AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003416.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003416.01.T01 MTR_1g061240 82.857 245 22 3 1 232 1 238 7.58e-124 356
MsG0180003416.01.T01 MTR_4g094512 25.974 231 157 7 12 232 68 294 4.40e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003416.01.T01 AT3G52940 64.407 236 64 3 1 223 1 229 2.33e-91 270
MsG0180003416.01.T01 AT3G52940 62.857 245 71 3 1 232 1 238 3.14e-89 268
MsG0180003416.01.T01 AT1G50430 25.410 244 157 8 7 232 52 288 1.30e-12 67.0
MsG0180003416.01.T01 AT1G50430 24.691 243 159 8 7 232 52 287 2.00e-11 63.5

Find 41 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGTTGGTTGGACTTCTT+TGG 0.188039 1:-62029732 MsG0180003416.01.T01:CDS
TGTGACTTTGATTTAATTTC+AGG 0.198998 1:+62030157 None:intergenic
CTGGGCTTCATGTTGGTCTT+TGG 0.206094 1:-62026739 MsG0180003416.01.T01:CDS
TTTATCTGCTTGTTTATTAC+TGG 0.214054 1:-62029080 MsG0180003416.01.T01:CDS
ACCTGTATGCTAAAAGTAAA+AGG 0.303182 1:+62026700 None:intergenic
CTCCCTGGAAAACTTGTTCC+TGG 0.318819 1:-62029898 MsG0180003416.01.T01:CDS
TTTACTTACTTAGCCATTGT+TGG 0.353187 1:-62029928 MsG0180003416.01.T01:CDS
GGACATAATTGCAGAGAGAC+TGG 0.385924 1:-62026758 MsG0180003416.01.T01:CDS
ATCTGTTATAATTACGAACT+TGG 0.409396 1:-62026677 MsG0180003416.01.T01:CDS
ACAACTAAATCCTCAGTTCA+TGG 0.413367 1:-62027718 MsG0180003416.01.T01:CDS
TGCAGAGAGTGACAAGGACT+TGG 0.416319 1:+62030200 None:intergenic
AGATTACTGCATTGAATAGC+TGG 0.418780 1:+62027394 None:intergenic
CATAGTGTCACACATGGATC+TGG 0.450093 1:-62030110 MsG0180003416.01.T01:exon
GAGTGACAAGGACTTGGGTA+TGG 0.466726 1:+62030206 None:intergenic
CTTCGTTAGAGCTGGAATGA+TGG 0.474076 1:-62027493 MsG0180003416.01.T01:CDS
TTCGTTAGAGCTGGAATGAT+GGG 0.485811 1:-62027492 MsG0180003416.01.T01:CDS
CTCAAGTCCTCTATCTGCTA+TGG 0.491143 1:+62029158 None:intergenic
AGAGAGACTGGGCTTCATGT+TGG 0.500579 1:-62026746 MsG0180003416.01.T01:CDS
AGGAGATACAAATTCCATCT+TGG 0.528581 1:+62029702 None:intergenic
CGTCTTCATTATCGCTGCAA+TGG 0.528597 1:-62029853 MsG0180003416.01.T01:intron
GGTCAGGTTGCTTTACTCGC+GGG 0.534389 1:-62029955 MsG0180003416.01.T01:intron
TTTGTTCCAGCTATACATCC+TGG 0.535536 1:-62027296 MsG0180003416.01.T01:intron
GAACTAACGGAGTTCCATGA+TGG 0.541770 1:+62030064 None:intergenic
ATTGTTGGATCCATTCTCCC+TGG 0.544374 1:-62029913 MsG0180003416.01.T01:CDS
TTCACGCTCTAATTCCATCA+TGG 0.548482 1:-62030078 MsG0180003416.01.T01:CDS
TCTTTGGATCAGTGCCAAGA+TGG 0.550638 1:-62029716 MsG0180003416.01.T01:CDS
TTGCAGGCCATAGCAGATAG+AGG 0.552413 1:-62029165 MsG0180003416.01.T01:intron
AGTGACAAGGACTTGGGTAT+GGG 0.554075 1:+62030207 None:intergenic
GGGTCAGGTTGCTTTACTCG+CGG 0.558732 1:-62029956 MsG0180003416.01.T01:intron
CAACTAAATCCTCAGTTCAT+GGG 0.563695 1:-62027717 MsG0180003416.01.T01:CDS
GACATAATTGCAGAGAGACT+GGG 0.564561 1:-62026757 MsG0180003416.01.T01:CDS
CTTCGTGTACAAAGTAGTCC+AGG 0.580566 1:+62027278 None:intergenic
TGGTCTTTGGAGATCTAGTG+TGG 0.590293 1:-62026726 MsG0180003416.01.T01:CDS
