01:CDS
TGGTTTGATGTATTATTCAA+TGG	0.507455	1:-94823406	MsG0180005676.01.T01:CDS
AATTTGCATTAGCTAAAATG+TGG	0.507483	1:-94823022	MsG0180005676.01.T01:CDS
ATTTGCATTAGCTAAAATGT+GGG	0.508569	1:-94823021	MsG0180005676.01.T01:CDS
CTCTCAGCCAATTTATGTCA+TGG	0.512314	1:-94823202	MsG0180005676.01.T01:CDS
CAAGAGGAACAAAAGCAAAA+GGG	0.512576	1:-94825673	MsG0180005676.01.T01:five_prime_UTR
CACAGCGTAACTGGTACCAA+TGG	0.512966	1:+94823229	None:intergenic
TTAGCTAAAATGTGGGGTCC+TGG	0.515230	1:-94823014	MsG0180005676.01.T01:CDS
TTGATGTATTATTCAATGGA+AGG	0.517055	1:-94823402	MsG0180005676.01.T01:intron
TGTATAACTCTGTGCATTGT+GGG	0.532737	1:+94823143	None:intergenic
TCTGGAAGTTGGTTAATGGA+GGG	0.535621	1:+94825785	None:intergenic
AATTTATGTCATGGCAGGGC+AGG	0.545671	1:-94823193	MsG0180005676.01.T01:CDS
GGCAATCAAATGAAGCCTGC+CGG	0.552822	1:+94823164	None:intergenic
ACAGCGTAACTGGTACCAAT+GGG	0.557115	1:+94823230	None:intergenic
ACATGCTAACCCATGTACTC+TGG	0.557433	1:+94823429	None:intergenic
ATCCCTCCTTGTTCAGCACC+AGG	0.558755	1:+94822996	None:intergenic
AACCTACTATAGAATGTCTA+GGG	0.560640	1:-94822937	None:intergenic
CAGGGCAGGAAATTACCGGC+AGG	0.563347	1:-94823179	MsG0180005676.01.T01:CDS
TTTACTCATAAAGCCTGTGG+TGG	0.567181	1:-94823984	MsG0180005676.01.T01:intron
ACTAGACTTCGGTAAAATGA+AGG	0.568894	1:-94823915	MsG0180005676.01.T01:intron
GATGGAAATTCCAGCACAAG+AGG	0.569721	1:-94825689	MsG0180005676.01.T01:five_prime_UTR
CTGGTTCACCCACAACCCAT+TGG	0.575343	1:-94823245	MsG0180005676.01.T01:CDS
AATGGAGGGTGTGGGTTCGG+TGG	0.576864	1:+94825799	None:intergenic
AAGTCTAGTACATGGAACAT+TGG	0.580576	1:+94823929	None:intergenic
TGGGGTCCTGGTGCTGAACA+AGG	0.580583	1:-94823002	MsG0180005676.01.T01:CDS
GTCCTGGTGCTGAACAAGGA+GGG	0.581683	1:-94822998	MsG0180005676.01.T01:CDS
AACAACAAGATTGTAGTGGA+TGG	0.586552	1:+94825609	None:intergenic
GAGTACATGGGTTAGCATGT+TGG	0.589662	1:-94823426	MsG0180005676.01.T01:CDS
AAGAAACAACAAGATTGTAG+TGG	0.592802	1:+94825605	None:intergenic
ATGTTCCATGTACTAGACTT+CGG	0.599358	1:-94823926	MsG0180005676.01.T01:CDS
TTTACAGTACTGTGCAAAGG+TGG	0.605128	1:-94823281	MsG0180005676.01.T01:intron
GGATCAAAAGCATCCACCAC+AGG	0.607130	1:+94823971	None:intergenic
TCTGAGATTCGTTGCCTCTG+TGG	0.608370	1:-94823455	MsG0180005676.01.T01:CDS
TTGTATAACTCTGTGCATTG+TGG	0.608638	1:+94823142	None:intergenic
AGCCAATTTATGTCATGGCA+GGG	0.612618	1:-94823197	MsG0180005676.01.T01:CDS
TGTGGGTGAACCAGGAGCAG+TGG	0.614255	1:+94823254	None:intergenic
TGCATGGCTTGATTCATGGA+AGG	0.629722	1:+94825755	None:intergenic
AACGAATTACTACACATGCA+TGG	0.631642	1:+94825739	None:intergenic
AAATTTACAGTACTGTGCAA+AGG	0.643039	1:-94823284	MsG0180005676.01.T01:intron
