AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003921.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003921.01.T01 MTR_1g071070 95.297 723 31 3 1 721 1 722 0.0 1367
MsG0180003921.01.T01 MTR_7g095890 49.458 738 257 30 12 721 4 653 1.15e-178 525
MsG0180003921.01.T01 MTR_7g015120 29.104 268 136 13 491 712 649 908 9.48e-14 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003921.01.T01 AT3G63430 35.955 712 270 26 21 721 4 540 1.12e-107 338
MsG0180003921.01.T01 AT3G63430 37.061 626 221 22 103 721 49 508 4.70e-101 320
MsG0180003921.01.T01 AT5G15580 26.000 400 187 15 401 705 528 913 1.12e-14 78.6

Find 205 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACCGTAACCACTTTCTTTC+AGG 0.122952 1:-70201288 MsG0180003921.01.T01:CDS
AATAATAATGTTAATTCTTA+TGG 0.170803 1:-70200642 MsG0180003921.01.T01:CDS
TTAATGACCATGACAAAATT+AGG 0.176366 1:-70198407 MsG0180003921.01.T01:three_prime_UTR
TAACCGTTGGACTTCAATTT+TGG 0.196054 1:+70200750 None:intergenic
AGGAAGAGGGAAGCAGAATA+AGG 0.226928 1:-70200577 MsG0180003921.01.T01:CDS
CAGTGTTATTGTTAGATTAA+TGG 0.236552 1:-70200859 MsG0180003921.01.T01:CDS
TCTTATGGTAACATTGATAA+TGG 0.256110 1:-70200627 MsG0180003921.01.T01:CDS
TTAGAGGCATTACAGCTTAA+AGG 0.264615 1:-70200399 MsG0180003921.01.T01:CDS
TCAATGCATCGTTTGGTAAT+TGG 0.266872 1:+70199462 None:intergenic
TAACTTTATGTCAATATAAA+AGG 0.278881 1:-70198367 MsG0180003921.01.T01:three_prime_UTR
CTCCTCCGCGTCTCCACGTT+CGG 0.283732 1:+70200153 None:intergenic
TGTGATGTAGAAGTATAAAT+TGG 0.285153 1:-70199634 MsG0180003921.01.T01:intron
AGTGTTATTGTTAGATTAAT+GGG 0.292224 1:-70200858 MsG0180003921.01.T01:CDS
CTCGTATTCAAGGATTTAAT+TGG 0.294796 1:-70198666 MsG0180003921.01.T01:CDS
GTAACATTGATAATGGATTA+TGG 0.301713 1:-70200620 MsG0180003921.01.T01:CDS
ATCCGAGGAGGAGGCAAAAT+TGG 0.302398 1:-70199084 MsG0180003921.01.T01:CDS
CCTTCCTGTTCTGGAACTTA+AGG 0.317482 1:-70201042 MsG0180003921.01.T01:CDS
AAGCACAATGATTCGATCTA+TGG 0.334299 1:-70200495 MsG0180003921.01.T01:CDS
GAATCATTGTGCTTTGGTTC+AGG 0.335322 1:+70200504 None:intergenic
ATCAGATTTGGTCAGAGTTT+CGG 0.339373 1:-70198833 MsG0180003921.01.T01:CDS
CACTCTCAAGCATATCTTAG+AGG 0.340641 1:-70200415 MsG0180003921.01.T01:CDS
GACTCATTACCATCGGATTC+CGG 0.344614 1:-70200831 MsG0180003921.01.T01:CDS
ACCGTGGAAGGCGGTGTCTA+AGG 0.350723 1:-70198868 MsG0180003921.01.T01:CDS
AGATGAGTGGTTGGGGTGAA+TGG 0.352171 1:-70198728 MsG0180003921.01.T01:CDS
CTCTGTGTCGGTAAGTGAAT+TGG 0.356274 1:+70199933 None:intergenic
GATGATTATGATTATTCATC+TGG 0.360249 1:+70200700 None:intergenic
TCTGAATCAGAGGATTTGTT+TGG 0.368561 1:-70198789 MsG0180003921.01.T01:CDS
GCATTTGTTCGGATCTCTCT+AGG 0.372895 1:+70200927 None:intergenic
AAGATCTCAGTGGTTTCATT+AGG 0.374295 1:+70200337 None:intergenic
CATTAGCAGTTGCATTTGTT+CGG 0.378994 1:+70200916 None:intergenic
AGGAAAATGTCACAATCTTC+AGG 0.380114 1:+70199008 None:intergenic
TTCTCTGATTTCTCCGGTGA+CGG 0.381441 1:+70201134 None:intergenic
AGAGGTATGGAAGGAGGAAG+AGG 0.383018 1:-70200591 MsG0180003921.01.T01:CDS
TGAGCTCGATCATCAAATCT+TGG 0.387356 1:+70200216 None:intergenic
AAAACAAGTCCTTCCTGTTC+TGG 0.392571 1:-70201051 MsG0180003921.01.T01:CDS
AATTACCGGAGGTAATCTTT+TGG 0.399753 1:+70201245 None:intergenic
TTTCTTCTTGAACTTATCTT+CGG 0.400406 1:+70200081 None:intergenic
CTTATCTTCGGTGAATTAAC+CGG 0.405903 1:+70200093 None:intergenic
CTCCTCCGCATTCTTCTGTT+CGG 0.411229 1:-70200269 MsG0180003921.01.T01:CDS
GGGTGAATGGACGGTGGAGA+TGG 0.415119 1:-70198715 MsG0180003921.01.T01:CDS
ATTGTAATCAATGCATCGTT+TGG 0.416134 1:+70199455 None:intergenic
TCATTAGGACAATGGGAGAT+TGG 0.416704 1:+70200352 None:intergenic
TTCAAAACACAAGCTTTCTT+CGG 0.418538 1:+70198586 None:intergenic
GACATGGGATGTATCGTGTA+TGG 0.419545 1:+70201564 None:intergenic
GAGAGGAGACACATCAGATT+TGG 0.420115 1:-70198845 MsG0180003921.01.T01:CDS
TTTAGGAATAGTAGTTGTAA+TGG 0.423730 1:-70201506 MsG0180003921.01.T01:five_prime_UTR
TTCGAGCGGTTTAATAGAAC+CGG 0.430201 1:-70200303 MsG0180003921.01.T01:CDS
CCACGTTCGGGACATTCCTC+CGG 0.430270 1:+70200166 None:intergenic
TCCTCCGCGTCTCCACGTTC+GGG 0.432714 1:+70200154 None:intergenic
TCTAGGGTGAAGCCCTCCTT+TGG 0.433294 1:+70200944 None:intergenic
ATTGTTGCTTCTCAAGTAGA+AGG 0.435159 1:+70198988 None:intergenic
CGTTGCAGGAAATTCTTAAC+CGG 0.442389 1:-70198905 MsG0180003921.01.T01:CDS
GGCAGAGGAGATGAGTGGTT+GGG 0.443076 1:-70198736 MsG0180003921.01.T01:CDS
TTTATATTGACATAAAGTTA+TGG 0.445590 1:+70198370 None:intergenic
GGAGATGGGAGATGTCGTTT+TGG 0.449346 1:-70198700 MsG0180003921.01.T01:CDS
AGGAAGGTACAAGGTCTTCA+TGG 0.452464 1:-70201022 MsG0180003921.01.T01:CDS
TAGATCGAATCATTGTGCTT+TGG 0.455948 1:+70200498 None:intergenic
GAGAAAAGTGATTGATCCTA+AGG 0.458864 1:-70200019 MsG0180003921.01.T01:CDS
AAACAGATGGGATGCATGGC+TGG 0.460185 1:-70201327 MsG0180003921.01.T01:CDS
TCATCTTTCTCTGATTTCTC+CGG 0.460722 1:+70201128 None:intergenic
AGTGGTTTCATTAGGACAAT+GGG 0.462877 1:+70200345 None:intergenic
GTCAATATAAAAGGAAGTGT+TGG 0.463959 1:-70198358 MsG0180003921.01.T01:three_prime_UTR
