AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005209.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005209.01.T01 MTR_4g059390 83.803 284 46 0 1 284 1 284 1.55e-177 491
MsG0180005209.01.T01 MTR_7g101190 81.185 287 54 0 1 287 1 287 9.30e-173 479
MsG0180005209.01.T01 MTR_2g094270 77.972 286 61 2 1 284 1 286 1.16e-166 463
MsG0180005209.01.T01 MTR_3g118010 79.705 271 49 1 16 286 14 278 9.34e-155 433
MsG0180005209.01.T01 MTR_1g095070 100.000 199 0 0 89 287 23 221 1.29e-143 402
MsG0180005209.01.T01 MTR_2g094270 77.600 250 54 2 1 248 1 250 3.03e-142 401
MsG0180005209.01.T01 MTR_4g415300 72.374 257 65 1 16 272 33 283 1.95e-136 387
MsG0180005209.01.T01 MTR_8g098375 71.923 260 66 2 14 272 27 280 1.23e-135 385
MsG0180005209.01.T01 MTR_5g082070 71.910 267 68 3 7 272 23 283 3.66e-135 384
MsG0180005209.01.T01 MTR_5g010150 70.943 265 70 2 14 277 27 285 1.46e-134 382
MsG0180005209.01.T01 MTR_3g070210 69.373 271 76 2 3 272 19 283 3.94e-134 381
MsG0180005209.01.T01 MTR_4g059390 82.673 202 35 0 1 202 1 202 8.23e-122 347
MsG0180005209.01.T01 MTR_3g070210 68.400 250 72 2 3 251 19 262 5.09e-119 342
MsG0180005209.01.T01 MTR_1g095070 100.000 160 0 0 89 248 23 182 1.26e-113 325
MsG0180005209.01.T01 MTR_8g098375 64.904 208 64 3 15 219 28 229 3.52e-89 265
MsG0180005209.01.T01 MTR_4g415300 68.984 187 52 1 16 202 33 213 1.04e-87 261
MsG0180005209.01.T01 MTR_3g070210 65.672 201 62 2 3 202 19 213 4.22e-87 259
MsG0180005209.01.T01 MTR_5g010150 68.783 189 52 2 15 202 28 210 3.91e-86 257
MsG0180005209.01.T01 MTR_2g101370 37.553 237 124 6 39 270 20 237 4.57e-35 127
MsG0180005209.01.T01 MTR_1g077540 36.402 239 124 7 39 270 21 238 6.68e-35 127
MsG0180005209.01.T01 MTR_1g115405 38.525 244 134 7 30 272 12 240 2.26e-33 122
MsG0180005209.01.T01 MTR_8g013680 37.083 240 113 6 39 266 19 232 1.51e-32 120
MsG0180005209.01.T01 MTR_7g103030 34.711 242 141 5 30 270 12 237 7.87e-32 119
MsG0180005209.01.T01 MTR_4g063090 37.344 241 126 7 44 278 26 247 1.80e-31 117
MsG0180005209.01.T01 MTR_1g006490 35.600 250 129 9 30 271 10 235 5.08e-31 116
MsG0180005209.01.T01 MTR_6g069040 37.179 234 129 6 39 270 21 238 1.33e-30 115
MsG0180005209.01.T01 MTR_5g012810 37.118 229 127 5 39 266 19 231 6.20e-30 113
MsG0180005209.01.T01 MTR_1g006590 34.263 251 130 9 30 271 10 234 1.14e-29 113
MsG0180005209.01.T01 MTR_7g023350 37.339 233 130 6 39 270 21 238 4.93e-29 111
MsG0180005209.01.T01 MTR_8g087710 27.536 276 165 7 1 269 1 248 4.36e-20 87.8
MsG0180005209.01.T01 MTR_2g017660 29.487 234 138 6 39 269 39 248 4.92e-20 87.8
MsG0180005209.01.T01 MTR_5g079570 29.694 229 143 5 41 269 38 248 1.91e-18 83.2
MsG0180005209.01.T01 MTR_2g060360 31.890 254 131 9 30 270 11 235 2.49e-18 82.8
MsG0180005209.01.T01 MTR_5g063930 29.897 194 123 4 78 269 65 247 2.82e-18 82.8
MsG0180005209.01.T01 MTR_3g008920 30.846 201 119 5 76 272 53 237 3.31e-18 82.4
MsG0180005209.01.T01 MTR_4g084880 27.234 235 144 5 39 269 35 246 1.08e-17 81.3
MsG0180005209.01.T01 MTR_2g017620 27.660 235 145 6 37 269 22 233 9.15e-17 78.6
MsG0180005209.01.T01 MTR_2g017620 27.660 235 145 6 37 269 36 247 1.08e-16 78.6
MsG0180005209.01.T01 MTR_4g075570 31.694 183 109 8 92 261 95 274 2.20e-16 78.2
MsG0180005209.01.T01 MTR_8g087720 25.969 258 160 6 15 269 18 247 3.08e-16 77.0
MsG0180005209.01.T01 MTR_2g017590 27.542 236 144 6 37 269 34 245 5.21e-16 76.6
MsG0180005209.01.T01 MTR_4g075590 25.000 272 177 8 4 261 2 260 2.21e-15 75.5
MsG0180005209.01.T01 MTR_2g017610 30.208 192 114 5 82 269 72 247 9.16e-15 73.2
MsG0180005209.01.T01 MTR_2g017570 28.796 191 118 4 82 269 72 247 1.74e-14 72.4
MsG0180005209.01.T01 MTR_2g104940 28.111 217 134 6 43 259 84 278 3.87e-14 71.6
MsG0180005209.01.T01 MTR_2g017620 28.889 180 112 4 92 269 1 166 7.88e-14 68.9
MsG0180005209.01.T01 MTR_7g010650 26.693 251 154 6 37 283 35 259 1.27e-13 69.7
MsG0180005209.01.T01 MTR_4g006730 25.185 270 161 8 21 282 68 304 2.46e-13 69.3
MsG0180005209.01.T01 MTR_1g070385 25.105 239 147 6 36 269 59 270 7.68e-12 65.9
MsG0180005209.01.T01 MTR_4g006730 26.540 211 134 5 80 282 20 217 4.33e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005209.01.T01 AT2G37170 83.275 287 46 1 1 287 44 328 1.76e-178 495
MsG0180005209.01.T01 AT2G37170 83.275 287 46 1 1 287 1 285 9.19e-178 491
MsG0180005209.01.T01 AT3G53420 82.230 287 51 0 1 287 1 287 7.26e-176 487
MsG0180005209.01.T01 AT3G53420 82.230 287 51 0 1 287 1 287 7.26e-176 487
MsG0180005209.01.T01 AT2G37180 82.230 287 49 1 1 287 1 285 8.78e-175 484
MsG0180005209.01.T01 AT3G54820 82.230 287 50 1 1 287 1 286 5.20e-174 482
MsG0180005209.01.T01 AT2G39010 78.521 284 60 1 1 284 1 283 1.71e-167 466
MsG0180005209.01.T01 AT5G60660 79.859 283 57 0 1 283 1 283 2.28e-167 466
MsG0180005209.01.T01 AT2G16850 79.715 281 50 2 6 286 4 277 2.12e-159 445
MsG0180005209.01.T01 AT4G35100 77.305 282 57 2 6 286 4 279 1.02e-155 436
MsG0180005209.01.T01 AT4G35100 77.305 282 57 2 6 286 4 279 1.02e-155 436
MsG0180005209.01.T01 AT4G00430 74.131 259 61 1 14 272 28 280 4.96e-140 396
MsG0180005209.01.T01 AT2G45960 72.587 259 65 1 14 272 27 279 2.34e-136 387
MsG0180005209.01.T01 AT4G23400 74.517 259 60 1 14 272 28 280 1.65e-131 375
MsG0180005209.01.T01 AT1G01620 73.745 259 62 1 14 272 27 279 3.00e-131 374
MsG0180005209.01.T01 AT3G61430 72.587 259 65 1 14 272 27 279 6.98e-129 368
MsG0180005209.01.T01 AT3G61430 72.587 259 65 1 14 272 27 279 6.98e-129 368
MsG0180005209.01.T01 AT2G45960 72.766 235 58 1 14 248 27 255 1.10e-121 349
MsG0180005209.01.T01 AT2G45960 72.766 235 58 1 14 248 27 255 1.02e-120 348
MsG0180005209.01.T01 AT1G01620 77.073 205 47 0 68 272 3 207 1.29e-113 327
MsG0180005209.01.T01 AT2G39010 76.733 202 46 1 1 202 1 201 3.47e-112 323
MsG0180005209.01.T01 AT4G00430 70.466 193 51 1 14 206 28 214 8.16e-92 271
MsG0180005209.01.T01 AT3G26520 38.618 246 127 8 30 270 13 239 3.46e-35 127
MsG0180005209.01.T01 AT3G16240 39.574 235 114 7 39 266 19 232 2.88e-33 122
MsG0180005209.01.T01 AT1G73190 36.842 247 137 7 29 270 14 246 6.04e-33 122
MsG0180005209.01.T01 AT2G36830 37.860 243 127 9 30 267 12 235 9.03e-33 121
MsG0180005209.01.T01 AT5G47450 38.559 236 121 7 36 266 16 232 1.83e-32 120
MsG0180005209.01.T01 AT1G17810 35.743 249 137 7 29 270 14 246 5.37e-32 119
MsG0180005209.01.T01 AT4G01470 35.918 245 133 6 31 270 13 238 2.96e-31 117
MsG0180005209.01.T01 AT2G25810 34.298 242 139 6 30 270 10 232 2.13e-29 112
MsG0180005209.01.T01 AT4G17340 35.573 253 132 8 39 286 19 245 3.01e-28 109
MsG0180005209.01.T01 AT3G47440 33.191 235 136 7 39 270 23 239 7.34e-25 100
MsG0180005209.01.T01 AT4G19030 28.016 257 165 5 16 269 32 271 1.22e-19 87.0
MsG0180005209.01.T01 AT5G37820 28.326 233 142 7 39 269 43 252 6.29e-16 76.6