GGTCCTGGTGCTGAACAAGG+AGG	0.649183	1:-94822999	MsG0180005676.01.T01:CDS
GTCTAGTACATGGAACATTG+GGG	0.653840	1:+94823931	None:intergenic
TTTGCATTAGCTAAAATGTG+GGG	0.656381	1:-94823020	MsG0180005676.01.T01:CDS
CTGTGGGCACCAGAGTACAT+GGG	0.665289	1:-94823438	MsG0180005676.01.T01:CDS
ACAGAGGCAACGAATCTCAG+AGG	0.711441	1:+94823457	None:intergenic
TCTAGTACATGGAACATTGG+GGG	0.721365	1:+94823932	None:intergenic
ATGTACTCTGGTGCCCACAG+AGG	0.744859	1:+94823441	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TATAAATTGTTAAAAAGAAT+AGG	-	Chr1:94823431-94823450	MsG0180005676.01.T01:CDS	10.0%
!!	TATTAAAATAAATCTAATGA+TGG	+	Chr1:94824994-94825013	None:intergenic	10.0%
!!	AAAATCAATTGAAGAAAAAT+TGG	-	Chr1:94823128-94823147	MsG0180005676.01.T01:intron	15.0%
!!	ATTATCAAATCAAAATTAGA+AGG	+	Chr1:94823594-94823613	None:intergenic	15.0%
!!!	ACTTATTGTATTTTTTTTTG+TGG	-	Chr1:94825020-94825039	MsG0180005676.01.T01:intron	15.0%
!!	AAACAAAACAAACAAAATCA+TGG	+	Chr1:94823402-94823421	None:intergenic	20.0%
!!	ACAATATATTTAACATTGTC+TGG	-	Chr1:94825655-94825674	MsG0180005676.01.T01:five_prime_UTR	20.0%
!!	ACAGATGATTTAGTAATTAT+AGG	+	Chr1:94823539-94823558	None:intergenic	20.0%
!!	ATATCATTACTTTGTACAAA+TGG	-	Chr1:94825164-94825183	MsG0180005676.01.T01:intron	20.0%
!!	CAGATGATTTAGTAATTATA+GGG	+	Chr1:94823538-94823557	None:intergenic	20.0%
!!	TTAGTAACTAAAGTTCAATT+TGG	+	Chr1:94824737-94824756	None:intergenic	20.0%
!!!	TAACAAGTTTTTATTCAACT+AGG	-	Chr1:94825429-94825448	MsG0180005676.01.T01:intron	20.0%
!!!	TAAGCTTCAATTTTAGAAAT+GGG	-	Chr1:94823223-94823242	MsG0180005676.01.T01:CDS	20.0%
!!!	TGATGATCATTGTATTTTTT+TGG	-	Chr1:94825053-94825072	MsG0180005676.01.T01:intron	20.0%
!!!	TTAAGCTTCAATTTTAGAAA+TGG	-	Chr1:94823222-94823241	MsG0180005676.01.T01:CDS	20.0%
!	AAATCTCTGATTGTAAGATA+AGG	+	Chr1:94824520-94824539	None:intergenic	25.0%
!	AATTTGCATTAGCTAAAATG+TGG	-	Chr1:94825756-94825775	MsG0180005676.01.T01:five_prime_UTR	25.0%
!	AGACTTTATTACTAATGAAG+AGG	+	Chr1:94825410-94825429	None:intergenic	25.0%
!	ATAGGTTTAATCTTAGAGTT+TGG	-	Chr1:94823449-94823468	MsG0180005676.01.T01:CDS	25.0%
!	ATATAGCTTAAAACCCTAAT+AGG	-	Chr1:94823292-94823311	MsG0180005676.01.T01:intron	25.0%
!	ATTTGCATTAGCTAAAATGT+GGG	-	Chr1:94825757-94825776	MsG0180005676.01.T01:five_prime_UTR	25.0%
!	CCAAAATCTACTCTTAAATT+GGG	+	Chr1:94824474-94824493	None:intergenic	25.0%
!	CTGATGGAAATGTTATATAA+TGG	-	Chr1:94824630-94824649	MsG0180005676.01.T01:intron	25.0%
!	TATATTTAACATTGTCTGGT+TGG	-	Chr1:94825659-94825678	MsG0180005676.01.T01:five_prime_UTR	25.0%
!	TCCAAAATCTACTCTTAAAT+TGG	+	Chr1:94824475-94824494	None:intergenic	25.0%
