AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018608.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018608.01.T01 MTR_4g415300 99.654 289 1 0 1 289 1 289 0.0 591
MsG0480018608.01.T01 MTR_8g098375 83.681 288 43 2 3 289 2 286 6.04e-180 497
MsG0480018608.01.T01 MTR_5g010150 84.375 288 41 2 3 289 2 286 3.69e-179 495
MsG0480018608.01.T01 MTR_5g082070 81.034 290 53 2 1 289 1 289 2.85e-174 483
MsG0480018608.01.T01 MTR_3g070210 80.690 290 54 2 1 289 1 289 2.22e-173 481
MsG0480018608.01.T01 MTR_4g415300 99.061 213 2 0 1 213 1 213 5.87e-157 437
MsG0480018608.01.T01 MTR_3g070210 79.468 263 52 2 1 262 1 262 3.36e-152 427
MsG0480018608.01.T01 MTR_7g101190 73.541 257 62 1 33 283 16 272 3.04e-138 392
MsG0480018608.01.T01 MTR_2g094270 67.778 270 80 1 26 288 10 279 6.17e-135 383
MsG0480018608.01.T01 MTR_3g118010 69.531 256 78 0 33 288 14 269 6.31e-132 375
MsG0480018608.01.T01 MTR_4g059390 66.171 269 85 1 26 288 9 277 1.48e-130 372
MsG0480018608.01.T01 MTR_8g098375 76.190 231 49 3 3 230 2 229 4.90e-125 356
MsG0480018608.01.T01 MTR_5g010150 81.604 212 35 2 3 213 2 210 1.12e-122 350
MsG0480018608.01.T01 MTR_2g094270 68.880 241 68 1 26 259 10 250 1.14e-119 344
MsG0480018608.01.T01 MTR_3g070210 77.103 214 47 2 1 213 1 213 3.31e-118 338
MsG0480018608.01.T01 MTR_1g095070 78.261 184 40 0 100 283 23 206 1.48e-105 306
MsG0480018608.01.T01 MTR_1g095070 78.750 160 34 0 100 259 23 182 1.07e-89 265
MsG0480018608.01.T01 MTR_4g059390 63.918 194 64 1 26 213 9 202 3.64e-85 254
MsG0480018608.01.T01 MTR_1g077540 36.170 235 124 8 56 281 21 238 1.28e-31 118
MsG0480018608.01.T01 MTR_6g069040 38.462 234 129 6 56 285 21 243 1.36e-31 118
MsG0480018608.01.T01 MTR_7g103030 35.526 228 132 6 56 280 21 236 4.69e-31 116
MsG0480018608.01.T01 MTR_1g115405 37.917 240 130 8 48 281 13 239 5.93e-31 116
MsG0480018608.01.T01 MTR_2g101370 34.764 233 138 5 51 280 15 236 1.49e-29 112
MsG0480018608.01.T01 MTR_4g063090 34.842 221 130 5 61 278 26 235 1.66e-28 110
MsG0480018608.01.T01 MTR_1g006490 35.088 228 126 7 56 278 19 229 8.18e-28 108
MsG0480018608.01.T01 MTR_8g013680 35.470 234 131 7 51 277 12 232 1.32e-27 107
MsG0480018608.01.T01 MTR_1g006590 36.087 230 121 9 56 278 19 229 6.44e-27 105
MsG0480018608.01.T01 MTR_5g012810 35.556 225 130 5 56 277 19 231 9.87e-27 105
MsG0480018608.01.T01 MTR_7g023350 35.776 232 130 7 56 281 21 239 4.07e-26 103
MsG0480018608.01.T01 MTR_2g060360 32.645 242 122 8 56 281 19 235 1.14e-21 92.0
MsG0480018608.01.T01 MTR_8g087710 28.409 264 164 8 26 280 1 248 1.20e-19 86.7
MsG0480018608.01.T01 MTR_5g063930 25.591 254 160 6 25 277 19 244 3.50e-19 85.1
MsG0480018608.01.T01 MTR_7g010650 30.085 236 144 9 54 287 35 251 1.18e-18 84.0
MsG0480018608.01.T01 MTR_4g075570 30.811 185 108 7 103 272 95 274 5.68e-18 82.8
MsG0480018608.01.T01 MTR_2g017660 28.761 226 146 6 45 270 28 238 5.73e-18 82.0
MsG0480018608.01.T01 MTR_4g075590 27.530 247 159 8 48 282 29 267 1.04e-17 82.0
MsG0480018608.01.T01 MTR_2g017590 31.604 212 130 6 59 270 39 235 2.23e-17 80.5
MsG0480018608.01.T01 MTR_8g087720 27.632 228 150 6 53 280 35 247 2.66e-17 80.1
MsG0480018608.01.T01 MTR_2g017620 31.336 217 134 6 54 270 36 237 3.67e-17 79.7
MsG0480018608.01.T01 MTR_2g017620 31.336 217 134 6 54 270 22 223 3.89e-17 79.3
MsG0480018608.01.T01 MTR_4g084880 26.577 222 150 5 59 280 38 246 1.49e-16 78.2
MsG0480018608.01.T01 MTR_5g079570 28.017 232 152 6 59 289 39 256 3.56e-16 77.0
MsG0480018608.01.T01 MTR_4g006730 28.302 212 134 6 60 270 79 273 6.66e-16 76.6
MsG0480018608.01.T01 MTR_2g104940 30.516 213 128 8 60 270 84 278 2.40e-15 75.1
MsG0480018608.01.T01 MTR_2g017610 29.245 212 135 5 59 270 41 237 5.94e-15 73.6
MsG0480018608.01.T01 MTR_3g008920 27.803 223 137 7 60 278 30 232 1.04e-14 72.8
MsG0480018608.01.T01 MTR_2g017570 28.774 212 136 5 59 270 41 237 1.79e-14 72.4
MsG0480018608.01.T01 MTR_1g097840 28.889 225 141 8 60 282 78 285 3.10e-13 68.9
MsG0480018608.01.T01 MTR_4g006730 29.609 179 111 5 93 270 22 186 5.59e-13 67.0
MsG0480018608.01.T01 MTR_4g006630 29.609 179 111 5 93 270 22 186 5.87e-13 67.0
MsG0480018608.01.T01 MTR_2g017620 31.928 166 101 4 105 270 3 156 1.18e-12 65.9
MsG0480018608.01.T01 MTR_1g070385 26.180 233 136 7 53 275 59 265 4.60e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018608.01.T01 AT4G00430 85.467 289 39 1 1 289 1 286 0.0 511
MsG0480018608.01.T01 AT2G45960 84.083 289 42 1 1 289 1 285 0.0 506
MsG0480018608.01.T01 AT3G61430 84.083 289 42 1 1 289 1 285 2.96e-177 490
MsG0480018608.01.T01 AT3G61430 84.083 289 42 1 1 289 1 285 2.96e-177 490