CCTTCCTTAAGTTCCAGAAC+AGG 0.464066 1:+70201038 None:intergenic
GGAAGAGGGAAGCAGAATAA+GGG 0.466407 1:-70200576 MsG0180003921.01.T01:CDS
GAGCTCGATCATCAAATCTT+GGG 0.471607 1:+70200217 None:intergenic
AATTGGAGGAGTACAAAGAA+GGG 0.474862 1:-70199617 MsG0180003921.01.T01:CDS
GAGGTATGGAAGGAGGAAGA+GGG 0.477557 1:-70200590 MsG0180003921.01.T01:CDS
CACGTTCGGGACATTCCTCC+GGG 0.478882 1:+70200167 None:intergenic
GACGAGTCAAGAACCGATAC+CGG 0.481313 1:+70199516 None:intergenic
GGTGAATGGACGGTGGAGAT+GGG 0.481425 1:-70198714 MsG0180003921.01.T01:CDS
TGGTGTGTTGAAGAAGGATA+TGG 0.481990 1:-70198757 MsG0180003921.01.T01:CDS
CCGTGGAAGGCGGTGTCTAA+GGG 0.482299 1:-70198867 MsG0180003921.01.T01:CDS
TTCCTGAAAGAAAGTGGTTA+CGG 0.487600 1:+70201286 None:intergenic
CGAACAGAAGAATGCGGAGG+AGG 0.487653 1:+70200270 None:intergenic
CAACGGAGCAATGTCGGCTC+GGG 0.488675 1:-70200723 MsG0180003921.01.T01:CDS
CAGCGACAGGAGGATCTCCC+AGG 0.488943 1:-70200044 MsG0180003921.01.T01:CDS
CCCTTAGACACCGCCTTCCA+CGG 0.493681 1:+70198867 None:intergenic
AAGTCGATCTCTCGAGACTC+TGG 0.494700 1:+70200779 None:intergenic
ATTATGGAATGGTAGAGGTA+TGG 0.496429 1:-70200604 MsG0180003921.01.T01:CDS
AGGAATAGTAGTTGTAATGG+AGG 0.501411 1:-70201503 MsG0180003921.01.T01:five_prime_UTR
GATATGTGGAGTGCAGGAGA+AGG 0.501417 1:-70199110 MsG0180003921.01.T01:CDS
ACCTCTAGTTTGTTACATTG+AGG 0.503262 1:+70198612 None:intergenic
CACTGAGATCTTCTTCTCCT+CGG 0.505963 1:-70200326 MsG0180003921.01.T01:CDS
AGAGAAAGATGATGGCAAAC+CGG 0.507452 1:-70201117 MsG0180003921.01.T01:CDS
AGAAGGAAAATCCGAGGAGG+AGG 0.508110 1:-70199093 MsG0180003921.01.T01:CDS
TCAACGGAGCAATGTCGGCT+CGG 0.510393 1:-70200724 MsG0180003921.01.T01:CDS
CTTCTTCTCCTCGGTTCGAG+CGG 0.510419 1:-70200317 MsG0180003921.01.T01:CDS
CATCGAACGACTCGTATTCA+AGG 0.510869 1:-70198676 MsG0180003921.01.T01:CDS
GAAGATGATATGTGGAGTGC+AGG 0.512219 1:-70199116 MsG0180003921.01.T01:CDS
GAGAGATTGAGAAAAGGTTG+AGG 0.513937 1:-70200473 MsG0180003921.01.T01:CDS
TGAGAAGCAACAATTTCGTA+AGG 0.515455 1:-70198979 MsG0180003921.01.T01:CDS
TCGGAGGATAAGAGAGAGGG+AGG 0.516634 1:-70198814 MsG0180003921.01.T01:CDS
GAGAAAAGGTTGAGGATGCG+TGG 0.517148 1:-70200465 MsG0180003921.01.T01:CDS
CATTTGTTCGGATCTCTCTA+GGG 0.518783 1:+70200928 None:intergenic
GAGTGGTTGGGGTGAATGGA+CGG 0.519523 1:-70198724 MsG0180003921.01.T01:CDS
CTATTAAACCGCTCGAACCG+AGG 0.520221 1:+70200309 None:intergenic
AATAGTAGTTGTAATGGAGG+AGG 0.520542 1:-70201500 MsG0180003921.01.T01:five_prime_UTR
AATTCTCAAGAGAGGCTCCT+AGG 0.521742 1:-70200998 MsG0180003921.01.T01:CDS
AAATTGGAGGAGTACAAAGA+AGG 0.523276 1:-70199618 MsG0180003921.01.T01:CDS
GATTTGTTTGGAGTGATATG+TGG 0.528271 1:-70198777 MsG0180003921.01.T01:CDS
GCAACTGCTCAGACAGCGAC+AGG 0.528271 1:-70200057 MsG0180003921.01.T01:CDS
CAGTGGTTTCATTAGGACAA+TGG 0.528722 1:+70200344 None:intergenic
CGGAGGAGGAGAATCATAAC+CGG 0.529851 1:+70200284 None:intergenic
GATCCTAAGGTGAAAATGTT+GGG 0.531806 1:-70200006 MsG0180003921.01.T01:CDS
ACGGTGGTAACCTTTGATTC+CGG 0.533627 1:+70198886 None:intergenic
ACATGGGATGTATCGTGTAT+GGG 0.535238 1:+70201565 None:intergenic
GCGGAGGAGGGTTAGTAATG+AGG 0.535416 1:-70200139 MsG0180003921.01.T01:CDS
TTGATCTCTTTAACCGGTGA+CGG 0.536844 1:+70201083 None:intergenic
TGGCAGAGGAGATGAGTGGT+TGG 0.536868 1:-70198737 MsG0180003921.01.T01:CDS
GAGAAATCAGAGAAAGATGA+TGG 0.540245 1:-70201125 MsG0180003921.01.T01:CDS
AGAAAAGGTTGAGGATGCGT+GGG 0.541387 1:-70200464 MsG0180003921.01.T01:CDS
AAAACATATTCACAAACAGA+TGG 0.541473 1:-70201340 MsG0180003921.01.T01:CDS
GGTCTAGTCCTCGTGCTCGT+CGG 0.541863 1:-70200248 MsG0180003921.01.T01:CDS
GTTACAACCTAGTCCGGTAT+CGG 0.542307 1:-70199529 MsG0180003921.01.T01:CDS
AGAAGCAACAATTTCGTAAG+GGG 0.542314 1:-70198977 MsG0180003921.01.T01:CDS
GGCGTTGTCATCACCGTCAC+CGG 0.544136 1:-70201096 MsG0180003921.01.T01:CDS
TCAAGAACCGATACCGGACT+AGG 0.547333 1:+70199522 None:intergenic
AAGCTTCGACGCTGCAGAGG+CGG 0.550682 1:-70198941 MsG0180003921.01.T01:CDS
CGGAGGAGGGTTAGTAATGA+GGG 0.551563 1:-70200138 MsG0180003921.01.T01:CDS
GCAGAGGAGATGAGTGGTTG+GGG 0.553665 1:-70198735 MsG0180003921.01.T01:CDS
TACACTCAACGGAGCAATGT+CGG 0.553892 1:-70200729 MsG0180003921.01.T01:CDS
GAACGAGTTACAACCTAGTC+CGG 0.553950 1:-70199535 MsG0180003921.01.T01:CDS
TGATTCTAGAAGAGTGTCTC+CGG 0.554213 1:-70200112 MsG0180003921.01.T01:CDS
TGTCGAGATCTTGAGAAGGT+TGG 0.554441 1:+70200436 None:intergenic
CGAACGTGGAGACGCGGAGG+AGG 0.554736 1:-70200152 MsG0180003921.01.T01:CDS
GATATGTGGTGTGTTGAAGA+AGG 0.557747 1:-70198763 MsG0180003921.01.T01:CDS
CGGAATCAGAAGATGATATG+TGG 0.558896 1:-70199124 MsG0180003921.01.T01:CDS
CGAGGAGGAGGCAAAATTGG+AGG 0.562051 1:-70199081 MsG0180003921.01.T01:CDS
TGGAATGGTAGAGGTATGGA+AGG 0.562760 1:-70200600 MsG0180003921.01.T01:CDS
ATTGATAATGGATTATGGAA+TGG 0.563730 1:-70200615 MsG0180003921.01.T01:CDS
TCTATGGAGAGATTGAGAAA+AGG 0.563984 1:-70200479 MsG0180003921.01.T01:CDS
GCAGAATAAGGGAACAATGA+TGG 0.564406 1:-70200565 MsG0180003921.01.T01:CDS
TCAAAGGTTACCACCGTGGA+AGG 0.565345 1:-70198880 MsG0180003921.01.T01:CDS