!	TGGTTTGATGTATTATTCAA+TGG	-	Chr1:94825372-94825391	MsG0180005676.01.T01:intron	25.0%
!	TTGATGTATTATTCAATGGA+AGG	-	Chr1:94825376-94825395	MsG0180005676.01.T01:intron	25.0%
!!	ATCATTATTGAGTTGTTCTT+TGG	-	Chr1:94825087-94825106	MsG0180005676.01.T01:intron	25.0%
!!	CAAGACAATTAGTTTCAAAA+AGG	+	Chr1:94824366-94824385	None:intergenic	25.0%
!!	CTTTAGTGATATATAGCTTT+TGG	-	Chr1:94824326-94824345	MsG0180005676.01.T01:intron	25.0%
!!	TGAAGAAAAATTGGAGTTTT+AGG	-	Chr1:94823137-94823156	MsG0180005676.01.T01:intron	25.0%
!!	TTTATTCCTGTATTTTACGT+AGG	-	Chr1:94824918-94824937	MsG0180005676.01.T01:intron	25.0%
!!!	AAAAAGCCATCTTTTATTTC+TGG	-	Chr1:94825137-94825156	MsG0180005676.01.T01:intron	25.0%
!!!	AGTTTGCTATATGTATATTC+TGG	-	Chr1:94824181-94824200	MsG0180005676.01.T01:intron	25.0%
!!!	ATCATTGTATTTTTTTGGAC+TGG	-	Chr1:94825058-94825077	MsG0180005676.01.T01:intron	25.0%
!!!	TTGAAGTATTGACAATCTAT+AGG	+	Chr1:94823680-94823699	None:intergenic	25.0%
	AAACCTACTATAGAATGTCT+AGG	-	Chr1:94825840-94825859	MsG0180005676.01.T01:five_prime_UTR	30.0%
	AAATGACCTACGTAAAATAC+AGG	+	Chr1:94824927-94824946	None:intergenic	30.0%
	AAATTTACAGTACTGTGCAA+AGG	-	Chr1:94825494-94825513	MsG0180005676.01.T01:intron	30.0%
	AACAATAAAACTAACTGGTC+AGG	+	Chr1:94823963-94823982	None:intergenic	30.0%
	AACTAGCAACATTATATCAC+AGG	+	Chr1:94824555-94824574	None:intergenic	30.0%
	AAGAAACAACAAGATTGTAG+TGG	+	Chr1:94823176-94823195	None:intergenic	30.0%
	ACTAGCAACATTATATCACA+GGG	+	Chr1:94824554-94824573	None:intergenic	30.0%
	ATTACATAGAGATGTCACAT+AGG	-	Chr1:94824657-94824676	MsG0180005676.01.T01:intron	30.0%
	CATTCGTAAAATAGACAACT+CGG	+	Chr1:94823818-94823837	None:intergenic	30.0%
	GGAAACTAAGATTCTTTCTT+AGG	-	Chr1:94823244-94823263	MsG0180005676.01.T01:CDS	30.0%
	GTGTTCTTGTTGCTAATATT+TGG	-	Chr1:94823332-94823351	MsG0180005676.01.T01:intron	30.0%
	TACAGGAATAAAACACTCTT+AGG	+	Chr1:94824910-94824929	None:intergenic	30.0%
	TGAGAAATTCACCTTATTAG+AGG	+	Chr1:94823200-94823219	None:intergenic	30.0%
	TTGATAGAAAATTGTTGACG+CGG	-	Chr1:94823861-94823880	MsG0180005676.01.T01:intron	30.0%
	TTGTACAAATGGTCTATTGT+TGG	-	Chr1:94825175-94825194	MsG0180005676.01.T01:intron	30.0%
	TTTATTGCTATACTAGCATG+AGG	-	Chr1:94825704-94825723	MsG0180005676.01.T01:five_prime_UTR	30.0%
	TTTGCATTAGCTAAAATGTG+GGG	-	Chr1:94825758-94825777	MsG0180005676.01.T01:five_prime_UTR	30.0%
!	ACTTTGGTGAGGTTTTTAAT+TGG	-	Chr1:94824224-94824243	MsG0180005676.01.T01:intron	30.0%
!	AGCATTGAAAGAATAGCATA+AGG	+	Chr1:94825224-94825243	None:intergenic	30.0%
!	CAACACCAGTTCATTTATTT+TGG	-	Chr1:94824100-94824119	MsG0180005676.01.T01:intron	30.0%
!	CCCAATTTAAGAGTAGATTT+TGG	-	Chr1:94824471-94824490	MsG0180005676.01.T01:intron	30.0%