CTTGCTAAGAGCATTCAAGA+TGG 0.591306 1:-62027444 MsG0180003416.01.T01:CDS
GCAGAGAGTGACAAGGACTT+GGG 0.601047 1:+62030201 None:intergenic
TTAGAGCTGGAATGATGGGA+TGG 0.630099 1:-62027488 MsG0180003416.01.T01:CDS
AGGGAGAATGGATCCAACAA+TGG 0.644188 1:+62029915 None:intergenic
GAATCAGAGAGAACAACACC+AGG 0.654584 1:+62029880 None:intergenic
CTATGTTGCAGAGAGTGACA+AGG 0.659719 1:+62030194 None:intergenic
AAACTGCATAGTGTCACACA+TGG 0.688567 1:-62030116 MsG0180003416.01.T01:exon
AGGTCAATACCCATGAACTG+AGG 0.703276 1:+62027708 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGATTGAATTAAAGAAA+TGG + Chr1:62026906-62026925 None:intergenic 15.0%
!! AATGATTGAATTAAAGAAAT+GGG + Chr1:62026905-62026924 None:intergenic 15.0%
!! CTTAGTAAAAAAATCAAATT+AGG - Chr1:62029854-62029873 MsG0180003416.01.T01:CDS 15.0%
!! TAAAAAAATCAAATTAGGTT+TGG - Chr1:62029859-62029878 MsG0180003416.01.T01:CDS 15.0%
!!! ACTTTATTTGCATTTTTTTA+AGG - Chr1:62027161-62027180 MsG0180003416.01.T01:intron 15.0%
!!! ATATAAACACAATTTTTTCA+GGG + Chr1:62029138-62029157 None:intergenic 15.0%
!!! CATTTTTTTCAAATTTGAAT+CGG + Chr1:62027403-62027422 None:intergenic 15.0%
!!! TATATAAACACAATTTTTTC+AGG + Chr1:62029139-62029158 None:intergenic 15.0%
!!! TGTTTTATTTTTATCATTCT+AGG - Chr1:62028248-62028267 MsG0180003416.01.T01:intron 15.0%
!! AATTTCTTCTATTAAGATTC+GGG - Chr1:62027544-62027563 MsG0180003416.01.T01:intron 20.0%
!! ATATTAAAATTGGAAAAGAG+AGG + Chr1:62028549-62028568 None:intergenic 20.0%
!! ATATTATGTCTATTAAGTGA+GGG - Chr1:62028912-62028931 MsG0180003416.01.T01:intron 20.0%
!! ATTGAACAGTTCAATTAAAA+GGG + Chr1:62028107-62028126 None:intergenic 20.0%
!! CAATTTCTTCTATTAAGATT+CGG - Chr1:62027543-62027562 MsG0180003416.01.T01:intron 20.0%
!! CATCGTTATAAAACTTAAAT+AGG + Chr1:62029770-62029789 None:intergenic 20.0%
!! TCTTGCAAATATGAATAAAA+TGG - Chr1:62028207-62028226 MsG0180003416.01.T01:intron 20.0%
!! TTTAGTGGAAAAGTTATAAA+GGG - Chr1:62028441-62028460 MsG0180003416.01.T01:intron 20.0%
!!! AGACTTTTTATATAGAATTG+TGG + Chr1:62027987-62028006 None:intergenic 20.0%
!!! ATAATGGAGCATATTAAAAT+TGG + Chr1:62028559-62028578 None:intergenic 20.0%
!!! GTTTAAATGAAGTATTAAGT+GGG + Chr1:62028585-62028604 None:intergenic 20.0%
!!! GTTTTCCATTTTATTTTAAC+AGG - Chr1:62029178-62029197 MsG0180003416.01.T01:intron 20.0%
!!! TAGTGAGAGAATTAATATTT+TGG - Chr1:62028688-62028707 MsG0180003416.01.T01:intron 20.0%
!!! TATGAAATTGATGATTGAAT+TGG + Chr1:62026932-62026951 None:intergenic 20.0%
!!! TTTTTGCATTTTTTGAATCT+GGG - Chr1:62026954-62026973 MsG0180003416.01.T01:intron 20.0%
! AACCACCTGTTAAAATAAAA+TGG + Chr1:62029186-62029205 None:intergenic 25.0%
! ACAAATTATGCAAACACTTA+CGG + Chr1:62027255-62027274 None:intergenic 25.0%
! AGTTAAGAATCTTGATATTG+TGG - Chr1:62027598-62027617 MsG0180003416.01.T01:intron 25.0%
! ATCTGTTATAATTACGAACT+TGG - Chr1:62030253-62030272 MsG0180003416.01.T01:five_prime_UTR 25.0%
! CATTCTCAATTCTATTACAT+TGG + Chr1:62027935-62027954 None:intergenic 25.0%
