Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005115.01.T01 | KEH25995.1 | 31.441 | 458 | 252 | 10 | 24 | 428 | 19 | 467 | 1.36E-56 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005115.01.T01 | A0A072UJI6 | 31.441 | 458 | 252 | 10 | 24 | 428 | 19 | 467 | 6.51e-57 | 206 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005115.01.T01 | MTR_6g039060 | 31.441 | 458 | 252 | 10 | 24 | 428 | 19 | 467 | 1.65e-60 | 206 |
| MsG0180005115.01.T01 | MTR_3g047490 | 35.821 | 335 | 160 | 7 | 1 | 292 | 1 | 323 | 5.60e-55 | 185 |
| MsG0180005115.01.T01 | MTR_5g049460 | 29.436 | 479 | 247 | 8 | 24 | 417 | 19 | 491 | 5.64e-52 | 182 |
| MsG0180005115.01.T01 | MTR_0132s0050 | 34.216 | 453 | 250 | 11 | 1 | 421 | 1 | 437 | 1.74e-51 | 181 |
| MsG0180005115.01.T01 | MTR_0010s0130 | 32.864 | 426 | 248 | 12 | 24 | 423 | 19 | 432 | 4.32e-47 | 171 |
| MsG0180005115.01.T01 | MTR_0387s0030 | 29.814 | 483 | 229 | 11 | 1 | 428 | 1 | 428 | 2.18e-45 | 167 |
| MsG0180005115.01.T01 | MTR_0752s0020 | 30.353 | 481 | 229 | 19 | 1 | 423 | 1 | 433 | 1.03e-44 | 164 |
| MsG0180005115.01.T01 | MTR_6g052660 | 29.048 | 420 | 221 | 12 | 34 | 388 | 6 | 413 | 7.97e-42 | 157 |
| MsG0180005115.01.T01 | MTR_0195s0040 | 26.953 | 512 | 275 | 15 | 14 | 428 | 13 | 522 | 3.51e-41 | 154 |
| MsG0180005115.01.T01 | MTR_6g047410 | 28.228 | 457 | 257 | 16 | 26 | 421 | 24 | 470 | 3.25e-38 | 147 |
| MsG0180005115.01.T01 | MTR_4g053915 | 29.909 | 331 | 177 | 7 | 26 | 308 | 25 | 348 | 8.10e-38 | 144 |
| MsG0180005115.01.T01 | MTR_5g084777 | 38.117 | 223 | 120 | 7 | 26 | 235 | 24 | 241 | 4.96e-37 | 144 |
| MsG0180005115.01.T01 | MTR_6g471790 | 36.937 | 222 | 124 | 5 | 26 | 235 | 24 | 241 | 1.19e-36 | 143 |
| MsG0180005115.01.T01 | MTR_7g099763 | 37.156 | 218 | 129 | 4 | 26 | 235 | 24 | 241 | 1.22e-36 | 136 |
| MsG0180005115.01.T01 | MTR_8g012072 | 36.937 | 222 | 124 | 5 | 26 | 235 | 24 | 241 | 1.24e-36 | 143 |
| MsG0180005115.01.T01 | MTR_3g436570 | 36.937 | 222 | 124 | 5 | 26 | 235 | 24 | 241 | 1.27e-36 | 143 |
| MsG0180005115.01.T01 | MTR_0133s0060 | 36.937 | 222 | 124 | 5 | 26 | 235 | 24 | 241 | 1.34e-36 | 143 |
| MsG0180005115.01.T01 | MTR_8g087757 | 36.937 | 222 | 124 | 5 | 26 | 235 | 24 | 241 | 1.46e-36 | 143 |
| MsG0180005115.01.T01 | MTR_5g459570 | 36.937 | 222 | 124 | 5 | 26 | 235 | 24 | 241 | 1.69e-36 | 141 |
| MsG0180005115.01.T01 | MTR_5g056945 | 32.950 | 261 | 151 | 6 | 1 | 246 | 1 | 252 | 4.20e-36 | 135 |
| MsG0180005115.01.T01 | MTR_3g048350 | 28.475 | 446 | 238 | 14 | 34 | 406 | 6 | 443 | 4.52e-36 | 141 |
| MsG0180005115.01.T01 | MTR_7g068680 | 34.188 | 234 | 137 | 4 | 26 | 246 | 25 | 254 | 9.81e-36 | 136 |
| MsG0180005115.01.T01 | MTR_7g024373 | 36.486 | 222 | 125 | 5 | 26 | 235 | 24 | 241 | 1.37e-35 | 140 |
| MsG0180005115.01.T01 | MTR_4g119430 | 30.476 | 315 | 170 | 9 | 26 | 295 | 24 | 334 | 4.13e-35 | 137 |
| MsG0180005115.01.T01 | MTR_6g464050 | 26.667 | 465 | 235 | 13 | 14 | 428 | 13 | 421 | 5.58e-35 | 138 |
| MsG0180005115.01.T01 | MTR_7g009270 | 30.159 | 315 | 171 | 9 | 26 | 295 | 25 | 335 | 2.79e-34 | 136 |
| MsG0180005115.01.T01 | MTR_1465s0010 | 28.118 | 441 | 212 | 16 | 26 | 397 | 13 | 417 | 5.94e-34 | 132 |
| MsG0180005115.01.T01 | MTR_4g046907 | 31.421 | 366 | 183 | 12 | 113 | 428 | 1 | 348 | 1.05e-33 | 132 |