!	GTATAAACCATGTGTGTTTT+TGG	-	Chr1:94823765-94823784	MsG0180005676.01.T01:intron	30.0%
!	GTATTTTACGTAGGTCATTT+TGG	-	Chr1:94824927-94824946	MsG0180005676.01.T01:intron	30.0%
!	GTTTAGTTTCTGTTGTTTGT+GGG	-	Chr1:94824135-94824154	MsG0180005676.01.T01:intron	30.0%
!	TCGTTTCTTTTCATCTCTTT+TGG	-	Chr1:94823057-94823076	MsG0180005676.01.T01:intron	30.0%
!	TGTTTAGTTTCTGTTGTTTG+TGG	-	Chr1:94824134-94824153	MsG0180005676.01.T01:intron	30.0%
!!	CTTTGGTGAGGTTTTTAATT+GGG	-	Chr1:94824225-94824244	MsG0180005676.01.T01:intron	30.0%
!!	GTTGTTTCTTTCCTCTAATA+AGG	-	Chr1:94823186-94823205	MsG0180005676.01.T01:CDS	30.0%
!!	TTTGGTGAGGTTTTTAATTG+GGG	-	Chr1:94824226-94824245	MsG0180005676.01.T01:intron	30.0%
!!!	ACCAGTTCATTTATTTTGGT+AGG	-	Chr1:94824104-94824123	MsG0180005676.01.T01:intron	30.0%
!!!	ATTGTTGGGTGTTGTTTTTT+GGG	-	Chr1:94823977-94823996	MsG0180005676.01.T01:intron	30.0%
!!!	CCAGTTCATTTATTTTGGTA+GGG	-	Chr1:94824105-94824124	MsG0180005676.01.T01:intron	30.0%
!!!	GACCAGTTAGTTTTATTGTT+GGG	-	Chr1:94823963-94823982	MsG0180005676.01.T01:five_prime_UTR	30.0%
!!!	TATTGTTGGGTGTTGTTTTT+TGG	-	Chr1:94823976-94823995	MsG0180005676.01.T01:intron	30.0%
!!!	TGACCAGTTAGTTTTATTGT+TGG	-	Chr1:94823962-94823981	MsG0180005676.01.T01:five_prime_UTR	30.0%
!!!	TTTTTTACTCATAAAGCCTG+TGG	-	Chr1:94824791-94824810	MsG0180005676.01.T01:intron	30.0%
	AACGAATTACTACACATGCA+TGG	+	Chr1:94823042-94823061	None:intergenic	35.0%
	AAGAACACTAAACCACTAAC+AGG	+	Chr1:94823320-94823339	None:intergenic	35.0%
	AAGTCTAGTACATGGAACAT+TGG	+	Chr1:94824852-94824871	None:intergenic	35.0%
	ACAAGAGGAACAAAAGCAAA+AGG	-	Chr1:94823104-94823123	MsG0180005676.01.T01:intron	35.0%
	ACTAGACTTCGGTAAAATGA+AGG	-	Chr1:94824863-94824882	MsG0180005676.01.T01:intron	35.0%
	AGAACACTAAACCACTAACA+GGG	+	Chr1:94823319-94823338	None:intergenic	35.0%
	AGTCTAGTACATGGAACATT+GGG	+	Chr1:94824851-94824870	None:intergenic	35.0%
	ATCCAGCCAGAAATAAAAGA+TGG	+	Chr1:94825146-94825165	None:intergenic	35.0%
	ATGTTCCATGTACTAGACTT+CGG	-	Chr1:94824852-94824871	MsG0180005676.01.T01:intron	35.0%
	CAACACTCAACATTGTGTAT+TGG	+	Chr1:94823717-94823736	None:intergenic	35.0%
	CAAGAGGAACAAAAGCAAAA+GGG	-	Chr1:94823105-94823124	MsG0180005676.01.T01:intron	35.0%
	CACCCAACAATAAAACTAAC+TGG	+	Chr1:94823968-94823987	None:intergenic	35.0%
	CCCTACCAAAATAAATGAAC+TGG	+	Chr1:94824108-94824127	None:intergenic	35.0%
	CTATGTAAGTGAACACAATG+TGG	+	Chr1:94824602-94824621	None:intergenic	35.0%
	GAGTTTGGATTTAATGTGCA+TGG	-	Chr1:94823464-94823483	MsG0180005676.01.T01:CDS	35.0%
	GTGATCTGGTCAAAATTCAT+TGG	+	Chr1:94825260-94825279	None:intergenic	35.0%
