AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014794.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014794.01.T01 MTR_3g464370 94.275 524 21 1 6 520 70 593 0.0 959
MsG0380014794.01.T01 MTR_3g464370 39.108 381 180 8 166 501 2 375 1.73e-72 241
MsG0380014794.01.T01 MTR_3g464370 44.737 152 73 3 362 504 1 150 1.31e-31 129
MsG0380014794.01.T01 MTR_3g464370 46.988 83 43 1 5 86 495 577 3.28e-16 82.0
MsG0380014794.01.T01 MTR_5g071200 68.550 531 149 5 5 520 77 604 0.0 687
MsG0380014794.01.T01 MTR_5g071200 40.209 383 166 10 172 501 16 388 3.06e-75 249
MsG0380014794.01.T01 MTR_5g071200 45.139 144 68 3 368 502 15 156 1.81e-29 122
MsG0380014794.01.T01 MTR_2g100595 45.113 133 73 0 175 307 28 160 7.60e-31 119
MsG0380014794.01.T01 MTR_2g100595 38.849 139 74 3 372 501 28 164 2.20e-21 92.4
MsG0380014794.01.T01 MTR_2g100595 45.161 93 47 1 3 95 84 172 1.18e-19 87.4
MsG0380014794.01.T01 MTR_2g100595 45.113 133 73 0 175 307 24 156 9.59e-31 118
MsG0380014794.01.T01 MTR_2g100595 38.849 139 74 3 372 501 24 160 2.10e-21 92.4
MsG0380014794.01.T01 MTR_2g100595 45.161 93 47 1 3 95 80 168 1.30e-19 87.4
MsG0380014794.01.T01 MTR_2g100595 45.113 133 73 0 175 307 13 145 1.36e-30 117
MsG0380014794.01.T01 MTR_2g100595 38.849 139 74 3 372 501 13 149 1.29e-21 92.8
MsG0380014794.01.T01 MTR_2g100595 45.161 93 47 1 3 95 69 157 1.40e-19 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014794.01.T01 AT1G19715 54.120 534 214 9 8 520 48 571 7.57e-177 510
MsG0380014794.01.T01 AT1G19715 37.183 355 174 8 190 501 2 350 6.12e-54 191
MsG0380014794.01.T01 AT1G19715 42.063 126 62 3 386 502 1 124 3.47e-18 88.2
MsG0380014794.01.T01 AT1G19715 54.120 534 214 9 8 520 78 601 2.27e-176 510
MsG0380014794.01.T01 AT1G19715 37.922 385 189 9 161 501 2 380 1.55e-62 215
MsG0380014794.01.T01 AT1G19715 44.218 147 71 3 365 502 10 154 7.94e-27 114
MsG0380014794.01.T01 AT1G19715 54.120 534 214 9 8 520 72 595 2.56e-176 509
MsG0380014794.01.T01 AT1G19715 38.360 378 183 9 168 501 3 374 2.88e-62 214
MsG0380014794.01.T01 AT1G19715 43.333 150 74 3 362 502 1 148 8.10e-27 114
MsG0380014794.01.T01 AT1G73040 45.985 137 74 0 175 311 16 152 2.60e-34 127
MsG0380014794.01.T01 AT1G73040 40.288 139 72 3 372 501 16 152 3.37e-24 99.8
MsG0380014794.01.T01 AT1G73040 47.959 98 48 1 5 102 74 168 4.84e-24 99.4
MsG0380014794.01.T01 AT2G39310 29.909 331 175 8 178 499 137 419 3.95e-28 117
MsG0380014794.01.T01 AT2G39310 23.881 335 167 9 178 501 12 269 7.11e-17 83.6
MsG0380014794.01.T01 AT2G39310 30.539 167 98 4 158 323 278 427 2.09e-11 66.2
MsG0380014794.01.T01 AT2G39310 29.909 331 175 8 178 499 167 449 5.48e-28 117
MsG0380014794.01.T01 AT2G39310 26.393 341 181 12 178 501 12 299 2.19e-21 97.4
MsG0380014794.01.T01 AT2G39310 30.539 167 98 4 158 323 308 457 2.29e-11 66.2
MsG0380014794.01.T01 AT2G39310 29.909 331 175 8 178 499 167 449 5.48e-28 117
MsG0380014794.01.T01 AT2G39310 26.393 341 181 12 178 501 12 299 2.19e-21 97.4
MsG0380014794.01.T01 AT2G39310 30.539 167 98 4 158 323 308 457 2.29e-11 66.2
MsG0380014794.01.T01 AT2G39310 29.909 331 175 8 178 499 167 449 5.48e-28 117
MsG0380014794.01.T01 AT2G39310 26.393 341 181 12 178 501 12 299 2.19e-21 97.4
MsG0380014794.01.T01 AT2G39310 30.539 167 98 4 158 323 308 457 2.29e-11 66.2
MsG0380014794.01.T01 AT3G16470 27.679 336 179 11 178 501 9 292 4.56e-25 105
MsG0380014794.01.T01 AT3G16470 27.679 336 179 11 178 501 9 292 4.56e-25 105
MsG0380014794.01.T01 AT3G16470 27.429 350 190 11 164 501 149 446 5.30e-25 108
MsG0380014794.01.T01 AT3G16470 27.679 336 179 11 178 501 9 292 8.00e-25 105
MsG0380014794.01.T01 AT2G39330 24.754 509 238 15 8 499 118 498 1.99e-24 107
MsG0380014794.01.T01 AT2G39330 25.620 363 203 11 155 501 37 348 7.28e-19 90.1
MsG0380014794.01.T01 AT2G39330 33.987 153 82 6 374 511 59 207 2.24e-12 69.7
MsG0380014794.01.T01 AT2G39330 33.824 136 88 2 178 312 367 501 6.39e-12 68.2
MsG0380014794.01.T01 AT1G52030 27.434 339 179 11 175 501 6 289 6.37e-23 102
MsG0380014794.01.T01 AT1G52030 27.434 339 179 11 175 501 6 289 6.40e-23 103
MsG0380014794.01.T01 AT1G52030 34.559 136 88 1 178 312 497 632 4.04e-17 85.1
MsG0380014794.01.T01 AT1G52030 34.074 135 79 2 375 500 497 630 3.76e-16 82.0
MsG0380014794.01.T01 AT1G52030 44.156 77 43 0 6 82 554 630 1.29e-12 70.9
MsG0380014794.01.T01 AT1G52030 27.434 339 179 11 175 501 6 289 6.40e-23 103
MsG0380014794.01.T01 AT1G52030 34.559 136 88 1 178 312 497 632 4.04e-17 85.1
MsG0380014794.01.T01 AT1G52030 34.074 135 79 2 375 500 497 630 3.76e-16 82.0
MsG0380014794.01.T01 AT1G52030 44.156 77 43 0 6 82 554 630 1.29e-12 70.9
MsG0380014794.01.T01 AT2G39330 24.558 509 239 16 8 499 70 450 4.44e-22 99.4
MsG0380014794.01.T01 AT2G39330 26.100 341 185 11 177 501 11 300 1.21e-18 89.0
MsG0380014794.01.T01 AT2G39330 33.987 153 82 6 374 511 11 159 2.78e-12 69.3
MsG0380014794.01.T01 AT2G39330 33.824 136 88 2 178 312 319 453 4.32e-12 68.6
MsG0380014794.01.T01 AT2G39330 24.558 509 239 16 8 499 70 450 4.44e-22 99.4
MsG0380014794.01.T01 AT2G39330 26.100 341 185 11 177 501 11 300 1.21e-18 89.0
MsG0380014794.01.T01 AT2G39330 33.987 153 82 6 374 511 11 159 2.78e-12 69.3
MsG0380014794.01.T01 AT2G39330 33.824 136 88 2 178 312 319 453 4.32e-12 68.6
MsG0380014794.01.T01 AT3G16460 26.866 335 182 12 180 501 262 546 9.32e-22 99.8
MsG0380014794.01.T01 AT3G16460 24.377 361 205 10 154 501 395 700 1.65e-20 95.9
MsG0380014794.01.T01 AT3G16460 43.038 79 44 1 5 83 623 700 8.44e-12 68.2
MsG0380014794.01.T01 AT3G16460 26.866 335 182 12 180 501 262 546 9.32e-22 99.8
MsG0380014794.01.T01 AT3G16460 24.377 361 205 10 154 501 395 700 1.65e-20 95.9
MsG0380014794.01.T01 AT3G16460 43.038 79 44 1 5 83 623 700 8.44e-12 68.2