| MsG0180005115.01.T01 | MTR_0547s0010 | 31.421 | 366 | 183 | 12 | 113 | 428 | 1 | 348 | 1.17e-33 | 131 |
| MsG0180005115.01.T01 | MTR_0454s0020 | 28.453 | 362 | 202 | 10 | 36 | 343 | 147 | 505 | 1.35e-31 | 127 |
| MsG0180005115.01.T01 | MTR_0015s0160 | 32.051 | 234 | 142 | 4 | 26 | 246 | 25 | 254 | 1.95e-30 | 123 |
| MsG0180005115.01.T01 | MTR_1g053665 | 33.566 | 286 | 159 | 9 | 80 | 351 | 24 | 292 | 5.24e-29 | 117 |
| MsG0180005115.01.T01 | MTR_7g027027 | 40.341 | 176 | 96 | 5 | 26 | 193 | 24 | 198 | 1.64e-28 | 111 |
| MsG0180005115.01.T01 | MTR_6g049080 | 27.415 | 383 | 183 | 10 | 24 | 368 | 19 | 344 | 3.18e-28 | 115 |
| MsG0180005115.01.T01 | MTR_0002s0140 | 43.796 | 137 | 73 | 1 | 24 | 156 | 19 | 155 | 1.09e-26 | 108 |
| MsG0180005115.01.T01 | MTR_6g033905 | 25.231 | 432 | 223 | 10 | 26 | 421 | 25 | 392 | 4.13e-25 | 108 |
| MsG0180005115.01.T01 | MTR_1g099290 | 28.626 | 262 | 158 | 6 | 62 | 315 | 320 | 560 | 1.21e-23 | 103 |
| MsG0180005115.01.T01 | MTR_0322s0040 | 24.318 | 403 | 217 | 11 | 26 | 375 | 25 | 392 | 2.72e-22 | 99.0 |
| MsG0180005115.01.T01 | MTR_3g436840 | 29.831 | 295 | 137 | 9 | 1 | 295 | 1 | 225 | 3.12e-22 | 99.0 |
| MsG0180005115.01.T01 | MTR_8g468090 | 25.625 | 320 | 167 | 10 | 68 | 336 | 2 | 301 | 9.74e-22 | 97.8 |
| MsG0180005115.01.T01 | MTR_3g450160 | 29.609 | 179 | 119 | 3 | 72 | 243 | 1 | 179 | 6.00e-21 | 95.9 |
| MsG0180005115.01.T01 | MTR_7g038780 | 22.472 | 356 | 211 | 11 | 26 | 336 | 25 | 360 | 3.54e-19 | 89.7 |
| MsG0180005115.01.T01 | MTR_0324s0040 | 24.653 | 288 | 165 | 8 | 106 | 344 | 10 | 294 | 1.11e-15 | 78.2 |
| MsG0180005115.01.T01 | MTR_7g045830 | 25.987 | 304 | 180 | 6 | 30 | 309 | 1 | 283 | 2.91e-15 | 77.4 |
| MsG0180005115.01.T01 | MTR_1g423950 | 43.836 | 73 | 41 | 0 | 26 | 98 | 24 | 96 | 1.04e-13 | 67.8 |
| MsG0180005115.01.T01 | MTR_3g040210 | 27.148 | 291 | 135 | 9 | 20 | 308 | 4 | 219 | 1.87e-13 | 72.0 |
| MsG0180005115.01.T01 | MTR_3g031890 | 42.683 | 82 | 43 | 3 | 26 | 104 | 25 | 105 | 1.30e-12 | 65.5 |
| MsG0180005115.01.T01 | MTR_1g052035 | 42.000 | 100 | 51 | 4 | 1 | 99 | 1 | 94 | 6.45e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 98 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACTTTCCTCCCATCTTTA+AGG | 0.153003 | 1:-87245065 | MsG0180005115.01.T01:CDS |
| TGACTCTACTTGAACTATTA+AGG | 0.226667 | 1:+87245920 | None:intergenic |
| CTTCCTTCCTGACTATTTCT+TGG | 0.228529 | 1:+87245568 | None:intergenic |
| GCCTTCTTCTTCTTCAGCTT+GGG | 0.265675 | 1:+87244653 | None:intergenic |
| AGGTTACTACAACACTCTTT+TGG | 0.268967 | 1:-87245532 | MsG0180005115.01.T01:CDS |
| TGAACTTGGTCAAGGACTTT+TGG | 0.305016 | 1:-87245791 | MsG0180005115.01.T01:CDS |
| GAATGATCCATTACATATCT+TGG | 0.317467 | 1:+87245345 | None:intergenic |
| AATTTACTTCATGGCTATTC+TGG | 0.318612 | 1:-87245382 | MsG0180005115.01.T01:CDS |
| CTGCTGAAACTGAGATAATC+AGG | 0.323360 | 1:-87245087 | MsG0180005115.01.T01:CDS |
| ACGTCCTCAGTGATGGTTAT+AGG | 0.334141 | 1:+87245630 | None:intergenic |
| GAAGCTAGCAATTTACTTCA+TGG | 0.334384 | 1:-87245391 | MsG0180005115.01.T01:CDS |
| AAGCAAAGCGTATCAGAATC+TGG | 0.338583 | 1:-87245984 | MsG0180005115.01.T01:CDS |
| CATTTGATAGCTTAGAAATA+AGG | 0.347561 | 1:-87245671 | MsG0180005115.01.T01:CDS |
| GCTTCTTTGATGAACTTCAT+AGG | 0.347586 | 1:+87245142 | None:intergenic |
| CTGGCCTTCTTTCCTTTAGT+AGG | 0.350006 | 1:+87244851 | None:intergenic |