	TATGTCTGCGTAATGTAATG+TGG	-	Chr1:94824402-94824421	MsG0180005676.01.T01:intron	35.0%
	TGCAACCAACAAAAACAGTT+GGG	+	Chr1:94824070-94824089	None:intergenic	35.0%
	TGTATAACTCTGTGCATTGT+GGG	+	Chr1:94825638-94825657	None:intergenic	35.0%
	TTACATAGCTCTCAATCTGA+TGG	-	Chr1:94824614-94824633	MsG0180005676.01.T01:intron	35.0%
	TTGTATAACTCTGTGCATTG+TGG	+	Chr1:94825639-94825658	None:intergenic	35.0%
	TTTCATCTTCTCTTCTCTCT+CGG	-	Chr1:94822950-94822969	MsG0180005676.01.T01:CDS	35.0%
!	AACAACAAGATTGTAGTGGA+TGG	+	Chr1:94823172-94823191	None:intergenic	35.0%
!	CGAGTTGTCTATTTTACGAA+TGG	-	Chr1:94823816-94823835	MsG0180005676.01.T01:intron	35.0%
!	GCGTCAACAATTTTCTATCA+AGG	+	Chr1:94823862-94823881	None:intergenic	35.0%
!	GTCTATTTTACGAATGGTGT+TGG	-	Chr1:94823822-94823841	MsG0180005676.01.T01:intron	35.0%
!	GTTGTTAGCTTCTGTTTATG+CGG	-	Chr1:94823907-94823926	MsG0180005676.01.T01:intron	35.0%
!	TTTCTATCAAGGCACTCAAA+AGG	+	Chr1:94823851-94823870	None:intergenic	35.0%
!	TTTTACCGAAGTCTAGTACA+TGG	+	Chr1:94824860-94824879	None:intergenic	35.0%
!!	CTTTTCTGGAAGTTGGTTAA+TGG	+	Chr1:94823000-94823019	None:intergenic	35.0%
!!!	CTCTTTTGGTTGATAGAAGA+TGG	-	Chr1:94823071-94823090	MsG0180005676.01.T01:intron	35.0%
!!!	TAAACCATGTGTGTTTTTGG+AGG	-	Chr1:94823768-94823787	MsG0180005676.01.T01:intron	35.0%
	AGCCAATTTATGTCATGGCA+GGG	-	Chr1:94825581-94825600	MsG0180005676.01.T01:intron	40.0%
	CAGATCACTCTTTGTTCTGT+AGG	-	Chr1:94825272-94825291	MsG0180005676.01.T01:intron	40.0%
	CTACAGAACAAAGAGTGATC+TGG	+	Chr1:94825274-94825293	None:intergenic	40.0%
	CTCTCAGCCAATTTATGTCA+TGG	-	Chr1:94825576-94825595	MsG0180005676.01.T01:intron	40.0%
	CTGCAACCAACAAAAACAGT+TGG	+	Chr1:94824071-94824090	None:intergenic	40.0%
	GCAACCAACAAAAACAGTTG+GGG	+	Chr1:94824069-94824088	None:intergenic	40.0%
	GTCTAGTACATGGAACATTG+GGG	+	Chr1:94824850-94824869	None:intergenic	40.0%
	TCACATAGGCAGAACTCTTA+CGG	-	Chr1:94824671-94824690	MsG0180005676.01.T01:intron	40.0%
	TCTAGTACATGGAACATTGG+GGG	+	Chr1:94824849-94824868	None:intergenic	40.0%
	TTCATCTTCTCTTCTCTCTC+GGG	-	Chr1:94822951-94822970	MsG0180005676.01.T01:CDS	40.0%
	TTTACAGTACTGTGCAAAGG+TGG	-	Chr1:94825497-94825516	MsG0180005676.01.T01:intron	40.0%
	TTTACTCATAAAGCCTGTGG+TGG	-	Chr1:94824794-94824813	MsG0180005676.01.T01:intron	40.0%
!	AATTGGGGTGTTACGCATAT+TGG	-	Chr1:94824241-94824260	MsG0180005676.01.T01:intron	40.0%
!	GGTCTGCATTTGTGGTTTTT+GGG	-	Chr1:94824006-94824025	MsG0180005676.01.T01:intron	40.0%
!	TCTGGAAGTTGGTTAATGGA+GGG	+	Chr1:94822996-94823015	None:intergenic	40.0%
!	TTCATGGAAGGAAGCTTTTC+TGG	+	Chr1:94823014-94823033	None:intergenic	40.0%
!	TTCTGGAAGTTGGTTAATGG+AGG	+	Chr1:94822997-94823016	None:intergenic	40.0%