MsG0380014794.01.T01 AT5G35940 27.586 377 201 11 140 501 120 439 1.04e-21 98.2
MsG0380014794.01.T01 AT5G35940 33.858 127 82 2 5 129 209 335 4.01e-11 65.5
MsG0380014794.01.T01 AT5G35950 27.711 332 173 10 178 498 9 284 8.55e-20 92.4
MsG0380014794.01.T01 AT5G35950 27.083 336 183 10 178 501 154 439 1.56e-12 70.1
MsG0380014794.01.T01 AT1G52110 25.490 561 284 24 12 501 112 609 1.09e-19 93.2
MsG0380014794.01.T01 AT1G52110 35.252 139 86 4 178 312 472 610 7.85e-12 68.2
MsG0380014794.01.T01 AT3G16430 24.926 337 188 9 178 502 9 292 1.19e-19 90.1
MsG0380014794.01.T01 AT3G16430 44.156 77 43 0 8 84 216 292 5.01e-12 67.4
MsG0380014794.01.T01 AT3G16430 24.926 337 188 9 178 502 9 292 1.19e-19 90.1
MsG0380014794.01.T01 AT3G16430 44.156 77 43 0 8 84 216 292 5.01e-12 67.4
MsG0380014794.01.T01 AT3G16410 26.488 336 181 10 178 501 9 290 1.27e-19 92.8
MsG0380014794.01.T01 AT3G16440 25.205 365 200 10 149 501 15 318 4.29e-19 89.0
MsG0380014794.01.T01 AT3G16440 32.353 136 91 1 178 312 184 319 1.83e-15 77.8
MsG0380014794.01.T01 AT3G16440 43.038 79 45 0 5 83 240 318 2.08e-13 71.6
MsG0380014794.01.T01 AT1G33790 27.083 336 182 10 178 501 158 442 7.54e-19 89.7
MsG0380014794.01.T01 AT1G33790 32.353 136 91 1 178 312 308 443 2.00e-12 69.7
MsG0380014794.01.T01 AT1G33790 27.083 336 182 10 178 501 158 442 7.75e-19 89.4
MsG0380014794.01.T01 AT1G33790 32.353 136 91 1 178 312 308 443 2.06e-12 69.7
MsG0380014794.01.T01 AT3G16440 25.893 336 188 9 178 501 9 295 7.81e-19 87.8
MsG0380014794.01.T01 AT3G16440 32.353 136 91 1 178 312 161 296 1.82e-15 77.8
MsG0380014794.01.T01 AT3G16440 43.038 79 45 0 5 83 217 295 2.03e-13 71.6
MsG0380014794.01.T01 AT1G33790 27.083 336 182 10 178 501 158 442 8.96e-19 89.4
MsG0380014794.01.T01 AT1G33790 32.353 136 91 1 178 312 308 443 2.64e-12 69.3
MsG0380014794.01.T01 AT1G33790 27.083 336 182 10 178 501 158 442 1.14e-18 89.0
MsG0380014794.01.T01 AT1G33790 32.353 136 91 1 178 312 308 443 3.56e-12 68.9
MsG0380014794.01.T01 AT1G33790 27.083 336 182 10 178 501 158 442 1.19e-18 89.0
MsG0380014794.01.T01 AT1G33790 32.353 136 91 1 178 312 308 443 1.88e-12 69.7
MsG0380014794.01.T01 AT1G52050 28.402 338 168 13 178 501 30 307 1.38e-18 87.0
MsG0380014794.01.T01 AT3G16420 36.029 136 86 1 177 311 158 293 1.46e-18 86.7
MsG0380014794.01.T01 AT3G16420 31.884 138 84 2 374 502 158 294 2.97e-15 77.0
MsG0380014794.01.T01 AT3G16420 46.753 77 41 0 8 84 218 294 2.62e-13 71.2
MsG0380014794.01.T01 AT3G16420 36.029 136 86 1 177 311 158 293 1.46e-18 86.7
MsG0380014794.01.T01 AT3G16420 31.884 138 84 2 374 502 158 294 2.97e-15 77.0
MsG0380014794.01.T01 AT3G16420 46.753 77 41 0 8 84 218 294 2.62e-13 71.2
MsG0380014794.01.T01 AT3G16420 36.029 136 86 1 177 311 158 293 1.46e-18 86.7
MsG0380014794.01.T01 AT3G16420 31.884 138 84 2 374 502 158 294 2.97e-15 77.0
MsG0380014794.01.T01 AT3G16420 46.753 77 41 0 8 84 218 294 2.62e-13 71.2
MsG0380014794.01.T01 AT1G33790 27.083 336 182 10 178 501 458 742 1.86e-18 89.4
MsG0380014794.01.T01 AT1G33790 32.353 136 91 1 178 312 608 743 4.49e-12 69.3
MsG0380014794.01.T01 AT1G60110 26.190 336 180 9 184 501 206 491 7.82e-18 86.7
MsG0380014794.01.T01 AT1G60110 34.559 136 88 1 178 312 357 492 1.95e-14 76.3
MsG0380014794.01.T01 AT1G60110 26.190 336 180 9 184 501 332 617 8.27e-18 87.0
MsG0380014794.01.T01 AT1G60110 34.559 136 88 1 178 312 483 618 1.61e-14 76.6
MsG0380014794.01.T01 AT5G49850 25.740 338 176 11 184 501 308 590 9.65e-18 87.0
MsG0380014794.01.T01 AT1G60110 26.190 336 180 9 184 501 308 593 9.68e-18 87.0
MsG0380014794.01.T01 AT1G60110 34.559 136 88 1 178 312 459 594 1.84e-14 76.6
MsG0380014794.01.T01 AT3G21380 26.254 339 202 13 178 502 152 456 2.91e-17 84.7
MsG0380014794.01.T01 AT1G52040 33.824 136 89 1 178 312 317 452 4.06e-17 84.3
MsG0380014794.01.T01 AT1G52040 34.559 136 79 2 375 501 317 451 7.64e-16 80.5
MsG0380014794.01.T01 AT1G52040 42.308 78 45 0 6 83 374 451 9.79e-13 70.9
MsG0380014794.01.T01 AT2G25980 35.075 134 77 2 375 499 205 337 4.97e-17 82.8
MsG0380014794.01.T01 AT2G25980 33.333 135 89 1 178 311 205 339 1.27e-14 75.9
MsG0380014794.01.T01 AT1G61230 23.540 565 300 20 4 501 1 500 8.14e-17 83.6
MsG0380014794.01.T01 AT1G61230 24.425 348 195 9 33 312 154 501 5.24e-11 65.5
MsG0380014794.01.T01 AT2G25980 35.075 134 77 2 375 499 310 442 1.22e-16 82.8
MsG0380014794.01.T01 AT2G25980 33.333 135 89 1 178 311 310 444 2.66e-14 75.5
MsG0380014794.01.T01 AT2G25980 23.907 343 183 12 178 501 9 292 2.69e-14 75.5
MsG0380014794.01.T01 AT1G60095 26.284 331 179 10 183 501 175 452 1.76e-16 82.4
MsG0380014794.01.T01 AT1G60095 34.559 136 88 1 178 312 318 453 4.28e-14 75.1
MsG0380014794.01.T01 AT1G60095 26.284 331 179 10 183 501 319 596 2.43e-16 82.4
MsG0380014794.01.T01 AT1G60095 34.559 136 88 1 178 312 462 597 4.64e-14 75.5
MsG0380014794.01.T01 AT1G57570 26.100 341 182 11 177 501 323 609 3.51e-16 82.0
MsG0380014794.01.T01 AT1G57570 30.882 136 93 1 178 312 475 610 6.73e-13 71.6
MsG0380014794.01.T01 AT5G49870 24.397 373 208 10 146 501 280 595 7.65e-16 80.9
MsG0380014794.01.T01 AT5G49870 36.620 142 80 5 178 312 458 596 1.91e-12 70.1
MsG0380014794.01.T01 AT5G49870 24.397 373 208 10 146 501 280 595 7.65e-16 80.9
MsG0380014794.01.T01 AT5G49870 36.620 142 80 5 178 312 458 596 1.91e-12 70.1
MsG0380014794.01.T01 AT1G52060 27.353 340 173 15 178 501 30 311 8.44e-16 79.0
MsG0380014794.01.T01 AT3G16450 30.882 136 84 2 375 501 161 295 1.02e-15 78.6
MsG0380014794.01.T01 AT3G16450 34.559 136 88 1 178 312 161 296 6.81e-15 75.9
MsG0380014794.01.T01 AT3G16450 39.241 79 48 0 5 83 217 295 5.93e-12 67.0
MsG0380014794.01.T01 AT3G16450 32.576 132 76 4 381 501 15 144 3.29e-11 64.7
MsG0380014794.01.T01 AT3G16450 30.882 136 84 2 375 501 161 295 1.02e-15 78.6