| AGCCTTCTTCTTCTTCAGCT+TGG | 0.352894 | 1:+87244652 | None:intergenic |
| TGCTAGCTTCTGTTGATTGT+TGG | 0.363863 | 1:+87245404 | None:intergenic |
| GAGTATTTCAAGATGCTAAA+TGG | 0.364249 | 1:-87245825 | MsG0180005115.01.T01:CDS |
| TTCTGACTCAGTACTAGTTC+TGG | 0.378125 | 1:+87244832 | None:intergenic |
| GCTAGCTTCTGTTGATTGTT+GGG | 0.380746 | 1:+87245405 | None:intergenic |
| GCTTCTGTTGATTGTTGGGT+TGG | 0.399652 | 1:+87245409 | None:intergenic |
| GGAGGAAGCTCTTGAAGAAA+TGG | 0.399926 | 1:-87244693 | MsG0180005115.01.T01:CDS |
| ACGTTATAGCTAAAGCTTGT+AGG | 0.401395 | 1:-87245611 | MsG0180005115.01.T01:CDS |
| TTCTGACACAGCAACTGCTT+TGG | 0.413585 | 1:+87244937 | None:intergenic |
| AGAGTCACTTTCCTTAAAGA+TGG | 0.416859 | 1:+87245054 | None:intergenic |
| CTTCTTCTTCAGCTTGGGAT+CGG | 0.423630 | 1:+87244658 | None:intergenic |
| AGATGCAAAGCCTTCTGAAA+TGG | 0.433259 | 1:-87245499 | MsG0180005115.01.T01:CDS |
| GAAGATTCCAAGAAATAGTC+AGG | 0.435830 | 1:-87245575 | MsG0180005115.01.T01:CDS |
| AATCTACAAAGAGAAGACTA+TGG | 0.442901 | 1:-87245958 | MsG0180005115.01.T01:CDS |
| CCTTCAACTTGTGAGTCCTA+TGG | 0.444502 | 1:-87244627 | MsG0180005115.01.T01:CDS |
| TGGTTGAGATGACTCCAATA+AGG | 0.447143 | 1:-87244607 | MsG0180005115.01.T01:CDS |
| CTGATGCACCTAAAGGGAAA+AGG | 0.457007 | 1:-87244904 | MsG0180005115.01.T01:CDS |
| GGAGGAAGATGCGAGGTCTC+AGG | 0.460578 | 1:-87244996 | MsG0180005115.01.T01:CDS |
| GAGGAAGCTGCTCTTGCTAA+AGG | 0.460692 | 1:-87244974 | MsG0180005115.01.T01:CDS |
| AATGATCCATTACATATCTT+GGG | 0.461250 | 1:+87245346 | None:intergenic |
| CTTCTTTGATGAACTTCATA+GGG | 0.462202 | 1:+87245143 | None:intergenic |
| AGAAATAAGGTCTGAAGTGA+TGG | 0.475662 | 1:-87245658 | MsG0180005115.01.T01:CDS |
| AGGAAGCTGCTCTTGCTAAA+GGG | 0.478652 | 1:-87244973 | MsG0180005115.01.T01:CDS |
| GATTGCTTCTTTCAAAGAGC+AGG | 0.488635 | 1:-87245441 | MsG0180005115.01.T01:CDS |
| CTGTTTCTGATGCACCTAAA+GGG | 0.489553 | 1:-87244910 | MsG0180005115.01.T01:CDS |
| TGGACCAACATATGTGAACT+TGG | 0.489582 | 1:-87245805 | MsG0180005115.01.T01:CDS |
| TCTAAGCTATCAAATGATGT+AGG | 0.490834 | 1:+87245678 | None:intergenic |
| CTGAAATGGAGATTCACAAC+AGG | 0.491040 | 1:-87245485 | MsG0180005115.01.T01:CDS |
| AGATGACTCCAATAAGGAAA+AGG | 0.494448 | 1:-87244601 | MsG0180005115.01.T01:CDS |
| TCTGATGCTGCTCCTACTAA+AGG | 0.495320 | 1:-87244863 | MsG0180005115.01.T01:CDS |
| ATCAGATTCAGAACTAGTTC+TGG | 0.499274 | 1:+87244880 | None:intergenic |
| AGAAGACTATGGATATTCCA+TGG | 0.500726 | 1:-87245947 | MsG0180005115.01.T01:CDS |
| AAACAAGCTGGGTCAAAGAA+AGG | 0.502080 | 1:-87245723 | MsG0180005115.01.T01:CDS |
| AAAGAAAGGGAAAATGATCA+TGG | 0.505028 | 1:-87245709 | MsG0180005115.01.T01:CDS |
| GCTGTTTCTGATGCACCTAA+AGG | 0.505921 | 1:-87244911 | MsG0180005115.01.T01:CDS |
| TGATGCACCTAAAGGGAAAA+GGG | 0.511185 | 1:-87244903 | MsG0180005115.01.T01:CDS |
| AACAAGCTGGGTCAAAGAAA+GGG | 0.513083 | 1:-87245722 | MsG0180005115.01.T01:CDS |
| TGCTCCTACTAAAGGAAAGA+AGG | 0.516416 | 1:-87244855 | MsG0180005115.01.T01:CDS |
| CTGAAAGGACTATCAGTAGC+AGG | 0.525113 | 1:-87245174 | MsG0180005115.01.T01:CDS |
| TTGTGAATCTCCATTTCAGA+AGG | 0.526263 | 1:+87245489 | None:intergenic |
| ATCAGTAGCTGAGTACGTCT+TGG | 0.528893 | 1:-87245017 | MsG0180005115.01.T01:CDS |
| AGCAAAGCGTATCAGAATCT+GGG | 0.533512 | 1:-87245983 | MsG0180005115.01.T01:CDS |