MsG0480018608.01.T01 AT1G01620 84.083 289 42 1 1 289 1 285 1.58e-176 488
MsG0480018608.01.T01 AT4G23400 84.083 289 43 1 1 289 1 286 4.07e-175 485
MsG0480018608.01.T01 AT2G45960 83.784 259 38 1 1 259 1 255 2.13e-162 452
MsG0480018608.01.T01 AT2G45960 83.784 259 38 1 1 259 1 255 5.32e-161 450
MsG0480018608.01.T01 AT1G01620 86.854 213 28 0 77 289 1 213 8.18e-138 388
MsG0480018608.01.T01 AT3G53420 71.218 271 72 1 24 288 7 277 1.85e-137 390
MsG0480018608.01.T01 AT3G53420 71.218 271 72 1 24 288 7 277 1.85e-137 390
MsG0480018608.01.T01 AT3G54820 71.984 257 66 1 33 283 15 271 1.97e-137 390
MsG0480018608.01.T01 AT2G37170 71.756 262 68 1 33 288 57 318 1.03e-136 389
MsG0480018608.01.T01 AT2G37170 71.756 262 68 1 33 288 14 275 1.28e-136 387
MsG0480018608.01.T01 AT4G35100 70.722 263 77 0 26 288 8 270 1.41e-136 387
MsG0480018608.01.T01 AT4G35100 70.722 263 77 0 26 288 8 270 1.41e-136 387
MsG0480018608.01.T01 AT2G16850 69.962 263 79 0 26 288 6 268 2.95e-136 386
MsG0480018608.01.T01 AT5G60660 68.773 269 78 1 26 288 9 277 4.05e-134 381
MsG0480018608.01.T01 AT2G39010 67.658 269 81 1 26 288 8 276 2.27e-133 379
MsG0480018608.01.T01 AT2G37180 70.229 262 72 1 33 288 14 275 2.90e-133 379
MsG0480018608.01.T01 AT4G00430 81.106 217 38 1 1 217 1 214 1.28e-128 365
MsG0480018608.01.T01 AT2G39010 63.918 194 64 1 26 213 8 201 2.67e-85 255
MsG0480018608.01.T01 AT1G73190 36.437 247 121 10 56 285 24 251 1.71e-32 121
MsG0480018608.01.T01 AT1G17810 35.294 238 127 6 56 281 24 246 2.38e-30 115
MsG0480018608.01.T01 AT5G47450 37.395 238 127 7 47 277 10 232 8.01e-30 113
MsG0480018608.01.T01 AT3G26520 34.764 233 128 7 56 280 22 238 3.14e-29 112
MsG0480018608.01.T01 AT2G36830 34.061 229 133 6 56 279 21 236 2.62e-28 109
MsG0480018608.01.T01 AT4G01470 33.755 237 143 5 47 280 12 237 3.13e-28 109
MsG0480018608.01.T01 AT3G16240 36.123 227 127 6 56 277 19 232 3.85e-28 108
MsG0480018608.01.T01 AT2G25810 33.878 245 146 7 43 285 6 236 4.53e-26 103
MsG0480018608.01.T01 AT4G17340 35.043 234 138 5 47 277 10 232 9.57e-26 102
MsG0480018608.01.T01 AT3G47440 33.197 244 118 8 56 281 23 239 4.91e-25 100
MsG0480018608.01.T01 AT4G19030 30.328 244 154 6 42 280 39 271 5.10e-20 88.2
MsG0480018608.01.T01 AT1G31885 30.189 265 156 9 17 270 3 249 1.21e-18 84.7
MsG0480018608.01.T01 AT4G18910 27.059 255 176 5 28 280 22 268 6.38e-18 82.4
MsG0480018608.01.T01 AT2G34390 27.240 279 182 8 6 280 2 263 1.40e-16 78.6
MsG0480018608.01.T01 AT5G37820 27.315 216 132 6 59 269 46 241 1.00e-14 73.2
MsG0480018608.01.T01 AT5G37820 27.315 216 132 6 59 269 82 277 1.07e-14 73.6
MsG0480018608.01.T01 AT2G34390 28.889 225 145 6 59 280 9 221 1.21e-14 72.4
MsG0480018608.01.T01 AT1G31885 31.000 200 115 6 79 270 11 195 2.12e-14 72.0
MsG0480018608.01.T01 AT4G10380 28.636 220 137 8 53 270 75 276 2.39e-12 66.6
MsG0480018608.01.T01 AT5G37810 25.676 222 150 5 59 280 46 252 4.09e-12 65.9
MsG0480018608.01.T01 AT3G06100 28.870 239 141 9 56 289 46 260 4.31e-12 65.5
MsG0480018608.01.T01 AT3G06100 28.814 236 139 9 59 289 1 212 2.66e-11 62.8

Find 79 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTAATATATTTAACTAAT+TGG 0.105763 4:+7319641 None:intergenic
CAAGGGATTGCTTGGGCTTT+TGG 0.139339 4:-7322972 MsG0480018608.01.T01:CDS
AACTATAGTTATTACTTATA+AGG 0.255247 4:+7319682 None:intergenic
ATTAGTTAAATATATTAATA+TGG 0.261076 4:-7319638 MsG0480018608.01.T01:three_prime_UTR
TTAATACCAGTCCCTGTAAT+TGG 0.293171 4:+7321695 None:intergenic
TGTGGTGCTGCTGTTGTTAA+GGG 0.295039 4:-7322380 MsG0480018608.01.T01:CDS
AACTGAGGAGCATTTGTTAC+TGG 0.303215 4:+7323001 None:intergenic
TTGGCTACAATTCCAATTAC+AGG 0.327149 4:-7321707 MsG0480018608.01.T01:CDS
TTGTGGTGCTGCTGTTGTTA+AGG 0.328028 4:-7322381 MsG0480018608.01.T01:CDS
AACTCTCCATGCTCAAATAA+AGG 0.345549 4:+7323122 None:intergenic
GTTATTACTTATAAGGCATA+AGG 0.351129 4:+7319689 None:intergenic
ATTAACCCAGCAGTGACATT+TGG 0.351379 4:-7322476 MsG0480018608.01.T01:CDS
AAATCAAACTTATATTGATA+TGG 0.351549 4:-7319542 MsG0480018608.01.T01:three_prime_UTR
TGCTCCTCAGTTGGTGTTCA+AGG 0.355183 4:-7322990 MsG0480018608.01.T01:CDS
CTACATAATTATGCAATGTT+TGG 0.357596 4:-7322411 MsG0480018608.01.T01:CDS
TACATAATTATGCAATGTTT+GGG 0.360536 4:-7322410 MsG0480018608.01.T01:CDS
GCTCTTGTTTATTGTACTGC+TGG 0.363023 4:-7322936 MsG0480018608.01.T01:CDS
ATTAATATATTTAACTAATT+GGG 0.364386 4:+7319642 None:intergenic
ACTAATTGGGAACCCTGTAT+TGG 0.378063 4:+7319655 None:intergenic
TTGGTGTTCAAGGGATTGCT+TGG 0.385841 4:-7322980 MsG0480018608.01.T01:CDS
TATTGTACTGCTGGTATCTC+AGG 0.389148 4:-7322927 MsG0480018608.01.T01:intron
TGAGTCTCTTGCATTTCGTT+TGG 0.397032 4:+7322220 None:intergenic