GAAGGCGGTGTCTAAGGGAG+AGG 0.569525 1:-70198862 MsG0180003921.01.T01:CDS
AAATTCTTAACCGGAATCAA+AGG 0.570524 1:-70198896 MsG0180003921.01.T01:CDS
GTTGAAGAAGGATATGGCAG+AGG 0.570762 1:-70198751 MsG0180003921.01.T01:CDS
TGATCCTAAGGTGAAAATGT+TGG 0.573766 1:-70200007 MsG0180003921.01.T01:CDS
AATGGTAGAGGTATGGAAGG+AGG 0.575345 1:-70200597 MsG0180003921.01.T01:CDS
TGTGTCGGTAAGTGAATTGG+AGG 0.575594 1:+70199936 None:intergenic
GATGTAGAAGTATAAATTGG+AGG 0.575910 1:-70199631 MsG0180003921.01.T01:intron
AATGGATTATGGAATGGTAG+AGG 0.576630 1:-70200609 MsG0180003921.01.T01:CDS
GGGTCTTGACTCATTACCAT+CGG 0.577743 1:-70200838 MsG0180003921.01.T01:CDS
AGCTTTGCGCCGGAATCCGA+TGG 0.579218 1:+70200822 None:intergenic
GAGGGAGGAATCTGAATCAG+AGG 0.580288 1:-70198799 MsG0180003921.01.T01:CDS
CAACACCAAAAGATTACCTC+CGG 0.580860 1:-70201250 MsG0180003921.01.T01:intron
CAAAAGCTTCGACGCTGCAG+AGG 0.581028 1:-70198944 MsG0180003921.01.T01:CDS
GAGAAGCAACAATTTCGTAA+GGG 0.581516 1:-70198978 MsG0180003921.01.T01:CDS
TGGGTGCAGCAGAGGATGAA+TGG 0.582444 1:-70199987 MsG0180003921.01.T01:CDS
TCACAAACAGATGGGATGCA+TGG 0.583905 1:-70201331 MsG0180003921.01.T01:CDS
GAACGTGGAGACGCGGAGGA+GGG 0.584357 1:-70200151 MsG0180003921.01.T01:CDS
TGGAGGAGTACAAAGAAGGG+AGG 0.584753 1:-70199614 MsG0180003921.01.T01:CDS
TAACATTGCAGATCAATCTA+CGG 0.588903 1:-70199144 MsG0180003921.01.T01:intron
CCTGTTCTGGAACTTAAGGA+AGG 0.590426 1:-70201038 MsG0180003921.01.T01:CDS
AGAGCAGTTGTTGATGCCAA+AGG 0.590682 1:-70200960 MsG0180003921.01.T01:CDS
CTCAAGTTCCGACGAGCACG+AGG 0.592627 1:+70200240 None:intergenic
AAACATATTCACAAACAGAT+GGG 0.592704 1:-70201339 MsG0180003921.01.T01:CDS
AGATTTGGTCAGAGTTTCGG+AGG 0.592725 1:-70198830 MsG0180003921.01.T01:CDS
GAGCCAAAATTGAAGTCCAA+CGG 0.595174 1:-70200753 MsG0180003921.01.T01:CDS
TGCATTGATTACAATTACAA+AGG 0.595599 1:-70199447 MsG0180003921.01.T01:intron
GAAGCTATTCTCTGAAACTG+TGG 0.600223 1:+70199963 None:intergenic
GCAGTTGTTGATGCCAAAGG+AGG 0.602701 1:-70200957 MsG0180003921.01.T01:CDS
CTGCTATCTAAAGAAAGCCT+AGG 0.603053 1:+70200981 None:intergenic
AGATCTCTGAAGCTTTGCGC+CGG 0.603285 1:+70200812 None:intergenic
TGGTTGGGGTGAATGGACGG+TGG 0.603867 1:-70198721 MsG0180003921.01.T01:CDS
TGCAGGAGAAGGAAAATCCG+AGG 0.604176 1:-70199099 MsG0180003921.01.T01:CDS
CAGTTGTTGATGCCAAAGGA+GGG 0.608108 1:-70200956 MsG0180003921.01.T01:CDS
CATGGGATGTATCGTGTATG+GGG 0.608916 1:+70201566 None:intergenic
AAAGAGTCTGATGAATGACA+TGG 0.610123 1:+70201548 None:intergenic
GAAAATGTTGGGTGCAGCAG+AGG 0.612269 1:-70199995 MsG0180003921.01.T01:CDS
CATCGTTTGGTAATTGGTGA+AGG 0.612762 1:+70199468 None:intergenic
TTCGGGACATTCCTCCGGGT+CGG 0.614158 1:+70200171 None:intergenic
AGTCCAACGGTTACACTCAA+CGG 0.615578 1:-70200740 MsG0180003921.01.T01:CDS
TTCATGGAAATTCTCAAGAG+AGG 0.617223 1:-70201006 MsG0180003921.01.T01:CDS
CGAGAAACTCAAGTCCGACC+CGG 0.620759 1:-70200185 MsG0180003921.01.T01:CDS
AAGAGGGAGAGTAAAATTGG+TGG 0.622433 1:-70198535 MsG0180003921.01.T01:three_prime_UTR
TGGAACTTAAGGAAGGTACA+AGG 0.622837 1:-70201031 MsG0180003921.01.T01:CDS
ATGTCCCGAACGTGGAGACG+CGG 0.626379 1:-70200158 MsG0180003921.01.T01:CDS
GTTTCGGAGGATAAGAGAGA+GGG 0.632682 1:-70198817 MsG0180003921.01.T01:CDS
CCTTAAGTTCCAGAACAGGA+AGG 0.638162 1:+70201042 None:intergenic
GTCGGTAAGTGAATTGGAGG+TGG 0.638750 1:+70199939 None:intergenic
AGTTTCGGAGGATAAGAGAG+AGG 0.638762 1:-70198818 MsG0180003921.01.T01:CDS
CCGGAGGAATGTCCCGAACG+TGG 0.641426 1:-70200166 MsG0180003921.01.T01:CDS
AAAGCTTCAGAGATCTGCGT+CGG 0.646577 1:-70200805 MsG0180003921.01.T01:CDS
GCTCCGTTGAGTGTAACCGT+TGG 0.647311 1:+70200737 None:intergenic
AGAGTGTCGAGATCTTGAGA+AGG 0.648041 1:+70200432 None:intergenic
GATATGGCAGAGGAGATGAG+TGG 0.651978 1:-70198741 MsG0180003921.01.T01:CDS
TCCCGAACGTGGAGACGCGG+AGG 0.652259 1:-70200155 MsG0180003921.01.T01:CDS
TATTGTATATACCTCTGTGT+CGG 0.662309 1:+70199921 None:intergenic
GAAACTCAAGTCCGACCCGG+AGG 0.662948 1:-70200182 MsG0180003921.01.T01:CDS
AAGGTTACCACCGTGGAAGG+CGG 0.664796 1:-70198877 MsG0180003921.01.T01:CDS
ACTGCTCAGACAGCGACAGG+AGG 0.668024 1:-70200054 MsG0180003921.01.T01:CDS
ACCTCAATGTAACAAACTAG+AGG 0.684135 1:-70198613 MsG0180003921.01.T01:CDS
AAGAGTCTGATGAATGACAT+GGG 0.701526 1:+70201549 None:intergenic
GACCGAACAGAAGAATGCGG+AGG 0.707462 1:+70200267 None:intergenic
AGGAGAAGGAAAATCCGAGG+AGG 0.713917 1:-70199096 MsG0180003921.01.T01:CDS
CTAGACCGAACAGAAGAATG+CGG 0.719732 1:+70200264 None:intergenic
ATGGGATGTATCGTGTATGG+GGG 0.719925 1:+70201567 None:intergenic
GCAACTGCTAATGAGAACGA+CGG 0.720590 1:-70200906 MsG0180003921.01.T01:CDS
GGAATCAAAGGTTACCACCG+TGG 0.724541 1:-70198884 MsG0180003921.01.T01:CDS
CAATTCACTTACCGACACAG+AGG 0.735333 1:-70199932 MsG0180003921.01.T01:intron
CGAGGAGAAGAAGATCTCAG+TGG 0.741838 1:+70200327 None:intergenic
GGTGACGGTGATGACAACGC+CGG 0.742306 1:+70201098 None:intergenic
CAGCATAGCGGAGATAACAG+CGG 0.745099 1:-70199559 MsG0180003921.01.T01:CDS
TAAGTTGCTGAACAGCATAG+CGG 0.749606 1:-70199571 MsG0180003921.01.T01:CDS
