AlfalfaGEDB | MsG0380015552.01

M. sativa cultivar ZhongmuNo.1 / MsG0380015552.01

KEGG: -
GO: GO:0000439 GO:0006289 GO:0006355
PFAM: PF01476 PF03850

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015552.01.T01	XP_003601044.1	83.473	357	22	3	20	355	18	358	0	577

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015552.01.T01	Q93ZH0	63.687	358	92	4	7	342	10	351	2.93E-157	455

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015552.01.T01	G7J302	83.473	357	22	3	20	355	18	358	0.0	577

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047815.01	MsG0380015552.01	0.833630	4.774653e-56	5.530135e-53
MsG0080048258.01	MsG0380015552.01	0.846846	1.680695e-59	2.931067e-56
MsG0080048781.01	MsG0380015552.01	0.804901	1.729594e-49	9.025908e-47
MsG0180000111.01	MsG0380015552.01	0.834689	2.591353e-56	3.097986e-53
MsG0180000601.01	MsG0380015552.01	0.810607	1.059913e-50	6.417793e-48
MsG0180001293.01	MsG0380015552.01	0.822306	2.541608e-53	2.119389e-50
MsG0180001588.01	MsG0380015552.01	0.818619	1.783087e-52	1.341343e-49
MsG0180001719.01	MsG0380015552.01	0.827326	1.664041e-54	1.601411e-51
MsG0180002218.01	MsG0380015552.01	0.806821	6.826864e-50	3.742108e-47
MsG0180002583.01	MsG0380015552.01	0.807621	4.621190e-50	2.586198e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015552.01.T01	MTR_3g072410	83.473	357	22	3	20	355	18	358	0.0	577
MsG0380015552.01.T01	MTR_3g072430	80.488	164	0	1	348	479	133	296	5.81e-84	261
MsG0380015552.01.T01	MTR_3g072430	100.000	111	0	0	348	458	133	243	6.01e-74	234
MsG0380015552.01.T01	MTR_3g072430	100.000	111	0	0	348	458	133	243	6.27e-74	234
MsG0380015552.01.T01	MTR_3g072430	100.000	85	0	0	348	432	133	217	1.24e-54	182
MsG0380015552.01.T01	MTR_4g094730	30.897	301	170	12	31	319	40	314	2.04e-29	118
MsG0380015552.01.T01	MTR_4g094730	30.897	301	170	12	31	319	40	314	4.16e-29	118

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015552.01.T01	AT1G21880	63.687	358	92	4	7	342	10	351	2.98e-158	455
MsG0380015552.01.T01	AT1G21880	68.790	314	81	2	7	319	10	307	4.17e-157	448
MsG0380015552.01.T01	AT1G77630	57.341	361	116	4	1	339	1	345	5.14e-141	412
MsG0380015552.01.T01	AT1G18340	58.537	164	35	2	348	478	135	298	3.93e-58	194
MsG0380015552.01.T01	AT2G17120	31.641	256	147	9	32	281	34	267	1.86e-31	124

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Find 133 sgRNAs with CRISPR-Local