TTAACCCAGCAGTGACATTT+GGG 0.404206 4:-7322475 MsG0480018608.01.T01:CDS
ACTATAGTTGAATCCAATAC+AGG 0.408493 4:-7319668 MsG0480018608.01.T01:three_prime_UTR
GGCAGGGATTGCTGAGTTTG+TGG 0.419906 4:-7323078 MsG0480018608.01.T01:CDS
GGTGCCAACACTCTCAATAA+AGG 0.420596 4:-7322323 MsG0480018608.01.T01:CDS
TTCTGGGTAGGGCCTTTCAC+TGG 0.421787 4:-7319795 MsG0480018608.01.T01:CDS
CAATGTTTGGGTGCTATTTG+TGG 0.422792 4:-7322398 MsG0480018608.01.T01:CDS
TATAGAGAAAACCAACCAAT+TGG 0.434079 4:-7323203 MsG0480018608.01.T01:CDS
GTGGTAGGGAGTATAATTAA+TGG 0.436244 4:+7323307 None:intergenic
TGGTGTTCAAGGGATTGCTT+GGG 0.441333 4:-7322979 MsG0480018608.01.T01:CDS
AAAAGCCCAAATGTCACTGC+TGG 0.446487 4:+7322470 None:intergenic
TGCCTCACTTTGACTTGAAA+GGG 0.453627 4:+7319727 None:intergenic
GATTGAGCAGCAGTTCCAAT+TGG 0.455197 4:+7323188 None:intergenic
TTGCCTCACTTTGACTTGAA+AGG 0.460204 4:+7319726 None:intergenic
AGCTCCAAGTCCATCACCTA+TGG 0.471965 4:+7322295 None:intergenic
TTATTACTTATAAGGCATAA+GGG 0.480669 4:+7319690 None:intergenic
TATACAACAAGGACCAAGCT+TGG 0.503497 4:-7321643 MsG0480018608.01.T01:CDS
TACTCCATAGGTGATGGACT+TGG 0.512860 4:-7322299 MsG0480018608.01.T01:CDS
GCAGCACCTAGACTTCTAGC+TGG 0.513663 4:+7321671 None:intergenic
GTCTCTCATATTGACGTGGT+TGG 0.520234 4:+7322354 None:intergenic
GCAAGTGCTGCTCCAGTGAA+AGG 0.524235 4:+7319783 None:intergenic
GAGCAGCAGTTCCAATTGGT+TGG 0.527587 4:+7323192 None:intergenic
TTTGGGTGATCAATGTGGTA+GGG 0.529586 4:+7323293 None:intergenic
ACAATTCCAATTACAGGGAC+TGG 0.531107 4:-7321701 MsG0480018608.01.T01:CDS
ATACAACAAGGACCAAGCTT+GGG 0.536922 4:-7321642 MsG0480018608.01.T01:CDS
TGGCTCTGATGACTATTTGA+TGG 0.539363 4:+7319751 None:intergenic
AGAGATGAAGATGTAAGAGT+AGG 0.539683 4:-7323236 MsG0480018608.01.T01:CDS
ATTAACCCAGCTAGAAGTCT+AGG 0.540082 4:-7321677 MsG0480018608.01.T01:CDS
GGACTTGGAGCTGAGATTGT+TGG 0.540230 4:-7322284 MsG0480018608.01.T01:CDS
GCTCCTCAGTTGGTGTTCAA+GGG 0.540750 4:-7322989 MsG0480018608.01.T01:CDS
CACGCAAGCTATCTCTAACT+AGG 0.540778 4:-7322442 MsG0480018608.01.T01:CDS
GTAACCTTTATTGAGAGTGT+TGG 0.540829 4:+7322319 None:intergenic
TGGCTACAATTCCAATTACA+GGG 0.551529 4:-7321706 MsG0480018608.01.T01:CDS
TGCTCAAATAAAGGTGCTGA+AGG 0.551644 4:+7323131 None:intergenic
AAAGGTTACTCCATAGGTGA+TGG 0.553430 4:-7322305 MsG0480018608.01.T01:CDS
CTCAATAAAGGTTACTCCAT+AGG 0.557582 4:-7322311 MsG0480018608.01.T01:CDS
TAACATGGTCATCCCAAGCT+TGG 0.558282 4:+7321630 None:intergenic
TCACTTTGACTTGAAAGGGA+TGG 0.562832 4:+7319731 None:intergenic
TCAGCACCTTTATTTGAGCA+TGG 0.566089 4:-7323128 MsG0480018608.01.T01:CDS
CCACGTCAATATGAGAGACT+TGG 0.574053 4:-7322350 MsG0480018608.01.T01:CDS
AGTAACAAATGCTCCTCAGT+TGG 0.584258 4:-7322999 MsG0480018608.01.T01:CDS
ATAAATCAATTTCACAGTGG+AGG 0.585407 4:+7319612 None:intergenic
AAAGCCCAAATGTCACTGCT+GGG 0.601769 4:+7322471 None:intergenic
CGTCAATATGAGAGACTTGG+TGG 0.601958 4:-7322347 MsG0480018608.01.T01:CDS
ACAGCAAATCCAATTGGCAG+TGG 0.605076 4:+7321743 None:intergenic
AGCATGGAGAGTTATCATCA+TGG 0.618672 4:-7323112 MsG0480018608.01.T01:CDS
GTAGGGAGTATAATTAATGG+TGG 0.624821 4:+7323310 None:intergenic
CAGCACCTAGACTTCTAGCT+GGG 0.629681 4:+7321672 None:intergenic
CTATAGTTGAATCCAATACA+GGG 0.633485 4:-7319667 MsG0480018608.01.T01:three_prime_UTR
ATCCCTTTCAAGTCAAAGTG+AGG 0.643751 4:-7319729 MsG0480018608.01.T01:exon
TGATGCTAAAGACTACAAAG+AGG 0.654304 4:-7323156 MsG0480018608.01.T01:CDS
TATATTGATATGGTAGTGTG+TGG 0.656116 4:-7319532 MsG0480018608.01.T01:three_prime_UTR
AATCCCTTGAACACCAACTG+AGG 0.657135 4:+7322986 None:intergenic
CCAAGTCTCTCATATTGACG+TGG 0.671854 4:+7322350 None:intergenic
TGCTGCTCTTATATACAACA+AGG 0.684264 4:-7321654 MsG0480018608.01.T01:CDS
CAAGAACTAGAAACACACAA+TGG 0.686667 4:-7323264 MsG0480018608.01.T01:exon
CAATATGAGAGACTTGGTGG+TGG 0.725332 4:-7322344 MsG0480018608.01.T01:CDS
TAAATAAATCAATTTCACAG+TGG 0.730441 4:+7319609 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTATATTTTTTA+AGG + Chr4:7320031-7320050 None:intergenic 0.0%
!! ACTTGATTAATTAATTATTT+GGG - Chr4:7321730-7321749 MsG0480018608.01.T01:CDS 10.0%
!! TACTTGATTAATTAATTATT+TGG - Chr4:7321729-7321748 MsG0480018608.01.T01:CDS 10.0%
!!! AATCAATGAAATTAAATTTT+TGG + Chr4:7321373-7321392 None:intergenic 10.0%
!!! ACTTGATTAATTTTATTTTT+TGG - Chr4:7321695-7321714 MsG0480018608.01.T01:CDS 10.0%
!!! ATTTTTGTTTCTTTATATAA+CGG - Chr4:7319785-7319804 MsG0480018608.01.T01:CDS 10.0%
!!! TAAAAAAATTGTTATGTTTT+AGG + Chr4:7321343-7321362 None:intergenic 10.0%
!! AAATCAAACTTATATTGATA+TGG - Chr4:7323294-7323313 MsG0480018608.01.T01:five_prime_UTR 15.0%
!! AACTATAGTTATTACTTATA+AGG + Chr4:7323157-7323176 None:intergenic 15.0%