MsG0380014794.01.T01 AT3G16450 34.559 136 88 1 178 312 161 296 6.81e-15 75.9
MsG0380014794.01.T01 AT3G16450 39.241 79 48 0 5 83 217 295 5.93e-12 67.0
MsG0380014794.01.T01 AT3G16450 32.576 132 76 4 381 501 15 144 3.29e-11 64.7
MsG0380014794.01.T01 AT3G16450 30.882 136 84 2 375 501 161 295 1.02e-15 78.6
MsG0380014794.01.T01 AT3G16450 34.559 136 88 1 178 312 161 296 6.81e-15 75.9
MsG0380014794.01.T01 AT3G16450 39.241 79 48 0 5 83 217 295 5.93e-12 67.0
MsG0380014794.01.T01 AT3G16450 32.576 132 76 4 381 501 15 144 3.29e-11 64.7
MsG0380014794.01.T01 AT1G52070 26.462 359 185 14 161 501 1 298 1.04e-13 72.4
MsG0380014794.01.T01 AT1G52070 26.957 345 167 16 178 501 30 310 3.02e-13 71.2
MsG0380014794.01.T01 AT1G52130 27.206 272 129 11 241 491 225 448 7.36e-13 71.2
MsG0380014794.01.T01 AT1G52130 27.206 272 129 11 241 491 225 448 7.36e-13 71.2
MsG0380014794.01.T01 AT5G38550 26.190 336 184 12 178 501 303 586 4.04e-12 69.3
MsG0380014794.01.T01 AT1G60130 24.128 344 173 11 182 501 306 585 5.70e-12 68.6
MsG0380014794.01.T01 AT1G60130 32.353 136 91 1 178 312 451 586 1.43e-11 67.4
MsG0380014794.01.T01 AT1G60130 23.795 332 189 10 182 501 316 595 5.88e-12 68.6
MsG0380014794.01.T01 AT1G60130 32.353 136 91 1 178 312 461 596 1.40e-11 67.4
MsG0380014794.01.T01 AT5G49860 25.385 260 135 5 256 501 1 215 9.03e-12 65.5
MsG0380014794.01.T01 AT5G49860 33.813 139 88 4 178 312 78 216 1.04e-11 65.1
MsG0380014794.01.T01 AT2G33070 33.088 136 80 3 375 501 9 142 1.21e-11 67.4
MsG0380014794.01.T01 AT2G33070 33.088 136 80 3 375 501 9 142 1.29e-11 67.4
MsG0380014794.01.T01 AT2G33070 33.088 136 80 3 375 501 9 142 1.29e-11 67.4

Find 169 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACACCACCAAAAGGATTTA+TGG 0.174340 3:+60161576 MsG0380014794.01.T01:CDS
CGTCGGTAGTGTTTGTTATT+TGG 0.207523 3:-60160857 None:intergenic
TATGGTAGCTTGAATCAATT+TGG 0.209026 3:+60160621 MsG0380014794.01.T01:CDS
CATACTTTCCTCTACTAGTT+TGG 0.247071 3:-60162517 None:intergenic
GGACCATTTGGAGATGAAAA+TGG 0.266275 3:+60161597 MsG0380014794.01.T01:CDS
TACCACCTTTCCCTCAGTTT+TGG 0.282891 3:-60162579 None:intergenic
TTGTGACGACTTTAATATAT+TGG 0.289427 3:+60162841 MsG0380014794.01.T01:three_prime_UTR
ACAATCTTGGCTCCAGTTAC+TGG 0.289846 3:-60160732 None:intergenic
GAGGTTCTCTCTTGCATAAC+AGG 0.314434 3:+60162437 MsG0380014794.01.T01:CDS
TTTCATTGCCTTGTCCTTCA+AGG 0.321671 3:+60163056 MsG0380014794.01.T01:three_prime_UTR
ACGTTCTAGCTAACCATTAT+CGG 0.324854 3:+60162805 MsG0380014794.01.T01:three_prime_UTR
TCAGTAATACTTGGTTCTCT+TGG 0.334966 3:-60161765 None:intergenic
AAAAGGATTTATGGACCATT+TGG 0.337416 3:+60161585 MsG0380014794.01.T01:CDS
GTGGGGATGGAGGTAGACCC+TGG 0.340766 3:+60162149 MsG0380014794.01.T01:CDS
GTTACTCTTGCAACCGATAA+TGG 0.342733 3:-60162818 None:intergenic
AAATGGTCCATAAATCCTTT+TGG 0.354647 3:-60161583 None:intergenic
CCAGGTCCATGGGGTGGGGA+TGG 0.355707 3:+60162136 MsG0380014794.01.T01:CDS
ACGGATGTTAGGAATTCATT+TGG 0.360174 3:-60160588 None:intergenic
AGGAAAATGTATGGACCATT+TGG 0.360187 3:+60160681 MsG0380014794.01.T01:CDS
ACACATATATCAGGCTACTA+TGG 0.362156 3:+60161507 MsG0380014794.01.T01:CDS
TGAATTGAGCAAATTCCTTC+AGG 0.364513 3:-60162220 None:intergenic
ATATGTGTTAATACTTCATA+TGG 0.364672 3:-60161492 None:intergenic
GGATACAAACATGGCGGAGC+TGG 0.375520 3:+60161306 MsG0380014794.01.T01:CDS
GTGGACCAGGTCCATGGGGT+GGG 0.377608 3:+60162131 MsG0380014794.01.T01:CDS
AGTATCCATCAACGGATGTT+AGG 0.386907 3:-60160599 None:intergenic
TTCTCTTGGGATGATTTCCT+TGG 0.387954 3:-60161751 None:intergenic
CAGTAATACTTGGTTCTCTT+GGG 0.388051 3:-60161764 None:intergenic
ACATGGGGCCTTCTATTATA+AGG 0.388075 3:+60161541 MsG0380014794.01.T01:CDS
CGTATAACTAGGGTAGAATA+AGG 0.393237 3:-60162785 None:intergenic
GTTGGATTCCATGGCCGATA+TGG 0.394787 3:+60160753 MsG0380014794.01.T01:CDS
AATACTGTTAGATTCTTTGA+AGG 0.398361 3:-60160991 None:intergenic
GTCGAAGGTATGGCCACTTA+TGG 0.399041 3:+60161150 MsG0380014794.01.T01:CDS
GGTCCATGGGGTGGGGATGG+AGG 0.403321 3:+60162139 MsG0380014794.01.T01:CDS
ACATCCGTTGATGGATACTA+TGG 0.405367 3:+60160603 MsG0380014794.01.T01:CDS
GGACAGATAGTTGGCATTCA+TGG 0.406326 3:+60161648 MsG0380014794.01.T01:CDS
GTAAGTGACCTTATAATAGA+AGG 0.407176 3:-60161549 None:intergenic
AGCATGTACTTGGATGCAAT+TGG 0.407930 3:+60162620 MsG0380014794.01.T01:CDS
TCAGATAGTTCCTATGTTGA+AGG 0.409833 3:+60161116 MsG0380014794.01.T01:intron
GCATGTACTTGGATGCAATT+GGG 0.411393 3:+60162621 MsG0380014794.01.T01:CDS
TTCCATGTGGACCAGGTCCA+TGG 0.416709 3:+60162125 MsG0380014794.01.T01:CDS
ATTGATGGTGCCTTCAACAT+AGG 0.418147 3:-60161126 None:intergenic
TATGGCCACTTATGGTCCTT+GGG 0.419028 3:+60161158 MsG0380014794.01.T01:CDS
GTAACTGGAGCCAAGATTGT+TGG 0.420181 3:+60160735 MsG0380014794.01.T01:CDS
TGATTTAGAATGTCCAAGTT+TGG 0.424597 3:-60161811 None:intergenic
CAAACTAGTAGAGGAAAGTA+TGG 0.425660 3:+60162518 MsG0380014794.01.T01:CDS
GCTCAAAGGCCAGCCAAACT+TGG 0.427169 3:+60161798 MsG0380014794.01.T01:CDS
TATGGTCCTTGGGGAGGTAA+TGG 0.432510 3:+60161168 MsG0380014794.01.T01:CDS
GAGAGTAACAGGAAAATGTA+TGG 0.432716 3:+60160672 MsG0380014794.01.T01:CDS
CGGATGTTAGGAATTCATTT+GGG 0.434734 3:-60160587 None:intergenic
GAAGTATTAACACATATATC+AGG 0.435495 3:+60161498 MsG0380014794.01.T01:CDS
TGTGGACCAGGTCCATGGGG+TGG 0.438974 3:+60162130 MsG0380014794.01.T01:CDS
AGAGGAAAGTATGGTCCATT+TGG 0.444549 3:+60162527 MsG0380014794.01.T01:CDS
AGAGCATTGTATGATCTTGA+TGG 0.446825 3:+60161270 MsG0380014794.01.T01:CDS
GTTGGCATTCATGGTAGAAA+AGG 0.451807 3:+60161657 MsG0380014794.01.T01:CDS
CATCTATGTGCCAACCATAT+CGG 0.452341 3:-60160767 None:intergenic
ATCTTGATGGCGAAGCTGTA+TGG 0.453163 3:+60161283 MsG0380014794.01.T01:CDS
GTATGGCCACTTATGGTCCT+TGG 0.454661 3:+60161157 MsG0380014794.01.T01:CDS