| CATAGGACTCACAAGTTGAA+GGG | 0.535256 | 1:+87244628 | None:intergenic |
| GAGTCACTTTCCTTAAAGAT+GGG | 0.539345 | 1:+87245055 | None:intergenic |
| TTGACCAAGTTCACATATGT+TGG | 0.542685 | 1:+87245801 | None:intergenic |
| AAAGTCGTAAGCAAACAAGC+TGG | 0.548529 | 1:-87245735 | MsG0180005115.01.T01:CDS |
| TGTTGTAGTAACCTTGTAGC+AGG | 0.549844 | 1:+87245541 | None:intergenic |
| AGCTATAACGTCCTCAGTGA+TGG | 0.550655 | 1:+87245623 | None:intergenic |
| CCATAGGACTCACAAGTTGA+AGG | 0.557869 | 1:+87244627 | None:intergenic |
| TGCTAAAGGGAAAGGCAAGA+AGG | 0.557921 | 1:-87244960 | MsG0180005115.01.T01:CDS |
| AAGCCCCTAAAGATGAAAAG+TGG | 0.558761 | 1:-87245123 | MsG0180005115.01.T01:CDS |
| GAAATAAGGTCTGAAGTGAT+GGG | 0.560325 | 1:-87245657 | MsG0180005115.01.T01:CDS |
| ATTCCAAGAAATAGTCAGGA+AGG | 0.562379 | 1:-87245571 | MsG0180005115.01.T01:CDS |
| TGCTTCTTTCAAAGAGCAGG+AGG | 0.563512 | 1:-87245438 | MsG0180005115.01.T01:CDS |
| ATTGGAGTCATCTCAACCAT+AGG | 0.564208 | 1:+87244611 | None:intergenic |
| CAAGAAGTATGAAGTAAACA+TGG | 0.567275 | 1:-87245877 | MsG0180005115.01.T01:CDS |
| AAGGAAGATGTCCTGCTACA+AGG | 0.568237 | 1:-87245552 | MsG0180005115.01.T01:CDS |
| AGTAGCTGAGTACGTCTTGG+AGG | 0.574153 | 1:-87245014 | MsG0180005115.01.T01:CDS |
| TGAACTATTAAGGATTCCCA+TGG | 0.576043 | 1:+87245930 | None:intergenic |
| GCTGCTCTTGCTAAAGGGAA+AGG | 0.581656 | 1:-87244968 | MsG0180005115.01.T01:CDS |
| ACTCAGCTACTGATTGAACT+AGG | 0.585948 | 1:+87245026 | None:intergenic |
| GGAGATTCACAACAGGATGT+TGG | 0.588861 | 1:-87245478 | MsG0180005115.01.T01:CDS |
| TGAAGAAATGGAGAAAGAAG+AGG | 0.590995 | 1:-87244681 | MsG0180005115.01.T01:CDS |
| AAGTCGTAAGCAAACAAGCT+GGG | 0.591113 | 1:-87245734 | MsG0180005115.01.T01:CDS |
| AATAGTTCAAGTAGAGTCAC+CGG | 0.592431 | 1:-87245916 | MsG0180005115.01.T01:CDS |
| GCTTGTAGGATGAATGCAGA+GGG | 0.594140 | 1:-87245597 | MsG0180005115.01.T01:CDS |
| GACTCCAATAAGGAAAAGGA+TGG | 0.600286 | 1:-87244597 | MsG0180005115.01.T01:CDS |
| AGGTACTGGAGTTCTTAAGA+AGG | 0.600706 | 1:-87245237 | MsG0180005115.01.T01:CDS |
| GAAGACTATGGATATTCCAT+GGG | 0.608051 | 1:-87245946 | MsG0180005115.01.T01:CDS |
| TCACTTTCCTTAAAGATGGG+AGG | 0.608137 | 1:+87245058 | None:intergenic |
| AAGTATGAAGTAAACATGGA+AGG | 0.610824 | 1:-87245873 | MsG0180005115.01.T01:CDS |
| TCGAAGTCTCTACTGCTGAA+AGG | 0.616687 | 1:-87245189 | MsG0180005115.01.T01:CDS |
| TCCCAAGCTGAAGAAGAAGA+AGG | 0.619996 | 1:-87244654 | MsG0180005115.01.T01:CDS |
| TGCTGAAACTGAGATAATCA+GGG | 0.625436 | 1:-87245086 | MsG0180005115.01.T01:CDS |
| TTGAGTGAAGCAAAATCCAC+CGG | 0.625573 | 1:+87245897 | None:intergenic |
| GGAAGATGCGAGGTCTCAGG+AGG | 0.628698 | 1:-87244993 | MsG0180005115.01.T01:CDS |
| AACATATGTGAACTTGGTCA+AGG | 0.631522 | 1:-87245799 | MsG0180005115.01.T01:CDS |
| ATAGGACTCACAAGTTGAAG+GGG | 0.642424 | 1:+87244629 | None:intergenic |
| TGGAGTTCTTAAGAAGGACA+AGG | 0.682060 | 1:-87245231 | MsG0180005115.01.T01:CDS |
| AGTTCAAGTAGAGTCACCGG+TGG | 0.701435 | 1:-87245913 | MsG0180005115.01.T01:CDS |
| ACGTCTTGGAGGAAGATGCG+AGG | 0.711757 | 1:-87245003 | MsG0180005115.01.T01:CDS |
| AGCTTGTAGGATGAATGCAG+AGG | 0.721361 | 1:-87245598 | MsG0180005115.01.T01:CDS |
| CATTCCTATAACCATCACTG+AGG | 0.778544 | 1:-87245634 | MsG0180005115.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATGATCCATTACATATCTT+GGG | + | Chr1:87245245-87245264 | None:intergenic | 25.0% |