! CATTGAACAGTTCAATTAAA+AGG + Chr1:62028108-62028127 None:intergenic 25.0%
! CTTTAGTGGAAAAGTTATAA+AGG - Chr1:62028440-62028459 MsG0180003416.01.T01:intron 25.0%
! GATATTATGTCTATTAAGTG+AGG - Chr1:62028911-62028930 MsG0180003416.01.T01:intron 25.0%
! GGAGATAAAATTATAGAACA+TGG + Chr1:62029061-62029080 None:intergenic 25.0%
! TAGTTAAATCAGTTAGAAGA+TGG - Chr1:62028036-62028055 MsG0180003416.01.T01:intron 25.0%
! TATTATTTATGCTATCTCTC+TGG + Chr1:62028493-62028512 None:intergenic 25.0%
! TTGAACAGTTCAATTAAAAG+GGG + Chr1:62028106-62028125 None:intergenic 25.0%
! TTTATCTGCTTGTTTATTAC+TGG - Chr1:62027850-62027869 MsG0180003416.01.T01:intron 25.0%
! TTTCTGAATCTTAGCTTATT+AGG - Chr1:62028006-62028025 MsG0180003416.01.T01:intron 25.0%
!! AAATCAGTGATTCTTTTTGT+TGG + Chr1:62028150-62028169 None:intergenic 25.0%
!! ATTGTCATTGAATTCTAAGA+TGG + Chr1:62030104-62030123 None:intergenic 25.0%
!! GGTTTAAATGAAGTATTAAG+TGG + Chr1:62028586-62028605 None:intergenic 25.0%
!! GTTCTATAATTTTATCTCCT+GGG - Chr1:62029062-62029081 MsG0180003416.01.T01:CDS 25.0%
!! TGTGACTTTGATTTAATTTC+AGG + Chr1:62026776-62026795 None:intergenic 25.0%
!! TGTTCTATAATTTTATCTCC+TGG - Chr1:62029061-62029080 MsG0180003416.01.T01:CDS 25.0%
!! TTTGTTGGTTATGTTCAAAA+CGG + Chr1:62028135-62028154 None:intergenic 25.0%
!! TTTTTCTTGTTCCTTAAGAT+GGG - Chr1:62027132-62027151 MsG0180003416.01.T01:intron 25.0%
!!! ATTAGGTTTGGAATTTTCTA+TGG - Chr1:62029871-62029890 MsG0180003416.01.T01:CDS 25.0%
!!! CCTCTAAAACTTTTATATTG+CGG - Chr1:62027664-62027683 MsG0180003416.01.T01:intron 25.0%
!!! CTTTTTGCATTTTTTGAATC+TGG - Chr1:62026953-62026972 MsG0180003416.01.T01:intron 25.0%
!!! TGGTTGGTTTGTATTTTATT+TGG - Chr1:62029966-62029985 MsG0180003416.01.T01:intron 25.0%
!!! TTCCATTTTATTTTAACAGG+TGG - Chr1:62029181-62029200 MsG0180003416.01.T01:intron 25.0%
!!! TTCTCATTTTAAAATAGACG+AGG + Chr1:62028821-62028840 None:intergenic 25.0%
!!! TTGGTTTGTATTTTATTTGG+CGG - Chr1:62029969-62029988 MsG0180003416.01.T01:intron 25.0%
!!! TTGTCATTGAATTCTAAGAT+GGG + Chr1:62030103-62030122 None:intergenic 25.0%
!!! TTTATTTTCTCTTGTTCTGT+TGG - Chr1:62027184-62027203 MsG0180003416.01.T01:intron 25.0%
!!! TTTTATTTTAACAGGTGGTT+TGG - Chr1:62029186-62029205 MsG0180003416.01.T01:intron 25.0%
!!! TTTTTTCTTGTTCCTTAAGA+TGG - Chr1:62027131-62027150 MsG0180003416.01.T01:intron 25.0%
AAATTGGAAAAGAGAGGATA+AGG + Chr1:62028543-62028562 None:intergenic 30.0%
AAGTTCATGAAATACAAGCA+AGG - Chr1:62027344-62027363 MsG0180003416.01.T01:intron 30.0%
AATTGGAAAAGAGAGGATAA+GGG + Chr1:62028542-62028561 None:intergenic 30.0%
ACCTGTATGCTAAAAGTAAA+AGG + Chr1:62030233-62030252 None:intergenic 30.0%
AGTATTAAGTGGGAAGATAA+TGG + Chr1:62028575-62028594 None:intergenic 30.0%
AGTTCAATTAAAAGGGGTAA+AGG + Chr1:62028100-62028119 None:intergenic 30.0%
ATTGAATGTAATCACATGTG+TGG - Chr1:62027428-62027447 MsG0180003416.01.T01:CDS 30.0%
CCATTTATATACAACCCAAA+GGG + Chr1:62028292-62028311 None:intergenic 30.0%