GCCAAGATTGTTGGATTCCA+TGG 0.455907 3:+60160744 MsG0380014794.01.T01:CDS
CTCAGTGACCTGATGAAGAT+TGG 0.456361 3:-60160645 None:intergenic
GAATTCCTAACATCCGTTGA+TGG 0.457530 3:+60160594 MsG0380014794.01.T01:CDS
TCCATGTGGACCAGGTCCAT+GGG 0.458060 3:+60162126 MsG0380014794.01.T01:CDS
GGTTTATTTCTAGATGCTCT+TGG 0.461253 3:+60161678 MsG0380014794.01.T01:CDS
GTCCATATGCAACACTGGTT+GGG 0.462228 3:+60162644 MsG0380014794.01.T01:CDS
TTAGAATGTCCAAGTTTGGC+TGG 0.462480 3:-60161807 None:intergenic
TTCCCTACTTCATCACCAAA+TGG 0.462654 3:-60162542 None:intergenic
GCCATGGAATCCAACAATCT+TGG 0.463231 3:-60160745 None:intergenic
GCCATACCTTCGACTATTGA+TGG 0.464454 3:-60161141 None:intergenic
GTGTTTGTTATTTGGTTCTG+TGG 0.465044 3:-60160849 None:intergenic
ATTTCCTTGGACGGAGATGC+TGG 0.465894 3:-60161738 None:intergenic
TTCCCAACCAGTGTTGCATA+TGG 0.466395 3:-60162646 None:intergenic
GGACCTGGTCCACATGGAAC+TGG 0.472627 3:-60162121 None:intergenic
TGGACCAGGTCCATGGGGTG+GGG 0.473280 3:+60162132 MsG0380014794.01.T01:CDS
GGAGGTAGACCCTGGGATGA+TGG 0.473842 3:+60162157 MsG0380014794.01.T01:CDS
AATTTGGACCAATCTTCATC+AGG 0.475999 3:+60160637 MsG0380014794.01.T01:CDS
GGACAGGGCTTGAACCTTGA+AGG 0.476053 3:-60163070 None:intergenic
TCTTGCATAACAGGCTATCA+TGG 0.476827 3:+60162446 MsG0380014794.01.T01:CDS
ATTTGCCTGATTCCAGTGTA+AGG 0.477711 3:-60161213 None:intergenic
CTTGGGATGATTTCCTTGGA+CGG 0.478576 3:-60161747 None:intergenic
ATGGACCTTACACTGGAATC+AGG 0.479297 3:+60161208 MsG0380014794.01.T01:CDS
CTATGGATCTCTGATGTACA+TGG 0.485983 3:+60161524 MsG0380014794.01.T01:CDS
TTCACAACAAAGCTGAAAGA+AGG 0.486521 3:+60161627 MsG0380014794.01.T01:CDS
ATTGATTTGTCGCGTAACAT+TGG 0.488126 3:+60161234 MsG0380014794.01.T01:CDS
TGGGAGGAGTAGCATGTACT+TGG 0.488790 3:+60162610 MsG0380014794.01.T01:CDS
GTCCATTTGGTGATGAAGTA+GGG 0.491140 3:+60162540 MsG0380014794.01.T01:CDS
TGGAGGATTCAAACATGAAA+AGG 0.492724 3:+60161326 MsG0380014794.01.T01:CDS
GTTGCTGATAGGATCTCAAA+TGG 0.493748 3:-60160800 None:intergenic
TATGCAAGAGAGAACCTCAT+TGG 0.496543 3:-60162432 None:intergenic
CCATCCCCACCCCATGGACC+TGG 0.499462 3:-60162136 None:intergenic
GGTCCATTTGGTGATGAAGT+AGG 0.505637 3:+60162539 MsG0380014794.01.T01:CDS
GGAAGGAAAAGTGATAGTTC+CGG 0.506332 3:+60161713 MsG0380014794.01.T01:CDS
GGTCCATATGCAACACTGGT+TGG 0.506466 3:+60162643 MsG0380014794.01.T01:CDS
CCCCATGGACCTGGTCCACA+TGG 0.509187 3:-60162127 None:intergenic
GTTCCTTGTTCAACTCCAAA+TGG 0.517499 3:-60160696 None:intergenic
CTGAAAGAAGGACAGATAGT+TGG 0.521617 3:+60161639 MsG0380014794.01.T01:CDS
TTCACTTCAACCAAAACTGA+GGG 0.524529 3:+60162569 MsG0380014794.01.T01:CDS
GAACCAGTTCCATGTGGACC+AGG 0.525502 3:+60162118 MsG0380014794.01.T01:CDS
CTACCTCCATCCCCACCCCA+TGG 0.525578 3:-60162142 None:intergenic
AGAAAGAGGTAATTGAGGAC+AGG 0.526007 3:-60163086 None:intergenic
ATCGAAATAAGCAATCTGTA+TGG 0.527539 3:+60162254 MsG0380014794.01.T01:CDS
TTACATTCCACACCACCAAA+AGG 0.530137 3:+60161568 MsG0380014794.01.T01:CDS
TGGGGATGGAGGTAGACCCT+GGG 0.532044 3:+60162150 MsG0380014794.01.T01:CDS
CAGTATTGAACCAAAAGAAA+AGG 0.532197 3:+60161007 MsG0380014794.01.T01:CDS
TGGGAAGTCAGAAAACTTCA+AGG 0.533811 3:+60162663 MsG0380014794.01.T01:CDS
GCTTGTTCATCGGTAGCAAT+CGG 0.534820 3:-60162470 None:intergenic
GGTGGATATGTATTTGATGA+TGG 0.536974 3:+60161189 MsG0380014794.01.T01:CDS
ACCTCCCCAAGGACCATAAG+TGG 0.537014 3:-60161163 None:intergenic
TCTTGATGGCGAAGCTGTAT+GGG 0.537905 3:+60161284 MsG0380014794.01.T01:CDS
ACCATCAATAGTCGAAGGTA+TGG 0.538876 3:+60161140 MsG0380014794.01.T01:CDS
GGAAAAGACTCCATCATCCC+AGG 0.539610 3:-60162167 None:intergenic
GGTCCTTGGGGAGGTAATGG+TGG 0.541369 3:+60161171 MsG0380014794.01.T01:CDS
GTTAGCTAGAACGTATAACT+AGG 0.543943 3:-60162796 None:intergenic
CAACAACAATATCAAAGCCT+TGG 0.552789 3:-60160914 None:intergenic
GATTCCATGGCCGATATGGT+TGG 0.553445 3:+60160757 MsG0380014794.01.T01:CDS
TTTGATGATGGACCTTACAC+TGG 0.557312 3:+60161201 MsG0380014794.01.T01:CDS
TGTGCCAACCATATCGGCCA+TGG 0.558796 3:-60160761 None:intergenic
ATATACAATAGGACTTATGA+TGG 0.563454 3:+60162968 MsG0380014794.01.T01:three_prime_UTR
TAAATCAGCACCACTTGAAG+AGG 0.563577 3:+60161827 MsG0380014794.01.T01:CDS
GTTGCTGTAAAACAGAAAGA+TGG 0.569372 3:+60160933 MsG0380014794.01.T01:CDS
TGCTCTTGGTGTACATGTGA+TGG 0.569777 3:+60161692 MsG0380014794.01.T01:CDS
TTGGACGGAGATGCTGGCAC+CGG 0.570185 3:-60161732 None:intergenic
CGCGTAACATTGGAATTGTG+TGG 0.570652 3:+60161244 MsG0380014794.01.T01:CDS
CATATTTCATAGGTTTCTCG+TGG 0.570779 3:+60162085 MsG0380014794.01.T01:intron
TTCAACCAAAACTGAGGGAA+AGG 0.571093 3:+60162574 MsG0380014794.01.T01:CDS
GTTGGTTATTCTGTAATACA+AGG 0.572317 3:+60160882 MsG0380014794.01.T01:CDS
TATTTGTCAAAATCACCTGA+AGG 0.582436 3:+60162205 MsG0380014794.01.T01:CDS
CTGACTTTCCAAACTAGTAG+AGG 0.582465 3:+60162509 MsG0380014794.01.T01:CDS
GAACAAGAAAGAGGTAATTG+AGG 0.586363 3:-60163091 None:intergenic
TTGGGGTCCATATGCAACAC+TGG 0.586493 3:+60162639 MsG0380014794.01.T01:CDS
GGTGCCAGCATCTCCGTCCA+AGG 0.591521 3:+60161734 MsG0380014794.01.T01:CDS
TACAAACATGGCGGAGCTGG+AGG 0.591919 3:+60161309 MsG0380014794.01.T01:CDS
GGACCATTTGGAGTTGAACA+AGG 0.592676 3:+60160693 MsG0380014794.01.T01:CDS
GCCACTTATGGTCCTTGGGG+AGG 0.596095 3:+60161162 MsG0380014794.01.T01:CDS
AATCACTATAGCTTGTTCAT+CGG 0.598912 3:-60162480 None:intergenic
AAAGAAGTGGAACAAGAAAG+AGG 0.599492 3:-60163100 None:intergenic
CATGTACTTGGATGCAATTG+GGG 0.599538 3:+60162622 MsG0380014794.01.T01:CDS
TTTCACTTCAACCAAAACTG+AGG 0.604250 3:+60162568 MsG0380014794.01.T01:CDS
ACAAACACTACCGACGCTGT+TGG 0.607736 3:+60160864 MsG0380014794.01.T01:CDS
CTTGGCTCCAGTTACTGGCA+AGG 0.608139 3:-60160727 None:intergenic
CGATTCAAAATAGCTTGAAG+AGG 0.612739 3:-60162694 None:intergenic
CAAATAAATCTGCTTAACAT+CGG 0.613440 3:-60162188 None:intergenic