MsG0180005209.01.T01 AT5G37820 28.326 233 142 7 39 269 79 288 7.30e-16 76.6
MsG0180005209.01.T01 AT4G18910 26.800 250 161 6 25 269 36 268 1.16e-14 73.2
MsG0180005209.01.T01 AT1G80760 27.632 228 143 6 36 263 77 282 1.32e-14 73.2
MsG0180005209.01.T01 AT2G34390 27.007 274 163 8 3 269 20 263 1.32e-14 72.8
MsG0180005209.01.T01 AT1G31885 27.234 235 143 6 32 259 36 249 1.72e-13 70.1
MsG0180005209.01.T01 AT2G34390 30.151 199 119 6 78 269 36 221 4.66e-13 67.8
MsG0180005209.01.T01 AT1G31885 28.571 189 116 4 78 259 19 195 1.28e-12 67.0
MsG0180005209.01.T01 AT5G37810 26.724 232 147 6 39 269 43 252 2.13e-12 66.6
MsG0180005209.01.T01 AT3G06100 29.876 241 128 11 39 269 46 255 2.35e-11 63.2

Find 107 sgRNAs with CRISPR-Local

Find 444 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTCATATATTTATATTTA+TGG 0.035830 1:+88578057 MsG0180005209.01.T01:three_prime_UTR
TACTGCACTGCTGGAATTTC+AGG 0.116467 1:+88572002 MsG0180005209.01.T01:CDS
CTTGGTATTGCTTGGGCTTT+TGG 0.167039 1:+88571957 MsG0180005209.01.T01:CDS
CTACTGACAATATATTTAAA+TGG 0.205382 1:+88578166 MsG0180005209.01.T01:three_prime_UTR
CATTGGCTTTGCTGTATTCA+TGG 0.216375 1:+88574319 MsG0180005209.01.T01:CDS
TGTGGATAAGTGTAGATTAA+AGG 0.250130 1:+88577952 MsG0180005209.01.T01:intron
TGAGAGGAGAGGGGTATATA+TGG 0.263360 1:-88571594 None:intergenic
TGCTGTATTCATGGTTCATT+TGG 0.265351 1:+88574328 MsG0180005209.01.T01:CDS
TGTGGCGGTGTTGGAATTCT+TGG 0.299713 1:+88571939 MsG0180005209.01.T01:CDS
CTTCAACGTCCTTTGCCATT+TGG 0.306760 1:-88571713 None:intergenic
ACATGGTGGCTCAGTGTTTA+GGG 0.314737 1:+88572478 MsG0180005209.01.T01:CDS
AGCAATAAGAGCCCTATAAA+AGG 0.318535 1:-88571823 None:intergenic
TTTGGGTTGGACCATTCATT+GGG 0.321050 1:+88574997 MsG0180005209.01.T01:CDS
TACATGGTGGCTCAGTGTTT+AGG 0.322720 1:+88572477 MsG0180005209.01.T01:CDS
GATTGTTGGTACCTTTGTTT+TGG 0.338987 1:+88572617 MsG0180005209.01.T01:CDS
GTGGATAAGTGTAGATTAAA+GGG 0.340999 1:+88577953 MsG0180005209.01.T01:intron
ATTAACCCAGCAGTGACATT+TGG 0.351379 1:+88572411 MsG0180005209.01.T01:CDS
CAGTGTTTAGGGGCTATTGC+TGG 0.353377 1:+88572489 MsG0180005209.01.T01:CDS
GTCCTTGTTTACTGCACTGC+TGG 0.353886 1:+88571993 MsG0180005209.01.T01:CDS
CACCAGCTTTAACATCAGTT+TGG 0.356493 1:-88571908 None:intergenic
TTGGAATTCTTGGTATTGCT+TGG 0.357512 1:+88571949 MsG0180005209.01.T01:CDS
TGCTGGAGTTGGGTTGGTTA+AGG 0.360281 1:+88572506 MsG0180005209.01.T01:CDS
AGTGCTTACTTTGATAGATA+TGG 0.363517 1:+88572537 MsG0180005209.01.T01:CDS
TTAGGGGCTATTGCTGGAGT+TGG 0.368147 1:+88572495 MsG0180005209.01.T01:CDS
ATACAGAGGAAAGTGTAAAA+AGG 0.376218 1:-88577980 None:intergenic
TGTGTGGTCAGTGGATCTTT+TGG 0.380699 1:+88574979 MsG0180005209.01.T01:intron
ACTTCCATTCTTGTTTCAAA+AGG 0.384648 1:+88571681 MsG0180005209.01.T01:five_prime_UTR
GAATCTCTAGCACTTCTCTT+AGG 0.389590 1:-88572666 None:intergenic
AAAGGAAGAGACTTTGTTGA+TGG 0.390872 1:-88571634 None:intergenic
TGGAATTCTTGGTATTGCTT+GGG 0.394756 1:+88571950 MsG0180005209.01.T01:CDS
GGCTATTGCTGGAGTTGGGT+TGG 0.397346 1:+88572500 MsG0180005209.01.T01:CDS
TTAAAGCTCTCGGATCATTC+AGG 0.399692 1:+88575069 MsG0180005209.01.T01:CDS
TACAGTACTGGTGTTGGATT+AGG 0.404629 1:+88572588 MsG0180005209.01.T01:CDS
TAAGATGAATTGATGGTAGA+AGG 0.409224 1:-88575033 None:intergenic
TTAACCCAGCAGTGACATTT+GGG 0.413578 1:+88572412 MsG0180005209.01.T01:CDS
ATTGTTCTTCATCTTCATCA+TGG 0.416251 1:+88575114 MsG0180005209.01.T01:three_prime_UTR
TAGGGGCTATTGCTGGAGTT+GGG 0.422243 1:+88572496 MsG0180005209.01.T01:CDS
TGGAATAGAGTGAGAGGAGA+GGG 0.428024 1:-88571604 None:intergenic
CTGCTCTTAAGATGAATTGA+TGG 0.428710 1:-88575040 None:intergenic
ATGCTGAAGAACTCACAAAA+TGG 0.434066 1:+88571799 MsG0180005209.01.T01:CDS
CTTCCATTCTTGTTTCAAAA+GGG 0.444334 1:+88571682 MsG0180005209.01.T01:five_prime_UTR
CTCCACGATGGTTACAGTAC+TGG 0.445838 1:+88572576 MsG0180005209.01.T01:CDS
CTCAATTGTCTTCAAGATTG+TGG 0.453800 1:+88575206 MsG0180005209.01.T01:three_prime_UTR
AATAGCCCAAATGTCACTGC+TGG 0.456045 1:-88572417 None:intergenic
ATCAATCCTGCTAGAAGTCT+TGG 0.462477 1:+88574377 MsG0180005209.01.T01:CDS
GGTGATGCTTGTGGCGGTGT+TGG 0.462846 1:+88571930 MsG0180005209.01.T01:CDS
AACGTCCTTTGCCATTTGGA+TGG 0.469367 1:-88571709 None:intergenic
GGCACTCACATGGTCATCCC+AGG 0.474099 1:-88574429 None:intergenic
AAAGAAGATAATTGAAGAGA+TGG 0.482123 1:+88575146 MsG0180005209.01.T01:three_prime_UTR
TTGATGCCAGTGCCAGTGAC+TGG 0.491396 1:-88574359 None:intergenic
GGATTAGGTGCTGAGATTGT+TGG 0.494655 1:+88572603 MsG0180005209.01.T01:CDS
AGAAGACAAAGAACAGAGAA+AGG 0.503367 1:-88571652 None:intergenic
TGCTAGAGATTCACATGTGC+CGG 0.507488 1:+88572677 MsG0180005209.01.T01:CDS
ACCATCCCAGTCACTGGCAC+TGG 0.513628 1:+88574353 MsG0180005209.01.T01:CDS
TCTACAACAAAGATAAGCCC+TGG 0.515612 1:+88574411 MsG0180005209.01.T01:CDS
TCAATGAGTGGTGCTGGTGG+AGG 0.515832 1:-88571777 None:intergenic
AGGAAGAGACTTTGTTGATG+GGG 0.518165 1:-88571632 None:intergenic
GCAATGGCTGCCCCAATGAA+TGG 0.519647 1:-88575008 None:intergenic
TCAGCATCAATGAGTGGTGC+TGG 0.521662 1:-88571783 None:intergenic
ATCCAAACTGATGTTAAAGC+TGG 0.525313 1:+88571906 MsG0180005209.01.T01:CDS
CATCAATTCATCTTAAGAGC+AGG 0.526225 1:+88575041 MsG0180005209.01.T01:CDS
AAGGAAGAGACTTTGTTGAT+GGG 0.530284 1:-88571633 None:intergenic
TTGGCAACCATCCCAGTCAC+TGG 0.536043 1:+88574347 MsG0180005209.01.T01:CDS
AAAAGGGTAATCCATCCAAA+TGG 0.537852 1:+88571698 MsG0180005209.01.T01:exon
AGGATCAGTAGCAGAGAAAA+CGG 0.540023 1:-88572646 None:intergenic
ACTTTGTTGATGGGGAAGTG+TGG 0.541378 1:-88571624 None:intergenic
GCAGGTGCTGTTAAAGCTCT+CGG 0.543864 1:+88575059 MsG0180005209.01.T01:CDS
GAACAATGCACTCAAACAGT+AGG 0.546368 1:-88575098 None:intergenic
GATCAGAGCAATTATGTACA+TGG 0.548140 1:+88572461 MsG0180005209.01.T01:CDS
ATGAATACAGCAAAGCCAAT+GGG 0.548910 1:-88574317 None:intergenic
TTCCAGCAGTGCAGTAAACA+AGG 0.555662 1:-88571995 None:intergenic
AATGAAATCATGAGAATGAG+AGG 0.559195 1:-88578109 None:intergenic
GTGGTGCTGGTGGAGGGTCG+TGG 0.559227 1:-88571770 None:intergenic
TACTTTGATAGATATGGTGG+TGG 0.560516 1:+88572543 MsG0180005209.01.T01:CDS
ACAGCAAAGCCAATGGGAAG+TGG 0.562056 1:-88574311 None:intergenic
GGAATAGAGTGAGAGGAGAG+GGG 0.564172 1:-88571603 None:intergenic
GAAGTGTGGAATAGAGTGAG+AGG 0.564320 1:-88571610 None:intergenic
CAGTCAAAACAGTAACGTAA+AGG 0.566620 1:-88571869 None:intergenic
CATGGTGGCTCAGTGTTTAG+GGG 0.567199 1:+88572479 MsG0180005209.01.T01:CDS
TGGATAAGTGTAGATTAAAG+GGG 0.574109 1:+88577954 MsG0180005209.01.T01:intron
GTGGAATAGAGTGAGAGGAG+AGG 0.576913 1:-88571605 None:intergenic
CATGAATACAGCAAAGCCAA+TGG 0.582174 1:-88574318 None:intergenic
TGATGCCAGTGCCAGTGACT+GGG 0.591533 1:-88574358 None:intergenic
CAATGAGTGGTGCTGGTGGA+GGG 0.591576 1:-88571776 None:intergenic
AACAATGCACTCAAACAGTA+GGG 0.595283 1:-88575097 None:intergenic