TTAGACACCGCCTTCCACGG+TGG 0.789038 1:+70198870 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAATGTTAATTCTTA+TGG - Chr1:70199281-70199300 MsG0180003921.01.T01:intron 10.0%
!! TAACTTTATGTCAATATAAA+AGG - Chr1:70201556-70201575 MsG0180003921.01.T01:five_prime_UTR 15.0%
!! TTTATATTGACATAAAGTTA+TGG + Chr1:70201556-70201575 None:intergenic 15.0%
!! AAACAAACAATAAGATTAGT+CGG + Chr1:70198758-70198777 None:intergenic 20.0%
!!! ACTAATCTTATTGTTTGTTT+TGG - Chr1:70198758-70198777 MsG0180003921.01.T01:CDS 20.0%
!!! AGTGTTATTGTTAGATTAAT+GGG - Chr1:70199065-70199084 MsG0180003921.01.T01:CDS 20.0%
!!! TTAAATTCCTAATTTTGTCA+TGG + Chr1:70201526-70201545 None:intergenic 20.0%
! AAAACATATTCACAAACAGA+TGG - Chr1:70198583-70198602 MsG0180003921.01.T01:exon 25.0%
! AAAAGTGAAGAATGAATTAC+CGG + Chr1:70198695-70198714 None:intergenic 25.0%
! AAACATATTCACAAACAGAT+GGG - Chr1:70198584-70198603 MsG0180003921.01.T01:exon 25.0%
! GATGATTATGATTATTCATC+TGG + Chr1:70199226-70199245 None:intergenic 25.0%
! TCTTATGGTAACATTGATAA+TGG - Chr1:70199296-70199315 MsG0180003921.01.T01:intron 25.0%
! TTAATGACCATGACAAAATT+AGG - Chr1:70201516-70201535 MsG0180003921.01.T01:five_prime_UTR 25.0%
! TTTAGGAATAGTAGTTGTAA+TGG - Chr1:70198417-70198436 MsG0180003921.01.T01:three_prime_UTR 25.0%
! TTTCTTCTTGAACTTATCTT+CGG + Chr1:70199845-70199864 None:intergenic 25.0%
!! AAAAGTACATTACTACACAA+TGG + Chr1:70200705-70200724 None:intergenic 25.0%
!! CAGTGTTATTGTTAGATTAA+TGG - Chr1:70199064-70199083 MsG0180003921.01.T01:CDS 25.0%
!! TAATTTTACTTTAGTGGTCA+TGG + Chr1:70198522-70198541 None:intergenic 25.0%
!! TGTGATGTAGAAGTATAAAT+TGG - Chr1:70200289-70200308 MsG0180003921.01.T01:CDS 25.0%
!!! ATTGATAATGGATTATGGAA+TGG - Chr1:70199308-70199327 MsG0180003921.01.T01:intron 25.0%
!!! GCTGTTTAATTTTACTTTAG+TGG + Chr1:70198528-70198547 None:intergenic 25.0%
!!! GTAACATTGATAATGGATTA+TGG - Chr1:70199303-70199322 MsG0180003921.01.T01:intron 25.0%
!!! TGCATTGATTACAATTACAA+AGG - Chr1:70200476-70200495 MsG0180003921.01.T01:CDS 25.0%
!!! TTATAGAGTGAGTTTGTTTT+AGG - Chr1:70198400-70198419 MsG0180003921.01.T01:three_prime_UTR 25.0%
!!! TTGTGATTTTGTTTATGTGT+CGG - Chr1:70200866-70200885 MsG0180003921.01.T01:CDS 25.0%
AAAAAGAGGGAGAGTAAAAT+TGG - Chr1:70201385-70201404 MsG0180003921.01.T01:CDS 30.0%
AAATTCTTAACCGGAATCAA+AGG - Chr1:70201027-70201046 MsG0180003921.01.T01:CDS 30.0%
AACAGCATCAAAGAAAAAGA+GGG - Chr1:70201372-70201391 MsG0180003921.01.T01:CDS 30.0%
ATTGTAATCAATGCATCGTT+TGG + Chr1:70200471-70200490 None:intergenic 30.0%
CTCGTATTCAAGGATTTAAT+TGG - Chr1:70201257-70201276 MsG0180003921.01.T01:CDS 30.0%
TAACAGCATCAAAGAAAAAG+AGG - Chr1:70201371-70201390 MsG0180003921.01.T01:CDS 30.0%
TAACATTGCAGATCAATCTA+CGG - Chr1:70200779-70200798 MsG0180003921.01.T01:CDS 30.0%
TATTGTATATACCTCTGTGT+CGG + Chr1:70200005-70200024 None:intergenic 30.0%
TTCAAAACACAAGCTTTCTT+CGG + Chr1:70201340-70201359 None:intergenic 30.0%
! AATAAGATTAGTCGGTCATT+GGG + Chr1:70198750-70198769 None:intergenic 30.0%
! GATGTAGAAGTATAAATTGG+AGG - Chr1:70200292-70200311 MsG0180003921.01.T01:CDS 30.0%
! GTCAATATAAAAGGAAGTGT+TGG - Chr1:70201565-70201584 MsG0180003921.01.T01:five_prime_UTR 30.0%
! TTGGATTTTCCAAGAGAAAT+AGG + Chr1:70200529-70200548 None:intergenic 30.0%
!! TCACTTTTGATCTCTTTAAC+CGG + Chr1:70198849-70198868 None:intergenic 30.0%
!! TTTTCTTGTCCTATTTCTCT+TGG - Chr1:70200517-70200536 MsG0180003921.01.T01:CDS 30.0%
!!! TCGTCTCTTTTTTTTTTACC+TGG - Chr1:70198717-70198736 MsG0180003921.01.T01:CDS 30.0%
!!! TGTGTTTTAGTTGCTGATTA+TGG - Chr1:70200747-70200766 MsG0180003921.01.T01:CDS 30.0%
!!! TTGCTTTTGTGTTGTTTTGA+TGG + Chr1:70198454-70198473 None:intergenic 30.0%
AAAGAGTCTGATGAATGACA+TGG + Chr1:70198378-70198397 None:intergenic 35.0%
AACCCTGATGTCAAAATGAT+TGG + Chr1:70200564-70200583 None:intergenic 35.0%
AACTAAGTGACAGATTCGTT+GGG + Chr1:70200678-70200697 None:intergenic 35.0%
AAGAGTCTGATGAATGACAT+GGG + Chr1:70198377-70198396 None:intergenic 35.0%
AAGATCTCAGTGGTTTCATT+AGG + Chr1:70199589-70199608 None:intergenic 35.0%
AAGCACAATGATTCGATCTA+TGG - Chr1:70199428-70199447 MsG0180003921.01.T01:intron 35.0%
ACCTCAATGTAACAAACTAG+AGG - Chr1:70201310-70201329 MsG0180003921.01.T01:CDS 35.0%
AGAAGCAACAATTTCGTAAG+GGG - Chr1:70200946-70200965 MsG0180003921.01.T01:CDS 35.0%
AGGAAAATGTCACAATCTTC+AGG + Chr1:70200918-70200937 None:intergenic 35.0%
AGGAATAGTAGTTGTAATGG+AGG - Chr1:70198420-70198439 MsG0180003921.01.T01:three_prime_UTR 35.0%
AGTGGTTTCATTAGGACAAT+GGG + Chr1:70199581-70199600 None:intergenic 35.0%
ATTATGGAATGGTAGAGGTA+TGG - Chr1:70199319-70199338 MsG0180003921.01.T01:intron 35.0%
CATTAGCAGTTGCATTTGTT+CGG + Chr1:70199010-70199029 None:intergenic 35.0%
CTTATCTTCGGTGAATTAAC+CGG + Chr1:70199833-70199852 None:intergenic 35.0%
CTTTAGTTGTACAATCTCGT+GGG - Chr1:70200644-70200663 MsG0180003921.01.T01:CDS 35.0%
GAGAAAAGTGATTGATCCTA+AGG - Chr1:70199904-70199923 MsG0180003921.01.T01:intron 35.0%
GAGAAATCAGAGAAAGATGA+TGG - Chr1:70198798-70198817 MsG0180003921.01.T01:CDS 35.0%