| !! | CATTTGATAGCTTAGAAATA+AGG | - | Chr1:87244917-87244936 | MsG0180005115.01.T01:CDS | 25.0% |
| !! | TGAAATCTTTTATCAAGGAA+AGG | - | Chr1:87245331-87245350 | MsG0180005115.01.T01:intron | 25.0% |
| AAACTTCCCAAGATATGTAA+TGG | - | Chr1:87245236-87245255 | MsG0180005115.01.T01:CDS | 30.0% | |
| AAAGAAAGGGAAAATGATCA+TGG | - | Chr1:87244879-87244898 | MsG0180005115.01.T01:CDS | 30.0% | |
| AAGTATGAAGTAAACATGGA+AGG | - | Chr1:87244715-87244734 | MsG0180005115.01.T01:intron | 30.0% | |
| AATCTACAAAGAGAAGACTA+TGG | - | Chr1:87244630-87244649 | MsG0180005115.01.T01:CDS | 30.0% | |
| AATTTACTTCATGGCTATTC+TGG | - | Chr1:87245206-87245225 | MsG0180005115.01.T01:CDS | 30.0% | |
| ATTCCTCAGAAAAGAAGAAA+AGG | - | Chr1:87245839-87245858 | MsG0180005115.01.T01:CDS | 30.0% | |
| CTTCTTTGATGAACTTCATA+GGG | + | Chr1:87245448-87245467 | None:intergenic | 30.0% | |
| GAATGATCCATTACATATCT+TGG | + | Chr1:87245246-87245265 | None:intergenic | 30.0% | |
| GAGTATTTCAAGATGCTAAA+TGG | - | Chr1:87244763-87244782 | MsG0180005115.01.T01:intron | 30.0% | |
| TCAGAAAAGAAGAAAAGGTA+AGG | - | Chr1:87245844-87245863 | MsG0180005115.01.T01:CDS | 30.0% | |
| TCTAAGCTATCAAATGATGT+AGG | + | Chr1:87244913-87244932 | None:intergenic | 30.0% | |
| TGACTCTACTTGAACTATTA+AGG | + | Chr1:87244671-87244690 | None:intergenic | 30.0% | |
| ! | CAAGAAGTATGAAGTAAACA+TGG | - | Chr1:87244711-87244730 | MsG0180005115.01.T01:intron | 30.0% |
| ! | TCTGATAGTGCTTTCATTTA+TGG | + | Chr1:87245276-87245295 | None:intergenic | 30.0% |
| ! | TTACCTTTTCTTCTTTTCTG+AGG | + | Chr1:87245845-87245864 | None:intergenic | 30.0% |
| !! | ATAAATGAAAGCACTATCAG+AGG | - | Chr1:87245275-87245294 | MsG0180005115.01.T01:intron | 30.0% |
| !! | CTAACCACTTTTCATCTTTA+GGG | + | Chr1:87245472-87245491 | None:intergenic | 30.0% |
| !! | CTGTCTGAAATCTTTTATCA+AGG | - | Chr1:87245326-87245345 | MsG0180005115.01.T01:intron | 30.0% |
| !! | TAACCACTTTTCATCTTTAG+GGG | + | Chr1:87245471-87245490 | None:intergenic | 30.0% |
| !! | TCTAACCACTTTTCATCTTT+AGG | + | Chr1:87245473-87245492 | None:intergenic | 30.0% |
| AACATATGTGAACTTGGTCA+AGG | - | Chr1:87244789-87244808 | MsG0180005115.01.T01:intron | 35.0% | |
| AAGAAAAGGTAAGGCAGATT+TGG | - | Chr1:87245853-87245872 | MsG0180005115.01.T01:CDS | 35.0% | |
| AATAGTTCAAGTAGAGTCAC+CGG | - | Chr1:87244672-87244691 | MsG0180005115.01.T01:CDS | 35.0% | |
| ACGTTATAGCTAAAGCTTGT+AGG | - | Chr1:87244977-87244996 | MsG0180005115.01.T01:CDS | 35.0% | |
| AGAAGACTATGGATATTCCA+TGG | - | Chr1:87244641-87244660 | MsG0180005115.01.T01:CDS | 35.0% | |
| AGATGACTCCAATAAGGAAA+AGG | - | Chr1:87245987-87246006 | MsG0180005115.01.T01:CDS | 35.0% | |
| ATCAGATTCAGAACTAGTTC+TGG | + | Chr1:87245711-87245730 | None:intergenic | 35.0% | |
| ATTCCAAGAAATAGTCAGGA+AGG | - | Chr1:87245017-87245036 | MsG0180005115.01.T01:CDS | 35.0% | |
| GAAGACTATGGATATTCCAT+GGG | - | Chr1:87244642-87244661 | MsG0180005115.01.T01:CDS | 35.0% | |
| GAAGATTCCAAGAAATAGTC+AGG | - | Chr1:87245013-87245032 | MsG0180005115.01.T01:CDS | 35.0% | |
| GAAGCTAGCAATTTACTTCA+TGG | - | Chr1:87245197-87245216 | MsG0180005115.01.T01:CDS | 35.0% | |
| GCTTCTTTGATGAACTTCAT+AGG | + | Chr1:87245449-87245468 | None:intergenic | 35.0% | |
| TGAACTATTAAGGATTCCCA+TGG | + | Chr1:87244661-87244680 | None:intergenic | 35.0% | |