ATAGCCCAAATGTCACTGCT+GGG 0.598118 1:-88572416 None:intergenic
GATGGTTACAGTACTGGTGT+TGG 0.598436 1:+88572582 MsG0180005209.01.T01:CDS
GCAGAACCAAGACTTCTAGC+AGG 0.610357 1:-88574383 None:intergenic
CTACAACAAAGATAAGCCCT+GGG 0.614303 1:+88574412 MsG0180005209.01.T01:CDS
GGATAAGTGTAGATTAAAGG+GGG 0.621857 1:+88577955 MsG0180005209.01.T01:intron
GCATCAATGAGTGGTGCTGG+TGG 0.623719 1:-88571780 None:intergenic
GCCAGTGCCAGTGACTGGGA+TGG 0.626932 1:-88574354 None:intergenic
GTAATCCATCCAAATGGCAA+AGG 0.627109 1:+88571704 MsG0180005209.01.T01:exon
TTGGGTTGGACCATTCATTG+GGG 0.640946 1:+88574998 MsG0180005209.01.T01:CDS
GCACTCACATGGTCATCCCA+GGG 0.643963 1:-88574428 None:intergenic
CAAACTGATGTTAAAGCTGG+TGG 0.644812 1:+88571909 MsG0180005209.01.T01:CDS
TTGATGGTAGAAGGCTGCAA+TGG 0.646870 1:-88575024 None:intergenic
GACGTTGAAGTTGCTGAACG+TGG 0.653894 1:+88571726 MsG0180005209.01.T01:CDS
AAAGCTGGTGGTGATGCTTG+TGG 0.656429 1:+88571921 MsG0180005209.01.T01:CDS
AACGGTGTAAACCAAAACAA+AGG 0.663291 1:-88572628 None:intergenic
GCTTACTTTGATAGATATGG+TGG 0.668285 1:+88572540 MsG0180005209.01.T01:CDS
ATATAAATATATGAGTACAA+AGG 0.675882 1:-88578051 None:intergenic
CAGAGCAATTATGTACATGG+TGG 0.699949 1:+88572464 MsG0180005209.01.T01:CDS
CACCAGTACTGTAACCATCG+TGG 0.705995 1:-88572578 None:intergenic
AGTTCTTCAGCATCAATGAG+TGG 0.710311 1:-88571789 None:intergenic
GCTGGTGGTGATGCTTGTGG+CGG 0.720641 1:+88571924 MsG0180005209.01.T01:CDS
ACACGCTAAAGAGAATACAG+AGG 0.744952 1:-88577994 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAAGAATAAAATCAT+GGG + Chr1:88574141-88574160 MsG0180005209.01.T01:intron 10.0%
!! TACTCATATATTTATATTTA+TGG + Chr1:88575332-88575351 MsG0180005209.01.T01:intron 10.0%
!!! ATTATTTTAAACAAAAAAAG+TGG - Chr1:88575874-88575893 None:intergenic 10.0%
!!! TTTTTTGCTTATTTTTTAAA+GGG + Chr1:88572312-88572331 MsG0180005209.01.T01:intron 10.0%
!!! TTTTTTTGCTTATTTTTTAA+AGG + Chr1:88572311-88572330 MsG0180005209.01.T01:intron 10.0%
!! AAATAAAAATGAAAACATAC+CGG - Chr1:88572699-88572718 None:intergenic 15.0%
!! AGTAATTACCAAAAATAATA+AGG + Chr1:88573437-88573456 MsG0180005209.01.T01:intron 15.0%
!! ATATAAATATATGAGTACAA+AGG - Chr1:88575329-88575348 None:intergenic 15.0%
!! ATTATTTGTATTCATATGTT+TGG + Chr1:88574231-88574250 MsG0180005209.01.T01:intron 15.0%
!! CTAAATAAAGAATAAAATCA+TGG + Chr1:88574140-88574159 MsG0180005209.01.T01:intron 15.0%
!! GTAATTACCAAAAATAATAA+GGG + Chr1:88573438-88573457 MsG0180005209.01.T01:intron 15.0%
!! TAAGAATAAGAAATAAAAAG+TGG - Chr1:88576249-88576268 None:intergenic 15.0%
!! TAATAGTATGTCATATTATA+GGG + Chr1:88576948-88576967 MsG0180005209.01.T01:intron 15.0%
!! TGTAAAGTATGAAAATTTAT+GGG + Chr1:88572359-88572378 MsG0180005209.01.T01:intron 15.0%
!! TTCAATACAACTAATTTATA+TGG - Chr1:88574883-88574902 None:intergenic 15.0%
!! TTGTAAAGTATGAAAATTTA+TGG + Chr1:88572358-88572377 MsG0180005209.01.T01:intron 15.0%
!!! AGAAATAAATTTTGTTTTCA+AGG - Chr1:88573949-88573968 None:intergenic 15.0%
!!! GATTTTATTCTTTATTTAGA+AGG - Chr1:88574139-88574158 None:intergenic 15.0%
!!! TTTTAATAATAGTACCTAAT+AGG - Chr1:88576005-88576024 None:intergenic 15.0%
!! AATAAGAAATAAAAAGTGGT+GGG - Chr1:88576245-88576264 None:intergenic 20.0%
!! AATAATTCTACTAATCACAA+AGG - Chr1:88575530-88575549 None:intergenic 20.0%
!! ACTACTGACATATATTTAAA+TGG + Chr1:88575438-88575457 MsG0180005209.01.T01:intron 20.0%
!! ATCATTTCATTTGGAAATTA+TGG - Chr1:88573794-88573813 None:intergenic 20.0%
!! ATTAACAACATCATTTCATT+TGG - Chr1:88573803-88573822 None:intergenic 20.0%
!! CAATATTATCAAACATCAAA+AGG - Chr1:88575585-88575604 None:intergenic 20.0%
!! CATTGAAAACATAATGTATT+TGG - Chr1:88573631-88573650 None:intergenic 20.0%
!! CTAAAAAAAGATAAGGAATA+TGG + Chr1:88574928-88574947 MsG0180005209.01.T01:intron 20.0%
!! CTAATAGTATGTCATATTAT+AGG + Chr1:88576947-88576966 MsG0180005209.01.T01:intron 20.0%
!! CTACTGACAATATATTTAAA+TGG + Chr1:88578166-88578185 MsG0180005209.01.T01:three_prime_UTR 20.0%
!! TAGAAGTTAAAATATGGAAA+AGG - Chr1:88574453-88574472 None:intergenic 20.0%
!! TATATATGACTAAATGTGTT+AGG + Chr1:88572855-88572874 MsG0180005209.01.T01:intron 20.0%
!! TTATATTAACAAGTTTGAAC+TGG + Chr1:88573287-88573306 MsG0180005209.01.T01:intron 20.0%
!! TTGTCAACTAAAAAAAGATA+AGG + Chr1:88574921-88574940 MsG0180005209.01.T01:intron 20.0%
!! TTTAAACAAACAATTTCAAG+TGG + Chr1:88577825-88577844 MsG0180005209.01.T01:intron 20.0%
!!! AAAAATAAAGTATTTGCAAG+TGG + Chr1:88572878-88572897 MsG0180005209.01.T01:intron 20.0%
!!! AACATTACCCTTATTATTTT+TGG - Chr1:88573448-88573467 None:intergenic 20.0%
!!! ACTTGGTTTTTTAATGTTAT+TGG + Chr1:88575930-88575949 MsG0180005209.01.T01:intron 20.0%
!!! AGTTCATACTTTACTATTTT+TGG + Chr1:88572257-88572276 MsG0180005209.01.T01:intron 20.0%
!!! ATAGGCTTTAGATATATTTT+TGG + Chr1:88574814-88574833 MsG0180005209.01.T01:intron 20.0%
!!! ATGTTGAAAATACTGATTAA+AGG + Chr1:88572827-88572846 MsG0180005209.01.T01:intron 20.0%
!!! TGTTGAAAATACTGATTAAA+GGG + Chr1:88572828-88572847 MsG0180005209.01.T01:intron 20.0%
!!! TTATTCTTTATTTAGAAGGA+AGG - Chr1:88574135-88574154 None:intergenic 20.0%
!!! TTTTCAATTGCAATTTAACT+TGG + Chr1:88575913-88575932 MsG0180005209.01.T01:intron 20.0%
! AAAGAAGATAATTGAAGAGA+TGG + Chr1:88575146-88575165 MsG0180005209.01.T01:three_prime_UTR 25.0%
! AAAGGGTTACTATTATTTGA+AGG + Chr1:88572329-88572348 MsG0180005209.01.T01:intron 25.0%
! ACATAAAGTGACAAAACAAA+TGG - Chr1:88574201-88574220 None:intergenic 25.0%
! ATAAAGTGACAAAACAAATG+GGG - Chr1:88574199-88574218 None:intergenic 25.0%
! ATAAGTATTTGCAAAACAAC+AGG - Chr1:88576862-88576881 None:intergenic 25.0%
! ATTAGTTGTATTGAATGAAC+TGG + Chr1:88574888-88574907 MsG0180005209.01.T01:intron 25.0%
! CATAAAGTGACAAAACAAAT+GGG - Chr1:88574200-88574219 None:intergenic 25.0%
! GAATAAGAAATAAAAAGTGG+TGG - Chr1:88576246-88576265 None:intergenic 25.0%
! GATATGAATGCAATTTGAAA+AGG + Chr1:88577795-88577814 MsG0180005209.01.T01:intron 25.0%
! TACTTACAAAACACTATCAA+TGG - Chr1:88577763-88577782 None:intergenic 25.0%
! TATCTTAACACAAGCAATTA+TGG - Chr1:88574568-88574587 None:intergenic 25.0%
! TCAAAAAAAATTCTCCACAA+GGG - Chr1:88575799-88575818 None:intergenic 25.0%
! TGAAGTAAATGATCTCAAAT+TGG + Chr1:88573247-88573266 MsG0180005209.01.T01:intron 25.0%
! TTCATACTCTTAATTCTTGT+AGG + Chr1:88574857-88574876 MsG0180005209.01.T01:intron 25.0%
! TTTCTTTGGTAAAATTGAAC+TGG + Chr1:88574604-88574623 MsG0180005209.01.T01:intron 25.0%
!! AAAAAATATTTGGTTCCTCT+AGG - Chr1:88573203-88573222 None:intergenic 25.0%
!! AAAAATATTTGGTTCCTCTA+GGG - Chr1:88573202-88573221 None:intergenic 25.0%
!! ACTTTTATACCGATATTGTT+AGG - Chr1:88572082-88572101 None:intergenic 25.0%
!! ATATATCTAAAGCCTATGTT+TGG - Chr1:88574811-88574830 None:intergenic 25.0%