GAGAAGCAACAATTTCGTAA+GGG - Chr1:70200945-70200964 MsG0180003921.01.T01:CDS 35.0%
GATCCTAAGGTGAAAATGTT+GGG - Chr1:70199917-70199936 MsG0180003921.01.T01:intron 35.0%
TAGATCGAATCATTGTGCTT+TGG + Chr1:70199428-70199447 None:intergenic 35.0%
TCATCTTTCTCTGATTTCTC+CGG + Chr1:70198798-70198817 None:intergenic 35.0%
TCTATGGAGAGATTGAGAAA+AGG - Chr1:70199444-70199463 MsG0180003921.01.T01:intron 35.0%
TCTTTAGTTGTACAATCTCG+TGG - Chr1:70200643-70200662 MsG0180003921.01.T01:CDS 35.0%
TGAGAAGCAACAATTTCGTA+AGG - Chr1:70200944-70200963 MsG0180003921.01.T01:CDS 35.0%
TGATCCTAAGGTGAAAATGT+TGG - Chr1:70199916-70199935 MsG0180003921.01.T01:intron 35.0%
TGGAAAATCCAAAACCTATG+TGG - Chr1:70200537-70200556 MsG0180003921.01.T01:CDS 35.0%
TTCATGGAAATTCTCAAGAG+AGG - Chr1:70198917-70198936 MsG0180003921.01.T01:CDS 35.0%
TTCCTGAAAGAAAGTGGTTA+CGG + Chr1:70198640-70198659 None:intergenic 35.0%
TTTAGTTGTACAATCTCGTG+GGG - Chr1:70200645-70200664 MsG0180003921.01.T01:CDS 35.0%
! AAATTGGAGGAGTACAAAGA+AGG - Chr1:70200305-70200324 MsG0180003921.01.T01:CDS 35.0%
! AATAGTAGTTGTAATGGAGG+AGG - Chr1:70198423-70198442 MsG0180003921.01.T01:three_prime_UTR 35.0%
! AATTACCGGAGGTAATCTTT+TGG + Chr1:70198681-70198700 None:intergenic 35.0%
! AATTGGAGGAGTACAAAGAA+GGG - Chr1:70200306-70200325 MsG0180003921.01.T01:CDS 35.0%
! ATCAGATTTGGTCAGAGTTT+CGG - Chr1:70201090-70201109 MsG0180003921.01.T01:CDS 35.0%
! ATTGTTGCTTCTCAAGTAGA+AGG + Chr1:70200938-70200957 None:intergenic 35.0%
! CAATAAGATTAGTCGGTCAT+TGG + Chr1:70198751-70198770 None:intergenic 35.0%
! GATTTGTTTGGAGTGATATG+TGG - Chr1:70201146-70201165 MsG0180003921.01.T01:intron 35.0%
! TAACCGTTGGACTTCAATTT+TGG + Chr1:70199176-70199195 None:intergenic 35.0%
! TCAAAATGATTGGTCCACAT+AGG + Chr1:70200554-70200573 None:intergenic 35.0%
! TCAATGCATCGTTTGGTAAT+TGG + Chr1:70200464-70200483 None:intergenic 35.0%
! TCTGAATCAGAGGATTTGTT+TGG - Chr1:70201134-70201153 MsG0180003921.01.T01:CDS 35.0%
! TTTTACTTTAGTGGTCATGG+TGG + Chr1:70198519-70198538 None:intergenic 35.0%
!! AATGGATTATGGAATGGTAG+AGG - Chr1:70199314-70199333 MsG0180003921.01.T01:intron 35.0%
!! ACCTCTAGTTTGTTACATTG+AGG + Chr1:70201314-70201333 None:intergenic 35.0%
!! ATCAATCACTTTTCTCATCC+TGG + Chr1:70199900-70199919 None:intergenic 35.0%
!! GACCAATCATTTTGACATCA+GGG - Chr1:70200559-70200578 MsG0180003921.01.T01:CDS 35.0%
!! TCAATCACTTTTCTCATCCT+GGG + Chr1:70199899-70199918 None:intergenic 35.0%
!! TCTTGACTCGTCTTTTTACA+AGG - Chr1:70200418-70200437 MsG0180003921.01.T01:CDS 35.0%
!! TTAGAGGCATTACAGCTTAA+AGG - Chr1:70199524-70199543 MsG0180003921.01.T01:CDS 35.0%
AAAACAAGTCCTTCCTGTTC+TGG - Chr1:70198872-70198891 MsG0180003921.01.T01:CDS 40.0%
AAGAGGGAGAGTAAAATTGG+TGG - Chr1:70201388-70201407 MsG0180003921.01.T01:CDS 40.0%
ACATGGGATGTATCGTGTAT+GGG + Chr1:70198361-70198380 None:intergenic 40.0%
AGTGAAGAATGAATTACCGG+AGG + Chr1:70198692-70198711 None:intergenic 40.0%
CAACACCAAAAGATTACCTC+CGG - Chr1:70198673-70198692 MsG0180003921.01.T01:CDS 40.0%
CAACTAAGTGACAGATTCGT+TGG + Chr1:70200679-70200698 None:intergenic 40.0%
CACTCTCAAGCATATCTTAG+AGG - Chr1:70199508-70199527 MsG0180003921.01.T01:CDS 40.0%
CAGTGGTTTCATTAGGACAA+TGG + Chr1:70199582-70199601 None:intergenic 40.0%
CATTTGTTCGGATCTCTCTA+GGG + Chr1:70198998-70199017 None:intergenic 40.0%
CGGAATCAGAAGATGATATG+TGG - Chr1:70200799-70200818 MsG0180003921.01.T01:CDS 40.0%
CGTTGCAGGAAATTCTTAAC+CGG - Chr1:70201018-70201037 MsG0180003921.01.T01:CDS 40.0%
CTGCTATCTAAAGAAAGCCT+AGG + Chr1:70198945-70198964 None:intergenic 40.0%
GAGAGATTGAGAAAAGGTTG+AGG - Chr1:70199450-70199469 MsG0180003921.01.T01:CDS 40.0%
GAGCCAAAATTGAAGTCCAA+CGG - Chr1:70199170-70199189 MsG0180003921.01.T01:intron 40.0%
GAGCTCGATCATCAAATCTT+GGG + Chr1:70199709-70199728 None:intergenic 40.0%
GATATGTGGTGTGTTGAAGA+AGG - Chr1:70201160-70201179 MsG0180003921.01.T01:intron 40.0%
GCAGAATAAGGGAACAATGA+TGG - Chr1:70199358-70199377 MsG0180003921.01.T01:intron 40.0%
TAAGTTGCTGAACAGCATAG+CGG - Chr1:70200352-70200371 MsG0180003921.01.T01:CDS 40.0%
TCATTAGGACAATGGGAGAT+TGG + Chr1:70199574-70199593 None:intergenic 40.0%
TGACATCAGGGTTAATGACT+TGG - Chr1:70200571-70200590 MsG0180003921.01.T01:CDS 40.0%
TGAGCTCGATCATCAAATCT+TGG + Chr1:70199710-70199729 None:intergenic 40.0%
TGGTGTGTTGAAGAAGGATA+TGG - Chr1:70201166-70201185 MsG0180003921.01.T01:intron 40.0%
TTCGAGCGGTTTAATAGAAC+CGG - Chr1:70199620-70199639 MsG0180003921.01.T01:CDS 40.0%
TTGATCTCTTTAACCGGTGA+CGG + Chr1:70198843-70198862 None:intergenic 40.0%
! AGAGAAAGATGATGGCAAAC+CGG - Chr1:70198806-70198825 MsG0180003921.01.T01:CDS 40.0%
! CATCGTTTGGTAATTGGTGA+AGG + Chr1:70200458-70200477 None:intergenic 40.0%
! CGTCTTTTTACAAGGATGAG+TGG - Chr1:70200426-70200445 MsG0180003921.01.T01:CDS 40.0%
! GAATCATTGTGCTTTGGTTC+AGG + Chr1:70199422-70199441 None:intergenic 40.0%
! TGCGTTTTCCTGAAAGAAAG+TGG + Chr1:70198646-70198665 None:intergenic 40.0%
! TGGAACTTAAGGAAGGTACA+AGG - Chr1:70198892-70198911 MsG0180003921.01.T01:CDS 40.0%