!!	AAGGAAGCTTTTCTGGAAGT+TGG	+	Chr1:94823007-94823026	None:intergenic	40.0%
!!	TGCATTTGTGGTTTTTGGGA+AGG	-	Chr1:94824010-94824029	MsG0180005676.01.T01:intron	40.0%
!!!	AGCCATCTTTTATTTCTGGC+TGG	-	Chr1:94825141-94825160	MsG0180005676.01.T01:intron	40.0%
!!!	GTGTTGTTTTTTGGGCTGAT+GGG	-	Chr1:94823985-94824004	MsG0180005676.01.T01:intron	40.0%
	AATTTATGTCATGGCAGGGC+AGG	-	Chr1:94825585-94825604	MsG0180005676.01.T01:intron	45.0%
	ACAGCGTAACTGGTACCAAT+GGG	+	Chr1:94825551-94825570	None:intergenic	45.0%
	ACATGCTAACCCATGTACTC+TGG	+	Chr1:94825352-94825371	None:intergenic	45.0%
	ACCACTAACAGGGACCTATT+AGG	+	Chr1:94823309-94823328	None:intergenic	45.0%
	AGCTTCTGTTTATGCGGTCT+AGG	-	Chr1:94823913-94823932	MsG0180005676.01.T01:intron	45.0%
	ATTGCTTGTGGCAGAGACTT+TGG	-	Chr1:94824208-94824227	MsG0180005676.01.T01:intron	45.0%
	CACATGCATGGCTTGATTCA+TGG	+	Chr1:94823030-94823049	None:intergenic	45.0%
	CAGCCAATTTATGTCATGGC+AGG	-	Chr1:94825580-94825599	MsG0180005676.01.T01:intron	45.0%
	CCACTAACAGGGACCTATTA+GGG	+	Chr1:94823308-94823327	None:intergenic	45.0%
	GATGGAAATTCCAGCACAAG+AGG	-	Chr1:94823089-94823108	MsG0180005676.01.T01:intron	45.0%
	TATTCTGGCCTCATTGCTTG+TGG	-	Chr1:94824196-94824215	MsG0180005676.01.T01:intron	45.0%
	TGCATGGCTTGATTCATGGA+AGG	+	Chr1:94823026-94823045	None:intergenic	45.0%
	TGCCCTGCCATGACATAAAT+TGG	+	Chr1:94825586-94825605	None:intergenic	45.0%
	TTAGCTAAAATGTGGGGTCC+TGG	-	Chr1:94825764-94825783	MsG0180005676.01.T01:five_prime_UTR	45.0%
	TTGTTGACGCGGTAAAGACT+TGG	-	Chr1:94823872-94823891	MsG0180005676.01.T01:intron	45.0%
!	AAGTTGGTTAATGGAGGGTG+TGG	+	Chr1:94822991-94823010	None:intergenic	45.0%
!	AGTTGGTTAATGGAGGGTGT+GGG	+	Chr1:94822990-94823009	None:intergenic	45.0%
!	GGGTCTGCATTTGTGGTTTT+TGG	-	Chr1:94824005-94824024	MsG0180005676.01.T01:intron	45.0%
!	TGCTTTTGTTCCTCTTGTGC+TGG	+	Chr1:94823102-94823121	None:intergenic	45.0%
!	TTCTGTTGTTTGTGGGAGTG+AGG	-	Chr1:94824142-94824161	MsG0180005676.01.T01:intron	45.0%
!!	AACTGGTACCAATGGGTTGT+GGG	+	Chr1:94825544-94825563	None:intergenic	45.0%
!!	GAGTACATGGGTTAGCATGT+TGG	-	Chr1:94825352-94825371	MsG0180005676.01.T01:intron	45.0%
!!	TAACTGGTACCAATGGGTTG+TGG	+	Chr1:94825545-94825564	None:intergenic	45.0%
!!!	ACCATGTGTGTTTTTGGAGG+TGG	-	Chr1:94823771-94823790	MsG0180005676.01.T01:intron	45.0%
!!!	CCATGTGTGTTTTTGGAGGT+GGG	-	Chr1:94823772-94823791	MsG0180005676.01.T01:intron	45.0%
!!!	CTGTCCCCAACTGTTTTTGT+TGG	-	Chr1:94824062-94824081	MsG0180005676.01.T01:intron	45.0%
!!!	GGTGTTGTTTTTTGGGCTGA+TGG	-	Chr1:94823984-94824003	MsG0180005676.01.T01:intron	45.0%
!!!	GTGGGTTTTGAGTAGGATGT+CGG	-	Chr1:94823790-94823809	MsG0180005676.01.T01:intron	45.0%