GCAAAAAATTCCACAAGTAT+AGG + Chr1:62030021-62030040 None:intergenic 30.0%
GCATCAAAAGTCAAACTAAA+GGG + Chr1:62027518-62027537 None:intergenic 30.0%
GTGATTCTAAATTGTACTTG+CGG - Chr1:62027566-62027585 MsG0180003416.01.T01:intron 30.0%
TATAACACAACTGAGATAGA+TGG + Chr1:62028186-62028205 None:intergenic 30.0%
TGCATGATCAATTCATATAG+AGG + Chr1:62027303-62027322 None:intergenic 30.0%
TGCTCTTTAGATTTCATCAT+CGG - Chr1:62029736-62029755 MsG0180003416.01.T01:CDS 30.0%
TTAGCTGATTACTACTTTAG+TGG - Chr1:62028426-62028445 MsG0180003416.01.T01:intron 30.0%
TTATGCTGCTATACATCTAA+CGG - Chr1:62029393-62029412 MsG0180003416.01.T01:intron 30.0%
TTGAATGTAATCACATGTGT+GGG - Chr1:62027429-62027448 MsG0180003416.01.T01:CDS 30.0%
TTGTGAGTAGTTTGAACTAA+CGG + Chr1:62026882-62026901 None:intergenic 30.0%
TTTACTTACTTAGCCATTGT+TGG - Chr1:62027002-62027021 MsG0180003416.01.T01:intron 30.0%
! AAACAAACAGAATTTTGCCA+AGG + Chr1:62029031-62029050 None:intergenic 30.0%
! AACAAACAGAATTTTGCCAA+GGG + Chr1:62029030-62029049 None:intergenic 30.0%
! ATGACAATTTTCTTCCCTTT+GGG - Chr1:62028275-62028294 MsG0180003416.01.T01:intron 30.0%
! ATTTCTTGTCTTTTGCAGAT+GGG - Chr1:62030151-62030170 MsG0180003416.01.T01:five_prime_UTR 30.0%
! TTTTCTTGTTCCTTAAGATG+GGG - Chr1:62027133-62027152 MsG0180003416.01.T01:intron 30.0%
!! AGTTAGAAGATGGTCATTTT+TGG - Chr1:62028046-62028065 MsG0180003416.01.T01:intron 30.0%
!! CAAAAAGAATCACTGATTTC+TGG - Chr1:62028151-62028170 MsG0180003416.01.T01:intron 30.0%
!! CCGCAATATAAAAGTTTTAG+AGG + Chr1:62027667-62027686 None:intergenic 30.0%
!! CTGCACTTAGTTCTAAATTA+TGG + Chr1:62027709-62027728 None:intergenic 30.0%
!! TCCTTTTACTTTTAGCATAC+AGG - Chr1:62030229-62030248 MsG0180003416.01.T01:five_prime_UTR 30.0%
!! TGGTTTGTATTTTATTTGGC+GGG - Chr1:62029970-62029989 MsG0180003416.01.T01:intron 30.0%
!!! ACTTGTGGAATTTTTTGCTA+TGG - Chr1:62030023-62030042 MsG0180003416.01.T01:intron 30.0%
!!! CTTTAGTTTGACTTTTGATG+CGG - Chr1:62027517-62027536 MsG0180003416.01.T01:intron 30.0%
!!! GGTTAGTCTAAAGTTTTCTT+TGG - Chr1:62028070-62028089 MsG0180003416.01.T01:intron 30.0%
!!! TTTTTTTACTAAGACACGTC+AGG + Chr1:62029847-62029866 None:intergenic 30.0%
AAAAATCGTCAGAACAAGCA+AGG + Chr1:62029275-62029294 None:intergenic 35.0%
AAAGTCAAATCCCCATCTTA+AGG + Chr1:62027146-62027165 None:intergenic 35.0%
AACCGGAAAAATAGAGTATG+AGG + Chr1:62028323-62028342 None:intergenic 35.0%
AATCAGAATTCTTGCATCGA+TGG - Chr1:62029811-62029830 MsG0180003416.01.T01:intron 35.0%
ACAACTAAATCCTCAGTTCA+TGG - Chr1:62029212-62029231 MsG0180003416.01.T01:intron 35.0%
ACAGCTTGTATTAGAAATGC+CGG - Chr1:62027473-62027492 MsG0180003416.01.T01:CDS 35.0%
ACCGGAAAAATAGAGTATGA+GGG + Chr1:62028322-62028341 None:intergenic 35.0%
AGATTACTGCATTGAATAGC+TGG + Chr1:62029539-62029558 None:intergenic 35.0%
AGGAGATACAAATTCCATCT+TGG + Chr1:62027231-62027250 None:intergenic 35.0%
AGTTATAAAGGGCCAATGTT+TGG - Chr1:62028452-62028471 MsG0180003416.01.T01:intron 35.0%