!! ATTAATTAATCAAGTAGTAA+TGG + Chr4:7321725-7321744 None:intergenic 15.0%
!! CTTGATTAATTAATTATTTG+GGG - Chr4:7321731-7321750 MsG0480018608.01.T01:CDS 15.0%
!! TATGATATATTAGTAAGATT+TGG + Chr4:7320953-7320972 None:intergenic 15.0%
!! TTAAAATGATTTCTAACATT+AGG + Chr4:7321464-7321483 None:intergenic 15.0%
!!! AGTGAATTAACATTTTTTTT+TGG + Chr4:7320805-7320824 None:intergenic 15.0%
!!! ATGAATGAACATTTTTATTT+AGG + Chr4:7320656-7320675 None:intergenic 15.0%
!!! GTGAATTAACATTTTTTTTT+GGG + Chr4:7320804-7320823 None:intergenic 15.0%
!!! TCCATAATCTAATTTTATTT+GGG - Chr4:7321260-7321279 MsG0480018608.01.T01:intron 15.0%
!!! TTCCATAATCTAATTTTATT+TGG - Chr4:7321259-7321278 MsG0480018608.01.T01:intron 15.0%
!! ACCTATACTAAATAATTAAG+GGG + Chr4:7322933-7322952 None:intergenic 20.0%
!! AGAAAGATTTAATATACTGT+AGG + Chr4:7320061-7320080 None:intergenic 20.0%
!! AGACCTATACTAAATAATTA+AGG + Chr4:7322935-7322954 None:intergenic 20.0%
!! ATGATTCATAACTATTGAAA+TGG - Chr4:7321004-7321023 MsG0480018608.01.T01:intron 20.0%
!! ATTGTTACATTATCAATCTT+AGG + Chr4:7322233-7322252 None:intergenic 20.0%
!! GAAAGATTTAATATACTGTA+GGG + Chr4:7320060-7320079 None:intergenic 20.0%
!! GACCTATACTAAATAATTAA+GGG + Chr4:7322934-7322953 None:intergenic 20.0%
!! TAAATAAATCAATTTCACAG+TGG + Chr4:7323230-7323249 None:intergenic 20.0%
!! TACATAATTATGCAATGTTT+GGG - Chr4:7320426-7320445 MsG0480018608.01.T01:intron 20.0%
!! TAGGATCAATACTAAAAAAT+GGG + Chr4:7322214-7322233 None:intergenic 20.0%
!! TCCCAAATAAAATTAGATTA+TGG + Chr4:7321264-7321283 None:intergenic 20.0%
!! TTAGGATCAATACTAAAAAA+TGG + Chr4:7322215-7322234 None:intergenic 20.0%
!! TTATTACTTATAAGGCATAA+GGG + Chr4:7323149-7323168 None:intergenic 20.0%
!!! TAACTCACATTACATTATTT+TGG - Chr4:7323007-7323026 MsG0480018608.01.T01:CDS 20.0%
!!! TCTAGTTCTTGTAATTTTTT+GGG + Chr4:7319563-7319582 None:intergenic 20.0%
!!! TTCTAGTTCTTGTAATTTTT+TGG + Chr4:7319564-7319583 None:intergenic 20.0%
! AAAGATGAAAAAGACTAACA+TGG + Chr4:7321224-7321243 None:intergenic 25.0%
! ACAAGAGACACAATTATTAT+AGG + Chr4:7322979-7322998 None:intergenic 25.0%
! AGGATCAATACTAAAAAATG+GGG + Chr4:7322213-7322232 None:intergenic 25.0%
! ATAATGTAACAATACTTGTG+AGG - Chr4:7322240-7322259 MsG0480018608.01.T01:CDS 25.0%
! CTACATAATTATGCAATGTT+TGG - Chr4:7320425-7320444 MsG0480018608.01.T01:intron 25.0%
! GATATGTTAGCATAAATCTA+AGG + Chr4:7320310-7320329 None:intergenic 25.0%
! GTTATTACTTATAAGGCATA+AGG + Chr4:7323150-7323169 None:intergenic 25.0%
! TAATGTAACAATACTTGTGA+GGG - Chr4:7322241-7322260 MsG0480018608.01.T01:CDS 25.0%
! TCCCCTTAATTATTTAGTAT+AGG - Chr4:7322929-7322948 MsG0480018608.01.T01:CDS 25.0%
! TTACAATTTATCTGCATTCA+GGG - Chr4:7322140-7322159 MsG0480018608.01.T01:intron 25.0%
! TTACCAATTATCCTACTATA+CGG - Chr4:7321497-7321516 MsG0480018608.01.T01:intron 25.0%
! TTTAAGGACTAAATTGAAGT+GGG + Chr4:7320015-7320034 None:intergenic 25.0%
! TTTACAATTTATCTGCATTC+AGG - Chr4:7322139-7322158 MsG0480018608.01.T01:intron 25.0%
!! AACTTTAGTTCATTTATCTC+CGG + Chr4:7321599-7321618 None:intergenic 25.0%
!! AATATCTAAAACCGTATAGT+AGG + Chr4:7321511-7321530 None:intergenic 25.0%
!! ATCATCATGGTCTTTTTATA+GGG - Chr4:7319737-7319756 MsG0480018608.01.T01:CDS 25.0%
!! CATTTGAATTACTCAGATTT+TGG - Chr4:7321068-7321087 MsG0480018608.01.T01:intron 25.0%
!! GGCTAGAATTTTTCTTTTTA+AGG + Chr4:7320767-7320786 None:intergenic 25.0%
!! TATCATCATGGTCTTTTTAT+AGG - Chr4:7319736-7319755 MsG0480018608.01.T01:CDS 25.0%
!!! ACATTTTTATTTAGGCTTAC+AGG + Chr4:7320648-7320667 None:intergenic 25.0%
!!! ATAACGGTTTTAACTGTTAT+GGG - Chr4:7319801-7319820 MsG0480018608.01.T01:CDS 25.0%
!!! TATAACGGTTTTAACTGTTA+TGG - Chr4:7319800-7319819 MsG0480018608.01.T01:CDS 25.0%
!!! TTTTAAGGACTAAATTGAAG+TGG + Chr4:7320016-7320035 None:intergenic 25.0%
AAAAAGACAGCAAATCCAAT+TGG + Chr4:7321102-7321121 None:intergenic 30.0%
AAACCGTATAGTAGGATAAT+TGG + Chr4:7321503-7321522 None:intergenic 30.0%
AAGATTCAAAGCAACAAATG+GGG - Chr4:7322424-7322443 MsG0480018608.01.T01:CDS 30.0%
AATGTAACAATACTTGTGAG+GGG - Chr4:7322242-7322261 MsG0480018608.01.T01:CDS 30.0%
ACATCGCATAATATATGTAG+GGG - Chr4:7320707-7320726 MsG0480018608.01.T01:intron 30.0%
ACTAACAAAGTCTACATTCA+GGG - Chr4:7322618-7322637 MsG0480018608.01.T01:intron 30.0%
ACTAACAAAGTCTACATTCA+GGG + Chr4:7322637-7322618 None:intergenic 30.0%
ACTAACAGAGTTTACATTCA+GGG - Chr4:7322831-7322850 MsG0480018608.01.T01:intron 30.0%
ACTAACAGAGTTTACATTCA+GGG + Chr4:7322850-7322831 None:intergenic 30.0%
ACTAATGAAGTTTGCATTCA+TGG - Chr4:7322586-7322605 MsG0480018608.01.T01:intron 30.0%