!!!	TTTGGAGGTGGGTTTTGAGT+AGG	-	Chr1:94823783-94823802	MsG0180005676.01.T01:intron	45.0%
	ACAGAGGCAACGAATCTCAG+AGG	+	Chr1:94825324-94825343	None:intergenic	50.0%
	AGTCTCTGCCACAAGCAATG+AGG	+	Chr1:94824207-94824226	None:intergenic	50.0%
	ATGGCAGGGCAGGAAATTAC+CGG	-	Chr1:94825595-94825614	MsG0180005676.01.T01:five_prime_UTR	50.0%
	CACAGCGTAACTGGTACCAA+TGG	+	Chr1:94825552-94825571	None:intergenic	50.0%
	CCCACCTCCAAAAACACACA+TGG	+	Chr1:94823775-94823794	None:intergenic	50.0%
	CCCTAATAGGTCCCTGTTAG+TGG	-	Chr1:94823305-94823324	MsG0180005676.01.T01:intron	50.0%
	CTGAGATTCGTTGCCTCTGT+GGG	-	Chr1:94825324-94825343	MsG0180005676.01.T01:intron	50.0%
	GAGAGAGAACACAGCGTAAC+TGG	+	Chr1:94825561-94825580	None:intergenic	50.0%
	GGCAATCAAATGAAGCCTGC+CGG	+	Chr1:94825617-94825636	None:intergenic	50.0%
	GGGGGAGCTATTAGCAAACT+TGG	+	Chr1:94824831-94824850	None:intergenic	50.0%
	TGTTTATGCGGTCTAGGCAG+TGG	-	Chr1:94823919-94823938	MsG0180005676.01.T01:CDS	50.0%
	TTGTGGCAGAGACTTTGGTG+AGG	-	Chr1:94824213-94824232	MsG0180005676.01.T01:intron	50.0%
!	GTTAATGGAGGGTGTGGGTT+CGG	+	Chr1:94822985-94823004	None:intergenic	50.0%
!	TCTGAGATTCGTTGCCTCTG+TGG	-	Chr1:94825323-94825342	MsG0180005676.01.T01:intron	50.0%
!	TGGGGTGTTACGCATATTGG+CGG	-	Chr1:94824244-94824263	MsG0180005676.01.T01:intron	50.0%
!!	GCAAGAAGCACTAAAGCTCG+CGG	+	Chr1:94824292-94824311	None:intergenic	50.0%
!!	GGATCAAAAGCATCCACCAC+AGG	+	Chr1:94824810-94824829	None:intergenic	50.0%
	AGCAAGCACACACACACAGC+AGG	+	Chr1:94824044-94824063	None:intergenic	55.0%
	ATCCCTCCTTGTTCAGCACC+AGG	+	Chr1:94825785-94825804	None:intergenic	55.0%
	ATGTACTCTGGTGCCCACAG+AGG	+	Chr1:94825340-94825359	None:intergenic	55.0%
	CGGTAAAGACTTGGCAGCAG+TGG	-	Chr1:94823881-94823900	MsG0180005676.01.T01:intron	55.0%
	CTGGTTCACCCACAACCCAT+TGG	-	Chr1:94825533-94825552	MsG0180005676.01.T01:intron	55.0%
	CTGTGGGCACCAGAGTACAT+GGG	-	Chr1:94825340-94825359	MsG0180005676.01.T01:intron	55.0%
	TCTGTGGGCACCAGAGTACA+TGG	-	Chr1:94825339-94825358	MsG0180005676.01.T01:intron	55.0%
	TTATGCGGTCTAGGCAGTGG+TGG	-	Chr1:94823922-94823941	MsG0180005676.01.T01:CDS	55.0%
!	GGCTGATGGGTCTGCATTTG+TGG	-	Chr1:94823998-94824017	MsG0180005676.01.T01:intron	55.0%
!	GTCCTGGTGCTGAACAAGGA+GGG	-	Chr1:94825780-94825799	MsG0180005676.01.T01:five_prime_UTR	55.0%
!!	CAATGGGTTGTGGGTGAACC+AGG	+	Chr1:94825535-94825554	None:intergenic	55.0%
!!	GTGGTTTTTGGGAAGGCCTG+AGG	-	Chr1:94824017-94824036	MsG0180005676.01.T01:intron	55.0%
	AGGTGGCTTACCACTGCTCC+TGG	-	Chr1:94825514-94825533	MsG0180005676.01.T01:intron	60.0%
	CACACACACAGCAGGACCTC+AGG	+	Chr1:94824036-94824055	None:intergenic	60.0%