ATGAATAGCTCACATACTTG+AGG + Chr1:62029245-62029264 None:intergenic 35.0%
ATGTATAGCTGGAACAAATG+TGG + Chr1:62029632-62029651 None:intergenic 35.0%
ATTATGCAAACACTTACGGT+AGG + Chr1:62027251-62027270 None:intergenic 35.0%
CAACATACCAATCATGTATC+AGG + Chr1:62028395-62028414 None:intergenic 35.0%
CAACTAAATCCTCAGTTCAT+GGG - Chr1:62029213-62029232 MsG0180003416.01.T01:intron 35.0%
CACCTCTTTAATTATGCTGA+TGG + Chr1:62029353-62029372 None:intergenic 35.0%
CATAATTAAGCGCAAAAGCA+AGG + Chr1:62028714-62028733 None:intergenic 35.0%
CGCATCAAAAGTCAAACTAA+AGG + Chr1:62027519-62027538 None:intergenic 35.0%
CTAAGTGCAGAACTGAAATA+TGG - Chr1:62027719-62027738 MsG0180003416.01.T01:CDS 35.0%
CTCAATTCTATTACATTGGC+AGG + Chr1:62027931-62027950 None:intergenic 35.0%
CTCCATCAGCATAATTAAAG+AGG - Chr1:62029348-62029367 MsG0180003416.01.T01:intron 35.0%
GCAAAATACAGACAAATGTG+TGG - Chr1:62027620-62027639 MsG0180003416.01.T01:intron 35.0%
GCCATTTATATACAACCCAA+AGG + Chr1:62028293-62028312 None:intergenic 35.0%
TAATACTCTTCTAGTCGCAT+AGG + Chr1:62029708-62029727 None:intergenic 35.0%
TACCTACAACTTCCAAACAT+TGG + Chr1:62028467-62028486 None:intergenic 35.0%
TCAACAAGTATACTTGCAAG+TGG - Chr1:62029946-62029965 MsG0180003416.01.T01:CDS 35.0%
TCACTAAAACCTCATATCAG+TGG - Chr1:62028366-62028385 MsG0180003416.01.T01:intron 35.0%
TGTAGTATACAGCACACATA+CGG + Chr1:62028794-62028813 None:intergenic 35.0%
TTTCTAATACAAGCTGTGTC+CGG + Chr1:62027470-62027489 None:intergenic 35.0%
! AGATTTTTCTTCGTTAGAGC+TGG - Chr1:62029429-62029448 MsG0180003416.01.T01:intron 35.0%
! ATCAGAATTCTTGCATCGAT+GGG - Chr1:62029812-62029831 MsG0180003416.01.T01:intron 35.0%
! CATGACAATTTTCTTCCCTT+TGG - Chr1:62028274-62028293 MsG0180003416.01.T01:intron 35.0%
! CATTTCTTGTCTTTTGCAGA+TGG - Chr1:62030150-62030169 MsG0180003416.01.T01:five_prime_UTR 35.0%
! GAAGAATCGAGAAGCTTTTA+TGG + Chr1:62028607-62028626 None:intergenic 35.0%
! GAAGACAGCAAAATTTTGCA+GGG + Chr1:62028649-62028668 None:intergenic 35.0%
! TAGTAATGAAGTACTTCCCT+TGG - Chr1:62029011-62029030 MsG0180003416.01.T01:intron 35.0%
! TATAATTTTATCTCCTGGGC+TGG - Chr1:62029066-62029085 MsG0180003416.01.T01:CDS 35.0%
! TGAAGACAGCAAAATTTTGC+AGG + Chr1:62028650-62028669 None:intergenic 35.0%
! TTCAAATTTGAATCGGTGTC+CGG + Chr1:62027396-62027415 None:intergenic 35.0%
! TTCTCGATTCTTCCATTTTC+TGG - Chr1:62028614-62028633 MsG0180003416.01.T01:intron 35.0%
! TTGGGTTGTATATAAATGGC+AGG - Chr1:62028293-62028312 MsG0180003416.01.T01:intron 35.0%
! TTTTCTCTTGTTCTGTTGGT+TGG - Chr1:62027188-62027207 MsG0180003416.01.T01:intron 35.0%
!! CCCTTTGGGTTGTATATAAA+TGG - Chr1:62028289-62028308 MsG0180003416.01.T01:intron 35.0%
!! GGTTTGTATTTTATTTGGCG+GGG - Chr1:62029971-62029990 MsG0180003416.01.T01:intron 35.0%
!! GTTTGTATTTTATTTGGCGG+GGG - Chr1:62029972-62029991 MsG0180003416.01.T01:intron 35.0%
!! TATGCGACTAGAAGAGTATT+AGG - Chr1:62029707-62029726 MsG0180003416.01.T01:CDS 35.0%
!! TCATTGAATTCTAAGATGGG+TGG + Chr1:62030100-62030119 None:intergenic 35.0%