| TGAAGAAATGGAGAAAGAAG+AGG | - | Chr1:87245907-87245926 | MsG0180005115.01.T01:CDS | 35.0% | |
| TGCTGAAACTGAGATAATCA+GGG | - | Chr1:87245502-87245521 | MsG0180005115.01.T01:CDS | 35.0% | |
| TTGACCAAGTTCACATATGT+TGG | + | Chr1:87244790-87244809 | None:intergenic | 35.0% | |
| TTGTGAATCTCCATTTCAGA+AGG | + | Chr1:87245102-87245121 | None:intergenic | 35.0% | |
| ! | AGAAATAAGGTCTGAAGTGA+TGG | - | Chr1:87244930-87244949 | MsG0180005115.01.T01:CDS | 35.0% |
| ! | AGAGTCACTTTCCTTAAAGA+TGG | + | Chr1:87245537-87245556 | None:intergenic | 35.0% |
| ! | AGGTTACTACAACACTCTTT+TGG | - | Chr1:87245056-87245075 | MsG0180005115.01.T01:CDS | 35.0% |
| ! | CCTTTTTCCTTGATAGAAAC+AGG | + | Chr1:87245791-87245810 | None:intergenic | 35.0% |
| ! | GAAATAAGGTCTGAAGTGAT+GGG | - | Chr1:87244931-87244950 | MsG0180005115.01.T01:CDS | 35.0% |
| ! | GAGTCACTTTCCTTAAAGAT+GGG | + | Chr1:87245536-87245555 | None:intergenic | 35.0% |
| ! | GGTTACTACAACACTCTTTT+GGG | - | Chr1:87245057-87245076 | MsG0180005115.01.T01:CDS | 35.0% |
| !! | ATGTAATGGATCATTCTGCT+GGG | - | Chr1:87245250-87245269 | MsG0180005115.01.T01:intron | 35.0% |
| !! | CCTGTTTCTATCAAGGAAAA+AGG | - | Chr1:87245788-87245807 | MsG0180005115.01.T01:CDS | 35.0% |
| !! | CTTTTATCAAGGAAAGGTAC+TGG | - | Chr1:87245337-87245356 | MsG0180005115.01.T01:intron | 35.0% |
| !! | TATGTAATGGATCATTCTGC+TGG | - | Chr1:87245249-87245268 | MsG0180005115.01.T01:intron | 35.0% |
| !! | TCTTCTTTTCTGAGGAATAG+AGG | + | Chr1:87245837-87245856 | None:intergenic | 35.0% |
| !! | TGCTAAACCTGTTTCTATCA+AGG | - | Chr1:87245781-87245800 | MsG0180005115.01.T01:CDS | 35.0% |
| AAACAAGCTGGGTCAAAGAA+AGG | - | Chr1:87244865-87244884 | MsG0180005115.01.T01:CDS | 40.0% | |
| AAAGGAAAGATGCAGTAGGT+TGG | - | Chr1:87245806-87245825 | MsG0180005115.01.T01:CDS | 40.0% | |
| AAAGTCGTAAGCAAACAAGC+TGG | - | Chr1:87244853-87244872 | MsG0180005115.01.T01:CDS | 40.0% | |
| AACAAGCTGGGTCAAAGAAA+GGG | - | Chr1:87244866-87244885 | MsG0180005115.01.T01:CDS | 40.0% | |
| AAGCAAAGCGTATCAGAATC+TGG | - | Chr1:87244604-87244623 | MsG0180005115.01.T01:CDS | 40.0% | |
| AAGCCCCTAAAGATGAAAAG+TGG | - | Chr1:87245465-87245484 | MsG0180005115.01.T01:CDS | 40.0% | |
| AAGTCGTAAGCAAACAAGCT+GGG | - | Chr1:87244854-87244873 | MsG0180005115.01.T01:CDS | 40.0% | |
| AGCAAAGCGTATCAGAATCT+GGG | - | Chr1:87244605-87244624 | MsG0180005115.01.T01:CDS | 40.0% | |
| ATTGGAGTCATCTCAACCAT+AGG | + | Chr1:87245980-87245999 | None:intergenic | 40.0% | |
| CATTCCTATAACCATCACTG+AGG | - | Chr1:87244954-87244973 | MsG0180005115.01.T01:CDS | 40.0% | |
| CTGAAATGGAGATTCACAAC+AGG | - | Chr1:87245103-87245122 | MsG0180005115.01.T01:CDS | 40.0% | |
| CTGCTGAAACTGAGATAATC+AGG | - | Chr1:87245501-87245520 | MsG0180005115.01.T01:CDS | 40.0% | |
| GACTCCAATAAGGAAAAGGA+TGG | - | Chr1:87245991-87246010 | MsG0180005115.01.T01:CDS | 40.0% | |
| GATTGCTTCTTTCAAAGAGC+AGG | - | Chr1:87245147-87245166 | MsG0180005115.01.T01:CDS | 40.0% | |
| GGAAAAAGGAAAGATGCAGT+AGG | - | Chr1:87245802-87245821 | MsG0180005115.01.T01:CDS | 40.0% | |
| GGAAGAAAACAAGTACCCTA+TGG | - | Chr1:87245296-87245315 | MsG0180005115.01.T01:intron | 40.0% | |
| TCACTTTCCTTAAAGATGGG+AGG | + | Chr1:87245533-87245552 | None:intergenic | 40.0% | |
| TCAGACAGCAATCTTCCATA+GGG | + | Chr1:87245314-87245333 | None:intergenic | 40.0% | |