!! ATGACTTGGCATGACTTGTT+TGG - Chr1:70200585-70200604 MsG0180003921.01.T01:CDS 40.0%
!! GAAGCTATTCTCTGAAACTG+TGG + Chr1:70199963-70199982 None:intergenic 40.0%
!! GGACCAATCATTTTGACATC+AGG - Chr1:70200558-70200577 MsG0180003921.01.T01:CDS 40.0%
!! TGATTCTAGAAGAGTGTCTC+CGG - Chr1:70199811-70199830 MsG0180003921.01.T01:intron 40.0%
!! TGATTGGTCCACATAGGTTT+TGG + Chr1:70200548-70200567 None:intergenic 40.0%
AAAGCTTCAGAGATCTGCGT+CGG - Chr1:70199118-70199137 MsG0180003921.01.T01:CDS 45.0%
AATTCTCAAGAGAGGCTCCT+AGG - Chr1:70198925-70198944 MsG0180003921.01.T01:CDS 45.0%
ACGGTGGTAACCTTTGATTC+CGG + Chr1:70201040-70201059 None:intergenic 45.0%
AGAAAAGGTTGAGGATGCGT+GGG - Chr1:70199459-70199478 MsG0180003921.01.T01:CDS 45.0%
AGAATCATAGCGAGTCATCG+TGG - Chr1:70200091-70200110 MsG0180003921.01.T01:CDS 45.0%
AGAGCAGTTGTTGATGCCAA+AGG - Chr1:70198963-70198982 MsG0180003921.01.T01:CDS 45.0%
AGGAAGAGGGAAGCAGAATA+AGG - Chr1:70199346-70199365 MsG0180003921.01.T01:intron 45.0%
AGTCCAACGGTTACACTCAA+CGG - Chr1:70199183-70199202 MsG0180003921.01.T01:intron 45.0%
AGTTTCGGAGGATAAGAGAG+AGG - Chr1:70201105-70201124 MsG0180003921.01.T01:CDS 45.0%
ATGGGATGTATCGTGTATGG+GGG + Chr1:70198359-70198378 None:intergenic 45.0%
CAATTCACTTACCGACACAG+AGG - Chr1:70199991-70200010 MsG0180003921.01.T01:CDS 45.0%
CACTGAGATCTTCTTCTCCT+CGG - Chr1:70199597-70199616 MsG0180003921.01.T01:CDS 45.0%
CAGTTGTTGATGCCAAAGGA+GGG - Chr1:70198967-70198986 MsG0180003921.01.T01:CDS 45.0%
CATCGAACGACTCGTATTCA+AGG - Chr1:70201247-70201266 MsG0180003921.01.T01:intron 45.0%
CATGGGATGTATCGTGTATG+GGG + Chr1:70198360-70198379 None:intergenic 45.0%
CCTTAAGTTCCAGAACAGGA+AGG + Chr1:70198884-70198903 None:intergenic 45.0%
CCTTCCTTAAGTTCCAGAAC+AGG + Chr1:70198888-70198907 None:intergenic 45.0%
CTAGACCGAACAGAAGAATG+CGG + Chr1:70199662-70199681 None:intergenic 45.0%
GAACGAGTTACAACCTAGTC+CGG - Chr1:70200388-70200407 MsG0180003921.01.T01:CDS 45.0%
GAAGATGATATGTGGAGTGC+AGG - Chr1:70200807-70200826 MsG0180003921.01.T01:CDS 45.0%
GACATGGGATGTATCGTGTA+TGG + Chr1:70198362-70198381 None:intergenic 45.0%
GACCGTAACCACTTTCTTTC+AGG - Chr1:70198635-70198654 MsG0180003921.01.T01:CDS 45.0%
GACTCATTACCATCGGATTC+CGG - Chr1:70199092-70199111 MsG0180003921.01.T01:CDS 45.0%
GAGAGGAGACACATCAGATT+TGG - Chr1:70201078-70201097 MsG0180003921.01.T01:CDS 45.0%
GCAACTGCTAATGAGAACGA+CGG - Chr1:70199017-70199036 MsG0180003921.01.T01:CDS 45.0%
GCATTTGTTCGGATCTCTCT+AGG + Chr1:70198999-70199018 None:intergenic 45.0%
GGAAGAGGGAAGCAGAATAA+GGG - Chr1:70199347-70199366 MsG0180003921.01.T01:intron 45.0%
GGGTCTTGACTCATTACCAT+CGG - Chr1:70199085-70199104 MsG0180003921.01.T01:CDS 45.0%
GTTACAACCTAGTCCGGTAT+CGG - Chr1:70200394-70200413 MsG0180003921.01.T01:CDS 45.0%
GTTGAAGAAGGATATGGCAG+AGG - Chr1:70201172-70201191 MsG0180003921.01.T01:intron 45.0%
GTTTCGGAGGATAAGAGAGA+GGG - Chr1:70201106-70201125 MsG0180003921.01.T01:CDS 45.0%
TACACTCAACGGAGCAATGT+CGG - Chr1:70199194-70199213 MsG0180003921.01.T01:intron 45.0%
TCACAAACAGATGGGATGCA+TGG - Chr1:70198592-70198611 MsG0180003921.01.T01:CDS 45.0%
TGTCGAGATCTTGAGAAGGT+TGG + Chr1:70199490-70199509 None:intergenic 45.0%
TTCTCTGATTTCTCCGGTGA+CGG + Chr1:70198792-70198811 None:intergenic 45.0%
! AATGGTAGAGGTATGGAAGG+AGG - Chr1:70199326-70199345 MsG0180003921.01.T01:intron 45.0%
! AGATTAGTCGGTCATTGGGT+CGG + Chr1:70198746-70198765 None:intergenic 45.0%
! AGATTTGGTCAGAGTTTCGG+AGG - Chr1:70201093-70201112 MsG0180003921.01.T01:CDS 45.0%
! AGGAAGGTACAAGGTCTTCA+TGG - Chr1:70198901-70198920 MsG0180003921.01.T01:CDS 45.0%
! CTCTGTGTCGGTAAGTGAAT+TGG + Chr1:70199993-70200012 None:intergenic 45.0%
! GCACCCAACATTTTCACCTT+AGG + Chr1:70199923-70199942 None:intergenic 45.0%
! TGGAATGGTAGAGGTATGGA+AGG - Chr1:70199323-70199342 MsG0180003921.01.T01:intron 45.0%
! TGTGTCGGTAAGTGAATTGG+AGG + Chr1:70199990-70200009 None:intergenic 45.0%
!! AGAGTGTCGAGATCTTGAGA+AGG + Chr1:70199494-70199513 None:intergenic 45.0%
!! CCTGTTCTGGAACTTAAGGA+AGG - Chr1:70198885-70198904 MsG0180003921.01.T01:CDS 45.0%
!! CCTTCCTGTTCTGGAACTTA+AGG - Chr1:70198881-70198900 MsG0180003921.01.T01:CDS 45.0%
!! GTTGATTTTCGACACGTTGC+AGG - Chr1:70201004-70201023 MsG0180003921.01.T01:CDS 45.0%
!!! AAGCAGACTCTGCTGTTTTG+AGG + Chr1:70200624-70200643 None:intergenic 45.0%
!!! TTTGGTTTTACAGCCGTCAC+CGG - Chr1:70198776-70198795 MsG0180003921.01.T01:CDS 45.0%
AAACAGATGGGATGCATGGC+TGG - Chr1:70198596-70198615 MsG0180003921.01.T01:CDS 50.0%
AAGTCGATCTCTCGAGACTC+TGG + Chr1:70199147-70199166 None:intergenic 50.0%
AGAAGGAAAATCCGAGGAGG+AGG - Chr1:70200830-70200849 MsG0180003921.01.T01:CDS 50.0%
AGATGAGTGGTTGGGGTGAA+TGG - Chr1:70201195-70201214 MsG0180003921.01.T01:intron 50.0%
AGGAGAAGGAAAATCCGAGG+AGG - Chr1:70200827-70200846 MsG0180003921.01.T01:CDS 50.0%
ATCCGAGGAGGAGGCAAAAT+TGG - Chr1:70200839-70200858 MsG0180003921.01.T01:CDS 50.0%
CGAGGAGAAGAAGATCTCAG+TGG + Chr1:70199599-70199618 None:intergenic 50.0%