!!! GCTGTTTTGATAATTCTTGC+AGG - Chr1:62027749-62027768 MsG0180003416.01.T01:intron 35.0%
!!! TAGAAGATGGTCATTTTTGG+TGG - Chr1:62028049-62028068 MsG0180003416.01.T01:intron 35.0%
AAAAGAGAGGATAAGGGTCA+TGG + Chr1:62028536-62028555 None:intergenic 40.0%
AAACTGCATAGTGTCACACA+TGG - Chr1:62026814-62026833 MsG0180003416.01.T01:intron 40.0%
AGTATGTGAGCTATTCATCG+TGG - Chr1:62029247-62029266 MsG0180003416.01.T01:intron 40.0%
ATAGGTGTAACTCACTTACG+TGG + Chr1:62029690-62029709 None:intergenic 40.0%
CAAGTATACTTGCAAGTGGT+TGG - Chr1:62029950-62029969 MsG0180003416.01.T01:CDS 40.0%
CTATGTGGACAAACTAGATG+AGG - Chr1:62028958-62028977 MsG0180003416.01.T01:intron 40.0%
GACATAATTGCAGAGAGACT+GGG - Chr1:62030173-62030192 MsG0180003416.01.T01:five_prime_UTR 40.0%
GGTTGTATATAAATGGCAGG+TGG - Chr1:62028296-62028315 MsG0180003416.01.T01:intron 40.0%
TTCACGCTCTAATTCCATCA+TGG - Chr1:62026852-62026871 MsG0180003416.01.T01:intron 40.0%
TTCATTATCGCTGCAATGGT+TGG - Chr1:62027081-62027100 MsG0180003416.01.T01:intron 40.0%
TTCGTTAGAGCTGGAATGAT+GGG - Chr1:62029438-62029457 MsG0180003416.01.T01:intron 40.0%
TTTGTTCCAGCTATACATCC+TGG - Chr1:62029634-62029653 MsG0180003416.01.T01:intron 40.0%
! AAAATTTTGCAGGGAGCCAA+GGG + Chr1:62028640-62028659 None:intergenic 40.0%
! AACAAGTTTTCCAGGGAGAA+TGG + Chr1:62027030-62027049 None:intergenic 40.0%
! TTCTGTTGGTTGGACTTCTT+TGG - Chr1:62027198-62027217 MsG0180003416.01.T01:intron 40.0%
! TTTACTTCGTGACTTGCAAC+CGG + Chr1:62028340-62028359 None:intergenic 40.0%
!! CTTGCTAAGAGCATTCAAGA+TGG - Chr1:62029486-62029505 MsG0180003416.01.T01:intron 40.0%
!! GCCCTCATACTCTATTTTTC+CGG - Chr1:62028318-62028337 MsG0180003416.01.T01:intron 40.0%
!!! GCATTTTTTGAATCTGGGTC+AGG - Chr1:62026959-62026978 MsG0180003416.01.T01:intron 40.0%
AGGGAGAATGGATCCAACAA+TGG + Chr1:62027018-62027037 None:intergenic 45.0%
AGGTCAATACCCATGAACTG+AGG + Chr1:62029225-62029244 None:intergenic 45.0%
AGTAGTCCAGGATGTATAGC+TGG + Chr1:62029643-62029662 None:intergenic 45.0%
AGTGACAAGGACTTGGGTAT+GGG + Chr1:62026726-62026745 None:intergenic 45.0%
ATAGACTGCGATGCACTATG+TGG - Chr1:62028943-62028962 MsG0180003416.01.T01:intron 45.0%
ATCAGGTCTCCACTGATATG+AGG + Chr1:62028378-62028397 None:intergenic 45.0%
ATGCATTACCTTTCTGCGCT+AGG - Chr1:62030067-62030086 MsG0180003416.01.T01:intron 45.0%
ATTGTTGGATCCATTCTCCC+TGG - Chr1:62027017-62027036 MsG0180003416.01.T01:intron 45.0%
CATAGTGTCACACATGGATC+TGG - Chr1:62026820-62026839 MsG0180003416.01.T01:intron 45.0%
CGTCTTCATTATCGCTGCAA+TGG - Chr1:62027077-62027096 MsG0180003416.01.T01:intron 45.0%
CTATGTTGCAGAGAGTGACA+AGG + Chr1:62026739-62026758 None:intergenic 45.0%
CTCAAGTCCTCTATCTGCTA+TGG + Chr1:62027775-62027794 None:intergenic 45.0%
CTTCGTGTACAAAGTAGTCC+AGG + Chr1:62029655-62029674 None:intergenic 45.0%
CTTCGTTAGAGCTGGAATGA+TGG - Chr1:62029437-62029456 MsG0180003416.01.T01:intron 45.0%
GAACTAACGGAGTTCCATGA+TGG + Chr1:62026869-62026888 None:intergenic 45.0%