TATGGATCTCTGATGTACAT+GGG 0.613855 3:+60161525 MsG0380014794.01.T01:CDS
TATGTGTTAATACTTCATAT+GGG 0.614602 3:-60161491 None:intergenic
ATGGCCACTTATGGTCCTTG+GGG 0.614717 3:+60161159 MsG0380014794.01.T01:CDS
AACCAAAACTGAGGGAAAGG+TGG 0.617317 3:+60162577 MsG0380014794.01.T01:CDS
AACATGCATCTTGAAACCAA+TGG 0.617634 3:-60163035 None:intergenic
ATATGAAATACCTCTTCAAG+TGG 0.618805 3:-60161837 None:intergenic
GAAAGAGGTAATTGAGGACA+GGG 0.621130 3:-60163085 None:intergenic
CCATGTGGACCAGGTCCATG+GGG 0.629354 3:+60162127 MsG0380014794.01.T01:CDS
TTAGCTAGAACGTATAACTA+GGG 0.629558 3:-60162795 None:intergenic
AAAACTGAGGGAAAGGTGGT+AGG 0.631322 3:+60162581 MsG0380014794.01.T01:CDS
GGTTGGCACATAGATGCCAT+CGG 0.633247 3:+60160774 MsG0380014794.01.T01:CDS
GGATCTCAAATGGACTCCGA+TGG 0.633563 3:-60160790 None:intergenic
ATGGATCTCTGATGTACATG+GGG 0.638082 3:+60161526 MsG0380014794.01.T01:CDS
GATTCAAAATAGCTTGAAGA+GGG 0.645721 3:-60162693 None:intergenic
ATACAAGGAAGTGTTAGCCA+AGG 0.648611 3:+60160897 MsG0380014794.01.T01:CDS
GAAAAGACTCCATCATCCCA+GGG 0.651736 3:-60162166 None:intergenic
AAGGCACCATCAATAGTCGA+AGG 0.653571 3:+60161135 MsG0380014794.01.T01:CDS
GGCTTGAACCTTGAAGGACA+AGG 0.657747 3:-60163064 None:intergenic
TAAAATTGGACTATCCAATG+AGG 0.659735 3:+60162418 MsG0380014794.01.T01:CDS
GCTACCATAGTATCCATCAA+CGG 0.667582 3:-60160607 None:intergenic
TCTGTATGGTCAGTGAAGCA+TGG 0.668544 3:+60162268 MsG0380014794.01.T01:CDS
GCTGTATGGGGATACAAACA+TGG 0.671470 3:+60161297 MsG0380014794.01.T01:CDS
TACAGAATAACCAACAGCGT+CGG 0.675180 3:-60160874 None:intergenic
CTTGATGGCGAAGCTGTATG+GGG 0.676669 3:+60161285 MsG0380014794.01.T01:CDS
CTTGGTGTACATGTGATGGA+AGG 0.679934 3:+60161696 MsG0380014794.01.T01:CDS
TATCCACCATTACCTCCCCA+AGG 0.684228 3:-60161174 None:intergenic
ACTCAAGAACCAGTTCCATG+TGG 0.708591 3:+60162112 MsG0380014794.01.T01:CDS
GTATGGGGATACAAACATGG+CGG 0.789126 3:+60161300 MsG0380014794.01.T01:CDS
GTATGGTCAGTGAAGCATGG+TGG 0.827944 3:+60162271 MsG0380014794.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTCAGTAATACT+TGG - Chr3:60161777-60161796 None:intergenic 15.0%
!! AATGATGCGTAAAAATAATT+AGG - Chr3:60161451-60161470 None:intergenic 20.0%
!! ACGAAAAATAATCAATCTAA+CGG + Chr3:60162007-60162026 MsG0380014794.01.T01:intron 20.0%
!! ATATGTGTTAATACTTCATA+TGG - Chr3:60161495-60161514 None:intergenic 20.0%
!! ATATTGTGATGATTATAACA+TGG - Chr3:60162038-60162057 None:intergenic 20.0%
!! ATGATGCGTAAAAATAATTA+GGG - Chr3:60161450-60161469 None:intergenic 20.0%
!! TATGTGTTAATACTTCATAT+GGG - Chr3:60161494-60161513 None:intergenic 20.0%
!! TTAATATATTGGCCAAAAAT+AGG + Chr3:60162852-60162871 MsG0380014794.01.T01:three_prime_UTR 20.0%
!!! TTGTGTTTTATAGGTAAAAT+TGG + Chr3:60162404-60162423 MsG0380014794.01.T01:intron 20.0%
!!! TTTTTTCTTACCTTTTCTTT+TGG - Chr3:60161020-60161039 None:intergenic 20.0%
! AATACTGTTAGATTCTTTGA+AGG - Chr3:60160994-60161013 None:intergenic 25.0%
! AGAGAAAAATGAATTTCCAT+TGG + Chr3:60163019-60163038 MsG0380014794.01.T01:three_prime_UTR 25.0%
! ATATACAATAGGACTTATGA+TGG + Chr3:60162968-60162987 MsG0380014794.01.T01:three_prime_UTR 25.0%
! CAAATAAATCTGCTTAACAT+CGG - Chr3:60162191-60162210 None:intergenic 25.0%
! CTGAAATAAAAAATGCTCAA+AGG + Chr3:60161784-60161803 MsG0380014794.01.T01:CDS 25.0%
! TTGTGACGACTTTAATATAT+TGG + Chr3:60162841-60162860 MsG0380014794.01.T01:three_prime_UTR 25.0%
!! GAAGTATTAACACATATATC+AGG + Chr3:60161498-60161517 MsG0380014794.01.T01:CDS 25.0%
!! GTGCTTATATTGTGTTTTAT+AGG + Chr3:60162395-60162414 MsG0380014794.01.T01:intron 25.0%
!! TAATTTTCCGCATATTTCAT+AGG + Chr3:60162075-60162094 MsG0380014794.01.T01:intron 25.0%
!! TGGTTTTCGATATATACAAT+AGG + Chr3:60162957-60162976 MsG0380014794.01.T01:three_prime_UTR 25.0%
!!! AAGGTGAGAATCTTATTTTT+TGG - Chr3:60160975-60160994 None:intergenic 25.0%
!!! GAACATGAAAAAGTATTTCT+TGG + Chr3:60162937-60162956 MsG0380014794.01.T01:three_prime_UTR 25.0%
!!! TATTTCATATACCGACTTTA+TGG + Chr3:60161850-60161869 MsG0380014794.01.T01:intron 25.0%
AAAAATAATTAGGGCTCGTT+TGG - Chr3:60161441-60161460 None:intergenic 30.0%
AAAAGGATTTATGGACCATT+TGG + Chr3:60161585-60161604 MsG0380014794.01.T01:CDS 30.0%
ATATGAAATACCTCTTCAAG+TGG - Chr3:60161840-60161859 None:intergenic 30.0%
ATCGAAATAAGCAATCTGTA+TGG + Chr3:60162254-60162273 MsG0380014794.01.T01:CDS 30.0%
CAAGATTGTATTATGTAGAC+GGG - Chr3:60161385-60161404 None:intergenic 30.0%
CCAAAAATAGGTTATGTACA+TGG + Chr3:60162864-60162883 MsG0380014794.01.T01:three_prime_UTR 30.0%
CCAAGATTGTATTATGTAGA+CGG - Chr3:60161386-60161405 None:intergenic 30.0%
GATTCAAAATAGCTTGAAGA+GGG - Chr3:60162696-60162715 None:intergenic 30.0%
GTAAGTGACCTTATAATAGA+AGG - Chr3:60161552-60161571 None:intergenic 30.0%
GTTGGTTATTCTGTAATACA+AGG + Chr3:60160882-60160901 MsG0380014794.01.T01:CDS 30.0%
TAAAATTGGACTATCCAATG+AGG + Chr3:60162418-60162437 MsG0380014794.01.T01:CDS 30.0%
TATGGTAGCTTGAATCAATT+TGG + Chr3:60160621-60160640 MsG0380014794.01.T01:CDS 30.0%
TATTTGTCAAAATCACCTGA+AGG + Chr3:60162205-60162224 MsG0380014794.01.T01:CDS 30.0%
TGCAAACACGAAAATATGAA+AGG - Chr3:60161066-60161085 None:intergenic 30.0%
TTAGCTAGAACGTATAACTA+GGG - Chr3:60162798-60162817 None:intergenic 30.0%
! AAATGGTCCATAAATCCTTT+TGG - Chr3:60161586-60161605 None:intergenic 30.0%
! CAGTATTGAACCAAAAGAAA+AGG + Chr3:60161007-60161026 MsG0380014794.01.T01:CDS 30.0%
! CCATGTACATAACCTATTTT+TGG - Chr3:60162867-60162886 None:intergenic 30.0%
! TGATTTAGAATGTCCAAGTT+TGG - Chr3:60161814-60161833 None:intergenic 30.0%
!! AATCACTATAGCTTGTTCAT+CGG - Chr3:60162483-60162502 None:intergenic 30.0%
AACATGCATCTTGAAACCAA+TGG - Chr3:60163038-60163057 None:intergenic 35.0%
AATTTGGACCAATCTTCATC+AGG + Chr3:60160637-60160656 MsG0380014794.01.T01:CDS 35.0%