Find 671 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCCTTCCATTTGGGG+AGG	0.612180	3:-71768290	None:intergenic
AAAATGAAATTACCAGGAAT+AGG	0.451263	3:-71761512	None:intergenic
AAAGGCTTGTTAATGTCTCC+AGG	0.526120	3:+71771430	MsG0380015552.01.T01:exon
AAATCCACACCCAGAGATTT+AGG	0.283439	3:-71770160	None:intergenic
AAATGATTCTGCAGGGTCGC+AGG	0.490594	3:+71763549	MsG0380015552.01.T01:intron
AAATGTTGGGTTTAGGGTTT+TGG	0.163956	3:-71760839	None:intergenic
AACATAAGACATATAAATCG+CGG	0.593436	3:-71761369	None:intergenic
AAGAACAGCAATCTTATGCT+TGG	0.538547	3:+71762791	MsG0380015552.01.T01:CDS
AAGAGAGTTCGGAGACTTTG+AGG	0.415021	3:-71761007	None:intergenic
AAGCTGCCTCAGAGGAGAAT+CGG	0.487510	3:+71771402	MsG0380015552.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAATTGAGGGATGGA+TGG	-	Chr3:71764803-71764822	None:intergenic	30.0%
AAAAATGTATTCAAGTCCTG+GGG	-	Chr3:71768407-71768426	None:intergenic	30.0%
AAAACAGAGAGGAAGAAATA+TGG	-	Chr3:71764165-71764184	None:intergenic	30.0%
AAGGAATGAAACCATAAGTA+AGG	+	Chr3:71769311-71769330	MsG0380015552.01.T01:intron	30.0%
AAGGTAATAGAAGATGAAAG+AGG	+	Chr3:71764393-71764412	MsG0380015552.01.T01:intron	30.0%
AATGCTGATAGAATATCTAG+TGG	-	Chr3:71763216-71763235	None:intergenic	30.0%
AATTAAACCCACCACAAAAT+TGG	-	Chr3:71763848-71763867	None:intergenic	30.0%
ACAAGTGACTAAACTATGAT+TGG	+	Chr3:71771203-71771222	MsG0380015552.01.T01:intron	30.0%
ACATAAGACATATAAATCGC+GGG	-	Chr3:71761371-71761390	None:intergenic	30.0%
ACATTCCCCTTCTTATATTA+TGG	-	Chr3:71766184-71766203	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	71760823	71771899	71760823	ID=MsG0380015552.01;Name=MsG0380015552.01
Chr3	mRNA	71760823	71771899	71760823	ID=MsG0380015552.01.T01;Parent=MsG0380015552.01;Name=MsG0380015552.01.T01;_AED=0.40;_eAED=0.41;_QI=44\|0.54\|0.75\|1\|1\|1\|12\|457\|479
Chr3	exon	71760823	71761521	71760823	ID=MsG0380015552.01.T01:exon:13905;Parent=MsG0380015552.01.T01
Chr3	exon	71761604	71761651	71761604	ID=MsG0380015552.01.T01:exon:13906;Parent=MsG0380015552.01.T01
Chr3	exon	71762369	71762486	71762369	ID=MsG0380015552.01.T01:exon:13907;Parent=MsG0380015552.01.T01
Chr3	exon	71762739	71762872	71762739	ID=MsG0380015552.01.T01:exon:13908;Parent=MsG0380015552.01.T01
Chr3	exon	71763563	71763649	71763563	ID=MsG0380015552.01.T01:exon:13909;Parent=MsG0380015552.01.T01
Chr3	exon	71767055	71767101	71767055	ID=MsG0380015552.01.T01:exon:13910;Parent=MsG0380015552.01.T01
Chr3	exon	71767763	71767800	71767763	ID=MsG0380015552.01.T01:exon:13911;Parent=MsG0380015552.01.T01
Chr3	exon	71767886	71767931	71767886	ID=MsG0380015552.01.T01:exon:13912;Parent=MsG0380015552.01.T01
Chr3	exon	71768095	71768148	71768095	ID=MsG0380015552.01.T01:exon:13913;Parent=MsG0380015552.01.T01
Chr3	exon	71768257	71768325	71768257	ID=MsG0380015552.01.T01:exon:13914;Parent=MsG0380015552.01.T01
Chr3	exon	71770115	71770191	71770115	ID=MsG0380015552.01.T01:exon:13915;Parent=MsG0380015552.01.T01
Chr3	exon	71771376	71771899	71771376	ID=MsG0380015552.01.T01:exon:13916;Parent=MsG0380015552.01.T01
Chr3	five_prime_UTR	71760823	71760866	71760823	ID=MsG0380015552.01.T01:five_prime_utr;Parent=MsG0380015552.01.T01
Chr3	CDS	71760867	71761521	71760867	ID=MsG0380015552.01.T01:cds;Parent=MsG0380015552.01.T01
Chr3	CDS	71761604	71761651	71761604	ID=MsG0380015552.01.T01:cds;Parent=MsG0380015552.01.T01
Chr3	CDS	71762369	71762486	71762369	ID=MsG0380015552.01.T01:cds;Parent=MsG0380015552.01.T01
Chr3	CDS	71762739	71762872	71762739	ID=MsG0380015552.01.T01:cds;Parent=MsG0380015552.01.T01
Chr3	CDS	71763563	71763649	71763563	ID=MsG0380015552.01.T01:cds;Parent=MsG0380015552.01.T01
Chr3	CDS	71767055	71767101	71767055	ID=MsG0380015552.01.T01:cds;Parent=MsG0380015552.01.T01
Chr3	CDS	71767763	71767800	71767763	ID=MsG0380015552.01.T01:cds;Parent=MsG0380015552.01.T01
Chr3	CDS	71767886	71767931	71767886	ID=MsG0380015552.01.T01:cds;Parent=MsG0380015552.01.T01
Chr3	CDS	71768095	71768148	71768095	ID=MsG0380015552.01.T01:cds;Parent=MsG0380015552.01.T01
Chr3	CDS	71768257	71768325	71768257	ID=MsG0380015552.01.T01:cds;Parent=MsG0380015552.01.T01
Chr3	CDS	71770115	71770191	71770115	ID=MsG0380015552.01.T01:cds;Parent=MsG0380015552.01.T01
Chr3	CDS	71771376	71771442	71771376	ID=MsG0380015552.01.T01:cds;Parent=MsG0380015552.01.T01
Chr3	three_prime_UTR	71771443	71771899	71771443	ID=MsG0380015552.01.T01:three_prime_utr;Parent=MsG0380015552.01.T01

Gene Sequence

>MsG0380015552.01.T01

ATGCAGAACAAAAACATTCTATTATTCTTGTTCTTGTTCCTCTTCAAACTCTTCACAACAACAACCTCAAAATCAACAATAGAACCATGCACAACCTCCGACACATGCAACTCTCTCCTAGGTTATACCCTTTACACAGACCTCAAAGTCTCCGAACTCTCTTCCCTCTTCCAAATCGACCCAATCTCACTCCTCACCGCAAACTCCATAGACATCTCTTACCCTGACGTTGAACACCACATCCTCCCTTCAAAACTCTACCTCAAAATCCCAATCCAATGCTCTTGTGTAGATGGAATCCGTAAATCCGTTTCAACCAACTACAAAATCCGTCCTTCTGACACACTTTCATCCATTGCTGATTCCATTTACGGTGGTTTGGTTTCTTCTGATCAGCTTAGAGAAGCTAACTCTGTAACGGATCCGAATGTTCTTGATGTTGGTCAGAACCTTGTTGTTCCTCTTCCTTGTACTTGTTTTAATGGTTCGGATAATGGGTTGCCCGCGATTTATATGTCTTATGTTGTTCAGCCGTTGGATAGTTTGAATTCTCTTGCTGCTAGGTATTTTACTACTCTTACTGATTTGATGAATGTTAATGCTATGGGGACTACTGGAATTTCTGCTGGTGATATTCTTGCTATTCCTATTCCTGGGTCTGTTTGGATTGATTTATTTGAAATTATCTACTTGCATTACGCTTCCTGTGCATCAAAGTTTCCGAAAGATTCTGCTGATTTTGGATTGCTTGTCCCTAATGGAAGTTATGCTATTACAGCAGGACACTGTGTGCAGTGTAGCTGTGGACCCCGAAACTTAAATTTGTACTGTATGCCGGCTTCTCTAGCTGTTTCTTGCTCAAGCATGCAATGCAAGAACAGCAATCTTATGCTTGGTAATGTTACCGTGCAACAGACTAGCGGTGGTTGCAATGTGACTTCTTGCACTTACGATGGGTCGCAGGAATTCCCTCCTCTTATTGCCCCACCTACAGTTGTCCGAGAGAATCATTATTTGCACCGGCCCCGTCACCATCATCACTATATACAGAGAGCTTTTCGTTCAGGACCGATGCATCCTCAACCTCGGATTCTATGTCTACAAGGATCTACTGATGGACCAGAACAGTATGTGGCAATCATGAATGCAATATTCTCTGCTCAGCGTTCTGTAGTTCCTGTAGATTCTTGTTTTATTGGTTCAAACAATTCTGCATTCCTTCAACAGGCTTCATACATAACTGGTGGCATATATTACAGGCCTCCCCAAATGGAAGGGCTTTTTCAATATCTTTCAACGGTGTTTGCAACTGATTTGCATTCTCGTGAATTTTTAAGGCTTCCTAAATCTCTGGGTGTGGATTTTCGTGCTTCCTCTGTATTTGGCCAGACTCAATCAGAAGCTGCCTCAGAGGAGAATCGGAAAAGAAAGGCTTGTTAA

Protein sequence

>MsG0380015552.01.T01

MQNKNILLFLFLFLFKLFTTTTSKSTIEPCTTSDTCNSLLGYTLYTDLKVSELSSLFQIDPISLLTANSIDISYPDVEHHILPSKLYLKIPIQCSCVDGIRKSVSTNYKIRPSDTLSSIADSIYGGLVSSDQLREANSVTDPNVLDVGQNLVVPLPCTCFNGSDNGLPAIYMSYVVQPLDSLNSLAARYFTTLTDLMNVNAMGTTGISAGDILAIPIPGSVWIDLFEIIYLHYASCASKFPKDSADFGLLVPNGSYAITAGHCVQCSCGPRNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTVQQTSGGCNVTSCTYDGSQEFPPLIAPPTVVRENHYLHRPRHHHHYIQRAFRSGPMHPQPRILCLQGSTDGPEQYVAIMNAIFSAQRSVVPVDSCFIGSNNSAFLQQASYITGGIYYRPPQMEGLFQYLSTVFATDLHSREFLRLPKSLGVDFRASSVFGQTQSEAASEENRKRKAC*