	CAGGGCAGGAAATTACCGGC+AGG	-	Chr1:94825599-94825618	MsG0180005676.01.T01:five_prime_UTR	60.0%
	GCACTAAAGCTCGCGGCGAA+AGG	+	Chr1:94824285-94824304	None:intergenic	60.0%
	TGTGGGTGAACCAGGAGCAG+TGG	+	Chr1:94825527-94825546	None:intergenic	60.0%
!	AATGGAGGGTGTGGGTTCGG+TGG	+	Chr1:94822982-94823001	None:intergenic	60.0%
!	CGGTCTAGGCAGTGGTGGAA+TGG	-	Chr1:94823927-94823946	MsG0180005676.01.T01:CDS	60.0%
!	GGTCCTGGTGCTGAACAAGG+AGG	-	Chr1:94825779-94825798	MsG0180005676.01.T01:five_prime_UTR	60.0%
!	TGGGGTCCTGGTGCTGAACA+AGG	-	Chr1:94825776-94825795	MsG0180005676.01.T01:five_prime_UTR	60.0%

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	94822938	94825862	94822938	ID=MsG0180005676.01;Name=MsG0180005676.01
Chr1	mRNA	94822938	94825862	94822938	ID=MsG0180005676.01.T01;Parent=MsG0180005676.01;Name=MsG0180005676.01.T01;_AED=0.41;_eAED=0.43;_QI=315\|0.75\|0.6\|1\|0\|0\|5\|0\|133
Chr1	exon	94822938	94823053	94822938	ID=MsG0180005676.01.T01:exon:19259;Parent=MsG0180005676.01.T01
Chr1	exon	94823151	94823296	94823151	ID=MsG0180005676.01.T01:exon:19258;Parent=MsG0180005676.01.T01
Chr1	exon	94823403	94823506	94823403	ID=MsG0180005676.01.T01:exon:19257;Parent=MsG0180005676.01.T01
Chr1	exon	94823916	94823993	94823916	ID=MsG0180005676.01.T01:exon:19256;Parent=MsG0180005676.01.T01
Chr1	exon	94825593	94825862	94825593	ID=MsG0180005676.01.T01:exon:19255;Parent=MsG0180005676.01.T01
Chr1	five_prime_UTR	94825593	94825862	94825593	ID=MsG0180005676.01.T01:five_prime_utr;Parent=MsG0180005676.01.T01
Chr1	five_prime_UTR	94823949	94823993	94823949	ID=MsG0180005676.01.T01:five_prime_utr;Parent=MsG0180005676.01.T01
Chr1	CDS	94823916	94823948	94823916	ID=MsG0180005676.01.T01:cds;Parent=MsG0180005676.01.T01
Chr1	CDS	94823403	94823506	94823403	ID=MsG0180005676.01.T01:cds;Parent=MsG0180005676.01.T01
Chr1	CDS	94823151	94823296	94823151	ID=MsG0180005676.01.T01:cds;Parent=MsG0180005676.01.T01
Chr1	CDS	94822938	94823053	94822938	ID=MsG0180005676.01.T01:cds;Parent=MsG0180005676.01.T01

Gene Sequence

>MsG0180005676.01.T01

ATGTTCCATGTACTAGACTTCGGTAAAATGAAGGAAGAAGAATTGTATGAAATTGACATTCCTCTGAGATTCGTTGCCTCTGTGGGCACCAGAGTACATGGGTTAGCATGTTGGTTTGATGTATTATTCAATGGAAGTACTGTGCAAAGGTGGCTTACCACTGCTCCTGGTTCACCCACAACCCATTGGTACCAGTTACGCTGTGTTCTCTCTCAGCCAATTTATGTCATGGCAGGGCAGGAAATTACCGGCAGGCTTCATTTGATTGCCCACAATGCACAGAAAAAATTTAAATTTGCATTAGCTAAAATGTGGGGTCCTGGTGCTGAACAAGGAGGGATTCTTCAAACATCTTCTTGTAAGCTTGATCTGAAAGAAACCTACTATAGAATGTCTAGG

Protein sequence

>MsG0180005676.01.T01

MFHVLDFGKMKEEELYEIDIPLRFVASVGTRVHGLACWFDVLFNGSTVQRWLTTAPGSPTTHWYQLRCVLSQPIYVMAGQEITGRLHLIAHNAQKKFKFALAKMWGPGAEQGGILQTSSCKLDLKETYYRMSR