GAATCAGAGAGAACAACACC+AGG + Chr1:62027053-62027072 None:intergenic 45.0%
GGACATAATTGCAGAGAGAC+TGG - Chr1:62030172-62030191 MsG0180003416.01.T01:five_prime_UTR 45.0%
GGCCAATGTTTGGAAGTTGT+AGG - Chr1:62028462-62028481 MsG0180003416.01.T01:intron 45.0%
GGTTGCAAGTCACGAAGTAA+AGG - Chr1:62028339-62028358 MsG0180003416.01.T01:intron 45.0%
GTGGAGACCTGATACATGAT+TGG - Chr1:62028385-62028404 MsG0180003416.01.T01:intron 45.0%
TCTTTGGATCAGTGCCAAGA+TGG - Chr1:62027214-62027233 MsG0180003416.01.T01:intron 45.0%
TGCATTACCTTTCTGCGCTA+GGG - Chr1:62030068-62030087 MsG0180003416.01.T01:intron 45.0%
TGCTATGCTCTTTGTAGCAC+CGG + Chr1:62027495-62027514 None:intergenic 45.0%
TTTGCAAGCGCCTATACTTG+TGG - Chr1:62030008-62030027 MsG0180003416.01.T01:intron 45.0%
! ACACCAGGAACAAGTTTTCC+AGG + Chr1:62027038-62027057 None:intergenic 45.0%
! CAAAATTTTGCAGGGAGCCA+AGG + Chr1:62028641-62028660 None:intergenic 45.0%
! CACCAGGAACAAGTTTTCCA+GGG + Chr1:62027037-62027056 None:intergenic 45.0%
! TGGTCTTTGGAGATCTAGTG+TGG - Chr1:62030204-62030223 MsG0180003416.01.T01:five_prime_UTR 45.0%
! TTAGAGCTGGAATGATGGGA+TGG - Chr1:62029442-62029461 MsG0180003416.01.T01:intron 45.0%
!! TGTATTTTATTTGGCGGGGG+TGG - Chr1:62029975-62029994 MsG0180003416.01.T01:intron 45.0%
!! TTCTTCCATTTTCTGGCCCT+TGG - Chr1:62028621-62028640 MsG0180003416.01.T01:intron 45.0%
ACATGTGTGGGTGTCTGTGT+CGG - Chr1:62027441-62027460 MsG0180003416.01.T01:CDS 50.0%
AGAGAGACTGGGCTTCATGT+TGG - Chr1:62030184-62030203 MsG0180003416.01.T01:five_prime_UTR 50.0%
GAGTGACAAGGACTTGGGTA+TGG + Chr1:62026727-62026746 None:intergenic 50.0%
GCAGAGAGTGACAAGGACTT+GGG + Chr1:62026732-62026751 None:intergenic 50.0%
GCATTACCTTTCTGCGCTAG+GGG - Chr1:62030069-62030088 MsG0180003416.01.T01:intron 50.0%
TGAAGCAGTGACACAGACAC+CGG - Chr1:62027374-62027393 MsG0180003416.01.T01:intron 50.0%
TGCAGAGAGTGACAAGGACT+TGG + Chr1:62026733-62026752 None:intergenic 50.0%
TTGCAGGCCATAGCAGATAG+AGG - Chr1:62027765-62027784 MsG0180003416.01.T01:intron 50.0%
! CTCCCTGGAAAACTTGTTCC+TGG - Chr1:62027032-62027051 MsG0180003416.01.T01:intron 50.0%
!! CTGGGCTTCATGTTGGTCTT+TGG - Chr1:62030191-62030210 MsG0180003416.01.T01:five_prime_UTR 50.0%
GCGGCTGCAATTGCAGTTGT+GGG - Chr1:62027683-62027702 MsG0180003416.01.T01:intron 55.0%
GTTCTTCCCCTAGCGCAGAA+AGG + Chr1:62030078-62030097 None:intergenic 55.0%
TGCGGCTGCAATTGCAGTTG+TGG - Chr1:62027682-62027701 MsG0180003416.01.T01:intron 55.0%
! AGCCAGTACTTTTCCAGCCC+AGG + Chr1:62029082-62029101 None:intergenic 55.0%
! CTCCTGGGCTGGAAAAGTAC+TGG - Chr1:62029077-62029096 MsG0180003416.01.T01:CDS 55.0%
! GGGTCAGGTTGCTTTACTCG+CGG - Chr1:62026974-62026993 MsG0180003416.01.T01:intron 55.0%
! GGTCAGGTTGCTTTACTCGC+GGG - Chr1:62026975-62026994 MsG0180003416.01.T01:intron 55.0%
GGGAGCCAAGGGCCAGAAAA+TGG + Chr1:62028629-62028648 None:intergenic 60.0%
TGGGTGTCTGTGTCGGACAC+CGG - Chr1:62027448-62027467 MsG0180003416.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 62026666 62030286 62026666 ID=MsG0180003416.01;Name=MsG0180003416.01