!! GATTTTCATCAATTCATGTT+TGG + Chr1:88574541-88574560 MsG0180005209.01.T01:intron 25.0%
!! TAGTGTTTTGTAAGTAGATA+TGG + Chr1:88577767-88577786 MsG0180005209.01.T01:intron 25.0%
!! TGATAAGTCAATATCAGTTT+TGG + Chr1:88574075-88574094 MsG0180005209.01.T01:intron 25.0%
!! TTTAAAACACACCAAAAACT+AGG - Chr1:88572964-88572983 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG + Chr1:88573666-88573685 MsG0180005209.01.T01:intron 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - Chr1:88573685-88573666 None:intergenic 25.0%
!!! AAAACTGATATTGACTTATC+AGG - Chr1:88574076-88574095 None:intergenic 25.0%
!!! AAATTTTTTCCCATTGTACA+TGG - Chr1:88576108-88576127 None:intergenic 25.0%
!!! AAGCATTGAGAAATTAATGA+TGG - Chr1:88573704-88573723 None:intergenic 25.0%
!!! AATGTTTTTTGTGAAGGTTT+TGG + Chr1:88574286-88574305 MsG0180005209.01.T01:intron 25.0%
!!! ATGGATAATGTTTTTTGTGA+AGG + Chr1:88574280-88574299 MsG0180005209.01.T01:intron 25.0%
!!! GGTTTTTTAATGTTATTGGT+TGG + Chr1:88575934-88575953 MsG0180005209.01.T01:intron 25.0%
!!! GTGTGTGTATGATTTTTTTT+AGG - Chr1:88573094-88573113 None:intergenic 25.0%
!!! GTTGTTTTGCAAATACTTAT+CGG + Chr1:88576862-88576881 MsG0180005209.01.T01:intron 25.0%
!!! TATTGACTTATCAGGAATAA+AGG - Chr1:88574068-88574087 None:intergenic 25.0%
!!! TTGTGGAGAATTTTTTTTGA+GGG + Chr1:88575799-88575818 MsG0180005209.01.T01:intron 25.0%
!!! TTGTTTTGCAAATACTTATC+GGG + Chr1:88576863-88576882 MsG0180005209.01.T01:intron 25.0%
AAACATTGCAATCGTCTATT+AGG + Chr1:88577553-88577572 MsG0180005209.01.T01:intron 30.0%
AAAGTCACGTTTATCCAATA+TGG + Chr1:88575613-88575632 MsG0180005209.01.T01:intron 30.0%
AACTGCTTCAAGAATAATTG+TGG + Chr1:88577112-88577131 MsG0180005209.01.T01:intron 30.0%
AATAAATCGGTGACCATATA+AGG + Chr1:88577686-88577705 MsG0180005209.01.T01:intron 30.0%
AATGAAATCATGAGAATGAG+AGG - Chr1:88575387-88575406 None:intergenic 30.0%
ACCAGCTAGAAGTTAAAATA+TGG - Chr1:88574459-88574478 None:intergenic 30.0%
AGTGCTTACTTTGATAGATA+TGG + Chr1:88572537-88572556 MsG0180005209.01.T01:CDS 30.0%
ATTGTTCTTCATCTTCATCA+TGG + Chr1:88575114-88575133 MsG0180005209.01.T01:three_prime_UTR 30.0%
CATTCAAGACTCAATGTATT+TGG + Chr1:88573593-88573612 MsG0180005209.01.T01:intron 30.0%
CCACTTTGATACAATATACT+GGG - Chr1:88575640-88575659 None:intergenic 30.0%
CTCAAAAAAAATTCTCCACA+AGG - Chr1:88575800-88575819 None:intergenic 30.0%
GATGAATACATCAAAATAGG+AGG - Chr1:88577361-88577380 None:intergenic 30.0%
GCTAGAAATCTAAGTTTCTT+TGG + Chr1:88574590-88574609 MsG0180005209.01.T01:intron 30.0%
GTCGATGAATACATCAAAAT+AGG - Chr1:88577364-88577383 None:intergenic 30.0%
GTGGATAAGTGTAGATTAAA+GGG + Chr1:88575225-88575244 MsG0180005209.01.T01:intron 30.0%
GTTATGGAAATCAATTGAAC+TGG + Chr1:88574682-88574701 MsG0180005209.01.T01:intron 30.0%
TAAAGTGACAAAACAAATGG+GGG - Chr1:88574198-88574217 None:intergenic 30.0%
TACACAATCATGATAAGTCA+TGG + Chr1:88573118-88573137 MsG0180005209.01.T01:intron 30.0%
TATGACATACTATTAGCTGA+TGG - Chr1:88576943-88576962 None:intergenic 30.0%
TCAACTTTGACGTCTTAAAT+GGG - Chr1:88576059-88576078 None:intergenic 30.0%
TCATTTGGAAATTATGGTGA+AGG - Chr1:88573788-88573807 None:intergenic 30.0%
TGAAATGTAAGAAACACTTC+AGG + Chr1:88575675-88575694 MsG0180005209.01.T01:intron 30.0%
TGGAAAAAATTGTCCTAAAG+CGG - Chr1:88577170-88577189 None:intergenic 30.0%
TGGATAAGTGTAGATTAAAG+GGG + Chr1:88575226-88575245 MsG0180005209.01.T01:intron 30.0%
TGGTCTATTTAGACATTTGT+TGG + Chr1:88575954-88575973 MsG0180005209.01.T01:intron 30.0%
TGTGGATAAGTGTAGATTAA+AGG + Chr1:88575224-88575243 MsG0180005209.01.T01:intron 30.0%
TTAAGACATCAATGCTTAAG+TGG + Chr1:88575845-88575864 MsG0180005209.01.T01:intron 30.0%
TTAAGAGAGAGAAAATGATG+TGG - Chr1:88576170-88576189 None:intergenic 30.0%
TTATACCGATATTGTTAGGT+CGG - Chr1:88572078-88572097 None:intergenic 30.0%
! AATACAGAGGAAAGTGTAAA+AGG - Chr1:88575255-88575274 None:intergenic 30.0%
! AATGCTTACTTGCATCTTTT+GGG + Chr1:88573717-88573736 MsG0180005209.01.T01:intron 30.0%
! ACTTCCATTCTTGTTTCAAA+AGG + Chr1:88571681-88571700 MsG0180005209.01.T01:five_prime_UTR 30.0%
! ATACAGAGGAAAGTGTAAAA+AGG - Chr1:88575254-88575273 None:intergenic 30.0%
! ATATTTTGTTCCTTTGTGTG+TGG + Chr1:88574963-88574982 MsG0180005209.01.T01:intron 30.0%
! CAAAAAATGTTTTCCTTCGA+AGG - Chr1:88577515-88577534 None:intergenic 30.0%
! CACAAAATGGTCCTTTTATA+GGG + Chr1:88571812-88571831 MsG0180005209.01.T01:CDS 30.0%
! CATAGATTGGAAGTATGATA+TGG + Chr1:88577850-88577869 MsG0180005209.01.T01:intron 30.0%
! CTTCCATTCTTGTTTCAAAA+GGG + Chr1:88571682-88571701 MsG0180005209.01.T01:five_prime_UTR 30.0%
! GTTTGAAATGAATCGATTGT+AGG + Chr1:88572381-88572400 MsG0180005209.01.T01:intron 30.0%
! TAACATGGAGTATTCTTTGA+AGG + Chr1:88577245-88577264 MsG0180005209.01.T01:intron 30.0%
! TAAGATGAATTGATGGTAGA+AGG - Chr1:88575036-88575055 None:intergenic 30.0%
! TATTCTTTGAAGGTCATCTT+GGG + Chr1:88577255-88577274 MsG0180005209.01.T01:intron 30.0%
! TCACAAAATGGTCCTTTTAT+AGG + Chr1:88571811-88571830 MsG0180005209.01.T01:CDS 30.0%
! TCTATTTAGACATTTGTTGG+AGG + Chr1:88575957-88575976 MsG0180005209.01.T01:intron 30.0%
! TTCAATTTTTACCACTCCAA+TGG + Chr1:88576201-88576220 MsG0180005209.01.T01:intron 30.0%
! TTTACGGACTAATTGAGTTA+GGG + Chr1:88572142-88572161 MsG0180005209.01.T01:intron 30.0%
!! AATATCGGTATAAAAGTGTC+CGG + Chr1:88572085-88572104 MsG0180005209.01.T01:intron 30.0%
!! CTAATTGATTTGACGAAAGT+TGG + Chr1:88576901-88576920 MsG0180005209.01.T01:intron 30.0%
!! CTGGCATTGAAATCAATTTT+AGG + Chr1:88574623-88574642 MsG0180005209.01.T01:intron 30.0%
!! TCATCTTCATCATGGTTTTA+TGG + Chr1:88575122-88575141 MsG0180005209.01.T01:three_prime_UTR 30.0%
!! TTGATGATGAACCTAAATCA+CGG + Chr1:88574718-88574737 MsG0180005209.01.T01:intron 30.0%
!!! CTTGTGGAGAATTTTTTTTG+AGG + Chr1:88575798-88575817 MsG0180005209.01.T01:intron 30.0%
!!! GTTACTGTTTTGACTGTTAT+TGG + Chr1:88571876-88571895 MsG0180005209.01.T01:CDS 30.0%
!!! GTTTGAACTGGTTTGTTTTT+TGG + Chr1:88573299-88573318 MsG0180005209.01.T01:intron 30.0%
!!! TCCATATTTTAACTTCTAGC+TGG + Chr1:88574455-88574474 MsG0180005209.01.T01:intron 30.0%
!!! TTACCCTTTTGAAACAAGAA+TGG - Chr1:88571688-88571707 None:intergenic 30.0%
!!! TTTTTACCCACTTTTTTGCT+TGG + Chr1:88573481-88573500 MsG0180005209.01.T01:intron 30.0%
AAAAAACTAGAGGAAGGTAG+TGG - Chr1:88577657-88577676 None:intergenic 35.0%
AAAACACACCAAAAACTAGG+AGG - Chr1:88572961-88572980 None:intergenic 35.0%
AAAAGGGTAATCCATCCAAA+TGG + Chr1:88571698-88571717 MsG0180005209.01.T01:exon 35.0%
AAAGAAGCCAAGCAAAAAAG+TGG - Chr1:88573491-88573510 None:intergenic 35.0%
AAAGGAAGAGACTTTGTTGA+TGG - Chr1:88571637-88571656 None:intergenic 35.0%
AAAGTGAGAAATATCCCTAG+AGG + Chr1:88573185-88573204 MsG0180005209.01.T01:intron 35.0%
AACAATGCACTCAAACAGTA+GGG - Chr1:88575100-88575119 None:intergenic 35.0%