CGGAGGAGGAGAATCATAAC+CGG + Chr1:70199642-70199661 None:intergenic 50.0%
CTATTAAACCGCTCGAACCG+AGG + Chr1:70199617-70199636 None:intergenic 50.0%
CTCCTCCGCATTCTTCTGTT+CGG - Chr1:70199654-70199673 MsG0180003921.01.T01:intron 50.0%
GAAAATGTTGGGTGCAGCAG+AGG - Chr1:70199928-70199947 MsG0180003921.01.T01:intron 50.0%
GACGAGTCAAGAACCGATAC+CGG + Chr1:70200410-70200429 None:intergenic 50.0%
GAGAAAAGGTTGAGGATGCG+TGG - Chr1:70199458-70199477 MsG0180003921.01.T01:CDS 50.0%
GAGGGAGGAATCTGAATCAG+AGG - Chr1:70201124-70201143 MsG0180003921.01.T01:CDS 50.0%
GAGGTATGGAAGGAGGAAGA+GGG - Chr1:70199333-70199352 MsG0180003921.01.T01:intron 50.0%
GATATGGCAGAGGAGATGAG+TGG - Chr1:70201182-70201201 MsG0180003921.01.T01:intron 50.0%
GATATGTGGAGTGCAGGAGA+AGG - Chr1:70200813-70200832 MsG0180003921.01.T01:CDS 50.0%
GCAGTTGTTGATGCCAAAGG+AGG - Chr1:70198966-70198985 MsG0180003921.01.T01:CDS 50.0%
GGAATCAAAGGTTACCACCG+TGG - Chr1:70201039-70201058 MsG0180003921.01.T01:CDS 50.0%
GTCGGTAAGTGAATTGGAGG+TGG + Chr1:70199987-70200006 None:intergenic 50.0%
TCAAAGGTTACCACCGTGGA+AGG - Chr1:70201043-70201062 MsG0180003921.01.T01:CDS 50.0%
TCAAGAACCGATACCGGACT+AGG + Chr1:70200404-70200423 None:intergenic 50.0%
TGCAGGAGAAGGAAAATCCG+AGG - Chr1:70200824-70200843 MsG0180003921.01.T01:CDS 50.0%
! AGAGGTATGGAAGGAGGAAG+AGG - Chr1:70199332-70199351 MsG0180003921.01.T01:intron 50.0%
! CAGCATAGCGGAGATAACAG+CGG - Chr1:70200364-70200383 MsG0180003921.01.T01:CDS 50.0%
! CGGAGGAGGGTTAGTAATGA+GGG - Chr1:70199785-70199804 MsG0180003921.01.T01:intron 50.0%
! CTCCAATTTTGCCTCCTCCT+CGG + Chr1:70200844-70200863 None:intergenic 50.0%
! TGGAGGAGTACAAAGAAGGG+AGG - Chr1:70200309-70200328 MsG0180003921.01.T01:CDS 50.0%
!! AGATCTCTGAAGCTTTGCGC+CGG + Chr1:70199114-70199133 None:intergenic 50.0%
!! GGAGATGGGAGATGTCGTTT+TGG - Chr1:70201223-70201242 MsG0180003921.01.T01:intron 50.0%
AAGGTTACCACCGTGGAAGG+CGG - Chr1:70201046-70201065 MsG0180003921.01.T01:CDS 55.0%
CAAAAGCTTCGACGCTGCAG+AGG - Chr1:70200979-70200998 MsG0180003921.01.T01:CDS 55.0%
CGAACAGAAGAATGCGGAGG+AGG + Chr1:70199656-70199675 None:intergenic 55.0%
CGAGAAACTCAAGTCCGACC+CGG - Chr1:70199738-70199757 MsG0180003921.01.T01:intron 55.0%
CGAGGAGGAGGCAAAATTGG+AGG - Chr1:70200842-70200861 MsG0180003921.01.T01:CDS 55.0%
GACCGAACAGAAGAATGCGG+AGG + Chr1:70199659-70199678 None:intergenic 55.0%
GAGTGGTTGGGGTGAATGGA+CGG - Chr1:70201199-70201218 MsG0180003921.01.T01:intron 55.0%
GCAGAGGAGATGAGTGGTTG+GGG - Chr1:70201188-70201207 MsG0180003921.01.T01:intron 55.0%
GCTCCGTTGAGTGTAACCGT+TGG + Chr1:70199189-70199208 None:intergenic 55.0%
GGCAGAGGAGATGAGTGGTT+GGG - Chr1:70201187-70201206 MsG0180003921.01.T01:intron 55.0%
GGTGAATGGACGGTGGAGAT+GGG - Chr1:70201209-70201228 MsG0180003921.01.T01:intron 55.0%
TCGGAGGATAAGAGAGAGGG+AGG - Chr1:70201109-70201128 MsG0180003921.01.T01:CDS 55.0%
TGGCAGAGGAGATGAGTGGT+TGG - Chr1:70201186-70201205 MsG0180003921.01.T01:intron 55.0%
TGGGTGCAGCAGAGGATGAA+TGG - Chr1:70199936-70199955 MsG0180003921.01.T01:CDS 55.0%
! CTTCTTCTCCTCGGTTCGAG+CGG - Chr1:70199606-70199625 MsG0180003921.01.T01:CDS 55.0%
! GCGGAGGAGGGTTAGTAATG+AGG - Chr1:70199784-70199803 MsG0180003921.01.T01:intron 55.0%
! TCAACGGAGCAATGTCGGCT+CGG - Chr1:70199199-70199218 MsG0180003921.01.T01:intron 55.0%
! TCTAGGGTGAAGCCCTCCTT+TGG + Chr1:70198982-70199001 None:intergenic 55.0%
AAGCTTCGACGCTGCAGAGG+CGG - Chr1:70200982-70201001 MsG0180003921.01.T01:CDS 60.0%
ACCGTGGAAGGCGGTGTCTA+AGG - Chr1:70201055-70201074 MsG0180003921.01.T01:CDS 60.0%
ACTGCTCAGACAGCGACAGG+AGG - Chr1:70199869-70199888 MsG0180003921.01.T01:intron 60.0%
AGCTTTGCGCCGGAATCCGA+TGG + Chr1:70199104-70199123 None:intergenic 60.0%
ATGTCCCGAACGTGGAGACG+CGG - Chr1:70199765-70199784 MsG0180003921.01.T01:intron 60.0%
CACGTTCGGGACATTCCTCC+GGG + Chr1:70199759-70199778 None:intergenic 60.0%
CCACGTTCGGGACATTCCTC+CGG + Chr1:70199760-70199779 None:intergenic 60.0%
CCCTTAGACACCGCCTTCCA+CGG + Chr1:70201059-70201078 None:intergenic 60.0%
CCGTGGAAGGCGGTGTCTAA+GGG - Chr1:70201056-70201075 MsG0180003921.01.T01:CDS 60.0%
CGGTCATTGGGTCGGATACC+AGG + Chr1:70198738-70198757 None:intergenic 60.0%
CTCAAGTTCCGACGAGCACG+AGG + Chr1:70199686-70199705 None:intergenic 60.0%
GAAACTCAAGTCCGACCCGG+AGG - Chr1:70199741-70199760 MsG0180003921.01.T01:intron 60.0%
GAAGGCGGTGTCTAAGGGAG+AGG - Chr1:70201061-70201080 MsG0180003921.01.T01:CDS 60.0%
GCAACTGCTCAGACAGCGAC+AGG - Chr1:70199866-70199885 MsG0180003921.01.T01:intron 60.0%
GGCGTTGTCATCACCGTCAC+CGG - Chr1:70198827-70198846 MsG0180003921.01.T01:CDS 60.0%
GGGTGAATGGACGGTGGAGA+TGG - Chr1:70201208-70201227 MsG0180003921.01.T01:intron 60.0%
GGTCTAGTCCTCGTGCTCGT+CGG - Chr1:70199675-70199694 MsG0180003921.01.T01:intron 60.0%
TGGTTGGGGTGAATGGACGG+TGG - Chr1:70201202-70201221 MsG0180003921.01.T01:intron 60.0%
TTAGACACCGCCTTCCACGG+TGG + Chr1:70201056-70201075 None:intergenic 60.0%
TTCGGGACATTCCTCCGGGT+CGG + Chr1:70199755-70199774 None:intergenic 60.0%
! GGTGACGGTGATGACAACGC+CGG + Chr1:70198828-70198847 None:intergenic 60.0%