ACTATAGTTGAATCCAATAC+AGG - Chr4:7323168-7323187 MsG0480018608.01.T01:CDS 30.0%
ATAAATCAATTTCACAGTGG+AGG + Chr4:7323227-7323246 None:intergenic 30.0%
CTATAGTTGAATCCAATACA+GGG - Chr4:7323169-7323188 MsG0480018608.01.T01:CDS 30.0%
GAAGATTCAAAGCAACAAAT+GGG - Chr4:7322423-7322442 MsG0480018608.01.T01:CDS 30.0%
GACATCGCATAATATATGTA+GGG - Chr4:7320706-7320725 MsG0480018608.01.T01:intron 30.0%
TATAGAGAAAACCAACCAAT+TGG - Chr4:7319633-7319652 MsG0480018608.01.T01:three_prime_UTR 30.0%
TCCTCTAATAAAGTCACAAT+CGG + Chr4:7322301-7322320 None:intergenic 30.0%
TGAAGATTCAAAGCAACAAA+TGG - Chr4:7322422-7322441 MsG0480018608.01.T01:CDS 30.0%
TGACTTTATTAGAGGAGATA+AGG - Chr4:7322305-7322324 MsG0480018608.01.T01:CDS 30.0%
TTGCAATTACTCTTCATTCA+TGG + Chr4:7322497-7322516 None:intergenic 30.0%
TTGCAATTTATCTGCATTCA+GGG - Chr4:7322647-7322666 MsG0480018608.01.T01:intron 30.0%
TTGCAATTTATCTGCATTCA+GGG + Chr4:7322666-7322647 None:intergenic 30.0%
TTTGATACAGTCACACAATT+TGG + Chr4:7320180-7320199 None:intergenic 30.0%
TTTGCAATTTATCTGCATTC+AGG - Chr4:7322646-7322665 MsG0480018608.01.T01:intron 30.0%
TTTGCAATTTATCTGCATTC+AGG + Chr4:7322665-7322646 None:intergenic 30.0%
! ACGTGTCTTTTTACTAATGT+AGG - Chr4:7320330-7320349 MsG0480018608.01.T01:intron 30.0%
! GCACATATTGATTGAACAAT+TGG + Chr4:7319948-7319967 None:intergenic 30.0%
! TAGAAGTCCAAACTTTTTGA+AGG + Chr4:7320217-7320236 None:intergenic 30.0%
! TATATTGATATGGTAGTGTG+TGG - Chr4:7323304-7323323 MsG0480018608.01.T01:five_prime_UTR 30.0%
! TGAACACTTTGAAAAGTGAA+GGG + Chr4:7320281-7320300 None:intergenic 30.0%
! TGTCTTTTTACTAATGTAGG+TGG - Chr4:7320333-7320352 MsG0480018608.01.T01:intron 30.0%
! TTGAACACTTTGAAAAGTGA+AGG + Chr4:7320282-7320301 None:intergenic 30.0%
! TTTTGTGTAGTATCATTGCA+TGG + Chr4:7320898-7320917 None:intergenic 30.0%
!! CTTTTTAAGGAGAATAAGCA+GGG + Chr4:7320754-7320773 None:intergenic 30.0%
!! TCTTTTTAAGGAGAATAAGC+AGG + Chr4:7320755-7320774 None:intergenic 30.0%
!! TTACGTTAGTCCTTTTGATT+CGG - Chr4:7321391-7321410 MsG0480018608.01.T01:intron 30.0%
!!! AATTGGATTTGCTGTCTTTT+TGG - Chr4:7321101-7321120 MsG0480018608.01.T01:intron 30.0%
!!! AATTTTTTGGGTGATCAATG+TGG + Chr4:7319551-7319570 None:intergenic 30.0%
!!! ATTACATTATTTTGGTGCAG+TGG - Chr4:7323015-7323034 MsG0480018608.01.T01:CDS 30.0%
AACAGACCTATTTAACGTCA+GGG - Chr4:7322799-7322818 MsG0480018608.01.T01:intron 35.0%
AACAGACCTATTTAACGTCA+GGG + Chr4:7322818-7322799 None:intergenic 35.0%
AACTCTCCATGCTCAAATAA+AGG + Chr4:7319717-7319736 None:intergenic 35.0%
ACCAAATTCACCGAATCAAA+AGG + Chr4:7321404-7321423 None:intergenic 35.0%
ACCGATTGTGACTTTATTAG+AGG - Chr4:7322297-7322316 MsG0480018608.01.T01:CDS 35.0%
ACTAACAGAGTCTACATTCA+GGG - Chr4:7322554-7322573 MsG0480018608.01.T01:intron 35.0%
ACTAACGAAGTTTGCATTCA+GGG + Chr4:7322051-7322070 None:intergenic 35.0%
AGAGATGAAGATGTAAGAGT+AGG - Chr4:7319600-7319619 MsG0480018608.01.T01:three_prime_UTR 35.0%
ATTCTAGCCACTAAGCTATT+TGG - Chr4:7320778-7320797 MsG0480018608.01.T01:intron 35.0%
ATTGTAAAACAGTCCCTACA+TGG + Chr4:7322127-7322146 None:intergenic 35.0%
CAAGAACTAGAAACACACAA+TGG - Chr4:7319572-7319591 MsG0480018608.01.T01:three_prime_UTR 35.0%
CTCAATAAAGGTTACTCCAT+AGG - Chr4:7320525-7320544 MsG0480018608.01.T01:intron 35.0%
GACTAACAAAGTCTACATTC+AGG - Chr4:7322617-7322636 MsG0480018608.01.T01:intron 35.0%
GACTAACAAAGTCTACATTC+AGG + Chr4:7322636-7322617 None:intergenic 35.0%
GACTAACAGAGTTTACATTC+AGG - Chr4:7322830-7322849 MsG0480018608.01.T01:intron 35.0%
GACTAACAGAGTTTACATTC+AGG + Chr4:7322849-7322830 None:intergenic 35.0%
GGACATCGCATAATATATGT+AGG - Chr4:7320705-7320724 MsG0480018608.01.T01:intron 35.0%
GGACTTGTCAATCTTGATAA+CGG - Chr4:7320153-7320172 MsG0480018608.01.T01:intron 35.0%
TAACAGACCTATTTAACGTC+AGG - Chr4:7322798-7322817 MsG0480018608.01.T01:intron 35.0%
TAACAGACCTATTTAACGTC+AGG + Chr4:7322817-7322798 None:intergenic 35.0%
TGATGCTAAAGACTACAAAG+AGG - Chr4:7319680-7319699 MsG0480018608.01.T01:three_prime_UTR 35.0%
TGCTGCTCTTATATACAACA+AGG - Chr4:7321182-7321201 MsG0480018608.01.T01:intron 35.0%
TGGCTACAATTCCAATTACA+GGG - Chr4:7321130-7321149 MsG0480018608.01.T01:intron 35.0%
TTAATACCAGTCCCTGTAAT+TGG + Chr4:7321144-7321163 None:intergenic 35.0%
TTATGTTGGCCAACTTCAAT+CGG + Chr4:7322360-7322379 None:intergenic 35.0%
TTCCATGCCTTCAAAAAGTT+TGG - Chr4:7320207-7320226 MsG0480018608.01.T01:intron 35.0%
TTGAAGTTTCTCTGCATTCA+GGG - Chr4:7322860-7322879 MsG0480018608.01.T01:intron 35.0%
TTGAAGTTTCTCTGCATTCA+GGG + Chr4:7322879-7322860 None:intergenic 35.0%
TTGGCTACAATTCCAATTAC+AGG - Chr4:7321129-7321148 MsG0480018608.01.T01:intron 35.0%