AACGGTGTAAACCAAAACAA+AGG - Chr1:88572631-88572650 None:intergenic 35.0%
AACTCTCATACAAGGTATGA+TGG - Chr1:88573867-88573886 None:intergenic 35.0%
AAGAAGCCAAGCAAAAAAGT+GGG - Chr1:88573490-88573509 None:intergenic 35.0%
AAGCTCATGAGCATATGTTA+TGG + Chr1:88574666-88574685 MsG0180005209.01.T01:intron 35.0%
AAGGAAGAGACTTTGTTGAT+GGG - Chr1:88571636-88571655 None:intergenic 35.0%
ACAAAGAGATCTGAAGAGAA+AGG - Chr1:88572044-88572063 None:intergenic 35.0%
ACAATATACTGGGACCATAT+TGG - Chr1:88575630-88575649 None:intergenic 35.0%
ACTAATTGAGTTAGGGCTTA+CGG + Chr1:88572149-88572168 MsG0180005209.01.T01:intron 35.0%
ACTCTCATACAAGGTATGAT+GGG - Chr1:88573866-88573885 None:intergenic 35.0%
AGAAGACAAAGAACAGAGAA+AGG - Chr1:88571655-88571674 None:intergenic 35.0%
AGCAATAAGAGCCCTATAAA+AGG - Chr1:88571826-88571845 None:intergenic 35.0%
ATAGGTACTCAACACTACAA+TGG - Chr1:88575987-88576006 None:intergenic 35.0%
ATAGTTAAGACCCTACATTG+TGG - Chr1:88575751-88575770 None:intergenic 35.0%
ATCCAAACTGATGTTAAAGC+TGG + Chr1:88571906-88571925 MsG0180005209.01.T01:CDS 35.0%
ATGAATACAGCAAAGCCAAT+GGG - Chr1:88574320-88574339 None:intergenic 35.0%
ATGCTGAAGAACTCACAAAA+TGG + Chr1:88571799-88571818 MsG0180005209.01.T01:CDS 35.0%
ATGTCCAAACTTGTAGAAAG+TGG + Chr1:88573910-88573929 MsG0180005209.01.T01:intron 35.0%
ATTGAGAGACCCTACTTAAT+AGG + Chr1:88575769-88575788 MsG0180005209.01.T01:intron 35.0%
CAGTCAAAACAGTAACGTAA+AGG - Chr1:88571872-88571891 None:intergenic 35.0%
CATCAATTCATCTTAAGAGC+AGG + Chr1:88575041-88575060 MsG0180005209.01.T01:CDS 35.0%
CATCTCATGATCTATGGATT+TGG - Chr1:88577091-88577110 None:intergenic 35.0%
CCCAGTATATTGTATCAAAG+TGG + Chr1:88575637-88575656 MsG0180005209.01.T01:intron 35.0%
CTCAACTTTGACGTCTTAAA+TGG - Chr1:88576060-88576079 None:intergenic 35.0%
CTCAATTGTCTTCAAGATTG+TGG + Chr1:88575206-88575225 MsG0180005209.01.T01:three_prime_UTR 35.0%
CTCATGAGCTTAGTTATGTT+TGG - Chr1:88574657-88574676 None:intergenic 35.0%
CTGACAATACCGATATTGTT+AGG - Chr1:88572111-88572130 None:intergenic 35.0%
CTGCTCTTAAGATGAATTGA+TGG - Chr1:88575043-88575062 None:intergenic 35.0%
GAATCCACTTTCTACAAGTT+TGG - Chr1:88573917-88573936 None:intergenic 35.0%
GACAATGACATAGAAGTCAT+AGG - Chr1:88574008-88574027 None:intergenic 35.0%
GATCAGAGCAATTATGTACA+TGG + Chr1:88572461-88572480 MsG0180005209.01.T01:CDS 35.0%
GCTTACTTTGATAGATATGG+TGG + Chr1:88572540-88572559 MsG0180005209.01.T01:CDS 35.0%
GGAAAAAATTGTCCTAAAGC+GGG - Chr1:88577169-88577188 None:intergenic 35.0%
GGATAAGTGTAGATTAAAGG+GGG + Chr1:88575227-88575246 MsG0180005209.01.T01:intron 35.0%
GTGATATACCTTCTTTGTTG+TGG + Chr1:88577442-88577461 MsG0180005209.01.T01:intron 35.0%
GTGTTGGGAATTGAAAAAGT+GGG - Chr1:88576146-88576165 None:intergenic 35.0%
GTTCACCTAAACATGCTATA+GGG + Chr1:88573739-88573758 MsG0180005209.01.T01:intron 35.0%
GTTTGGATTCACAATGAGTT+TGG - Chr1:88574751-88574770 None:intergenic 35.0%
TACTCCATGTTAGTGAAATG+CGG - Chr1:88577237-88577256 None:intergenic 35.0%
TACTTTGATAGATATGGTGG+TGG + Chr1:88572543-88572562 MsG0180005209.01.T01:CDS 35.0%
TCAGGAATAAAGGATGAATC+TGG - Chr1:88574058-88574077 None:intergenic 35.0%
TCGTGTCTGCTTTAATTCAA+TGG + Chr1:88574261-88574280 MsG0180005209.01.T01:intron 35.0%
TGAAATGAATCGATTGTAGG+TGG + Chr1:88572384-88572403 MsG0180005209.01.T01:intron 35.0%
TGACGAAAGTTGGATAAGAA+GGG + Chr1:88576911-88576930 MsG0180005209.01.T01:intron 35.0%
TGATGCTGAAGAACCTTATA+TGG - Chr1:88577702-88577721 None:intergenic 35.0%
TGCAATTCGTGATGAACATT+TGG + Chr1:88576550-88576569 MsG0180005209.01.T01:intron 35.0%
TGCTGTATTCATGGTTCATT+TGG + Chr1:88574328-88574347 MsG0180005209.01.T01:CDS 35.0%
TGCTTACGTAGATTCTGTAA+AGG - Chr1:88577322-88577341 None:intergenic 35.0%
TGCTTCAAGAATAATTGTGG+TGG + Chr1:88577115-88577134 MsG0180005209.01.T01:intron 35.0%
TGGAAATTATGGTGAAGGAA+AGG - Chr1:88573783-88573802 None:intergenic 35.0%
TGGAATTCTTGGTATTGCTT+GGG + Chr1:88571950-88571969 MsG0180005209.01.T01:CDS 35.0%
TTCACAAAGAAATTCACCCT+TGG + Chr1:88576978-88576997 MsG0180005209.01.T01:intron 35.0%
TTCCAAAATAATACTCCCTC+CGG + Chr1:88573536-88573555 MsG0180005209.01.T01:intron 35.0%
TTGAATGTTTACCATTGGAG+TGG - Chr1:88576215-88576234 None:intergenic 35.0%
TTGACGAAAGTTGGATAAGA+AGG + Chr1:88576910-88576929 MsG0180005209.01.T01:intron 35.0%
TTGGAATTCTTGGTATTGCT+TGG + Chr1:88571949-88571968 MsG0180005209.01.T01:CDS 35.0%
! AAATGTTTTCCTTCGAAGGT+TGG - Chr1:88577511-88577530 None:intergenic 35.0%
! ACACTATCAATGGATCCTTT+TGG - Chr1:88577753-88577772 None:intergenic 35.0%
! AGAAAATGATGTGGAGTGTT+GGG - Chr1:88576161-88576180 None:intergenic 35.0%
! AGTGTTGGGAATTGAAAAAG+TGG - Chr1:88576147-88576166 None:intergenic 35.0%
! ATTTCAAGTGGCACATAGAT+TGG + Chr1:88577837-88577856 MsG0180005209.01.T01:intron 35.0%
! CAATGCTTACTTGCATCTTT+TGG + Chr1:88573716-88573735 MsG0180005209.01.T01:intron 35.0%
! CAGTATTTTCAACATACCTC+AGG - Chr1:88572822-88572841 None:intergenic 35.0%
! CATACATGCACTTTGAAAAC+AGG - Chr1:88572750-88572769 None:intergenic 35.0%
! CATTTAAGACGTCAAAGTTG+AGG + Chr1:88576058-88576077 MsG0180005209.01.T01:intron 35.0%
! CTTTTAGTCAACATCTTGGA+TGG + Chr1:88573507-88573526 MsG0180005209.01.T01:intron 35.0%
! GCCACTTTGATACAATATAC+TGG - Chr1:88575641-88575660 None:intergenic 35.0%
! GCTTCTTTTAGTCAACATCT+TGG + Chr1:88573503-88573522 MsG0180005209.01.T01:intron 35.0%
! GTATTCTTTGAAGGTCATCT+TGG + Chr1:88577254-88577273 MsG0180005209.01.T01:intron 35.0%
! GTTTACGGACTAATTGAGTT+AGG + Chr1:88572141-88572160 MsG0180005209.01.T01:intron 35.0%
! TGTAGTGTTGAGTACCTATT+AGG + Chr1:88575988-88576007 MsG0180005209.01.T01:intron 35.0%
! TTTTCCGACGCTGAATAAAT+CGG + Chr1:88577673-88577692 MsG0180005209.01.T01:intron 35.0%
!! AAGGGAGTACCTATTAAGTA+GGG - Chr1:88575781-88575800 None:intergenic 35.0%
!! AATTGCAACCTCCTAGTTTT+TGG + Chr1:88572950-88572969 MsG0180005209.01.T01:intron 35.0%
!! AGAAATAAAAAGTGGTGGGT+AGG - Chr1:88576241-88576260 None:intergenic 35.0%
!! AGTGACATTTGGGCTATTTT+TGG + Chr1:88572422-88572441 MsG0180005209.01.T01:CDS 35.0%
!! ATTGAAAAAGTGGGTGTTGA+AGG - Chr1:88576137-88576156 None:intergenic 35.0%
!! GAAATAAAAAGTGGTGGGTA+GGG - Chr1:88576240-88576259 None:intergenic 35.0%
!! GATTGTTGGTACCTTTGTTT+TGG + Chr1:88572617-88572636 MsG0180005209.01.T01:CDS 35.0%
!!! TGGATCCTTTTGGTTTGATA+TGG - Chr1:88577743-88577762 None:intergenic 35.0%
!!! TGGTTTGTTTTTTGGTGCTT+TGG + Chr1:88573307-88573326 MsG0180005209.01.T01:intron 35.0%
AAAATTGTCCTAAAGCGGGA+AGG - Chr1:88577165-88577184 None:intergenic 40.0%
AAAGTTGAGGATCTCCATTG+TGG + Chr1:88576071-88576090 MsG0180005209.01.T01:intron 40.0%
AACATTTGGATCACGCAACT+CGG + Chr1:88576564-88576583 MsG0180005209.01.T01:intron 40.0%
AAGCACATATGGACAAAGTG+TGG - Chr1:88576517-88576536 None:intergenic 40.0%