Chr1 mRNA 62026666 62030286 62026666 ID=MsG0180003416.01.T01;Parent=MsG0180003416.01;Name=MsG0180003416.01.T01;_AED=0.47;_eAED=0.51;_QI=167|0.85|0.75|1|0.42|0.62|8|0|233
Chr1 exon 62026666 62026783 62026666 ID=MsG0180003416.01.T01:exon:4435;Parent=MsG0180003416.01.T01
Chr1 exon 62027262 62027308 62027262 ID=MsG0180003416.01.T01:exon:4434;Parent=MsG0180003416.01.T01
Chr1 exon 62027401 62027521 62027401 ID=MsG0180003416.01.T01:exon:4433;Parent=MsG0180003416.01.T01
Chr1 exon 62027705 62027752 62027705 ID=MsG0180003416.01.T01:exon:4432;Parent=MsG0180003416.01.T01
Chr1 exon 62029051 62029181 62029051 ID=MsG0180003416.01.T01:exon:4431;Parent=MsG0180003416.01.T01
Chr1 exon 62029699 62029769 62029699 ID=MsG0180003416.01.T01:exon:4430;Parent=MsG0180003416.01.T01
Chr1 exon 62029854 62029971 62029854 ID=MsG0180003416.01.T01:exon:4429;Parent=MsG0180003416.01.T01
Chr1 exon 62030072 62030286 62030072 ID=MsG0180003416.01.T01:exon:4428;Parent=MsG0180003416.01.T01
Chr1 five_prime_UTR 62030120 62030286 62030120 ID=MsG0180003416.01.T01:five_prime_utr;Parent=MsG0180003416.01.T01
Chr1 CDS 62030072 62030119 62030072 ID=MsG0180003416.01.T01:cds;Parent=MsG0180003416.01.T01
Chr1 CDS 62029854 62029971 62029854 ID=MsG0180003416.01.T01:cds;Parent=MsG0180003416.01.T01
Chr1 CDS 62029699 62029769 62029699 ID=MsG0180003416.01.T01:cds;Parent=MsG0180003416.01.T01
Chr1 CDS 62029051 62029181 62029051 ID=MsG0180003416.01.T01:cds;Parent=MsG0180003416.01.T01
Chr1 CDS 62027705 62027752 62027705 ID=MsG0180003416.01.T01:cds;Parent=MsG0180003416.01.T01
Chr1 CDS 62027401 62027521 62027401 ID=MsG0180003416.01.T01:cds;Parent=MsG0180003416.01.T01
Chr1 CDS 62027262 62027308 62027262 ID=MsG0180003416.01.T01:cds;Parent=MsG0180003416.01.T01
Chr1 CDS 62026666 62026783 62026666 ID=MsG0180003416.01.T01:cds;Parent=MsG0180003416.01.T01
Gene Sequence

>MsG0180003416.01.T01

ATGGATCTGGATTTTCTCATTCACGCTCTAATTCCATCATGGAACTCCGTTGCTTTACTCGCGGGATTTTTTACTTACTTAGCCATTGTTGGATCCATTCTCCCTGGAAAACTTGTTCCTGGTGTTGTTCTCTCTGATTCTACTCGTCTTCATTATCGCTGCAATGGTTTATTTTCTCTTGTTCTGTTGGTTGGACTTCTTTGGATCAGTGCCAAGATGGAATTTGTATCTCCTACCGCCATAGCAGATAGAGGACTTGAGCTGCTGTCTACAACTTTTATCTTCAGTTTTCTTGTATGTAAGCTTAGAATTAACTTTTATCTGCTTGTTTATTACTGGATATGTACTGCTATAAACACAAATTTGATGTGGTTTGGAATACAACTAAATCCTCAGTTCATGGGTATTGACCTCAAATTTTTCTTCGTTAGAGCTGGAATGATGGGATGGCTACTTATCAATCTATCAGTTCTTGCTAAGAGCATTCAAGATGGTACTTTGAGCAAGTCAATGATTCTCTTCCAGCTATTCAATGCACTATACATCCTGGACTACTTTGTACACGAAGAGTACATGACATCCACATGGGACATAATTGCAGAGAGACTGGGCTTCATGTTGGTCTTTGGAGATCTAGTGTGGATTCCTTTTACTTTTAGCATACAGGTATCTGTTATAATTACGAACTTGGTTGACAAATAA
Protein sequence

>MsG0180003416.01.T01

MDLDFLIHALIPSWNSVALLAGFFTYLAIVGSILPGKLVPGVVLSDSTRLHYRCNGLFSLVLLVGLLWISAKMEFVSPTAIADRGLELLSTTFIFSFLVCKLRINFYLLVYYWICTAINTNLMWFGIQLNPQFMGIDLKFFFVRAGMMGWLLINLSVLAKSIQDGTLSKSMILFQLFNALYILDYFVHEEYMTSTWDIIAERLGFMLVFGDLVWIPFTFSIQVSVIITNLVDK*