ACACATATATCAGGCTACTA+TGG + Chr3:60161507-60161526 MsG0380014794.01.T01:CDS 35.0%
ACGGATGTTAGGAATTCATT+TGG - Chr3:60160591-60160610 None:intergenic 35.0%
AGGAAAATGTATGGACCATT+TGG + Chr3:60160681-60160700 MsG0380014794.01.T01:CDS 35.0%
CAAACTAGTAGAGGAAAGTA+TGG + Chr3:60162518-60162537 MsG0380014794.01.T01:CDS 35.0%
CAACAACAATATCAAAGCCT+TGG - Chr3:60160917-60160936 None:intergenic 35.0%
CATACTTTCCTCTACTAGTT+TGG - Chr3:60162520-60162539 None:intergenic 35.0%
CATATTTCATAGGTTTCTCG+TGG + Chr3:60162085-60162104 MsG0380014794.01.T01:intron 35.0%
CCGTCTACATAATACAATCT+TGG + Chr3:60161383-60161402 MsG0380014794.01.T01:intron 35.0%
CGACTTTATGGTATTACACA+CGG + Chr3:60161862-60161881 MsG0380014794.01.T01:intron 35.0%
CGAGAAACCTATGAAATATG+CGG - Chr3:60162085-60162104 None:intergenic 35.0%
CGATTCAAAATAGCTTGAAG+AGG - Chr3:60162697-60162716 None:intergenic 35.0%
CGGATGTTAGGAATTCATTT+GGG - Chr3:60160590-60160609 None:intergenic 35.0%
CGTATAACTAGGGTAGAATA+AGG - Chr3:60162788-60162807 None:intergenic 35.0%
CGTGTGTAATACCATAAAGT+CGG - Chr3:60161864-60161883 None:intergenic 35.0%
GAACAAGAAAGAGGTAATTG+AGG - Chr3:60163094-60163113 None:intergenic 35.0%
GAGAGTAACAGGAAAATGTA+TGG + Chr3:60160672-60160691 MsG0380014794.01.T01:CDS 35.0%
GGTGGATATGTATTTGATGA+TGG + Chr3:60161189-60161208 MsG0380014794.01.T01:CDS 35.0%
GTTAGCTAGAACGTATAACT+AGG - Chr3:60162799-60162818 None:intergenic 35.0%
GTTGCTGTAAAACAGAAAGA+TGG + Chr3:60160933-60160952 MsG0380014794.01.T01:CDS 35.0%
TATGGATCTCTGATGTACAT+GGG + Chr3:60161525-60161544 MsG0380014794.01.T01:CDS 35.0%
TCAGATAGTTCCTATGTTGA+AGG + Chr3:60161116-60161135 MsG0380014794.01.T01:intron 35.0%
TGAATTGAGCAAATTCCTTC+AGG - Chr3:60162223-60162242 None:intergenic 35.0%
TGGAGGATTCAAACATGAAA+AGG + Chr3:60161326-60161345 MsG0380014794.01.T01:CDS 35.0%
TTCACAACAAAGCTGAAAGA+AGG + Chr3:60161627-60161646 MsG0380014794.01.T01:CDS 35.0%
TTCACTTCAACCAAAACTGA+GGG + Chr3:60162569-60162588 MsG0380014794.01.T01:CDS 35.0%
TTTCACTTCAACCAAAACTG+AGG + Chr3:60162568-60162587 MsG0380014794.01.T01:CDS 35.0%
! ACGTTCTAGCTAACCATTAT+CGG + Chr3:60162805-60162824 MsG0380014794.01.T01:three_prime_UTR 35.0%
! CAGTAATACTTGGTTCTCTT+GGG - Chr3:60161767-60161786 None:intergenic 35.0%
! GACAAAGTTTTCGATGGTTT+TGG - Chr3:60160825-60160844 None:intergenic 35.0%
! GGATAAGACAAAGTTTTCGA+TGG - Chr3:60160831-60160850 None:intergenic 35.0%
! GTTCCATTTTCATCTCCAAA+TGG - Chr3:60161603-60161622 None:intergenic 35.0%
! TCAGTAATACTTGGTTCTCT+TGG - Chr3:60161768-60161787 None:intergenic 35.0%
!! AGAGCATTGTATGATCTTGA+TGG + Chr3:60161270-60161289 MsG0380014794.01.T01:CDS 35.0%
!! ATTGATTTGTCGCGTAACAT+TGG + Chr3:60161234-60161253 MsG0380014794.01.T01:CDS 35.0%
!! GGTTTATTTCTAGATGCTCT+TGG + Chr3:60161678-60161697 MsG0380014794.01.T01:CDS 35.0%
!! GTGTTTGTTATTTGGTTCTG+TGG - Chr3:60160852-60160871 None:intergenic 35.0%
ACATGGGGCCTTCTATTATA+AGG + Chr3:60161541-60161560 MsG0380014794.01.T01:CDS 40.0%
ACCATCAATAGTCGAAGGTA+TGG + Chr3:60161140-60161159 MsG0380014794.01.T01:CDS 40.0%
AGAAAGAGGTAATTGAGGAC+AGG - Chr3:60163089-60163108 None:intergenic 40.0%
AGCATGTACTTGGATGCAAT+TGG + Chr3:60162620-60162639 MsG0380014794.01.T01:CDS 40.0%
AGTATCCATCAACGGATGTT+AGG - Chr3:60160602-60160621 None:intergenic 40.0%
ATGGATCTCTGATGTACATG+GGG + Chr3:60161526-60161545 MsG0380014794.01.T01:CDS 40.0%
ATTTGCCTGATTCCAGTGTA+AGG - Chr3:60161216-60161235 None:intergenic 40.0%
CACACCACCAAAAGGATTTA+TGG + Chr3:60161576-60161595 MsG0380014794.01.T01:CDS 40.0%
CATCTATGTGCCAACCATAT+CGG - Chr3:60160770-60160789 None:intergenic 40.0%
CATGTACTTGGATGCAATTG+GGG + Chr3:60162622-60162641 MsG0380014794.01.T01:CDS 40.0%
CTATGGATCTCTGATGTACA+TGG + Chr3:60161524-60161543 MsG0380014794.01.T01:CDS 40.0%
CTGAAAGAAGGACAGATAGT+TGG + Chr3:60161639-60161658 MsG0380014794.01.T01:CDS 40.0%
CTGACTTTCCAAACTAGTAG+AGG + Chr3:60162509-60162528 MsG0380014794.01.T01:CDS 40.0%
GAAAGAGGTAATTGAGGACA+GGG - Chr3:60163088-60163107 None:intergenic 40.0%
GAATTCCTAACATCCGTTGA+TGG + Chr3:60160594-60160613 MsG0380014794.01.T01:CDS 40.0%
GCATGTACTTGGATGCAATT+GGG + Chr3:60162621-60162640 MsG0380014794.01.T01:CDS 40.0%
GCTACCATAGTATCCATCAA+CGG - Chr3:60160610-60160629 None:intergenic 40.0%
GGAAGGAAAAGTGATAGTTC+CGG + Chr3:60161713-60161732 MsG0380014794.01.T01:CDS 40.0%
GGACCATTTGGAGATGAAAA+TGG + Chr3:60161597-60161616 MsG0380014794.01.T01:CDS 40.0%
GTAGACGGGAATTACAACTA+GGG - Chr3:60161371-60161390 None:intergenic 40.0%
GTTACTCTTGCAACCGATAA+TGG - Chr3:60162821-60162840 None:intergenic 40.0%
GTTCCTTGTTCAACTCCAAA+TGG - Chr3:60160699-60160718 None:intergenic 40.0%
GTTGCTGATAGGATCTCAAA+TGG - Chr3:60160803-60160822 None:intergenic 40.0%
GTTGGCATTCATGGTAGAAA+AGG + Chr3:60161657-60161676 MsG0380014794.01.T01:CDS 40.0%
TAAATCAGCACCACTTGAAG+AGG + Chr3:60161827-60161846 MsG0380014794.01.T01:CDS 40.0%
TACAGAATAACCAACAGCGT+CGG - Chr3:60160877-60160896 None:intergenic 40.0%
TATGCAAGAGAGAACCTCAT+TGG - Chr3:60162435-60162454 None:intergenic 40.0%
TCATATTCATACCCTATGCG+TGG - Chr3:60162311-60162330 None:intergenic 40.0%
TCTTGCATAACAGGCTATCA+TGG + Chr3:60162446-60162465 MsG0380014794.01.T01:CDS 40.0%
TGGGAAGTCAGAAAACTTCA+AGG + Chr3:60162663-60162682 MsG0380014794.01.T01:CDS 40.0%
TGTAGACGGGAATTACAACT+AGG - Chr3:60161372-60161391 None:intergenic 40.0%
TTACATTCCACACCACCAAA+AGG + Chr3:60161568-60161587 MsG0380014794.01.T01:CDS 40.0%
TTAGAATGTCCAAGTTTGGC+TGG - Chr3:60161810-60161829 None:intergenic 40.0%
TTAGGGCTCGTTTGGATAAA+CGG - Chr3:60161433-60161452 None:intergenic 40.0%
TTCAACCAAAACTGAGGGAA+AGG + Chr3:60162574-60162593 MsG0380014794.01.T01:CDS 40.0%
TTCCCTACTTCATCACCAAA+TGG - Chr3:60162545-60162564 None:intergenic 40.0%