! GTAACCTTTATTGAGAGTGT+TGG + Chr4:7320520-7320539 None:intergenic 35.0%
! GTAGGGAGTATAATTAATGG+TGG + Chr4:7319529-7319548 None:intergenic 35.0%
! GTGGTAGGGAGTATAATTAA+TGG + Chr4:7319532-7319551 None:intergenic 35.0%
! TTTGAAGTTTCTCTGCATTC+AGG - Chr4:7322859-7322878 MsG0480018608.01.T01:intron 35.0%
! TTTGAAGTTTCTCTGCATTC+AGG + Chr4:7322878-7322859 None:intergenic 35.0%
!!! TCCTTTTGATTCGGTGAATT+TGG - Chr4:7321400-7321419 MsG0480018608.01.T01:intron 35.0%
AAAGGTTACTCCATAGGTGA+TGG - Chr4:7320531-7320550 MsG0480018608.01.T01:intron 40.0%
ACAATTCCAATTACAGGGAC+TGG - Chr4:7321135-7321154 MsG0480018608.01.T01:intron 40.0%
ACATAGAGGTCCACTTATGT+TGG + Chr4:7322374-7322393 None:intergenic 40.0%
ACTAACGGAGTCTACATTCA+GGG + Chr4:7322083-7322102 None:intergenic 40.0%
ACTAATTCCCCAATCTTACG+TGG + Chr4:7321927-7321946 None:intergenic 40.0%
ACTAATTGGGAACCCTGTAT+TGG + Chr4:7323184-7323203 None:intergenic 40.0%
AGCATGGAGAGTTATCATCA+TGG - Chr4:7319724-7319743 MsG0480018608.01.T01:exon 40.0%
AGTAACAAATGCTCCTCAGT+TGG - Chr4:7319837-7319856 MsG0480018608.01.T01:intron 40.0%
ATAACTGCCACGTAAGATTG+GGG - Chr4:7321917-7321936 MsG0480018608.01.T01:intron 40.0%
ATACAACAAGGACCAAGCTT+GGG - Chr4:7321194-7321213 MsG0480018608.01.T01:intron 40.0%
ATTAACCCAGCAGTGACATT+TGG - Chr4:7320360-7320379 MsG0480018608.01.T01:intron 40.0%
ATTAACCCAGCTAGAAGTCT+AGG - Chr4:7321159-7321178 MsG0480018608.01.T01:intron 40.0%
ATTGCAAAACAGTCACTGCA+TGG - Chr4:7322510-7322529 MsG0480018608.01.T01:intron 40.0%
CATAATATATGTAGGGGTCG+GGG - Chr4:7320713-7320732 MsG0480018608.01.T01:intron 40.0%
CGCATAATATATGTAGGGGT+CGG - Chr4:7320711-7320730 MsG0480018608.01.T01:intron 40.0%
CTTGGCAAAACATAAACACG+TGG + Chr4:7322724-7322743 None:intergenic 40.0%
GACATCAAACCGATTGAAGT+TGG - Chr4:7322348-7322367 MsG0480018608.01.T01:CDS 40.0%
GACGAATATCTTCCGATTCA+GGG - Chr4:7322678-7322697 MsG0480018608.01.T01:intron 40.0%
GACTAACAGAGTCTACATTC+AGG - Chr4:7322553-7322572 MsG0480018608.01.T01:intron 40.0%
GACTAACGAAGTTTGCATTC+AGG + Chr4:7322052-7322071 None:intergenic 40.0%
GACTTACCAATGTCAAGACT+CGG - Chr4:7320132-7320151 MsG0480018608.01.T01:intron 40.0%
GAGTTAAAGTCGAACATTGG+TGG + Chr4:7320112-7320131 None:intergenic 40.0%
GATAACTGCCACGTAAGATT+GGG - Chr4:7321916-7321935 MsG0480018608.01.T01:intron 40.0%
GATTGTTGCATTGGACATAG+AGG + Chr4:7322388-7322407 None:intergenic 40.0%
GCATAATATATGTAGGGGTC+GGG - Chr4:7320712-7320731 MsG0480018608.01.T01:intron 40.0%
GTCGAGTTAAAGTCGAACAT+TGG + Chr4:7320115-7320134 None:intergenic 40.0%
TACCAACTGAGTTAAGCTCA+CGG + Chr4:7320684-7320703 None:intergenic 40.0%
TATACAACAAGGACCAAGCT+TGG - Chr4:7321193-7321212 MsG0480018608.01.T01:intron 40.0%
TATTGTACTGCTGGTATCTC+AGG - Chr4:7319909-7319928 MsG0480018608.01.T01:intron 40.0%
TCACTGCATGGTCAATTTCA+GGG - Chr4:7322522-7322541 MsG0480018608.01.T01:intron 40.0%
TCAGGGACTAAAGTGACTAA+CGG + Chr4:7322207-7322188 None:intergenic 40.0%
TCCAATGCAACAATCTAAGC+TGG - Chr4:7322393-7322412 MsG0480018608.01.T01:CDS 40.0%
TCCAGCTTAGATTGTTGCAT+TGG + Chr4:7322397-7322416 None:intergenic 40.0%
TCCCTACATGGTCAATTTCA+GGG + Chr4:7322115-7322134 None:intergenic 40.0%
TCCCTGAAATTGACCATGTA+GGG - Chr4:7322111-7322130 MsG0480018608.01.T01:intron 40.0%
TGAAGGGTGATTACTCTACT+CGG + Chr4:7320265-7320284 None:intergenic 40.0%
TGACGAATATCTTCCGATTC+AGG - Chr4:7322677-7322696 MsG0480018608.01.T01:intron 40.0%
TGAGTCTCTTGCATTTCGTT+TGG + Chr4:7320619-7320638 None:intergenic 40.0%
TGATAACTGCCACGTAAGAT+TGG - Chr4:7321915-7321934 MsG0480018608.01.T01:intron 40.0%
TTAACCCAGCAGTGACATTT+GGG - Chr4:7320361-7320380 MsG0480018608.01.T01:intron 40.0%
TTGAAGTTGGCCAACATAAG+TGG - Chr4:7322361-7322380 MsG0480018608.01.T01:CDS 40.0%
TTTCGTCCCTGACGTTAAAT+AGG - Chr4:7321856-7321875 MsG0480018608.01.T01:intron 40.0%
TTTCGTCCCTGACGTTAAAT+AGG + Chr4:7321875-7321856 None:intergenic 40.0%
TTTGGGTGATCAATGTGGTA+GGG + Chr4:7319546-7319565 None:intergenic 40.0%
! AACCCTAGTACTTTGAGAAC+CGG - Chr4:7321577-7321596 MsG0480018608.01.T01:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+CGG - Chr4:7321758-7321777 MsG0480018608.01.T01:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+CGG + Chr4:7321777-7321758 None:intergenic 40.0%
! AGTCACTTTAGTCCCTGAAT+GGG - Chr4:7321758-7321777 MsG0480018608.01.T01:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+GGG + Chr4:7321777-7321758 None:intergenic 40.0%
! AGTGACATTTGGGCTTTTCT+TGG - Chr4:7320371-7320390 MsG0480018608.01.T01:intron 40.0%
! ATCCCTTTCAAGTCAAAGTG+AGG - Chr4:7323107-7323126 MsG0480018608.01.T01:CDS 40.0%
! CATGGTCTTTTTATAGGGCA+GGG - Chr4:7319742-7319761 MsG0480018608.01.T01:CDS 40.0%