!! CAACGGAGCAATGTCGGCTC+GGG - Chr1:70199200-70199219 MsG0180003921.01.T01:intron 60.0%
CAGCGACAGGAGGATCTCCC+AGG - Chr1:70199879-70199898 MsG0180003921.01.T01:intron 65.0%
CCGGAGGAATGTCCCGAACG+TGG - Chr1:70199757-70199776 MsG0180003921.01.T01:intron 65.0%
CTCCTCCGCGTCTCCACGTT+CGG + Chr1:70199773-70199792 None:intergenic 65.0%
GAACGTGGAGACGCGGAGGA+GGG - Chr1:70199772-70199791 MsG0180003921.01.T01:intron 65.0%
TCCTCCGCGTCTCCACGTTC+GGG + Chr1:70199772-70199791 None:intergenic 65.0%
CGAACGTGGAGACGCGGAGG+AGG - Chr1:70199771-70199790 MsG0180003921.01.T01:intron 70.0%
TCCCGAACGTGGAGACGCGG+AGG - Chr1:70199768-70199787 MsG0180003921.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 70198347 70201598 70198347 ID=MsG0180003921.01;Name=MsG0180003921.01
Chr1 mRNA 70198347 70201598 70198347 ID=MsG0180003921.01.T01;Parent=MsG0180003921.01;Name=MsG0180003921.01.T01;_AED=0.19;_eAED=0.19;_QI=174|1|1|1|0.66|0.75|4|240|721
Chr1 exon 70198347 70199155 70198347 ID=MsG0180003921.01.T01:exon:6109;Parent=MsG0180003921.01.T01
Chr1 exon 70199448 70199646 70199448 ID=MsG0180003921.01.T01:exon:6108;Parent=MsG0180003921.01.T01
Chr1 exon 70199933 70201156 70199933 ID=MsG0180003921.01.T01:exon:6107;Parent=MsG0180003921.01.T01
Chr1 exon 70201251 70201598 70201251 ID=MsG0180003921.01.T01:exon:6106;Parent=MsG0180003921.01.T01
Chr1 five_prime_UTR 70201425 70201598 70201425 ID=MsG0180003921.01.T01:five_prime_utr;Parent=MsG0180003921.01.T01
Chr1 CDS 70201251 70201424 70201251 ID=MsG0180003921.01.T01:cds;Parent=MsG0180003921.01.T01
Chr1 CDS 70199933 70201156 70199933 ID=MsG0180003921.01.T01:cds;Parent=MsG0180003921.01.T01
Chr1 CDS 70199448 70199646 70199448 ID=MsG0180003921.01.T01:cds;Parent=MsG0180003921.01.T01
Chr1 CDS 70198587 70199155 70198587 ID=MsG0180003921.01.T01:cds;Parent=MsG0180003921.01.T01
Chr1 three_prime_UTR 70198347 70198586 70198347 ID=MsG0180003921.01.T01:three_prime_utr;Parent=MsG0180003921.01.T01
Gene Sequence

>MsG0180003921.01.T01

ATGACCACTAAAGTAAAATTAAACAGCAAAGAAGAAATGATAGACATTGATCACAACTTAGAAAAACATATTCACAAACAGATGGGATGCATGGCTGGTTTGTTTCAAATCTTCGACCGTAACCACTTTCTTTCAGGAAAACGCATCTACAACAACACCAAAAGATTACCTCCGCCGTCACCGGAGAAATCAGAGAAAGATGATGGCAAACCGGCGTTGTCATCACCGTCACCGGTTAAAGAGATCAAAAGTGAAACAAAACAAGTCCTTCCTGTTCTGGAACTTAAGGAAGGTACAAGGTCTTCATGGAAATTCTCAAGAGAGGCTCCTAGGCTTTCTTTAGATAGCAGAGCAGTTGTTGATGCCAAAGGAGGGCTTCACCCTAGAGAGATCCGAACAAATGCAACTGCTAATGAGAACGACGGTGATAAACAGCGTCGTTCTACTAGCAGTGTTATTGTTAGATTAATGGGTCTTGACTCATTACCATCGGATTCCGGCGCAAAGCTTCAGAGATCTGCGTCGGAGTCCAGAGTCTCGAGAGATCGACTTTCAGAGCCAAAATTGAAGTCCAACGGTTACACTCAACGGAGCAATGTCGGCTCGGGCCAGATGAATAATCATAATCATCATCGTTCTAATACTAATTCTAATGTTGTTAATGTTAATAATAATGTTAATTCTTATGGTAACATTGATAATGGATTATGGAATGGTAGAGGTATGGAAGGAGGAAGAGGGAAGCAGAATAAGGGAACAATGATGGTGCAAAAGAAGAGTTTCTATGATTCTGCTGATTTCTTTCCTGAACCAAAGCACAATGATTCGATCTATGGAGAGATTGAGAAAAGGTTGAGGATGCGTGGGATTAACCAACCTTCTCAAGATCTCGACACTCTCAAGCATATCTTAGAGGCATTACAGCTTAAAGGTCTGCTTCATTCACAAAAACATGACCAATCTCCCATTGTCCTAATGAAACCACTGAGATCTTCTTCTCCTCGGTTCGAGCGGTTTAATAGAACCGGTTATGATTCTCCTCCTCCGCATTCTTCTGTTCGGTCTAGTCCTCGTGCTCGTCGGAACTTGAGCCCAAGATTTGATGATCGAGCTCAAGTTAATTCGAGAAACTCAAGTCCGACCCGGAGGAATGTCCCGAACGTGGAGACGCGGAGGAGGGTTAGTAATGAGGGTGTTGATTCTAGAAGAGTGTCTCCGGTTAATTCACCGAAGATAAGTTCAAGAAGAAATGCAACTGCTCAGACAGCGACAGGAGGATCTCCCAGGATGAGAAAAGTGATTGATCCTAAGGTGAAAATGTTGGGTGCAGCAGAGGATGAATGGTCCACAGTTTCAGAGAATAGCTTCACCACCTCCAATTCACTTACCGACACAGAGAAGTATAAATTGGAGGAGTACAAAGAAGGGAGGAATCTGCTTGATAGATGTGATAAGTTGCTGAACAGCATAGCGGAGATAACAGCGGCGAACGAGTTACAACCTAGTCCGGTATCGGTTCTTGACTCGTCTTTTTACAAGGATGAGTGGTGCTCACCTTCACCAATTACCAAACGATGCATTGATTACAATTACAAAGATCAATCTACGGAATCAGAAGATGATATGTGGAGTGCAGGAGAAGGAAAATCCGAGGAGGAGGCAAAATTGGAGGATTGTGATTTTGTTTATGTGTCGGAGATTCTACGAGTTTCTAGTTACTTGCCTGAAGATTGTGACATTTTCCTTCTACTTGAGAAGCAACAATTTCGTAAGGGGAAGAATACTTCAAAAGCTTCGACGCTGCAGAGGCGGTTGATTTTCGACACGTTGCAGGAAATTCTTAACCGGAATCAAAGGTTACCACCGTGGAAGGCGGTGTCTAAGGGAGAGGAGACACATCAGATTTGGTCAGAGTTTCGGAGGATAAGAGAGAGGGAGGAATCTGAATCAGAGGATTTGTTTGGAGTGATATGTGGTGTGTTGAAGAAGGATATGGCAGAGGAGATGAGTGGTTGGGGTGAATGGACGGTGGAGATGGGAGATGTCGTTTTGGACATCGAACGACTCGTATTCAAGGATTTAATTGGCGAAACTATACAAGATCTTGCTTCATTTGCACCTCAATGTAACAAACTAGAGGTGCTCCGAAGAAAGCTTGTGTTTTGA
Protein sequence

>MsG0180003921.01.T01

MTTKVKLNSKEEMIDIDHNLEKHIHKQMGCMAGLFQIFDRNHFLSGKRIYNNTKRLPPPSPEKSEKDDGKPALSSPSPVKEIKSETKQVLPVLELKEGTRSSWKFSREAPRLSLDSRAVVDAKGGLHPREIRTNATANENDGDKQRRSTSSVIVRLMGLDSLPSDSGAKLQRSASESRVSRDRLSEPKLKSNGYTQRSNVGSGQMNNHNHHRSNTNSNVVNVNNNVNSYGNIDNGLWNGRGMEGGRGKQNKGTMMVQKKSFYDSADFFPEPKHNDSIYGEIEKRLRMRGINQPSQDLDTLKHILEALQLKGLLHSQKHDQSPIVLMKPLRSSSPRFERFNRTGYDSPPPHSSVRSSPRARRNLSPRFDDRAQVNSRNSSPTRRNVPNVETRRRVSNEGVDSRRVSPVNSPKISSRRNATAQTATGGSPRMRKVIDPKVKMLGAAEDEWSTVSENSFTTSNSLTDTEKYKLEEYKEGRNLLDRCDKLLNSIAEITAANELQPSPVSVLDSSFYKDEWCSPSPITKRCIDYNYKDQSTESEDDMWSAGEGKSEEEAKLEDCDFVYVSEILRVSSYLPEDCDIFLLLEKQQFRKGKNTSKASTLQRRLIFDTLQEILNRNQRLPPWKAVSKGEETHQIWSEFRRIREREESESEDLFGVICGVLKKDMAEEMSGWGEWTVEMGDVVLDIERLVFKDLIGETIQDLASFAPQCNKLEVLRRKLVF*