ACACGCTAAAGAGAATACAG+AGG - Chr1:88575268-88575287 None:intergenic 40.0%
ACATGTGATTTAGTTGCCTG+AGG + Chr1:88572803-88572822 MsG0180005209.01.T01:intron 40.0%
ACTCCATGTTAGTGAAATGC+GGG - Chr1:88577236-88577255 None:intergenic 40.0%
ACTTAATAGGTACTCCCTTG+TGG + Chr1:88575782-88575801 MsG0180005209.01.T01:intron 40.0%
AGGAAGAGACTTTGTTGATG+GGG - Chr1:88571635-88571654 None:intergenic 40.0%
AGGATCAGTAGCAGAGAAAA+CGG - Chr1:88572649-88572668 None:intergenic 40.0%
AGTAGTCGTCAATGAGTCTT+TGG + Chr1:88577586-88577605 MsG0180005209.01.T01:intron 40.0%
AGTTCTTCAGCATCAATGAG+TGG - Chr1:88571792-88571811 None:intergenic 40.0%
ATACTTATCGGGTTCACTTG+AGG + Chr1:88576874-88576893 MsG0180005209.01.T01:intron 40.0%
ATCAATCCTGCTAGAAGTCT+TGG + Chr1:88574377-88574396 MsG0180005209.01.T01:CDS 40.0%
ATTAACCCAGCAGTGACATT+TGG + Chr1:88572411-88572430 MsG0180005209.01.T01:CDS 40.0%
ATTGTTAGGTCGGACTGAAA+AGG - Chr1:88572068-88572087 None:intergenic 40.0%
CAAACTGATGTTAAAGCTGG+TGG + Chr1:88571909-88571928 MsG0180005209.01.T01:CDS 40.0%
CAATACCGATATTGTTAGGC+CGG - Chr1:88572107-88572126 None:intergenic 40.0%
CAGAGCAATTATGTACATGG+TGG + Chr1:88572464-88572483 MsG0180005209.01.T01:CDS 40.0%
CAGTTGCATCTCATGATCTA+TGG - Chr1:88577097-88577116 None:intergenic 40.0%
CATGAATACAGCAAAGCCAA+TGG - Chr1:88574321-88574340 None:intergenic 40.0%
CCAATTAGATTTGCCAGCTT+AGG - Chr1:88574030-88574049 None:intergenic 40.0%
CCACAAACAACTCTCATACA+AGG - Chr1:88573875-88573894 None:intergenic 40.0%
CCTAAGCTGGCAAATCTAAT+TGG + Chr1:88574027-88574046 MsG0180005209.01.T01:intron 40.0%
CCTCATGATGATACCCAAAT+CGG + Chr1:88576748-88576767 MsG0180005209.01.T01:intron 40.0%
CCTTGTATGAGAGTTGTTTG+TGG + Chr1:88573872-88573891 MsG0180005209.01.T01:intron 40.0%
CGGTATTGTCAGTTGAGTTA+GGG + Chr1:88572119-88572138 MsG0180005209.01.T01:intron 40.0%
CTACAACAAAGATAAGCCCT+GGG + Chr1:88574412-88574431 MsG0180005209.01.T01:CDS 40.0%
CTCTCATACAAGGTATGATG+GGG - Chr1:88573865-88573884 None:intergenic 40.0%
CTTAGACCATCCACAATGTA+GGG + Chr1:88575738-88575757 MsG0180005209.01.T01:intron 40.0%
GAACAATGCACTCAAACAGT+AGG - Chr1:88575101-88575120 None:intergenic 40.0%
GAATCTCTAGCACTTCTCTT+AGG - Chr1:88572669-88572688 None:intergenic 40.0%
GAGAAAATGATGTGGAGTGT+TGG - Chr1:88576162-88576181 None:intergenic 40.0%
GAGATACATATGCTCAACGT+TGG - Chr1:88576687-88576706 None:intergenic 40.0%
GCAATGCGAATGTTAGCATA+TGG - Chr1:88577403-88577422 None:intergenic 40.0%
GCTCTTAGACCATGTACAAT+GGG + Chr1:88576096-88576115 MsG0180005209.01.T01:intron 40.0%
GGCTTCCATATCAAACCAAA+AGG + Chr1:88577735-88577754 MsG0180005209.01.T01:intron 40.0%
GGTTCACCTAAACATGCTAT+AGG + Chr1:88573738-88573757 MsG0180005209.01.T01:intron 40.0%
GTAATCCATCCAAATGGCAA+AGG + Chr1:88571704-88571723 MsG0180005209.01.T01:exon 40.0%
GTCAGTTGAGTTAGGGTTTA+CGG + Chr1:88572126-88572145 MsG0180005209.01.T01:intron 40.0%
TACCACCCTATAGCATGTTT+AGG - Chr1:88573747-88573766 None:intergenic 40.0%
TCAGTCCGACCTAACAATAT+CGG + Chr1:88572070-88572089 MsG0180005209.01.T01:intron 40.0%
TCATTTACTAGGGGGGATAA+GGG - Chr1:88577142-88577161 None:intergenic 40.0%
TCCCTCAGATTGCTCAAAAT+CGG + Chr1:88576660-88576679 MsG0180005209.01.T01:intron 40.0%
TCGGTATTGTCAGTTGAGTT+AGG + Chr1:88572118-88572137 MsG0180005209.01.T01:intron 40.0%
TCTACAACAAAGATAAGCCC+TGG + Chr1:88574411-88574430 MsG0180005209.01.T01:CDS 40.0%
TCTATGTCATTGTCCTAAGC+TGG + Chr1:88574014-88574033 MsG0180005209.01.T01:intron 40.0%
TCTTAGACCATCCACAATGT+AGG + Chr1:88575737-88575756 MsG0180005209.01.T01:intron 40.0%
TGCTCTTAGACCATGTACAA+TGG + Chr1:88576095-88576114 MsG0180005209.01.T01:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG + Chr1:88573670-88573689 MsG0180005209.01.T01:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG - Chr1:88573689-88573670 None:intergenic 40.0%
TGTATGAGAGTTGTTTGTGG+AGG + Chr1:88573875-88573894 MsG0180005209.01.T01:intron 40.0%
TGTTCCACATCATCAAACAC+CGG + Chr1:88577010-88577029 MsG0180005209.01.T01:intron 40.0%
TTAAAGCTCTCGGATCATTC+AGG + Chr1:88575069-88575088 MsG0180005209.01.T01:CDS 40.0%
TTAACCCAGCAGTGACATTT+GGG + Chr1:88572412-88572431 MsG0180005209.01.T01:CDS 40.0%
TTAAGACCCTACATTGTGGA+TGG - Chr1:88575747-88575766 None:intergenic 40.0%
TTGATATCGTTCAACGTTCC+TGG + Chr1:88577049-88577068 MsG0180005209.01.T01:intron 40.0%
TTGCTTATAAATGTGACCGG+AGG + Chr1:88573669-88573688 MsG0180005209.01.T01:intron 40.0%
TTGCTTATAAATGTGACCGG+AGG - Chr1:88573688-88573669 None:intergenic 40.0%
TTGGCAAATCACCGTGATTT+AGG - Chr1:88574732-88574751 None:intergenic 40.0%
! AAAGCCTATGTTTGGTTCCA+TGG - Chr1:88574803-88574822 None:intergenic 40.0%
! AGTTGATGCCACAACAAAGA+AGG - Chr1:88577453-88577472 None:intergenic 40.0%
! CACCAGCTTTAACATCAGTT+TGG - Chr1:88571911-88571930 None:intergenic 40.0%
! GTTCTTCAGCATCACGTTTT+TGG + Chr1:88577708-88577727 MsG0180005209.01.T01:intron 40.0%
! TATGGATTTGGCATGCCTTT+TGG - Chr1:88577079-88577098 None:intergenic 40.0%
! TGATTTGTGGCCAATCCAAT+TGG + Chr1:88574777-88574796 MsG0180005209.01.T01:intron 40.0%
! TGCTGTGGTACATTTTGCTA+AGG + Chr1:88577420-88577439 MsG0180005209.01.T01:intron 40.0%
! TTGTAGGACATAGCCGATTT+GGG - Chr1:88576764-88576783 None:intergenic 40.0%
!! AATAGGAGGTACTACAGCAT+TGG - Chr1:88577347-88577366 None:intergenic 40.0%
!! ACCGATTTTGAGCAATCTGA+GGG - Chr1:88576664-88576683 None:intergenic 40.0%
!! ATATGGAAAAGGCACTCACA+TGG - Chr1:88574442-88574461 None:intergenic 40.0%
!! CAAGGGAGTACCTATTAAGT+AGG - Chr1:88575782-88575801 None:intergenic 40.0%
!! CATTGGCTTTGCTGTATTCA+TGG + Chr1:88574319-88574338 MsG0180005209.01.T01:CDS 40.0%
!! GGGTGTTGAATGTTTACCAT+TGG - Chr1:88576220-88576239 None:intergenic 40.0%
!! GTGTTTGATGATGTGGAACA+GGG - Chr1:88577010-88577029 None:intergenic 40.0%
!! TACAGTACTGGTGTTGGATT+AGG + Chr1:88572588-88572607 MsG0180005209.01.T01:CDS 40.0%
!! TCCAAACCAGCATTGATTTG+TGG + Chr1:88574764-88574783 MsG0180005209.01.T01:intron 40.0%
!! TTTGGGTTGGACCATTCATT+GGG + Chr1:88574997-88575016 MsG0180005209.01.T01:CDS 40.0%
!!! CAGCATCACGTTTTTGGAAT+AGG + Chr1:88577714-88577733 MsG0180005209.01.T01:intron 40.0%
!!! TTTTGGGTTGGACCATTCAT+TGG + Chr1:88574996-88575015 MsG0180005209.01.T01:CDS 40.0%
AACGTTCCTGGACATCCAAA+AGG + Chr1:88577061-88577080 MsG0180005209.01.T01:intron 45.0%
AAGCGGGAAGGTCATTTACT+AGG - Chr1:88577153-88577172 None:intergenic 45.0%
AATAGCCCAAATGTCACTGC+TGG - Chr1:88572420-88572439 None:intergenic 45.0%
ACATGGTGGCTCAGTGTTTA+GGG + Chr1:88572478-88572497 MsG0180005209.01.T01:CDS 45.0%
AGCGGGAAGGTCATTTACTA+GGG - Chr1:88577152-88577171 None:intergenic 45.0%
AGCGTGCCTTTGTGGTATAT+GGG + Chr1:88573836-88573855 MsG0180005209.01.T01:intron 45.0%
AGTGTCCGGCCTAACAATAT+CGG + Chr1:88572099-88572118 MsG0180005209.01.T01:intron 45.0%