! GCTCTTGTTTATTGTACTGC+TGG - Chr4:7319900-7319919 MsG0480018608.01.T01:intron 40.0%
! TAGTCACTTTAGTCCCTGAA+TGG - Chr4:7321757-7321776 MsG0480018608.01.T01:intron 40.0%
! TAGTCACTTTAGTCCCTGAA+TGG + Chr4:7321776-7321757 None:intergenic 40.0%
! TCAGCACCTTTATTTGAGCA+TGG - Chr4:7319708-7319727 MsG0480018608.01.T01:three_prime_UTR 40.0%
! TCATGGTCTTTTTATAGGGC+AGG - Chr4:7319741-7319760 MsG0480018608.01.T01:CDS 40.0%
! TGAGCTTAACTCAGTTGGTA+GGG - Chr4:7320684-7320703 MsG0480018608.01.T01:intron 40.0%
! TTTTGGGCCAAATAGCTTAG+TGG + Chr4:7320788-7320807 None:intergenic 40.0%
!! AACTGAGGAGCATTTGTTAC+TGG + Chr4:7319838-7319857 None:intergenic 40.0%
!! CAATGTTTGGGTGCTATTTG+TGG - Chr4:7320438-7320457 MsG0480018608.01.T01:intron 40.0%
!! GTCCAAACTTTTTGAAGGCA+TGG + Chr4:7320212-7320231 None:intergenic 40.0%
!! TCACTTTGACTTGAAAGGGA+TGG + Chr4:7323108-7323127 None:intergenic 40.0%
!! TGCCTCACTTTGACTTGAAA+GGG + Chr4:7323112-7323131 None:intergenic 40.0%
!! TGCTCAAATAAAGGTGCTGA+AGG + Chr4:7319708-7319727 None:intergenic 40.0%
!! TGCTGTCTTTTTGGTGCATT+TGG - Chr4:7321110-7321129 MsG0480018608.01.T01:intron 40.0%
!! TGGCTCTGATGACTATTTGA+TGG + Chr4:7323088-7323107 None:intergenic 40.0%
!! TTGCCTCACTTTGACTTGAA+AGG + Chr4:7323113-7323132 None:intergenic 40.0%
!! TTTGGTGCAGTGGATTTTCT+GGG - Chr4:7323025-7323044 MsG0480018608.01.T01:CDS 40.0%
!! TTTTGGGTGATCAATGTGGT+AGG + Chr4:7319547-7319566 None:intergenic 40.0%
!! TTTTGGTGCAGTGGATTTTC+TGG - Chr4:7323024-7323043 MsG0480018608.01.T01:CDS 40.0%
AAAAGCCCAAATGTCACTGC+TGG + Chr4:7320369-7320388 None:intergenic 45.0%
AAAGCCCAAATGTCACTGCT+GGG + Chr4:7320368-7320387 None:intergenic 45.0%
AATCCCTTGAACACCAACTG+AGG + Chr4:7319853-7319872 None:intergenic 45.0%
ACAAGTCCGAGTCTTGACAT+TGG + Chr4:7320141-7320160 None:intergenic 45.0%
ACAGCAAATCCAATTGGCAG+TGG + Chr4:7321096-7321115 None:intergenic 45.0%
CACGCAAGCTATCTCTAACT+AGG - Chr4:7320394-7320413 MsG0480018608.01.T01:intron 45.0%
CCAAGTCTCTCATATTGACG+TGG + Chr4:7320489-7320508 None:intergenic 45.0%
CCACGTCAATATGAGAGACT+TGG - Chr4:7320486-7320505 MsG0480018608.01.T01:intron 45.0%
CGTCAATATGAGAGACTTGG+TGG - Chr4:7320489-7320508 MsG0480018608.01.T01:intron 45.0%
GACGAATCTCTTCCGATTCA+GGG + Chr4:7321959-7321978 None:intergenic 45.0%
GACGATTCTTCTCCCATTCA+GGG + Chr4:7322466-7322485 None:intergenic 45.0%
GACTAACGGAGTCTACATTC+AGG + Chr4:7322084-7322103 None:intergenic 45.0%
GATTGAGCAGCAGTTCCAAT+TGG + Chr4:7319651-7319670 None:intergenic 45.0%
GGTGCCAACACTCTCAATAA+AGG - Chr4:7320513-7320532 MsG0480018608.01.T01:intron 45.0%
GTCACTGCATGGTCAATTTC+AGG - Chr4:7322521-7322540 MsG0480018608.01.T01:intron 45.0%
GTCCCTACATGGTCAATTTC+AGG + Chr4:7322116-7322135 None:intergenic 45.0%
GTCCCTGAAATTGACCATGT+AGG - Chr4:7322110-7322129 MsG0480018608.01.T01:intron 45.0%
GTCTCTCATATTGACGTGGT+TGG + Chr4:7320485-7320504 None:intergenic 45.0%
GTGAGCTTAACTCAGTTGGT+AGG - Chr4:7320683-7320702 MsG0480018608.01.T01:intron 45.0%
TAACATGGTCATCCCAAGCT+TGG + Chr4:7321209-7321228 None:intergenic 45.0%
TAGGTCTGTTAACGATGACG+TGG - Chr4:7321875-7321894 MsG0480018608.01.T01:intron 45.0%
TAGGTCTGTTAACGATGACG+TGG + Chr4:7321894-7321875 None:intergenic 45.0%
TGACGAATCTCTTCCGATTC+AGG + Chr4:7321960-7321979 None:intergenic 45.0%
TGACGATTCTTCTCCCATTC+AGG + Chr4:7322467-7322486 None:intergenic 45.0%
TGCCAAGTCACAATCTTACG+TGG - Chr4:7322737-7322756 MsG0480018608.01.T01:intron 45.0%
TGCCACGTAAGATTGTGACT+TGG + Chr4:7322742-7322761 None:intergenic 45.0%
TGGTGTTCAAGGGATTGCTT+GGG - Chr4:7319857-7319876 MsG0480018608.01.T01:intron 45.0%
! AAGTCACAATCGGTTTCGCT+CGG + Chr4:7322291-7322310 None:intergenic 45.0%
! CTCCGGTTCTCAAAGTACTA+GGG + Chr4:7321582-7321601 None:intergenic 45.0%
! TCTCCGGTTCTCAAAGTACT+AGG + Chr4:7321583-7321602 None:intergenic 45.0%
! TTGGTGTTCAAGGGATTGCT+TGG - Chr4:7319856-7319875 MsG0480018608.01.T01:intron 45.0%
!! ATTTTGGCACCACTGCCAAT+TGG - Chr4:7321084-7321103 MsG0480018608.01.T01:intron 45.0%
!! CAATATGAGAGACTTGGTGG+TGG - Chr4:7320492-7320511 MsG0480018608.01.T01:intron 45.0%
!! TACTCCATAGGTGATGGACT+TGG - Chr4:7320537-7320556 MsG0480018608.01.T01:intron 45.0%
!! TGCAGTGGATTTTCTGGGTA+GGG - Chr4:7323030-7323049 MsG0480018608.01.T01:CDS 45.0%
!! TGTGGTGCTGCTGTTGTTAA+GGG - Chr4:7320456-7320475 MsG0480018608.01.T01:intron 45.0%
!! TTGTGGTGCTGCTGTTGTTA+AGG - Chr4:7320455-7320474 MsG0480018608.01.T01:intron 45.0%
!! ATTAATATATTTAACTAATT+GGG + Chr4:7323197-7323216 None:intergenic 5.0%
!! ATTAGTTAAATATATTAATA+TGG - Chr4:7323198-7323217 MsG0480018608.01.T01:CDS 5.0%