TTCTCTTGGGATGATTTCCT+TGG - Chr3:60161754-60161773 None:intergenic 40.0%
TTTCATTGCCTTGTCCTTCA+AGG + Chr3:60163056-60163075 MsG0380014794.01.T01:three_prime_UTR 40.0%
! ACATCCGTTGATGGATACTA+TGG + Chr3:60160603-60160622 MsG0380014794.01.T01:CDS 40.0%
! AGAGGAAAGTATGGTCCATT+TGG + Chr3:60162527-60162546 MsG0380014794.01.T01:CDS 40.0%
! GAAAGGTGGTAGGTTTTCAT+GGG + Chr3:60162591-60162610 MsG0380014794.01.T01:CDS 40.0%
! TACTTTTCCTTGCCAGTAAC+TGG + Chr3:60160720-60160739 MsG0380014794.01.T01:CDS 40.0%
! TGGTCCATAAATCCTTTTGG+TGG - Chr3:60161583-60161602 None:intergenic 40.0%
!! ATACAAGGAAGTGTTAGCCA+AGG + Chr3:60160897-60160916 MsG0380014794.01.T01:CDS 40.0%
!! ATTGATGGTGCCTTCAACAT+AGG - Chr3:60161129-60161148 None:intergenic 40.0%
!! CGTCGGTAGTGTTTGTTATT+TGG - Chr3:60160860-60160879 None:intergenic 40.0%
!! GTCCATTTGGTGATGAAGTA+GGG + Chr3:60162540-60162559 MsG0380014794.01.T01:CDS 40.0%
!! TTTGATGATGGACCTTACAC+TGG + Chr3:60161201-60161220 MsG0380014794.01.T01:CDS 40.0%
!!! CACTGAGTTTTGAGAGTAAC+AGG + Chr3:60160661-60160680 MsG0380014794.01.T01:CDS 40.0%
!!! CATAAATCCTTTTGGTGGTG+TGG - Chr3:60161578-60161597 None:intergenic 40.0%
AAAACTGAGGGAAAGGTGGT+AGG + Chr3:60162581-60162600 MsG0380014794.01.T01:CDS 45.0%
AACCAAAACTGAGGGAAAGG+TGG + Chr3:60162577-60162596 MsG0380014794.01.T01:CDS 45.0%
ACAATCTTGGCTCCAGTTAC+TGG - Chr3:60160735-60160754 None:intergenic 45.0%
ACTCAAGAACCAGTTCCATG+TGG + Chr3:60162112-60162131 MsG0380014794.01.T01:CDS 45.0%
ATGGACCTTACACTGGAATC+AGG + Chr3:60161208-60161227 MsG0380014794.01.T01:CDS 45.0%
CGCGTAACATTGGAATTGTG+TGG + Chr3:60161244-60161263 MsG0380014794.01.T01:CDS 45.0%
CTCAGTGACCTGATGAAGAT+TGG - Chr3:60160648-60160667 None:intergenic 45.0%
CTTGGGATGATTTCCTTGGA+CGG - Chr3:60161750-60161769 None:intergenic 45.0%
GAAAAGACTCCATCATCCCA+GGG - Chr3:60162169-60162188 None:intergenic 45.0%
GAGGTTCTCTCTTGCATAAC+AGG + Chr3:60162437-60162456 MsG0380014794.01.T01:CDS 45.0%
GCCAAGATTGTTGGATTCCA+TGG + Chr3:60160744-60160763 MsG0380014794.01.T01:CDS 45.0%
GCCATACCTTCGACTATTGA+TGG - Chr3:60161144-60161163 None:intergenic 45.0%
GCCATGGAATCCAACAATCT+TGG - Chr3:60160748-60160767 None:intergenic 45.0%
GCTGTATGGGGATACAAACA+TGG + Chr3:60161297-60161316 MsG0380014794.01.T01:CDS 45.0%
GCTTGTTCATCGGTAGCAAT+CGG - Chr3:60162473-60162492 None:intergenic 45.0%
GGACAGATAGTTGGCATTCA+TGG + Chr3:60161648-60161667 MsG0380014794.01.T01:CDS 45.0%
GTAACTGGAGCCAAGATTGT+TGG + Chr3:60160735-60160754 MsG0380014794.01.T01:CDS 45.0%
GTATGGGGATACAAACATGG+CGG + Chr3:60161300-60161319 MsG0380014794.01.T01:CDS 45.0%
TATGGCCACTTATGGTCCTT+GGG + Chr3:60161158-60161177 MsG0380014794.01.T01:CDS 45.0%
TCAGTGAAGCATGGTGGTAA+TGG + Chr3:60162277-60162296 MsG0380014794.01.T01:intron 45.0%
TCTGTATGGTCAGTGAAGCA+TGG + Chr3:60162268-60162287 MsG0380014794.01.T01:CDS 45.0%
TTCCCAACCAGTGTTGCATA+TGG - Chr3:60162649-60162668 None:intergenic 45.0%
! AAGGCACCATCAATAGTCGA+AGG + Chr3:60161135-60161154 MsG0380014794.01.T01:CDS 45.0%
! CTTGGTGTACATGTGATGGA+AGG + Chr3:60161696-60161715 MsG0380014794.01.T01:CDS 45.0%
! GGAAAGGTGGTAGGTTTTCA+TGG + Chr3:60162590-60162609 MsG0380014794.01.T01:CDS 45.0%
! GGACCATTTGGAGTTGAACA+AGG + Chr3:60160693-60160712 MsG0380014794.01.T01:CDS 45.0%
! GTCCATATGCAACACTGGTT+GGG + Chr3:60162644-60162663 MsG0380014794.01.T01:CDS 45.0%
! TACCACCTTTCCCTCAGTTT+TGG - Chr3:60162582-60162601 None:intergenic 45.0%
! TGCTCTTGGTGTACATGTGA+TGG + Chr3:60161692-60161711 MsG0380014794.01.T01:CDS 45.0%
!! ATCTTGATGGCGAAGCTGTA+TGG + Chr3:60161283-60161302 MsG0380014794.01.T01:CDS 45.0%
!! GGTCCATTTGGTGATGAAGT+AGG + Chr3:60162539-60162558 MsG0380014794.01.T01:CDS 45.0%
!! TCTTGATGGCGAAGCTGTAT+GGG + Chr3:60161284-60161303 MsG0380014794.01.T01:CDS 45.0%
!!! CGATGGTTTTGGTTGCTGAT+AGG - Chr3:60160814-60160833 None:intergenic 45.0%
!! TATCATATATATATATAATA+AGG + Chr3:60161921-60161940 MsG0380014794.01.T01:intron 5.0%
ACAAACACTACCGACGCTGT+TGG + Chr3:60160864-60160883 MsG0380014794.01.T01:CDS 50.0%
ATGGCCACTTATGGTCCTTG+GGG + Chr3:60161159-60161178 MsG0380014794.01.T01:CDS 50.0%
ATTTCCTTGGACGGAGATGC+TGG - Chr3:60161741-60161760 None:intergenic 50.0%
GATTCCATGGCCGATATGGT+TGG + Chr3:60160757-60160776 MsG0380014794.01.T01:CDS 50.0%
GGAAAAGACTCCATCATCCC+AGG - Chr3:60162170-60162189 None:intergenic 50.0%
GGCTTGAACCTTGAAGGACA+AGG - Chr3:60163067-60163086 None:intergenic 50.0%
GGTCCATATGCAACACTGGT+TGG + Chr3:60162643-60162662 MsG0380014794.01.T01:CDS 50.0%
GGTTGGCACATAGATGCCAT+CGG + Chr3:60160774-60160793 MsG0380014794.01.T01:CDS 50.0%
GTATGGCCACTTATGGTCCT+TGG + Chr3:60161157-60161176 MsG0380014794.01.T01:CDS 50.0%
GTATGGTCAGTGAAGCATGG+TGG + Chr3:60162271-60162290 MsG0380014794.01.T01:CDS 50.0%
GTTGGATTCCATGGCCGATA+TGG + Chr3:60160753-60160772 MsG0380014794.01.T01:CDS 50.0%
TATCCACCATTACCTCCCCA+AGG - Chr3:60161177-60161196 None:intergenic 50.0%
TATGGTCCTTGGGGAGGTAA+TGG + Chr3:60161168-60161187 MsG0380014794.01.T01:CDS 50.0%
TGGGAGGAGTAGCATGTACT+TGG + Chr3:60162610-60162629 MsG0380014794.01.T01:CDS 50.0%
TTGGGGTCCATATGCAACAC+TGG + Chr3:60162639-60162658 MsG0380014794.01.T01:CDS 50.0%
! AGGTGGTAGGTTTTCATGGG+AGG + Chr3:60162594-60162613 MsG0380014794.01.T01:CDS 50.0%
! GGATCTCAAATGGACTCCGA+TGG - Chr3:60160793-60160812 None:intergenic 50.0%
! GTCGAAGGTATGGCCACTTA+TGG + Chr3:60161150-60161169 MsG0380014794.01.T01:CDS 50.0%
!! CTTGATGGCGAAGCTGTATG+GGG + Chr3:60161285-60161304 MsG0380014794.01.T01:CDS 50.0%
!! GTGAAGCATGGTGGTAATGG+AGG + Chr3:60162280-60162299 MsG0380014794.01.T01:intron 50.0%
ACCTCCCCAAGGACCATAAG+TGG - Chr3:60161166-60161185 None:intergenic 55.0%
CTTGGCTCCAGTTACTGGCA+AGG - Chr3:60160730-60160749 None:intergenic 55.0%
GAACCAGTTCCATGTGGACC+AGG + Chr3:60162118-60162137 MsG0380014794.01.T01:CDS 55.0%
GCTCAAAGGCCAGCCAAACT+TGG + Chr3:60161798-60161817 MsG0380014794.01.T01:CDS 55.0%
GGACAGGGCTTGAACCTTGA+AGG - Chr3:60163073-60163092 None:intergenic 55.0%
TCCATGTGGACCAGGTCCAT+GGG + Chr3:60162126-60162145 MsG0380014794.01.T01:CDS 55.0%
TGTGCCAACCATATCGGCCA+TGG - Chr3:60160764-60160783 None:intergenic 55.0%
TTCCATGTGGACCAGGTCCA+TGG + Chr3:60162125-60162144 MsG0380014794.01.T01:CDS 55.0%
! GGATACAAACATGGCGGAGC+TGG + Chr3:60161306-60161325 MsG0380014794.01.T01:CDS 55.0%
! TACAAACATGGCGGAGCTGG+AGG + Chr3:60161309-60161328 MsG0380014794.01.T01:CDS 55.0%
!! ATGGAGGAAGCACCACGCAT+AGG + Chr3:60162296-60162315 MsG0380014794.01.T01:intron 55.0%
!! TGGAGGAAGCACCACGCATA+GGG + Chr3:60162297-60162316 MsG0380014794.01.T01:intron 55.0%
CCATGTGGACCAGGTCCATG+GGG + Chr3:60162127-60162146 MsG0380014794.01.T01:CDS 60.0%
GCCACTTATGGTCCTTGGGG+AGG + Chr3:60161162-60161181 MsG0380014794.01.T01:CDS 60.0%
GGACCTGGTCCACATGGAAC+TGG - Chr3:60162124-60162143 None:intergenic 60.0%
GGAGGTAGACCCTGGGATGA+TGG + Chr3:60162157-60162176 MsG0380014794.01.T01:CDS 60.0%
TGGGGATGGAGGTAGACCCT+GGG + Chr3:60162150-60162169 MsG0380014794.01.T01:CDS 60.0%
TTGGACGGAGATGCTGGCAC+CGG - Chr3:60161735-60161754 None:intergenic 60.0%
! GGTCCTTGGGGAGGTAATGG+TGG + Chr3:60161171-60161190 MsG0380014794.01.T01:CDS 60.0%
CCCCATGGACCTGGTCCACA+TGG - Chr3:60162130-60162149 None:intergenic 65.0%
CTACCTCCATCCCCACCCCA+TGG - Chr3:60162145-60162164 None:intergenic 65.0%
GGTGCCAGCATCTCCGTCCA+AGG + Chr3:60161734-60161753 MsG0380014794.01.T01:CDS 65.0%
GTGGACCAGGTCCATGGGGT+GGG + Chr3:60162131-60162150 MsG0380014794.01.T01:CDS 65.0%
GTGGGGATGGAGGTAGACCC+TGG + Chr3:60162149-60162168 MsG0380014794.01.T01:CDS 65.0%
TGGACCAGGTCCATGGGGTG+GGG + Chr3:60162132-60162151 MsG0380014794.01.T01:CDS 65.0%
TGTGGACCAGGTCCATGGGG+TGG + Chr3:60162130-60162149 MsG0380014794.01.T01:CDS 65.0%
CCAGGTCCATGGGGTGGGGA+TGG + Chr3:60162136-60162155 MsG0380014794.01.T01:CDS 70.0%
CCATCCCCACCCCATGGACC+TGG - Chr3:60162139-60162158 None:intergenic 70.0%
GGTCCATGGGGTGGGGATGG+AGG + Chr3:60162139-60162158 MsG0380014794.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 60160558 60163113 60160558 ID=MsG0380014794.01;Name=MsG0380014794.01
Chr3 mRNA 60160558 60163113 60160558 ID=MsG0380014794.01.T01;Parent=MsG0380014794.01;Name=MsG0380014794.01.T01;_AED=0.21;_eAED=0.21;_QI=0|0.75|0.6|1|1|1|5|401|520
Chr3 exon 60160558 60161028 60160558 ID=MsG0380014794.01.T01:exon:14164;Parent=MsG0380014794.01.T01
Chr3 exon 60161120 60161347 60161120 ID=MsG0380014794.01.T01:exon:14165;Parent=MsG0380014794.01.T01
Chr3 exon 60161477 60161848 60161477 ID=MsG0380014794.01.T01:exon:14166;Parent=MsG0380014794.01.T01
Chr3 exon 60162097 60162292 60162097 ID=MsG0380014794.01.T01:exon:14167;Parent=MsG0380014794.01.T01
Chr3 exon 60162417 60163113 60162417 ID=MsG0380014794.01.T01:exon:14168;Parent=MsG0380014794.01.T01
Chr3 CDS 60160558 60161028 60160558 ID=MsG0380014794.01.T01:cds;Parent=MsG0380014794.01.T01
Chr3 CDS 60161120 60161347 60161120 ID=MsG0380014794.01.T01:cds;Parent=MsG0380014794.01.T01
Chr3 CDS 60161477 60161848 60161477 ID=MsG0380014794.01.T01:cds;Parent=MsG0380014794.01.T01
Chr3 CDS 60162097 60162292 60162097 ID=MsG0380014794.01.T01:cds;Parent=MsG0380014794.01.T01
Chr3 CDS 60162417 60162712 60162417 ID=MsG0380014794.01.T01:cds;Parent=MsG0380014794.01.T01
Chr3 three_prime_UTR 60162713 60163113 60162713 ID=MsG0380014794.01.T01:three_prime_utr;Parent=MsG0380014794.01.T01
Gene Sequence

>MsG0380014794.01.T01

ATGATTGTGGTGCAGATCAAGCTTGATTACCCAAATGAATTCCTAACATCCGTTGATGGATACTATGGTAGCTTGAATCAATTTGGACCAATCTTCATCAGGTCACTGAGTTTTGAGAGTAACAGGAAAATGTATGGACCATTTGGAGTTGAACAAGGAACATACTTTTCCTTGCCAGTAACTGGAGCCAAGATTGTTGGATTCCATGGCCGATATGGTTGGCACATAGATGCCATCGGAGTCCATTTGAGATCCTATCAGCAACCAAAACCATCGAAAACTTTGTCTTATCCACAGAACCAAATAACAAACACTACCGACGCTGTTGGTTATTCTGTAATACAAGGAAGTGTTAGCCAAGGCTTTGATATTGTTGTTGCTGTAAAACAGAAAGATGGTTCTGTCAAAGCTTCACCAAAAAATAAGATTCTCACCTTCAAAGAATCTAACAGTATTGAACCAAAAGAAAAGATAGTTCCTATGTTGAAGGCACCATCAATAGTCGAAGGTATGGCCACTTATGGTCCTTGGGGAGGTAATGGTGGATATGTATTTGATGATGGACCTTACACTGGAATCAGGCAAATTGATTTGTCGCGTAACATTGGAATTGTGTGGATTAGAGCATTGTATGATCTTGATGGCGAAGCTGTATGGGGATACAAACATGGCGGAGCTGGAGGATTCAAACATGAAAAGATGATCTTTGACTTCCCATATGAAGTATTAACACATATATCAGGCTACTATGGATCTCTGATGTACATGGGGCCTTCTATTATAAGGTCACTTACATTCCACACCACCAAAAGGATTTATGGACCATTTGGAGATGAAAATGGAACTTATTTCACAACAAAGCTGAAAGAAGGACAGATAGTTGGCATTCATGGTAGAAAAGGTTTATTTCTAGATGCTCTTGGTGTACATGTGATGGAAGGAAAAGTGATAGTTCCGGTGCCAGCATCTCCGTCCAAGGAAATCATCCCAAGAGAACCAAGTATTACTGAAATAAAAAATGCTCAAAGGCCAGCCAAACTTGGACATTCTAAATCAGCACCACTTGAAGAGGTTTCTCGTGGTGTGACTCAAGAACCAGTTCCATGTGGACCAGGTCCATGGGGTGGGGATGGAGGTAGACCCTGGGATGATGGAGTCTTTTCCGATGTTAAGCAGATTTATTTGTCAAAATCACCTGAAGGAATTTGCTCAATTCAAATCGAGTACGATCGAAATAAGCAATCTGTATGGTCAGTGAAGCATGGTGGTAAAATTGGACTATCCAATGAGGTTCTCTCTTGCATAACAGGCTATCATGGTCCGATTGCTACCGATGAACAAGCTATAGTGATTAAGTCACTGACTTTCCAAACTAGTAGAGGAAAGTATGGTCCATTTGGTGATGAAGTAGGGAAATTTTTCACTTCAACCAAAACTGAGGGAAAGGTGGTAGGTTTTCATGGGAGGAGTAGCATGTACTTGGATGCAATTGGGGTCCATATGCAACACTGGTTGGGAAGTCAGAAAACTTCAAGGTCATCGTCCCTCTTCAAGCTATTTTGA

Protein sequence

>MsG0380014794.01.T01

MIVVQIKLDYPNEFLTSVDGYYGSLNQFGPIFIRSLSFESNRKMYGPFGVEQGTYFSLPVTGAKIVGFHGRYGWHIDAIGVHLRSYQQPKPSKTLSYPQNQITNTTDAVGYSVIQGSVSQGFDIVVAVKQKDGSVKASPKNKILTFKESNSIEPKEKIVPMLKAPSIVEGMATYGPWGGNGGYVFDDGPYTGIRQIDLSRNIGIVWIRALYDLDGEAVWGYKHGGAGGFKHEKMIFDFPYEVLTHISGYYGSLMYMGPSIIRSLTFHTTKRIYGPFGDENGTYFTTKLKEGQIVGIHGRKGLFLDALGVHVMEGKVIVPVPASPSKEIIPREPSITEIKNAQRPAKLGHSKSAPLEEVSRGVTQEPVPCGPGPWGGDGGRPWDDGVFSDVKQIYLSKSPEGICSIQIEYDRNKQSVWSVKHGGKIGLSNEVLSCITGYHGPIATDEQAIVIKSLTFQTSRGKYGPFGDEVGKFFTSTKTEGKVVGFHGRSSMYLDAIGVHMQHWLGSQKTSRSSSLFKLF*