| TGATGCACCTAAAGGGAAAA+GGG | - | Chr1:87245685-87245704 | MsG0180005115.01.T01:CDS | 40.0% | |
| TGCTCCTACTAAAGGAAAGA+AGG | - | Chr1:87245733-87245752 | MsG0180005115.01.T01:CDS | 40.0% | |
| TGGACCAACATATGTGAACT+TGG | - | Chr1:87244783-87244802 | MsG0180005115.01.T01:intron | 40.0% | |
| TGGAGTTCTTAAGAAGGACA+AGG | - | Chr1:87245357-87245376 | MsG0180005115.01.T01:intron | 40.0% | |
| TGGTTGAGATGACTCCAATA+AGG | - | Chr1:87245981-87246000 | MsG0180005115.01.T01:CDS | 40.0% | |
| TGTTGTAGTAACCTTGTAGC+AGG | + | Chr1:87245050-87245069 | None:intergenic | 40.0% | |
| TTCAGACAGCAATCTTCCAT+AGG | + | Chr1:87245315-87245334 | None:intergenic | 40.0% | |
| TTCTGACTCAGTACTAGTTC+TGG | + | Chr1:87245759-87245778 | None:intergenic | 40.0% | |
| TTGAGTGAAGCAAAATCCAC+CGG | + | Chr1:87244694-87244713 | None:intergenic | 40.0% | |
| ! | ACTCAGCTACTGATTGAACT+AGG | + | Chr1:87245565-87245584 | None:intergenic | 40.0% |
| ! | AGATGCAAAGCCTTCTGAAA+TGG | - | Chr1:87245089-87245108 | MsG0180005115.01.T01:CDS | 40.0% |
| ! | ATAGGACTCACAAGTTGAAG+GGG | + | Chr1:87245962-87245981 | None:intergenic | 40.0% |
| ! | CATAGGACTCACAAGTTGAA+GGG | + | Chr1:87245963-87245982 | None:intergenic | 40.0% |
| ! | CTTCCTTCCTGACTATTTCT+TGG | + | Chr1:87245023-87245042 | None:intergenic | 40.0% |
| ! | GCTAGCTTCTGTTGATTGTT+GGG | + | Chr1:87245186-87245205 | None:intergenic | 40.0% |
| ! | TACTACAACACTCTTTTGGG+TGG | - | Chr1:87245060-87245079 | MsG0180005115.01.T01:CDS | 40.0% |
| ! | TCTGCCATCCTTTTCCTTAT+TGG | + | Chr1:87245998-87246017 | None:intergenic | 40.0% |
| ! | TGAACTTGGTCAAGGACTTT+TGG | - | Chr1:87244797-87244816 | MsG0180005115.01.T01:intron | 40.0% |
| ! | TGCTAGCTTCTGTTGATTGT+TGG | + | Chr1:87245187-87245206 | None:intergenic | 40.0% |
| ! | TGTTTGCTTACGACTTTTGC+AGG | + | Chr1:87244850-87244869 | None:intergenic | 40.0% |
| !! | ACTACAACACTCTTTTGGGT+GGG | - | Chr1:87245061-87245080 | MsG0180005115.01.T01:CDS | 40.0% |
| !! | AGGTACTGGAGTTCTTAAGA+AGG | - | Chr1:87245351-87245370 | MsG0180005115.01.T01:intron | 40.0% |
| !! | CTGTTTCTGATGCACCTAAA+GGG | - | Chr1:87245678-87245697 | MsG0180005115.01.T01:CDS | 40.0% |
| AAGGAAGATGTCCTGCTACA+AGG | - | Chr1:87245036-87245055 | MsG0180005115.01.T01:CDS | 45.0% | |
| ACGTCCTCAGTGATGGTTAT+AGG | + | Chr1:87244961-87244980 | None:intergenic | 45.0% | |
| AGCCTTCTTCTTCTTCAGCT+TGG | + | Chr1:87245939-87245958 | None:intergenic | 45.0% | |
| AGCTATAACGTCCTCAGTGA+TGG | + | Chr1:87244968-87244987 | None:intergenic | 45.0% | |
| AGCTTGTAGGATGAATGCAG+AGG | - | Chr1:87244990-87245009 | MsG0180005115.01.T01:CDS | 45.0% | |
| AGGAAGCTGCTCTTGCTAAA+GGG | - | Chr1:87245615-87245634 | MsG0180005115.01.T01:CDS | 45.0% | |
| ATCAGTAGCTGAGTACGTCT+TGG | - | Chr1:87245571-87245590 | MsG0180005115.01.T01:CDS | 45.0% | |
| CCTTCAACTTGTGAGTCCTA+TGG | - | Chr1:87245961-87245980 | MsG0180005115.01.T01:CDS | 45.0% | |
| CTGAAAGGACTATCAGTAGC+AGG | - | Chr1:87245414-87245433 | MsG0180005115.01.T01:CDS | 45.0% | |
| CTGATGCACCTAAAGGGAAA+AGG | - | Chr1:87245684-87245703 | MsG0180005115.01.T01:CDS | 45.0% | |
| CTTCTTCTTCAGCTTGGGAT+CGG | + | Chr1:87245933-87245952 | None:intergenic | 45.0% | |
| GCCTTCTTCTTCTTCAGCTT+GGG | + | Chr1:87245938-87245957 | None:intergenic | 45.0% | |
| GCTTGTAGGATGAATGCAGA+GGG | - | Chr1:87244991-87245010 | MsG0180005115.01.T01:CDS | 45.0% | |
| GGACTTTCCTCCCATCTTTA+AGG | - | Chr1:87245523-87245542 | MsG0180005115.01.T01:CDS | 45.0% | |
| GGAGATTCACAACAGGATGT+TGG | - | Chr1:87245110-87245129 | MsG0180005115.01.T01:CDS | 45.0% | |
| GGAGGAAGCTCTTGAAGAAA+TGG | - | Chr1:87245895-87245914 | MsG0180005115.01.T01:CDS | 45.0% | |
| TCCCAAGCTGAAGAAGAAGA+AGG | - | Chr1:87245934-87245953 | MsG0180005115.01.T01:CDS | 45.0% | |
| TCGAAGTCTCTACTGCTGAA+AGG | - | Chr1:87245399-87245418 | MsG0180005115.01.T01:CDS | 45.0% | |
| TCTGATGCTGCTCCTACTAA+AGG | - | Chr1:87245725-87245744 | MsG0180005115.01.T01:CDS | 45.0% | |
| TGCTAAAGGGAAAGGCAAGA+AGG | - | Chr1:87245628-87245647 | MsG0180005115.01.T01:CDS | 45.0% | |
| TGCTTCTTTCAAAGAGCAGG+AGG | - | Chr1:87245150-87245169 | MsG0180005115.01.T01:CDS | 45.0% | |
| TTCTGACACAGCAACTGCTT+TGG | + | Chr1:87245654-87245673 | None:intergenic | 45.0% | |
| ! | CCATAGGACTCACAAGTTGA+AGG | + | Chr1:87245964-87245983 | None:intergenic | 45.0% |
| ! | CTGGCCTTCTTTCCTTTAGT+AGG | + | Chr1:87245740-87245759 | None:intergenic | 45.0% |
| ! | GCTTCTGTTGATTGTTGGGT+TGG | + | Chr1:87245182-87245201 | None:intergenic | 45.0% |
| !! | GCTGTTTCTGATGCACCTAA+AGG | - | Chr1:87245677-87245696 | MsG0180005115.01.T01:CDS | 45.0% |
| AGTAGCTGAGTACGTCTTGG+AGG | - | Chr1:87245574-87245593 | MsG0180005115.01.T01:CDS | 50.0% | |
| AGTTCAAGTAGAGTCACCGG+TGG | - | Chr1:87244675-87244694 | MsG0180005115.01.T01:CDS | 50.0% | |
| GAGGAAGCTGCTCTTGCTAA+AGG | - | Chr1:87245614-87245633 | MsG0180005115.01.T01:CDS | 50.0% | |
| GCTGCTCTTGCTAAAGGGAA+AGG | - | Chr1:87245620-87245639 | MsG0180005115.01.T01:CDS | 50.0% | |
| ! | GTTCTGGCCCTTTTCCCTTT+AGG | + | Chr1:87245695-87245714 | None:intergenic | 50.0% |
| AATCACCCAAGAGCAGCTGG+AGG | - | Chr1:87245877-87245896 | MsG0180005115.01.T01:CDS | 55.0% | |
| ACGTCTTGGAGGAAGATGCG+AGG | - | Chr1:87245585-87245604 | MsG0180005115.01.T01:CDS | 55.0% | |
| AGCTTCCTCCAGCTGCTCTT+GGG | + | Chr1:87245885-87245904 | None:intergenic | 55.0% | |
| GGTAATCACCCAAGAGCAGC+TGG | - | Chr1:87245874-87245893 | MsG0180005115.01.T01:CDS | 55.0% | |
| GAGCTTCCTCCAGCTGCTCT+TGG | + | Chr1:87245886-87245905 | None:intergenic | 60.0% | |
| GGAAGATGCGAGGTCTCAGG+AGG | - | Chr1:87245595-87245614 | MsG0180005115.01.T01:CDS | 60.0% | |
| GGAGGAAGATGCGAGGTCTC+AGG | - | Chr1:87245592-87245611 | MsG0180005115.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 87244562 | 87246048 | 87244562 | ID=MsG0180005115.01;Name=MsG0180005115.01 |
| Chr1 | mRNA | 87244562 | 87246048 | 87244562 | ID=MsG0180005115.01.T01;Parent=MsG0180005115.01;Name=MsG0180005115.01.T01;_AED=0.49;_eAED=1.00;_QI=0|0|0|0.66|0|0|3|0|428 |
| Chr1 | exon | 87245359 | 87246048 | 87245359 | ID=MsG0180005115.01.T01:exon:47595;Parent=MsG0180005115.01.T01 |
| Chr1 | exon | 87244820 | 87245257 | 87244820 | ID=MsG0180005115.01.T01:exon:47594;Parent=MsG0180005115.01.T01 |
| Chr1 | exon | 87244562 | 87244717 | 87244562 | ID=MsG0180005115.01.T01:exon:47593;Parent=MsG0180005115.01.T01 |
| Chr1 | CDS | 87245359 | 87246048 | 87245359 | ID=MsG0180005115.01.T01:cds;Parent=MsG0180005115.01.T01 |
| Chr1 | CDS | 87244820 | 87245257 | 87244820 | ID=MsG0180005115.01.T01:cds;Parent=MsG0180005115.01.T01 |
| Chr1 | CDS | 87244562 | 87244717 | 87244562 | ID=MsG0180005115.01.T01:cds;Parent=MsG0180005115.01.T01 |
| Gene Sequence |
| Protein sequence |