!! TAATTATATATTTAACATAA+AGG + Chr4:7320838-7320857 None:intergenic 5.0%
!! TATTAATATATTTAACTAAT+TGG + Chr4:7323198-7323217 None:intergenic 5.0%
AGCTCCAAGTCCATCACCTA+TGG + Chr4:7320544-7320563 None:intergenic 50.0%
CACCGTGAGCTTAACTCAGT+TGG - Chr4:7320679-7320698 MsG0480018608.01.T01:intron 50.0%
GACGAATCGCTTCCCATTCA+GGG - Chr4:7322891-7322910 MsG0480018608.01.T01:intron 50.0%
GACGAATCGCTTCCCATTCA+GGG + Chr4:7322910-7322891 None:intergenic 50.0%
GACGACTCTCTTCCGATTCA+GGG - Chr4:7322171-7322190 MsG0480018608.01.T01:intron 50.0%
GAGCAGCAGTTCCAATTGGT+TGG + Chr4:7319647-7319666 None:intergenic 50.0%
GGACTTGGAGCTGAGATTGT+TGG - Chr4:7320552-7320571 MsG0480018608.01.T01:intron 50.0%
GTCTGTTAACGATGACGTGG+CGG - Chr4:7321878-7321897 MsG0480018608.01.T01:intron 50.0%
GTCTGTTAACGATGACGTGG+CGG + Chr4:7321897-7321878 None:intergenic 50.0%
TGACGAATCGCTTCCCATTC+AGG - Chr4:7322890-7322909 MsG0480018608.01.T01:intron 50.0%
TGACGAATCGCTTCCCATTC+AGG + Chr4:7322909-7322890 None:intergenic 50.0%
TGACGACTCTCTTCCGATTC+AGG - Chr4:7322170-7322189 MsG0480018608.01.T01:intron 50.0%
! CAAGGGATTGCTTGGGCTTT+TGG - Chr4:7319864-7319883 MsG0480018608.01.T01:intron 50.0%
! CAGCACCTAGACTTCTAGCT+GGG + Chr4:7321167-7321186 None:intergenic 50.0%
! GAGAATAAGCAGGGTGTTCG+AGG + Chr4:7320745-7320764 None:intergenic 50.0%
! GCTCCTCAGTTGGTGTTCAA+GGG - Chr4:7319847-7319866 MsG0480018608.01.T01:intron 50.0%
! TGCTCCTCAGTTGGTGTTCA+AGG - Chr4:7319846-7319865 MsG0480018608.01.T01:intron 50.0%
!! GTGCAGTGGATTTTCTGGGT+AGG - Chr4:7323029-7323048 MsG0480018608.01.T01:CDS 50.0%
GCAGCACCTAGACTTCTAGC+TGG + Chr4:7321168-7321187 None:intergenic 55.0%
GGCAGGGATTGCTGAGTTTG+TGG - Chr4:7319758-7319777 MsG0480018608.01.T01:CDS 55.0%
TTCTGGGTAGGGCCTTTCAC+TGG - Chr4:7323041-7323060 MsG0480018608.01.T01:CDS 55.0%
! GCAAGTGCTGCTCCAGTGAA+AGG + Chr4:7323056-7323075 None:intergenic 55.0%
! GGGATTGCTTGGGCTTTTGG+TGG - Chr4:7319867-7319886 MsG0480018608.01.T01:intron 55.0%
CGATGACGTGGCGGCTGATG+TGG - Chr4:7321887-7321906 MsG0480018608.01.T01:intron 65.0%
CGATGACGTGGCGGCTGATG+TGG + Chr4:7321906-7321887 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 7319525 7323333 7319525 ID=MsG0480018608.01;Name=MsG0480018608.01
Chr4 mRNA 7319525 7323333 7319525 ID=MsG0480018608.01.T01;Parent=MsG0480018608.01;Name=MsG0480018608.01.T01;_AED=0.36;_eAED=0.36;_QI=66|1|1|1|1|1|4|206|289
Chr4 exon 7319525 7319823 7319525 ID=MsG0480018608.01.T01:exon:2414;Parent=MsG0480018608.01.T01
Chr4 exon 7321634 7321774 7321634 ID=MsG0480018608.01.T01:exon:2413;Parent=MsG0480018608.01.T01
Chr4 exon 7322211 7322506 7322211 ID=MsG0480018608.01.T01:exon:2412;Parent=MsG0480018608.01.T01
Chr4 exon 7322928 7323333 7322928 ID=MsG0480018608.01.T01:exon:2411;Parent=MsG0480018608.01.T01
Chr4 five_prime_UTR 7323268 7323333 7323268 ID=MsG0480018608.01.T01:five_prime_utr;Parent=MsG0480018608.01.T01
Chr4 CDS 7322928 7323267 7322928 ID=MsG0480018608.01.T01:cds;Parent=MsG0480018608.01.T01
Chr4 CDS 7322211 7322506 7322211 ID=MsG0480018608.01.T01:cds;Parent=MsG0480018608.01.T01
Chr4 CDS 7321634 7321774 7321634 ID=MsG0480018608.01.T01:cds;Parent=MsG0480018608.01.T01
Chr4 CDS 7319731 7319823 7319731 ID=MsG0480018608.01.T01:cds;Parent=MsG0480018608.01.T01
Chr4 three_prime_UTR 7319525 7319730 7319525 ID=MsG0480018608.01.T01:three_prime_utr;Parent=MsG0480018608.01.T01
Gene Sequence

>MsG0480018608.01.T01

ATGGAGAATAGAGATGAAGATGTAAGAGTAGGAGCAAACAAGTATAGAGAAAACCAACCAATTGGAACTGCTGCTCAATCTCAAGACAATGATGCTAAAGACTACAAAGAGGCACCTTCAGCACCTTTATTTGAGCATGGAGAGTTATCATCATGGTCTTTTTATAGGGCAGGGATTGCTGAGTTTGTGGCTACATTTTTGTTTCTTTATATAACGGTTTTAACTGTTATGGGTGTGAATAAATCCAGTAACAAATGCTCCTCAGTTGGTGTTCAAGGGATTGCTTGGGCTTTTGGTGGAATGATTTTTGCTCTTGTTTATTGTACTGCTGGTATCTCAGGTGGTCACATTAACCCAGCAGTGACATTTGGGCTTTTCTTGGCACGCAAGCTATCTCTAACTAGGACACTGTTCTACATAATTATGCAATGTTTGGGTGCTATTTGTGGTGCTGCTGTTGTTAAGGGCTTCCAACCACGTCAATATGAGAGACTTGGTGGTGGTGCCAACACTCTCAATAAAGGTTACTCCATAGGTGATGGACTTGGAGCTGAGATTGTTGGTACATTTGTTCTTGTTTACACTGTCTTCTCTGCTACTGATGCCAAACGAAATGCAAGAGACTCACATGTTCCTATTTTGGCACCACTGCCAATTGGATTTGCTGTCTTTTTGGTGCATTTGGCTACAATTCCAATTACAGGGACTGGTATTAACCCAGCTAGAAGTCTAGGTGCTGCTCTTATATACAACAAGGACCAAGCTTGGGATGACCATTGGATTTTCTGGGTAGGGCCTTTCACTGGAGCAGCACTTGCAGCTCTTTACCATCAAATAGTCATCAGAGCCATCCCTTTCAAGTCAAAGTGA
Protein sequence

>MsG0480018608.01.T01

MENRDEDVRVGANKYRENQPIGTAAQSQDNDAKDYKEAPSAPLFEHGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVNKSSNKCSSVGVQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRTLFYIIMQCLGAICGAAVVKGFQPRQYERLGGGANTLNKGYSIGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWVGPFTGAALAALYHQIVIRAIPFKSK*