ATAGCCCAAATGTCACTGCT+GGG - Chr1:88572419-88572438 None:intergenic 45.0%
ATATGGTGTGGCAACAGATG+CGG - Chr1:88577386-88577405 None:intergenic 45.0%
ATGAGAGTTGTTTGTGGAGG+TGG + Chr1:88573878-88573897 MsG0180005209.01.T01:intron 45.0%
ATGATGGCATTTACTCCCTC+CGG - Chr1:88573688-88573707 None:intergenic 45.0%
CACCTAAACATGCTATAGGG+TGG + Chr1:88573742-88573761 MsG0180005209.01.T01:intron 45.0%
CAGATCTCGTGAAGCACATA+TGG - Chr1:88576528-88576547 None:intergenic 45.0%
CATCATCAAACACCGGTGAT+CGG + Chr1:88577017-88577036 MsG0180005209.01.T01:intron 45.0%
CGATTGCAATGTTTCGTCGT+CGG - Chr1:88577547-88577566 None:intergenic 45.0%
CGTCGGAAAAAACTAGAGGA+AGG - Chr1:88577663-88577682 None:intergenic 45.0%
CTCCATGTTAGTGAAATGCG+GGG - Chr1:88577235-88577254 None:intergenic 45.0%
CTTCAACGTCCTTTGCCATT+TGG - Chr1:88571716-88571735 None:intergenic 45.0%
CTTGTAGGACATAGCCGATT+TGG - Chr1:88576765-88576784 None:intergenic 45.0%
GAAAGTTCTCCAACCTTCGA+AGG + Chr1:88577499-88577518 MsG0180005209.01.T01:intron 45.0%
GAAGTGTGGAATAGAGTGAG+AGG - Chr1:88571613-88571632 None:intergenic 45.0%
GCAATCGTCTATTAGGCTCA+TGG + Chr1:88577560-88577579 MsG0180005209.01.T01:intron 45.0%
GCGAATGTTAGCATATGGTG+TGG - Chr1:88577398-88577417 None:intergenic 45.0%
GTAAATGACCTTCCCGCTTT+AGG + Chr1:88577154-88577173 MsG0180005209.01.T01:intron 45.0%
GTCATTTACTAGGGGGGATA+AGG - Chr1:88577143-88577162 None:intergenic 45.0%
GTGACAAAACAAATGGGGGA+TGG - Chr1:88574194-88574213 None:intergenic 45.0%
TACATGGTGGCTCAGTGTTT+AGG + Chr1:88572477-88572496 MsG0180005209.01.T01:CDS 45.0%
TACTGCACTGCTGGAATTTC+AGG + Chr1:88572002-88572021 MsG0180005209.01.T01:CDS 45.0%
TCCATGTTAGTGAAATGCGG+GGG - Chr1:88577234-88577253 None:intergenic 45.0%
TGCTAACATTCGCATTGCTG+TGG + Chr1:88577405-88577424 MsG0180005209.01.T01:intron 45.0%
TGCTAGAGATTCACATGTGC+CGG + Chr1:88572677-88572696 MsG0180005209.01.T01:CDS 45.0%
TGGAATAGAGTGAGAGGAGA+GGG - Chr1:88571607-88571626 None:intergenic 45.0%
TTCCAGCAGTGCAGTAAACA+AGG - Chr1:88571998-88572017 None:intergenic 45.0%
TTGGCCATGGAACCAAACAT+AGG + Chr1:88574796-88574815 MsG0180005209.01.T01:intron 45.0%
! AACGTCCTTTGCCATTTGGA+TGG - Chr1:88571712-88571731 None:intergenic 45.0%
! AAGGACATCGAACGTGCTTT+TGG - Chr1:88576828-88576847 None:intergenic 45.0%
! ACGCACATGATTTGCAAAGG+TGG + Chr1:88576594-88576613 MsG0180005209.01.T01:intron 45.0%
! ACTTTGTTGATGGGGAAGTG+TGG - Chr1:88571627-88571646 None:intergenic 45.0%
! AGCACGCACATGATTTGCAA+AGG + Chr1:88576591-88576610 MsG0180005209.01.T01:intron 45.0%
! CGCACATGATTTGCAAAGGT+GGG + Chr1:88576595-88576614 MsG0180005209.01.T01:intron 45.0%
! CTTGGTATTGCTTGGGCTTT+TGG + Chr1:88571957-88571976 MsG0180005209.01.T01:CDS 45.0%
! GATTGGCCACAAATCAATGC+TGG - Chr1:88574773-88574792 None:intergenic 45.0%
! GCCACAAATCAATGCTGGTT+TGG - Chr1:88574768-88574787 None:intergenic 45.0%
! GGTGCTAATTTTCTCCACGA+TGG + Chr1:88572564-88572583 MsG0180005209.01.T01:CDS 45.0%
! GTGTGGTCAGTGGATCTTTT+GGG + Chr1:88574980-88574999 MsG0180005209.01.T01:intron 45.0%
! TCAGCGTCGGAAAAAACTAG+AGG - Chr1:88577667-88577686 None:intergenic 45.0%
! TGAGAGGAGAGGGGTATATA+TGG - Chr1:88571597-88571616 None:intergenic 45.0%
! TGTGTGGTCAGTGGATCTTT+TGG + Chr1:88574979-88574998 MsG0180005209.01.T01:intron 45.0%
! TGTTTGGTTCCATGGCCAAT+TGG - Chr1:88574795-88574814 None:intergenic 45.0%
! TTGATGGTAGAAGGCTGCAA+TGG - Chr1:88575027-88575046 None:intergenic 45.0%
!! ATCACCGGTGTTTGATGATG+TGG - Chr1:88577017-88577036 None:intergenic 45.0%
!! CAATGTTTCGTCGTCGGTTT+CGG - Chr1:88577541-88577560 None:intergenic 45.0%
!! CCGATTTGGGTATCATCATG+AGG - Chr1:88576751-88576770 None:intergenic 45.0%
!! GACCGATTTTGAGCAATCTG+AGG - Chr1:88576665-88576684 None:intergenic 45.0%
!! GAGTATTGACTGCATGCACT+GGG - Chr1:88577195-88577214 None:intergenic 45.0%
!! GATGGTTACAGTACTGGTGT+TGG + Chr1:88572582-88572601 MsG0180005209.01.T01:CDS 45.0%
!! GGATTAGGTGCTGAGATTGT+TGG + Chr1:88572603-88572622 MsG0180005209.01.T01:CDS 45.0%
!! GGTGTTTGATGATGTGGAAC+AGG - Chr1:88577011-88577030 None:intergenic 45.0%
!! GTCACCGATTTATTCAGCGT+CGG - Chr1:88577680-88577699 None:intergenic 45.0%
!! TGAGGGTCTTCTAAGACTCA+GGG + Chr1:88575816-88575835 MsG0180005209.01.T01:intron 45.0%
!! TGGTCTAAGAGCATCCACAA+TGG - Chr1:88576088-88576107 None:intergenic 45.0%
!! TTGAGGGTCTTCTAAGACTC+AGG + Chr1:88575815-88575834 MsG0180005209.01.T01:intron 45.0%
!! TTGGGTTGGACCATTCATTG+GGG + Chr1:88574998-88575017 MsG0180005209.01.T01:CDS 45.0%
!! TTGGTGCTTTGGTTCTGCTT+TGG + Chr1:88573318-88573337 MsG0180005209.01.T01:intron 45.0%
!!! GACCGGAGGGAGTATTATTT+TGG - Chr1:88573541-88573560 None:intergenic 45.0%
!!! TGGGCTATTTTTGGCTCGTA+AGG + Chr1:88572431-88572450 MsG0180005209.01.T01:CDS 45.0%
!! TATTACATTAAAAAAATATT+TGG - Chr1:88573213-88573232 None:intergenic 5.0%
!! TTTAGAAAATAAATAAATTA+AGG - Chr1:88573168-88573187 None:intergenic 5.0%
!!! TTTTTAAGATATAAAATAAT+TGG + Chr1:88573345-88573364 MsG0180005209.01.T01:intron 5.0%
ACAAATGGGGGATGGACAGA+TGG - Chr1:88574186-88574205 None:intergenic 50.0%
ACAGCAAAGCCAATGGGAAG+TGG - Chr1:88574314-88574333 None:intergenic 50.0%
ACCCCCGCATTTCACTAACA+TGG + Chr1:88577230-88577249 MsG0180005209.01.T01:intron 50.0%
CAAATGGGGGATGGACAGAT+GGG - Chr1:88574185-88574204 None:intergenic 50.0%
CACCAGTACTGTAACCATCG+TGG - Chr1:88572581-88572600 None:intergenic 50.0%
CACGTTCGATGTCCTTTCGA+CGG + Chr1:88576832-88576851 MsG0180005209.01.T01:intron 50.0%
CAGCGTGCCTTTGTGGTATA+TGG + Chr1:88573835-88573854 MsG0180005209.01.T01:intron 50.0%
CAGTGTTTAGGGGCTATTGC+TGG + Chr1:88572489-88572508 MsG0180005209.01.T01:CDS 50.0%
CATGGTGGCTCAGTGTTTAG+GGG + Chr1:88572479-88572498 MsG0180005209.01.T01:CDS 50.0%
CGGGAAGGTCATTTACTAGG+GGG - Chr1:88577150-88577169 None:intergenic 50.0%
CGTGCCTTTGTGGTATATGG+GGG + Chr1:88573838-88573857 MsG0180005209.01.T01:intron 50.0%
CTCCACGATGGTTACAGTAC+TGG + Chr1:88572576-88572595 MsG0180005209.01.T01:CDS 50.0%
GACGTTGAAGTTGCTGAACG+TGG + Chr1:88571726-88571745 MsG0180005209.01.T01:CDS 50.0%
GATCCACTGACCACACACAA+AGG - Chr1:88574976-88574995 None:intergenic 50.0%
GCAGAACCAAGACTTCTAGC+AGG - Chr1:88574386-88574405 None:intergenic 50.0%
GCGGGAAGGTCATTTACTAG+GGG - Chr1:88577151-88577170 None:intergenic 50.0%
GCGTGCCTTTGTGGTATATG+GGG + Chr1:88573837-88573856 MsG0180005209.01.T01:intron 50.0%
GGAATAGAGTGAGAGGAGAG+GGG - Chr1:88571606-88571625 None:intergenic 50.0%
GGGAAGGTCATTTACTAGGG+GGG - Chr1:88577149-88577168 None:intergenic 50.0%
GGTTCCATGGCCAATTGGAT+TGG - Chr1:88574790-88574809 None:intergenic 50.0%
GTGGAATAGAGTGAGAGGAG+AGG - Chr1:88571608-88571627 None:intergenic 50.0%
GTTCCTTTGTGTGTGGTCAG+TGG + Chr1:88574970-88574989 MsG0180005209.01.T01:intron 50.0%
TAGGGGCTATTGCTGGAGTT+GGG + Chr1:88572496-88572515 MsG0180005209.01.T01:CDS 50.0%
TCAATACTCCCGATCATCCC+TGG + Chr1:88577206-88577225 MsG0180005209.01.T01:intron 50.0%
TCAGCATCAATGAGTGGTGC+TGG - Chr1:88571786-88571805 None:intergenic 50.0%
TGCAAAGGTGGGTAACACCT+CGG + Chr1:88576606-88576625 MsG0180005209.01.T01:intron 50.0%
TGGAACAGGGAAGACTCCAA+GGG - Chr1:88576997-88577016 None:intergenic 50.0%
TGTTGTGGCATCAACTCGCT+GGG + Chr1:88577457-88577476 MsG0180005209.01.T01:intron 50.0%
TTAGGGGCTATTGCTGGAGT+TGG + Chr1:88572495-88572514 MsG0180005209.01.T01:CDS 50.0%
TTGTTGTGGCATCAACTCGC+TGG + Chr1:88577456-88577475 MsG0180005209.01.T01:intron 50.0%
! AAAGCTGGTGGTGATGCTTG+TGG + Chr1:88571921-88571940 MsG0180005209.01.T01:CDS 50.0%
! CAACGTTCTAGACCGATCAC+CGG - Chr1:88577032-88577051 None:intergenic 50.0%
! GGTATTGCTTGGGCTTTTGG+TGG + Chr1:88571960-88571979 MsG0180005209.01.T01:CDS 50.0%
! GTCCTTGTTTACTGCACTGC+TGG + Chr1:88571993-88572012 MsG0180005209.01.T01:CDS 50.0%
! TGTGGCGGTGTTGGAATTCT+TGG + Chr1:88571939-88571958 MsG0180005209.01.T01:CDS 50.0%
!! CTAGAGGAAGGTAGTGGATC+TGG - Chr1:88577651-88577670 None:intergenic 50.0%
!! GCAGGTGCTGTTAAAGCTCT+CGG + Chr1:88575059-88575078 MsG0180005209.01.T01:CDS 50.0%
!! GGAGTATTGACTGCATGCAC+TGG - Chr1:88577196-88577215 None:intergenic 50.0%
!! GGTCAGTGGATCTTTTGGGT+TGG + Chr1:88574984-88575003 MsG0180005209.01.T01:intron 50.0%
!! GTTTTGGCACCACTTCCCAT+TGG + Chr1:88574302-88574321 MsG0180005209.01.T01:CDS 50.0%
!! TGCTGGAGTTGGGTTGGTTA+AGG + Chr1:88572506-88572525 MsG0180005209.01.T01:CDS 50.0%
ACAACAGCAGCGTGCCTTTG+TGG + Chr1:88573828-88573847 MsG0180005209.01.T01:intron 55.0%
ACAACAGGAGAGCCGTCGAA+AGG - Chr1:88576847-88576866 None:intergenic 55.0%
ACCTCGGTCGAGTATGGTTG+CGG + Chr1:88576622-88576641 MsG0180005209.01.T01:intron 55.0%
AGTGAAATGCGGGGGTTCCA+GGG - Chr1:88577226-88577245 None:intergenic 55.0%
GCAATGGCTGCCCCAATGAA+TGG - Chr1:88575011-88575030 None:intergenic 55.0%
GCACTCACATGGTCATCCCA+GGG - Chr1:88574431-88574450 None:intergenic 55.0%
GCTATGTCCTACAAGCGAGC+TGG + Chr1:88576770-88576789 MsG0180005209.01.T01:intron 55.0%
GGCTATTGCTGGAGTTGGGT+TGG + Chr1:88572500-88572519 MsG0180005209.01.T01:CDS 55.0%
GGGACCCCCATATACCACAA+AGG - Chr1:88573845-88573864 None:intergenic 55.0%
GGTAACACCTCGGTCGAGTA+TGG + Chr1:88576616-88576635 MsG0180005209.01.T01:intron 55.0%
GTGGAACAGGGAAGACTCCA+AGG - Chr1:88576998-88577017 None:intergenic 55.0%
GTGGCCAATCCAATTGGCCA+TGG + Chr1:88574783-88574802 MsG0180005209.01.T01:intron 55.0%
TAGTGAAATGCGGGGGTTCC+AGG - Chr1:88577227-88577246 None:intergenic 55.0%
TCGTGAACCAGCTCGCTTGT+AGG - Chr1:88576780-88576799 None:intergenic 55.0%
TGATGCCAGTGCCAGTGACT+GGG - Chr1:88574361-88574380 None:intergenic 55.0%
TTGACTGCATGCACTGGGAG+TGG - Chr1:88577190-88577209 None:intergenic 55.0%
TTGATGCCAGTGCCAGTGAC+TGG - Chr1:88574362-88574381 None:intergenic 55.0%
TTGGCAACCATCCCAGTCAC+TGG + Chr1:88574347-88574366 MsG0180005209.01.T01:CDS 55.0%
! GCATCAATGAGTGGTGCTGG+TGG - Chr1:88571783-88571802 None:intergenic 55.0%
! GGCATGCCTTTTGGATGTCC+AGG - Chr1:88577070-88577089 None:intergenic 55.0%
!! CAATGAGTGGTGCTGGTGGA+GGG - Chr1:88571779-88571798 None:intergenic 55.0%
!! TCAATGAGTGGTGCTGGTGG+AGG - Chr1:88571780-88571799 None:intergenic 55.0%
ACCATCCCAGTCACTGGCAC+TGG + Chr1:88574353-88574372 MsG0180005209.01.T01:CDS 60.0%
ACCGCAACCATACTCGACCG+AGG - Chr1:88576626-88576645 None:intergenic 60.0%
GGCACTCACATGGTCATCCC+AGG - Chr1:88574432-88574451 None:intergenic 60.0%
GGTGATGCTTGTGGCGGTGT+TGG + Chr1:88571930-88571949 MsG0180005209.01.T01:CDS 60.0%
! GCTGGTGGTGATGCTTGTGG+CGG + Chr1:88571924-88571943 MsG0180005209.01.T01:CDS 60.0%
CGGGGGTTCCAGGGATGATC+GGG - Chr1:88577217-88577236 None:intergenic 65.0%
GCCAGTGCCAGTGACTGGGA+TGG - Chr1:88574357-88574376 None:intergenic 65.0%
GCGGGGGTTCCAGGGATGAT+CGG - Chr1:88577218-88577237 None:intergenic 65.0%
!! GTGGTGCTGGTGGAGGGTCG+TGG - Chr1:88571773-88571792 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 88571578 88578205 88571578 ID=MsG0180005209.01;Name=MsG0180005209.01
Chr1 mRNA 88571578 88578205 88571578 ID=MsG0180005209.01.T01;Parent=MsG0180005209.01;Name=MsG0180005209.01.T01;_AED=0.48;_eAED=0.48;_QI=139|1|1|1|0.75|0.6|5|368|287
Chr1 exon 88571578 88572023 88571578 ID=MsG0180005209.01.T01:exon:37313;Parent=MsG0180005209.01.T01
Chr1 exon 88572403 88572698 88572403 ID=MsG0180005209.01.T01:exon:37314;Parent=MsG0180005209.01.T01
Chr1 exon 88574302 88574442 88574302 ID=MsG0180005209.01.T01:exon:37315;Parent=MsG0180005209.01.T01
Chr1 exon 88574990 88575228 88574990 ID=MsG0180005209.01.T01:exon:37316;Parent=MsG0180005209.01.T01
Chr1 exon 88577957 88578205 88577957 ID=MsG0180005209.01.T01:exon:37317;Parent=MsG0180005209.01.T01
Chr1 five_prime_UTR 88571578 88571716 88571578 ID=MsG0180005209.01.T01:five_prime_utr;Parent=MsG0180005209.01.T01
Chr1 CDS 88571717 88572023 88571717 ID=MsG0180005209.01.T01:cds;Parent=MsG0180005209.01.T01
Chr1 CDS 88572403 88572698 88572403 ID=MsG0180005209.01.T01:cds;Parent=MsG0180005209.01.T01
Chr1 CDS 88574302 88574442 88574302 ID=MsG0180005209.01.T01:cds;Parent=MsG0180005209.01.T01
Chr1 CDS 88574990 88575109 88574990 ID=MsG0180005209.01.T01:cds;Parent=MsG0180005209.01.T01
Chr1 three_prime_UTR 88575110 88575228 88575110 ID=MsG0180005209.01.T01:three_prime_utr;Parent=MsG0180005209.01.T01
Chr1 three_prime_UTR 88577957 88578205 88577957 ID=MsG0180005209.01.T01:three_prime_utr;Parent=MsG0180005209.01.T01
Gene Sequence

>MsG0180005209.01.T01

ATGGCAAAGGACGTTGAAGTTGCTGAACGTGGCTCTTTCTCTAACAAAGACTACCACGACCCTCCACCAGCACCACTCATTGATGCTGAAGAACTCACAAAATGGTCCTTTTATAGGGCTCTTATTGCTGAGTTCATTGCAACTTTACTTTTCCTTTACGTTACTGTTTTGACTGTTATTGGTTACAGTATCCAAACTGATGTTAAAGCTGGTGGTGATGCTTGTGGCGGTGTTGGAATTCTTGGTATTGCTTGGGCTTTTGGTGGCATGATCTTTGTCCTTGTTTACTGCACTGCTGGAATTTCAGGTGGTCACATTAACCCAGCAGTGACATTTGGGCTATTTTTGGCTCGTAAGGTGTCTTTGATCAGAGCAATTATGTACATGGTGGCTCAGTGTTTAGGGGCTATTGCTGGAGTTGGGTTGGTTAAGGCTTTTCAAAGTGCTTACTTTGATAGATATGGTGGTGGTGCTAATTTTCTCCACGATGGTTACAGTACTGGTGTTGGATTAGGTGCTGAGATTGTTGGTACCTTTGTTTTGGTTTACACCGTTTTCTCTGCTACTGATCCTAAGAGAAGTGCTAGAGATTCACATGTGCCGGTTTTGGCACCACTTCCCATTGGCTTTGCTGTATTCATGGTTCATTTGGCAACCATCCCAGTCACTGGCACTGGCATCAATCCTGCTAGAAGTCTTGGTTCTGCTGTTATCTACAACAAAGATAAGCCCTGGGATGACCATTGGATCTTTTGGGTTGGACCATTCATTGGGGCAGCCATTGCAGCCTTCTACCATCAATTCATCTTAAGAGCAGGTGCTGTTAAAGCTCTCGGATCATTCAGGAGTAACCCTACTGTTTGA
Protein sequence

>MsG0180005209.01.T01

MAKDVEVAERGSFSNKDYHDPPPAPLIDAEELTKWSFYRALIAEFIATLLFLYVTVLTVIGYSIQTDVKAGGDACGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAIAGVGLVKAFQSAYFDRYGGGANFLHDGYSTGVGLGAEIVGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGSAVIYNKDKPWDDHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPTV*