AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004352.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004352.01.T01 MTR_1g077540 98.062 258 5 0 1 258 1 258 0.0 518
MsG0180004352.01.T01 MTR_6g069040 79.845 258 49 1 1 258 1 255 4.69e-145 413
MsG0180004352.01.T01 MTR_1g115405 53.876 258 113 1 1 258 1 252 3.04e-94 283
MsG0180004352.01.T01 MTR_4g063090 53.488 258 114 1 1 258 1 252 1.10e-91 277
MsG0180004352.01.T01 MTR_7g023350 53.876 258 113 1 1 258 1 252 3.41e-91 276
MsG0180004352.01.T01 MTR_2g101370 52.569 253 113 1 4 256 3 248 1.03e-89 272
MsG0180004352.01.T01 MTR_7g103030 53.876 258 111 2 1 258 1 250 5.90e-87 265
MsG0180004352.01.T01 MTR_8g013680 50.000 250 118 1 7 256 5 247 1.95e-82 253
MsG0180004352.01.T01 MTR_1g112910 89.600 125 13 0 284 408 20 144 2.43e-71 226
MsG0180004352.01.T01 MTR_5g012810 50.833 240 117 1 5 244 3 241 4.03e-71 224
MsG0180004352.01.T01 MTR_1g112910 86.154 130 18 0 284 413 20 149 2.38e-69 224
MsG0180004352.01.T01 MTR_1g006490 44.269 253 130 3 5 257 3 244 6.51e-69 218
MsG0180004352.01.T01 MTR_1g006590 43.874 253 131 3 5 257 3 244 1.88e-64 207
MsG0180004352.01.T01 MTR_2g060360 39.914 233 139 1 10 242 8 239 1.41e-51 174
MsG0180004352.01.T01 MTR_2g094270 36.885 244 137 6 11 238 30 272 2.16e-35 132
MsG0180004352.01.T01 MTR_3g118010 37.991 229 128 5 21 238 37 262 1.02e-34 130
MsG0180004352.01.T01 MTR_7g101190 36.910 233 131 6 21 238 39 270 7.01e-34 128
MsG0180004352.01.T01 MTR_4g059390 37.339 233 130 6 21 238 39 270 4.39e-33 126
MsG0180004352.01.T01 MTR_5g010150 36.087 230 132 5 21 238 52 278 4.54e-33 126
MsG0180004352.01.T01 MTR_8g098375 36.087 230 132 5 21 238 52 278 5.03e-33 125
MsG0180004352.01.T01 MTR_4g415300 35.319 235 126 8 21 238 56 281 4.81e-31 120
MsG0180004352.01.T01 MTR_5g082070 35.652 230 133 5 21 238 55 281 6.53e-31 120
MsG0180004352.01.T01 MTR_3g070210 35.652 230 133 5 21 238 55 281 6.60e-31 120
MsG0180004352.01.T01 MTR_5g063930 35.271 258 134 9 13 260 28 262 4.41e-30 117
MsG0180004352.01.T01 MTR_1g095070 38.503 187 91 5 69 238 25 204 2.10e-29 114
MsG0180004352.01.T01 MTR_3g008920 33.898 236 142 6 20 252 25 249 6.22e-28 111
MsG0180004352.01.T01 MTR_5g079570 33.333 222 132 4 20 237 39 248 1.45e-27 110
MsG0180004352.01.T01 MTR_2g104940 34.404 218 135 3 25 242 84 293 2.70e-26 108
MsG0180004352.01.T01 MTR_2g017660 34.061 229 141 4 12 237 27 248 6.36e-26 106
MsG0180004352.01.T01 MTR_2g017620 33.333 228 139 5 15 239 18 235 2.70e-25 103
MsG0180004352.01.T01 MTR_2g017590 31.276 243 156 6 2 243 19 251 3.70e-25 103
MsG0180004352.01.T01 MTR_2g017620 33.333 228 139 5 15 239 32 249 4.70e-25 103
MsG0180004352.01.T01 MTR_4g006730 34.404 218 135 3 25 242 79 288 6.13e-25 104
MsG0180004352.01.T01 MTR_2g094270 35.377 212 123 5 11 209 30 240 1.59e-24 102
MsG0180004352.01.T01 MTR_4g084880 31.651 218 144 3 20 237 34 246 2.69e-24 101
MsG0180004352.01.T01 MTR_8g087720 32.895 228 144 4 12 237 27 247 4.34e-24 100
MsG0180004352.01.T01 MTR_2g017610 31.535 241 147 6 10 243 24 253 1.25e-23 99.8
MsG0180004352.01.T01 MTR_2g017620 37.576 165 95 3 78 239 9 168 1.84e-23 97.1
MsG0180004352.01.T01 MTR_2g017570 32.018 228 140 5 20 243 37 253 5.26e-23 98.2
MsG0180004352.01.T01 MTR_8g087710 32.000 225 144 5 20 243 38 254 3.15e-22 95.9
MsG0180004352.01.T01 MTR_4g006630 33.493 209 131 3 34 242 1 201 2.17e-21 92.4
MsG0180004352.01.T01 MTR_4g006730 33.493 209 131 3 34 242 1 201 2.45e-21 92.0
MsG0180004352.01.T01 MTR_7g010650 29.707 239 141 7 25 257 41 258 3.40e-21 93.2
MsG0180004352.01.T01 MTR_3g070210 33.173 208 122 5 21 214 55 259 1.21e-20 91.7
MsG0180004352.01.T01 MTR_1g070385 26.695 236 162 4 21 253 62 289 9.56e-20 92.0
MsG0180004352.01.T01 MTR_1g095070 35.484 155 79 4 69 209 25 172 1.30e-17 80.9
MsG0180004352.01.T01 MTR_1g097840 30.357 224 145 5 25 245 78 293 3.90e-17 82.0
MsG0180004352.01.T01 MTR_4g075570 32.979 188 96 7 70 234 95 275 4.73e-17 82.0
MsG0180004352.01.T01 MTR_4g075590 28.000 250 145 7 13 239 29 266 1.07e-16 80.9
MsG0180004352.01.T01 MTR_8g098375 31.737 167 106 3 21 182 52 215 3.05e-16 78.2
MsG0180004352.01.T01 MTR_5g010150 32.317 164 103 3 21 179 52 212 4.18e-16 77.4
MsG0180004352.01.T01 MTR_4g059390 33.533 167 102 4 21 179 39 204 2.05e-15 75.1
MsG0180004352.01.T01 MTR_3g070210 33.333 153 94 3 21 168 55 204 5.81e-15 73.9
MsG0180004352.01.T01 MTR_4g415300 30.769 169 98 6 21 179 56 215 1.28e-14 73.2
MsG0180004352.01.T01 MTR_4g006730 33.533 167 103 3 25 191 79 237 9.82e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004352.01.T01 AT1G73190 67.803 264 78 2 2 258 5 268 1.56e-121 353
MsG0180004352.01.T01 AT1G17810 68.182 264 76 3 2 258 5 267 8.90e-117 342
MsG0180004352.01.T01 AT4G01470 56.589 258 106 1 1 258 1 252 4.31e-100 298
MsG0180004352.01.T01 AT2G36830 53.876 258 112 1 1 258 1 251 3.96e-96 288
MsG0180004352.01.T01 AT3G26520 53.668 259 113 3 1 258 1 253 3.29e-93 281
MsG0180004352.01.T01 AT3G16240 49.603 252 121 1 7 258 5 250 9.62e-82 251
MsG0180004352.01.T01 AT5G47450 49.351 231 117 0 9 239 7 237 5.58e-75 234
MsG0180004352.01.T01 AT4G17340 49.180 244 124 0 9 252 7 250 4.18e-70 221
MsG0180004352.01.T01 AT2G25810 46.914 243 123 3 4 246 2 238 1.09e-64 207
MsG0180004352.01.T01 AT3G47440 43.612 227 123 3 18 242 20 243 2.13e-50 171
MsG0180004352.01.T01 AT5G23590 63.636 121 44 0 285 405 21 141 6.80e-45 157
MsG0180004352.01.T01 AT5G23590 63.636 121 44 0 285 405 21 141 6.80e-45 157
MsG0180004352.01.T01 AT2G37170 36.585 246 140 6 8 238 67 311 2.91e-37 138
MsG0180004352.01.T01 AT2G37170 36.777 242 137 6 12 238 28 268 5.17e-37 136
MsG0180004352.01.T01 AT2G37180 37.339 233 130 6 21 238 37 268 5.70e-36 134
MsG0180004352.01.T01 AT2G39010 36.820 239 123 7 21 238 38 269 1.21e-35 133
MsG0180004352.01.T01 AT3G53420 37.179 234 129 7 21 238 39 270 8.82e-35 130
MsG0180004352.01.T01 AT3G53420 37.179 234 129 7 21 238 39 270 8.82e-35 130
MsG0180004352.01.T01 AT2G16850 39.394 231 122 7 21 238 36 261 1.34e-34 130
MsG0180004352.01.T01 AT4G35100 37.759 241 132 7 11 238 28 263 4.36e-34 128
MsG0180004352.01.T01 AT4G35100 37.759 241 132 7 11 238 28 263 4.36e-34 128
MsG0180004352.01.T01 AT3G54820 36.017 236 129 7 21 238 38 269 7.38e-33 125
MsG0180004352.01.T01 AT1G01620 37.662 231 126 7 21 238 52 277 3.12e-32 124
MsG0180004352.01.T01 AT4G00430 36.797 231 128 7 21 238 53 278 5.17e-32 123
MsG0180004352.01.T01 AT2G45960 36.667 240 125 9 21 243 52 281 1.25e-31 122
MsG0180004352.01.T01 AT5G60660 35.628 247 141 7 8 238 26 270 2.60e-31 121
MsG0180004352.01.T01 AT4G23400 36.170 235 124 8 21 238 53 278 3.52e-31 120
MsG0180004352.01.T01 AT3G61430 36.250 240 126 9 21 243 52 281 4.68e-31 120
MsG0180004352.01.T01 AT3G61430 36.250 240 126 9 21 243 52 281 4.68e-31 120
MsG0180004352.01.T01 AT1G01620 40.212 189 101 4 61 238 18 205 3.34e-29 113
MsG0180004352.01.T01 AT5G37820 34.821 224 131 6 24 243 82 294 8.84e-29 115
MsG0180004352.01.T01 AT5G37820 34.821 224 131 6 24 243 46 258 1.50e-28 113
MsG0180004352.01.T01 AT5G37810 34.862 218 127 6 24 237 46 252 7.96e-26 106
MsG0180004352.01.T01 AT1G80760 33.945 218 136 4 25 242 84 293 7.52e-25 103
MsG0180004352.01.T01 AT1G31885 31.707 287 172 8 20 289 42 321 3.10e-24 102
MsG0180004352.01.T01 AT1G52180 59.524 84 33 1 125 208 34 116 4.17e-24 97.1
MsG0180004352.01.T01 AT4G19030 33.333 225 136 6 20 237 54 271 5.86e-23 98.6
MsG0180004352.01.T01 AT4G18910 31.111 225 141 5 20 237 51 268 3.59e-22 96.3
MsG0180004352.01.T01 AT1G31885 31.502 273 163 7 34 289 2 267 5.57e-22 95.1
MsG0180004352.01.T01 AT2G45960 33.036 224 114 9 21 217 52 266 2.47e-21 94.0
MsG0180004352.01.T01 AT2G45960 34.483 203 110 7 21 209 52 245 3.52e-21 93.2
MsG0180004352.01.T01 AT2G39010 34.568 162 85 5 21 168 38 192 4.90e-19 85.9
MsG0180004352.01.T01 AT4G10380 31.280 211 137 4 25 235 82 284 2.36e-18 85.5
MsG0180004352.01.T01 AT3G06100 26.337 243 168 4 3 243 28 261 5.17e-18 84.0
MsG0180004352.01.T01 AT4G00430 33.728 169 101 5 21 183 53 216 1.22e-15 75.9
MsG0180004352.01.T01 AT2G34390 29.825 228 143 7 20 240 47 264 1.44e-14 74.3
MsG0180004352.01.T01 AT3G06100 27.149 221 150 4 25 243 2 213 1.51e-14 73.2
MsG0180004352.01.T01 AT2G34390 30.357 224 139 7 24 240 9 222 9.25e-14 71.2
MsG0180004352.01.T01 AT3G06100 28.986 138 96 2 106 243 45 180 5.43e-11 62.0
MsG0180004352.01.T01 AT4G19030 31.250 176 107 6 20 188 54 222 9.84e-11 62.0

Find 100 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCCTCTCGCCGCAAAATT+TGG 0.145415 1:+76796516 None:intergenic
GGCATTATCATTGGATCTTC+TGG 0.179466 1:-76798564 MsG0180004352.01.T01:CDS
GTTTGTCAGGGTGGAGTTCT+AGG 0.184501 1:+76796739 None:intergenic
TTCAGCTACGGTTGCTCTTA+TGG 0.191582 1:+76800963 None:intergenic
TGGAAATTGGCGGCGGCGTT+GGG 0.191651 1:+76796705 None:intergenic
TGTGCCAATGGTGCCTCTTT+TGG 0.216016 1:+76798705 None:intergenic
TATTGGGTTGCTCAACTTCT+TGG 0.226985 1:-76800606 MsG0180004352.01.T01:CDS
TAGTGACAAGCCTCAATAAA+AGG 0.227108 1:+76800568 None:intergenic
ACTTGCATCTTTGTCTTTGC+TGG 0.233185 1:-76800931 MsG0180004352.01.T01:CDS
TCCTTAGAGCTGTCTACTAT+TGG 0.241545 1:-76800623 MsG0180004352.01.T01:CDS
ACATTTACATTTAACTTTAC+AGG 0.243374 1:+76798177 None:intergenic
TTCTGGGTGGGTCCATTTCT+AGG 0.248968 1:-76798547 MsG0180004352.01.T01:CDS
GGGTCATCGGGGCGTTTGTC+AGG 0.260279 1:+76796726 None:intergenic
ATGAACCCTGCTCGGGCTTT+TGG 0.265818 1:-76798610 MsG0180004352.01.T01:CDS
TTGGAAATTGGCGGCGGCGT+TGG 0.267745 1:+76796704 None:intergenic
AGTTCGAAGTTGTTGGAAAT+TGG 0.286967 1:+76796692 None:intergenic
TTTAACTTTACAGGAGTAAC+AGG 0.304831 1:+76798186 None:intergenic
AGGGTGGAGTTCTAGGGCTT+TGG 0.310526 1:+76796746 None:intergenic
CCTTAGAGCTGTCTACTATT+GGG 0.314794 1:-76800622 MsG0180004352.01.T01:CDS
ATCAACCCTGCAGTTACTTT+TGG 0.319696 1:-76800672 MsG0180004352.01.T01:CDS
GGCGGCGGCGTTGGGGTCAT+CGG 0.330074 1:+76796713 None:intergenic
GAGGCTTGTCACTAATAATA+TGG 0.336955 1:-76800559 MsG0180004352.01.T01:intron
CTTGAGATTGCCATGACATT+TGG 0.341841 1:-76798763 MsG0180004352.01.T01:CDS
GTGGCATTTGGTGTTGGTGC+TGG 0.344660 1:-76798799 MsG0180004352.01.T01:CDS
AGATGGAAAACGCCGCAAAA+TGG 0.346689 1:-76796577 MsG0180004352.01.T01:CDS
TCAACTTCTTGGTTCTTTAG+TGG 0.352258 1:-76800595 MsG0180004352.01.T01:CDS
CTAGCTGGTGGACCATTTGA+TGG 0.356913 1:-76798640 MsG0180004352.01.T01:CDS
GCGGCGGCGTTGGGGTCATC+GGG 0.358836 1:+76796714 None:intergenic
TCATCTAGCATGCATGTATC+TGG 0.363820 1:-76800702 MsG0180004352.01.T01:CDS
TAAAGTGACTAATAATCTTC+AGG 0.368133 1:+76798439 None:intergenic
TTAGTATGAGGAGGCTCAAC+TGG 0.380653 1:+76798484 None:intergenic
CCTTCCAAATGCATATCTTC+TGG 0.381858 1:+76801011 None:intergenic
GCATTATCATTGGATCTTCT+GGG 0.387836 1:-76798563 MsG0180004352.01.T01:CDS
ACGGTTGCTCTTATGGAATC+TGG 0.390261 1:+76800970 None:intergenic
CGTAGGAAGTTCGAAGTTGT+TGG 0.393994 1:+76796685 None:intergenic
ATCTTTGTCTTTGCTGGAGA+AGG 0.395798 1:-76800925 MsG0180004352.01.T01:CDS
CAGGCGTTCAATGTGGCATT+TGG 0.406421 1:-76798811 MsG0180004352.01.T01:CDS
CGCATGCATAGCACGAATCC+TGG 0.416650 1:+76796449 None:intergenic
TTAGCAATTGCACTAGTAGT+TGG 0.426899 1:-76798673 MsG0180004352.01.T01:CDS
TTCAATGTGGCATTTGGTGT+TGG 0.431011 1:-76798805 MsG0180004352.01.T01:CDS
GCTATTGCAGCTCCTAGAAA+TGG 0.432985 1:+76798535 None:intergenic
TTGGACCTGCTTTAGTGGGC+TGG 0.433591 1:-76798591 MsG0180004352.01.T01:CDS
CTGCTTTAGTGGGCTGGAGA+TGG 0.447032 1:-76798585 MsG0180004352.01.T01:CDS
CCCAATAGTAGACAGCTCTA+AGG 0.447069 1:+76800622 None:intergenic
TAATCCTCATCATCAACCTT+TGG 0.455773 1:-76798464 MsG0180004352.01.T01:CDS
GCAACCAGAAGATATGCATT+TGG 0.457504 1:-76801015 MsG0180004352.01.T01:CDS
TGATGATGAGGATTAGTATG+AGG 0.461315 1:+76798472 None:intergenic
AAGGATGCAGGTGCATCATC+TGG 0.462584 1:-76800777 MsG0180004352.01.T01:CDS
GGTCATCGGGGCGTTTGTCA+GGG 0.470055 1:+76796727 None:intergenic
AGTGACAAGCCTCAATAAAA+GGG 0.476287 1:+76800569 None:intergenic
AACTACTAGTGCAATTGCTA+AGG 0.480125 1:+76798675 None:intergenic
TGGCATTTGGTGTTGGTGCT+GGG 0.481573 1:-76798798 MsG0180004352.01.T01:CDS
TTCATGCATGCTCCATCAAA+TGG 0.481598 1:+76798628 None:intergenic
GCTGGAGATGGCATTATCAT+TGG 0.481888 1:-76798573 MsG0180004352.01.T01:CDS
GCAGGTCCAAAAGCCCGAGC+AGG 0.487617 1:+76798604 None:intergenic
TGCGGCGAGAGGGAGGGAAG+AGG 0.488182 1:-76796508 MsG0180004352.01.T01:CDS
GAGCATGCATGAACCCTGCT+CGG 0.488260 1:-76798618 MsG0180004352.01.T01:CDS
AGTTGAATGATGAGATTGCC+AGG 0.496225 1:-76796467 MsG0180004352.01.T01:CDS
TTTGTCAGGGTGGAGTTCTA+GGG 0.497138 1:+76796740 None:intergenic
GGAGCTGGTTATGCTCTTGA+AGG 0.500040 1:-76796417 MsG0180004352.01.T01:CDS
AGCATGCATGAACCCTGCTC+GGG 0.503698 1:-76798617 MsG0180004352.01.T01:CDS
GCTATGCATGCGAAGAAAGC+GGG 0.506757 1:-76796438 MsG0180004352.01.T01:CDS
GGAAATTGGCGGCGGCGTTG+GGG 0.507480 1:+76796706 None:intergenic
TCGAAGTTGTTGGAAATTGG+CGG 0.514195 1:+76796695 None:intergenic
GATCCCAAAAGAGGCACCAT+TGG 0.516327 1:-76798709 MsG0180004352.01.T01:CDS
CATCTCCAGCCCACTAAAGC+AGG 0.518265 1:+76798586 None:intergenic
AGAGCACCAAAAGTAACTGC+AGG 0.519027 1:+76800666 None:intergenic
AAGATATGCATTTGGAAGGA+TGG 0.521944 1:-76801007 MsG0180004352.01.T01:CDS
CATGCGAAGAAAGCGGGAGC+TGG 0.540765 1:-76796432 MsG0180004352.01.T01:CDS
CGGCGGCGTTGGGGTCATCG+GGG 0.541546 1:+76796715 None:intergenic
ACTGCCATTGATCCCAAAAG+AGG 0.546787 1:-76798718 MsG0180004352.01.T01:CDS
CATCGGGGCGTTTGTCAGGG+TGG 0.552608 1:+76796730 None:intergenic
GGGAAGATATACAAGGATGC+AGG 0.559750 1:-76800789 MsG0180004352.01.T01:CDS
GTTGGAGCAAACATTCTAGC+TGG 0.560636 1:-76798655 MsG0180004352.01.T01:CDS
GGCGAGAGGGAGGGAAGAGG+AGG 0.562652 1:-76796505 MsG0180004352.01.T01:CDS
TATCATTGGATCTTCTGGGT+GGG 0.567093 1:-76798559 MsG0180004352.01.T01:CDS
TGCATCATCTGGTGAGCTAG+TGG 0.572276 1:-76800766 MsG0180004352.01.T01:CDS
GGAGCCAAAGGTTGATGATG+AGG 0.575555 1:+76798460 None:intergenic
ATACATTAATCCAAATGTCA+TGG 0.585468 1:+76798753 None:intergenic
TAATAATCTTCAGGAGCCAA+AGG 0.591897 1:+76798448 None:intergenic
ACTACTAGTGCAATTGCTAA+GGG 0.593705 1:+76798676 None:intergenic
TTATCATTGGATCTTCTGGG+TGG 0.594315 1:-76798560 MsG0180004352.01.T01:CDS
CCAGAAGATATGCATTTGGA+AGG 0.599791 1:-76801011 MsG0180004352.01.T01:CDS
GGAGCAAACATTCTAGCTGG+TGG 0.601303 1:-76798652 MsG0180004352.01.T01:CDS
TTCATCTTTGAGGATATCGT+AGG 0.604899 1:+76796668 None:intergenic
CAGGTCCAAAAGCCCGAGCA+GGG 0.605571 1:+76798605 None:intergenic
TCTAGCATGCATGTATCTGG+TGG 0.608990 1:-76800699 MsG0180004352.01.T01:CDS
TGCATTTGGAAGGATGGATG+AGG 0.613424 1:-76801001 MsG0180004352.01.T01:CDS
TAAGGGTGCAATTGTGCCAA+TGG 0.613670 1:+76798693 None:intergenic
AAGTTGTTGGAAATTGGCGG+CGG 0.615655 1:+76796698 None:intergenic
ACTACTACGAACTTAGAGCA+AGG 0.618291 1:+76800896 None:intergenic
TGCTATGCATGCGAAGAAAG+CGG 0.619569 1:-76796439 MsG0180004352.01.T01:CDS
CGTCGTGAATCACTACGAGA+TGG 0.621328 1:-76796594 MsG0180004352.01.T01:CDS
TTGCCTGTTATAGAGACCAC+AGG 0.627295 1:-76798830 MsG0180004352.01.T01:intron
CTACTACGAACTTAGAGCAA+GGG 0.634814 1:+76800897 None:intergenic
TAATGCAGGGAAGATATACA+AGG 0.641110 1:-76800796 MsG0180004352.01.T01:intron
TGATGAGGATTAGTATGAGG+AGG 0.643456 1:+76798475 None:intergenic
GAGCACCAAAAGTAACTGCA+GGG 0.663279 1:+76800667 None:intergenic
AATGCCACATTGAACGCCTG+TGG 0.670395 1:+76798814 None:intergenic
GAGACCACAGGCGTTCAATG+TGG 0.680641 1:-76798818 MsG0180004352.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATGATAATATATAGA+AGG - Chr1:76799317-76799336 MsG0180004352.01.T01:intron 10.0%
!! GAATATTATTAAGTTATTTA+TGG - Chr1:76799422-76799441 MsG0180004352.01.T01:intron 10.0%
!! TGAAAATTAATTAATGTAAA+GGG - Chr1:76799940-76799959 MsG0180004352.01.T01:intron 10.0%
!! TTAAAAAATGAAAAAAGAAA+AGG - Chr1:76800527-76800546 MsG0180004352.01.T01:intron 10.0%
!! TTGAAAATTAATTAATGTAA+AGG - Chr1:76799939-76799958 MsG0180004352.01.T01:intron 10.0%
!!! AATTTTCATTTTTTTAATAG+GGG + Chr1:76800370-76800389 None:intergenic 10.0%
!!! TTTACATTAATTAATTTTCA+AGG + Chr1:76799940-76799959 None:intergenic 10.0%
!! AAAATTAATAATTACACATG+TGG + Chr1:76800470-76800489 None:intergenic 15.0%
!! AAGTTATTTATGGTTTATAA+AGG - Chr1:76799432-76799451 MsG0180004352.01.T01:intron 15.0%
!! ATCCATATAGATATATAATA+TGG + Chr1:76796567-76796586 None:intergenic 15.0%
!! ATTAAAATAGAAGTGATTAT+TGG + Chr1:76796969-76796988 None:intergenic 15.0%
!! CAAATAGATTAATGATATTT+GGG + Chr1:76798415-76798434 None:intergenic 15.0%
!! TAATCATAAGTATATATAGA+AGG + Chr1:76796595-76796614 None:intergenic 15.0%
!! TACCATATTATATATCTATA+TGG - Chr1:76796562-76796581 MsG0180004352.01.T01:CDS 15.0%
!! TGTTCAAATAAATTTCAATA+GGG - Chr1:76800164-76800183 MsG0180004352.01.T01:intron 15.0%
!! TTAATATGTGTATTATGAAA+TGG - Chr1:76799016-76799035 MsG0180004352.01.T01:intron 15.0%
!! TTGTTCAAATAAATTTCAAT+AGG - Chr1:76800163-76800182 MsG0180004352.01.T01:intron 15.0%
!!! AAATCTAGAATCTAAAATTT+AGG - Chr1:76797959-76797978 MsG0180004352.01.T01:intron 15.0%
!!! AAATTGCATTTTTATTTTAC+CGG + Chr1:76797882-76797901 None:intergenic 15.0%
!!! AAATTTTAGCATTTGAATTA+AGG - Chr1:76800284-76800303 MsG0180004352.01.T01:intron 15.0%
!!! AATATTATGTTTTGTAGTTT+TGG - Chr1:76797588-76797607 MsG0180004352.01.T01:intron 15.0%
!!! ACTTTTATATGAATACATTA+TGG - Chr1:76798922-76798941 MsG0180004352.01.T01:intron 15.0%
!!! ATATGTATTTTTTATTTGAG+TGG - Chr1:76798292-76798311 MsG0180004352.01.T01:intron 15.0%
!!! ATTTTCATTTTTTTAATAGG+GGG + Chr1:76800369-76800388 None:intergenic 15.0%
!!! TATGTATTTTTTATTTGAGT+GGG - Chr1:76798293-76798312 MsG0180004352.01.T01:intron 15.0%
!! AATATCATTACTCTTTGTAA+AGG - Chr1:76799644-76799663 MsG0180004352.01.T01:intron 20.0%
!! ACTATATAGTTAATTTAGAC+TGG - Chr1:76798350-76798369 MsG0180004352.01.T01:intron 20.0%
!! ATAAAGGATAAAACTGTAAA+GGG - Chr1:76799999-76800018 MsG0180004352.01.T01:intron 20.0%
!! CCAAATAGATTAATGATATT+TGG + Chr1:76798416-76798435 None:intergenic 20.0%
!! CCAAATATCATTAATCTATT+TGG - Chr1:76798413-76798432 MsG0180004352.01.T01:intron 20.0%
!! GTAAAAAATATGTTAGATGA+GGG + Chr1:76796936-76796955 None:intergenic 20.0%
!! TAAAAAATATGTTAGATGAG+GGG + Chr1:76796935-76796954 None:intergenic 20.0%
!! TAACAAAGCATATAAGATTA+CGG + Chr1:76798539-76798558 None:intergenic 20.0%
!! TATAAAGGATAAAACTGTAA+AGG - Chr1:76799998-76800017 MsG0180004352.01.T01:intron 20.0%
!! TATCATGTATAAGTATAATC+TGG - Chr1:76799042-76799061 MsG0180004352.01.T01:intron 20.0%
!! TGTAAAAAATATGTTAGATG+AGG + Chr1:76796937-76796956 None:intergenic 20.0%
!! TGTTAAATGTTGCAAATATA+TGG + Chr1:76798075-76798094 None:intergenic 20.0%
!! TTTGAATTAAGGAAAATTCT+AGG - Chr1:76800295-76800314 MsG0180004352.01.T01:intron 20.0%
!!! ACATTTACATTTAACTTTAC+AGG + Chr1:76799257-76799276 None:intergenic 20.0%
!!! ATACTGAACCATTTTTTTTT+TGG - Chr1:76797469-76797488 MsG0180004352.01.T01:intron 20.0%
!!! ATACTTATGATTAATTTGTG+TGG - Chr1:76796602-76796621 MsG0180004352.01.T01:CDS 20.0%
!!! ATGTATTTTTTATTTGAGTG+GGG - Chr1:76798294-76798313 MsG0180004352.01.T01:intron 20.0%
!!! TAATGACTATTTTTGTATTG+TGG - Chr1:76798578-76798597 MsG0180004352.01.T01:CDS 20.0%
! AAAAATATTAAGCGAAAGAG+AGG - Chr1:76798228-76798247 MsG0180004352.01.T01:CDS 25.0%
! AAATAACTGAGAGTTATGAT+TGG - Chr1:76800059-76800078 MsG0180004352.01.T01:intron 25.0%
! AAATTCAATATATACACGTG+TGG + Chr1:76800509-76800528 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG - Chr1:76799588-76799607 MsG0180004352.01.T01:intron 25.0%
! ATACATCATCAAATTACATG+AGG + Chr1:76797638-76797657 None:intergenic 25.0%
! ATACATTAATCCAAATGTCA+TGG + Chr1:76798681-76798700 None:intergenic 25.0%
! ATATATAGAAGGATATGTGT+AGG - Chr1:76799328-76799347 MsG0180004352.01.T01:intron 25.0%
! CAAATAAATTTCAATAGGGT+TGG - Chr1:76800168-76800187 MsG0180004352.01.T01:intron 25.0%
! TAAAGTGACTAATAATCTTC+AGG + Chr1:76798995-76799014 None:intergenic 25.0%
! TATTTCTTTGTATGTTGTTG+TGG - Chr1:76799117-76799136 MsG0180004352.01.T01:intron 25.0%
! TGTAAAATTGACAATTCACT+AGG + Chr1:76797092-76797111 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + Chr1:76799576-76799595 None:intergenic 25.0%
!! TCTAGAATCTAAAATTTAGG+AGG - Chr1:76797962-76797981 MsG0180004352.01.T01:intron 25.0%
!! TTAAACTTTTTAATCCTACG+AGG - Chr1:76797904-76797923 MsG0180004352.01.T01:intron 25.0%
!! TTATGGTTTATAAAGGTACA+TGG - Chr1:76799439-76799458 MsG0180004352.01.T01:intron 25.0%
!!! CATTTTTTCTCTCTTTTTCT+GGG - Chr1:76800608-76800627 MsG0180004352.01.T01:CDS 25.0%
!!! TTATGATTAATTTGTGTGGT+TGG - Chr1:76796606-76796625 MsG0180004352.01.T01:CDS 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG + Chr1:76799589-76799608 None:intergenic 25.0%
AAAAAATGGAGTTATGCTTG+AGG + Chr1:76800596-76800615 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG + Chr1:76799563-76799582 None:intergenic 30.0%
AAATAGTCATTACGCATGAT+TGG + Chr1:76798570-76798589 None:intergenic 30.0%
AAATCTTCGTTTAGTGTGTA+AGG - Chr1:76799163-76799182 MsG0180004352.01.T01:intron 30.0%
AAATTACATGAGGCCAATTA+TGG + Chr1:76797628-76797647 None:intergenic 30.0%
AATTACATGAGGCCAATTAT+GGG + Chr1:76797627-76797646 None:intergenic 30.0%
ACTTCGAGATGGATAAAAAT+AGG - Chr1:76798508-76798527 MsG0180004352.01.T01:CDS 30.0%
AGTTGAGAAAAATTCAGCTA+CGG + Chr1:76796483-76796502 None:intergenic 30.0%
ATTGAGCTCAAAACTCAAAA+GGG + Chr1:76797012-76797031 None:intergenic 30.0%
CCAGAAAAAGAGAGAAAAAA+TGG + Chr1:76800610-76800629 None:intergenic 30.0%
CTTCGAGATGGATAAAAATA+GGG - Chr1:76798509-76798528 MsG0180004352.01.T01:CDS 30.0%
GTGTATTTGAGAGATTTCAT+TGG + Chr1:76799844-76799863 None:intergenic 30.0%
TACACACTAAACGAAGATTT+GGG + Chr1:76799163-76799182 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG - Chr1:76799614-76799633 MsG0180004352.01.T01:intron 30.0%
TTACAATACCTAGTTAATCC+CGG - Chr1:76797808-76797827 MsG0180004352.01.T01:intron 30.0%
TTACACACTAAACGAAGATT+TGG + Chr1:76799164-76799183 None:intergenic 30.0%
TTATTTGAACAAAATCGACC+CGG + Chr1:76800155-76800174 None:intergenic 30.0%
TTCGAGATGGATAAAAATAG+GGG - Chr1:76798510-76798529 MsG0180004352.01.T01:CDS 30.0%
TTGAAAATTGTTGCATGTGT+GGG - Chr1:76798373-76798392 MsG0180004352.01.T01:intron 30.0%
! ATAAGAAGAGTAGACTTTTG+AGG - Chr1:76799751-76799770 MsG0180004352.01.T01:intron 30.0%
! GTTTATAAAGGTACATGGTT+AGG - Chr1:76799444-76799463 MsG0180004352.01.T01:intron 30.0%
! TAAGATCGAAAACCATTTTG+CGG + Chr1:76800869-76800888 None:intergenic 30.0%
! TCAACGAGTGTCTTTTATAA+AGG - Chr1:76799983-76800002 MsG0180004352.01.T01:intron 30.0%
! TTTAACTTTACAGGAGTAAC+AGG + Chr1:76799248-76799267 None:intergenic 30.0%
!! ACGGTTTTGTCTTTGATAAA+AGG - Chr1:76799909-76799928 MsG0180004352.01.T01:intron 30.0%
!! AGCTTTTTCTCCAAATTTTG+CGG - Chr1:76800905-76800924 MsG0180004352.01.T01:intron 30.0%
!!! AACCACTTTTTGACAACTTT+TGG - Chr1:76799494-76799513 MsG0180004352.01.T01:intron 30.0%
!!! AACCATTTTTTTTTTGGTGG+TGG - Chr1:76797475-76797494 MsG0180004352.01.T01:intron 30.0%
!!! AAGCTTTGTTGATGTCTTTT+TGG + Chr1:76800659-76800678 None:intergenic 30.0%
!!! AGCTTTGTTGATGTCTTTTT+GGG + Chr1:76800658-76800677 None:intergenic 30.0%
!!! CCATTTTTTCTCTCTTTTTC+TGG - Chr1:76800607-76800626 MsG0180004352.01.T01:CDS 30.0%
!!! CTGAACCATTTTTTTTTTGG+TGG - Chr1:76797472-76797491 MsG0180004352.01.T01:intron 30.0%
AACTACTAGTGCAATTGCTA+AGG + Chr1:76798759-76798778 None:intergenic 35.0%
AAGAGACTAAAACTTCGAGA+TGG - Chr1:76798497-76798516 MsG0180004352.01.T01:CDS 35.0%
AAGATATGCATTTGGAAGGA+TGG - Chr1:76796424-76796443 MsG0180004352.01.T01:CDS 35.0%
AAGATTTGTCCTCTAGTTGA+GGG - Chr1:76799782-76799801 MsG0180004352.01.T01:intron 35.0%
AATTTGCATCTCTCATCAAG+AGG - Chr1:76800201-76800220 MsG0180004352.01.T01:intron 35.0%
ACTACTAGTGCAATTGCTAA+GGG + Chr1:76798758-76798777 None:intergenic 35.0%
AGTGACAAGCCTCAATAAAA+GGG + Chr1:76796865-76796884 None:intergenic 35.0%
AGTTCGAAGTTGTTGGAAAT+TGG + Chr1:76800742-76800761 None:intergenic 35.0%
ATCGTAACATTGGCAAAGTT+AGG + Chr1:76800341-76800360 None:intergenic 35.0%
ATTTGCATCTCTCATCAAGA+GGG - Chr1:76800202-76800221 MsG0180004352.01.T01:intron 35.0%
CATAAAATATGCAAGGTCTG+GGG + Chr1:76797513-76797532 None:intergenic 35.0%
CTAAGTCAAAATTGGCCAAA+AGG + Chr1:76800428-76800447 None:intergenic 35.0%
CTCATAGTAAAATAGGTCTC+CGG - Chr1:76797860-76797879 MsG0180004352.01.T01:intron 35.0%
GACGATGCATAAAATATGCA+AGG + Chr1:76797520-76797539 None:intergenic 35.0%
GAGGCTTGTCACTAATAATA+TGG - Chr1:76796872-76796891 MsG0180004352.01.T01:intron 35.0%
GATTGAGCTCAAAACTCAAA+AGG + Chr1:76797013-76797032 None:intergenic 35.0%
GCATAAAATATGCAAGGTCT+GGG + Chr1:76797514-76797533 None:intergenic 35.0%
GCATTATCATTGGATCTTCT+GGG - Chr1:76798868-76798887 MsG0180004352.01.T01:intron 35.0%
GTACATGGTTAGGTTTGTAA+AGG - Chr1:76799454-76799473 MsG0180004352.01.T01:intron 35.0%
GTAGACAATACCATAGAAAG+CGG + Chr1:76799871-76799890 None:intergenic 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG + Chr1:76799499-76799518 None:intergenic 35.0%
GTTGAAAATTGTTGCATGTG+TGG - Chr1:76798372-76798391 MsG0180004352.01.T01:intron 35.0%
TAATAATCTTCAGGAGCCAA+AGG + Chr1:76798986-76799005 None:intergenic 35.0%
TAATCCTCATCATCAACCTT+TGG - Chr1:76798967-76798986 MsG0180004352.01.T01:intron 35.0%
TAATGCAGGGAAGATATACA+AGG - Chr1:76796635-76796654 MsG0180004352.01.T01:CDS 35.0%
TACAATACCTAGTTAATCCC+GGG - Chr1:76797809-76797828 MsG0180004352.01.T01:intron 35.0%
TAGTGACAAGCCTCAATAAA+AGG + Chr1:76796866-76796885 None:intergenic 35.0%
TATGGTATTGTCTACTTTGC+AGG - Chr1:76799876-76799895 MsG0180004352.01.T01:intron 35.0%
TCACCTCATTGTATAAAGAC+CGG - Chr1:76800133-76800152 MsG0180004352.01.T01:intron 35.0%
TCGTAACATTGGCAAAGTTA+GGG + Chr1:76800340-76800359 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+TGG + Chr1:76797515-76797534 None:intergenic 35.0%
TTAGATGAGGGGAACAAATA+AGG + Chr1:76796924-76796943 None:intergenic 35.0%
TTAGCAATTGCACTAGTAGT+TGG - Chr1:76798758-76798777 MsG0180004352.01.T01:CDS 35.0%
TTCGGCTCTCATAGTAAAAT+AGG - Chr1:76797853-76797872 MsG0180004352.01.T01:intron 35.0%
! AAATTTTGTCCTAGCTCAGT+TGG + Chr1:76797547-76797566 None:intergenic 35.0%
! AGGCAATTTAAGAGGCATAA+AGG - Chr1:76797924-76797943 MsG0180004352.01.T01:intron 35.0%
! CAAGTAATGTGAGACTTTTG+AGG - Chr1:76799725-76799744 MsG0180004352.01.T01:intron 35.0%
! CTCTTATTTCCACCCATAAT+TGG - Chr1:76797612-76797631 MsG0180004352.01.T01:intron 35.0%
! CTTTGCCAATGTTACGATTT+TGG - Chr1:76800343-76800362 MsG0180004352.01.T01:intron 35.0%
! TCAACTTCTTGGTTCTTTAG+TGG - Chr1:76796836-76796855 MsG0180004352.01.T01:intron 35.0%
! TGATGATGAGGATTAGTATG+AGG + Chr1:76798962-76798981 None:intergenic 35.0%
! TGGTTGGTTGAATTAATGCA+GGG - Chr1:76796622-76796641 MsG0180004352.01.T01:CDS 35.0%
! TTCATCTTTGAGGATATCGT+AGG + Chr1:76800766-76800785 None:intergenic 35.0%
! TTGGATGATTTTACACCATC+TGG - Chr1:76798432-76798451 MsG0180004352.01.T01:intron 35.0%
!! AAAGGGTGTTGTATTGTACA+AGG - Chr1:76800016-76800035 MsG0180004352.01.T01:intron 35.0%
!! GGCATTGACTAAGTCAAAAT+TGG + Chr1:76800436-76800455 None:intergenic 35.0%
!!! ATTTTTTTTTTGGTGGTGGC+CGG - Chr1:76797479-76797498 MsG0180004352.01.T01:intron 35.0%
!!! TGCTAGCTTTTTCATCTTTG+AGG + Chr1:76800776-76800795 None:intergenic 35.0%
!!! TGTTGATGTCTTTTTGGGTT+AGG + Chr1:76800653-76800672 None:intergenic 35.0%
!!! TTTTTTACTGTAGTGTGCAG+AGG - Chr1:76799189-76799208 MsG0180004352.01.T01:intron 35.0%
ACTACTACGAACTTAGAGCA+AGG + Chr1:76796538-76796557 None:intergenic 40.0%
ACTTGCATCTTTGTCTTTGC+TGG - Chr1:76796500-76796519 MsG0180004352.01.T01:CDS 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG + Chr1:76799553-76799572 None:intergenic 40.0%
AGTTGAATGATGAGATTGCC+AGG - Chr1:76800964-76800983 MsG0180004352.01.T01:CDS 40.0%
ATCCATCTAAACGTTGTGTG+AGG + Chr1:76799392-76799411 None:intergenic 40.0%
ATCCTACGAGGCAATTTAAG+AGG - Chr1:76797916-76797935 MsG0180004352.01.T01:intron 40.0%
ATCTTTGTCTTTGCTGGAGA+AGG - Chr1:76796506-76796525 MsG0180004352.01.T01:CDS 40.0%
CACCTCATTGTATAAAGACC+GGG - Chr1:76800134-76800153 MsG0180004352.01.T01:intron 40.0%
CCAGAAGATATGCATTTGGA+AGG - Chr1:76796420-76796439 MsG0180004352.01.T01:CDS 40.0%
CCTTAGAGCTGTCTACTATT+GGG - Chr1:76796809-76796828 MsG0180004352.01.T01:intron 40.0%
CCTTCCAAATGCATATCTTC+TGG + Chr1:76796423-76796442 None:intergenic 40.0%
CGTAACATTGGCAAAGTTAG+GGG + Chr1:76800339-76800358 None:intergenic 40.0%
CTACTACGAACTTAGAGCAA+GGG + Chr1:76796537-76796556 None:intergenic 40.0%
CTTGAGATTGCCATGACATT+TGG - Chr1:76798668-76798687 MsG0180004352.01.T01:CDS 40.0%
GAAGATTTGTCCTCTAGTTG+AGG - Chr1:76799781-76799800 MsG0180004352.01.T01:intron 40.0%
GAGATGGATAAAAATAGGGG+AGG - Chr1:76798513-76798532 MsG0180004352.01.T01:CDS 40.0%
GAGGGGAACAAATAAGGAAA+AGG + Chr1:76796918-76796937 None:intergenic 40.0%
GCAACCAGAAGATATGCATT+TGG - Chr1:76796416-76796435 MsG0180004352.01.T01:CDS 40.0%
GGCATTATCATTGGATCTTC+TGG - Chr1:76798867-76798886 MsG0180004352.01.T01:intron 40.0%
GGCCACCACCAAAAAAAAAA+TGG + Chr1:76797480-76797499 None:intergenic 40.0%
GGGAACAAATAAGGAAAAGG+TGG + Chr1:76796915-76796934 None:intergenic 40.0%
GTAACATTGGCAAAGTTAGG+GGG + Chr1:76800338-76800357 None:intergenic 40.0%
TATCATTGGATCTTCTGGGT+GGG - Chr1:76798872-76798891 MsG0180004352.01.T01:intron 40.0%
TCATCTAGCATGCATGTATC+TGG - Chr1:76796729-76796748 MsG0180004352.01.T01:CDS 40.0%
TCCATCTAAACGTTGTGTGA+GGG + Chr1:76799391-76799410 None:intergenic 40.0%
TCCTTAGAGCTGTCTACTAT+TGG - Chr1:76796808-76796827 MsG0180004352.01.T01:intron 40.0%
TCGAAGTTGTTGGAAATTGG+CGG + Chr1:76800739-76800758 None:intergenic 40.0%
TGACTTAGTCAATGCCTATG+TGG - Chr1:76800440-76800459 MsG0180004352.01.T01:intron 40.0%
TTATCATTGGATCTTCTGGG+TGG - Chr1:76798871-76798890 MsG0180004352.01.T01:intron 40.0%
TTCATGCATGCTCCATCAAA+TGG + Chr1:76798806-76798825 None:intergenic 40.0%
TTCCTATGAAAGAGGAGGTT+CGG - Chr1:76797835-76797854 MsG0180004352.01.T01:intron 40.0%
! GTGGTTGGTTGAATTAATGC+AGG - Chr1:76796621-76796640 MsG0180004352.01.T01:CDS 40.0%
! TATTGGGTTGCTCAACTTCT+TGG - Chr1:76796825-76796844 MsG0180004352.01.T01:intron 40.0%
! TGATGAGGATTAGTATGAGG+AGG + Chr1:76798959-76798978 None:intergenic 40.0%
!! ATCAACCCTGCAGTTACTTT+TGG - Chr1:76796759-76796778 MsG0180004352.01.T01:CDS 40.0%
!! GTTAGGTTCGAAAGTGTCTA+TGG + Chr1:76800636-76800655 None:intergenic 40.0%
!! TTACTCTTTGTAAAGGTGCC+TGG - Chr1:76799651-76799670 MsG0180004352.01.T01:intron 40.0%
!! TTCAATGTGGCATTTGGTGT+TGG - Chr1:76798626-76798645 MsG0180004352.01.T01:CDS 40.0%
!!! GTTACTTTTGGTGCTCTTCT+TGG - Chr1:76796771-76796790 MsG0180004352.01.T01:CDS 40.0%
!!! TTTTTTTTTTGGTGGTGGCC+GGG - Chr1:76797480-76797499 MsG0180004352.01.T01:intron 40.0%
AAGTTGTTGGAAATTGGCGG+CGG + Chr1:76800736-76800755 None:intergenic 45.0%
ACGGTTGCTCTTATGGAATC+TGG + Chr1:76796464-76796483 None:intergenic 45.0%
ACTGCCATTGATCCCAAAAG+AGG - Chr1:76798713-76798732 MsG0180004352.01.T01:CDS 45.0%
AGATGGAAAACGCCGCAAAA+TGG - Chr1:76800854-76800873 MsG0180004352.01.T01:intron 45.0%
ATACACCACACCGCTTTCTA+TGG - Chr1:76799858-76799877 MsG0180004352.01.T01:intron 45.0%
CAATACCATAGAAAGCGGTG+TGG + Chr1:76799866-76799885 None:intergenic 45.0%
CATAAGCTAGCAAGCAACGT+AGG + Chr1:76799083-76799102 None:intergenic 45.0%
CCCAATAGTAGACAGCTCTA+AGG + Chr1:76796812-76796831 None:intergenic 45.0%
CCTCTTTCATAGGAAGAACC+CGG + Chr1:76797830-76797849 None:intergenic 45.0%
CGTAGGAAGTTCGAAGTTGT+TGG + Chr1:76800749-76800768 None:intergenic 45.0%
CTCTTTCATAGGAAGAACCC+GGG + Chr1:76797829-76797848 None:intergenic 45.0%
CTTTGCAGGCAAGTCTTTCA+CGG - Chr1:76799890-76799909 MsG0180004352.01.T01:intron 45.0%
GACCCGGTCTTTATACAATG+AGG + Chr1:76800139-76800158 None:intergenic 45.0%
GAGCACCAAAAGTAACTGCA+GGG + Chr1:76796767-76796786 None:intergenic 45.0%
GCTATTGCAGCTCCTAGAAA+TGG + Chr1:76798899-76798918 None:intergenic 45.0%
GCTGGAGATGGCATTATCAT+TGG - Chr1:76798858-76798877 MsG0180004352.01.T01:intron 45.0%
GGGAAGATATACAAGGATGC+AGG - Chr1:76796642-76796661 MsG0180004352.01.T01:CDS 45.0%
GGTTCTTCCTATGAAAGAGG+AGG - Chr1:76797830-76797849 MsG0180004352.01.T01:intron 45.0%
GTTGGAGCAAACATTCTAGC+TGG - Chr1:76798776-76798795 MsG0180004352.01.T01:CDS 45.0%
TACATGAGGCCAATTATGGG+TGG + Chr1:76797624-76797643 None:intergenic 45.0%
TCCCTCACACAACGTTTAGA+TGG - Chr1:76799387-76799406 MsG0180004352.01.T01:intron 45.0%
TCGTCTATACCAACTGAGCT+AGG - Chr1:76797535-76797554 MsG0180004352.01.T01:intron 45.0%
TCTAGCATGCATGTATCTGG+TGG - Chr1:76796732-76796751 MsG0180004352.01.T01:CDS 45.0%
TGCATTTGGAAGGATGGATG+AGG - Chr1:76796430-76796449 MsG0180004352.01.T01:CDS 45.0%
TGCCTCTTAAATTGCCTCGT+AGG + Chr1:76797921-76797940 None:intergenic 45.0%
TGCTATGCATGCGAAGAAAG+CGG - Chr1:76800992-76801011 MsG0180004352.01.T01:CDS 45.0%
TTAGTATGAGGAGGCTCAAC+TGG + Chr1:76798950-76798969 None:intergenic 45.0%
TTCAGCTACGGTTGCTCTTA+TGG + Chr1:76796471-76796490 None:intergenic 45.0%
TTGCCTGTTATAGAGACCAC+AGG - Chr1:76798601-76798620 MsG0180004352.01.T01:CDS 45.0%
TTTCATGCGATACGACCAGA+TGG + Chr1:76798450-76798469 None:intergenic 45.0%
TTTGTCAGGGTGGAGTTCTA+GGG + Chr1:76800694-76800713 None:intergenic 45.0%
! AGAGCACCAAAAGTAACTGC+AGG + Chr1:76796768-76796787 None:intergenic 45.0%
! GCTTTTGGACCTGCTTTAGT+GGG - Chr1:76798836-76798855 MsG0180004352.01.T01:intron 45.0%
! TAAGGGTGCAATTGTGCCAA+TGG + Chr1:76798741-76798760 None:intergenic 45.0%
! TAGTGGCTGCCCTTTTATTG+AGG - Chr1:76796853-76796872 MsG0180004352.01.T01:intron 45.0%
!! CTTTGTAAAGGTGCCTGGTT+GGG - Chr1:76799656-76799675 MsG0180004352.01.T01:intron 45.0%
!! TCTTTGTAAAGGTGCCTGGT+TGG - Chr1:76799655-76799674 MsG0180004352.01.T01:intron 45.0%
!!! ACTTTTGGTGCTCTTCTTGG+TGG - Chr1:76796774-76796793 MsG0180004352.01.T01:CDS 45.0%
!!! TTTTTTTTTGGTGGTGGCCG+GGG - Chr1:76797481-76797500 MsG0180004352.01.T01:intron 45.0%
!!! AAAATTTTCATTTTTTTAAT+AGG + Chr1:76800372-76800391 None:intergenic 5.0%
!!! AAATTTTCATTTTTTTAATA+GGG + Chr1:76800371-76800390 None:intergenic 5.0%
!!! AATTTTCAAAATATAAAATT+TGG + Chr1:76800269-76800288 None:intergenic 5.0%
!!! ATTTTATTTTGAAATAAAAT+TGG - Chr1:76797042-76797061 MsG0180004352.01.T01:intron 5.0%
!!! TTTTATTTTGAAATAAAATT+GGG - Chr1:76797043-76797062 MsG0180004352.01.T01:intron 5.0%
AACGTTGTGTGAGGGACTTG+AGG + Chr1:76799383-76799402 None:intergenic 50.0%
AAGGATGCAGGTGCATCATC+TGG - Chr1:76796654-76796673 MsG0180004352.01.T01:CDS 50.0%
AATGCCACATTGAACGCCTG+TGG + Chr1:76798620-76798639 None:intergenic 50.0%
ACACATGTGGCATGCCACAT+AGG + Chr1:76800457-76800476 None:intergenic 50.0%
ACGCCTGTGGTCTCTATAAC+AGG + Chr1:76798607-76798626 None:intergenic 50.0%
AGCCGAACCTCCTCTTTCAT+AGG + Chr1:76797840-76797859 None:intergenic 50.0%
AGTTGAGGGCTTGAGGCTAT+GGG - Chr1:76799796-76799815 MsG0180004352.01.T01:intron 50.0%
CAGGCGTTCAATGTGGCATT+TGG - Chr1:76798620-76798639 MsG0180004352.01.T01:CDS 50.0%
CCGGGTTCTTCCTATGAAAG+AGG - Chr1:76797827-76797846 MsG0180004352.01.T01:intron 50.0%
CGTCGTGAATCACTACGAGA+TGG - Chr1:76800837-76800856 MsG0180004352.01.T01:intron 50.0%
GAGTGGGGTGTATTCACATC+TGG - Chr1:76798309-76798328 MsG0180004352.01.T01:intron 50.0%
GCATCTCTCATCAAGAGGGT+TGG - Chr1:76800206-76800225 MsG0180004352.01.T01:intron 50.0%
GCTATGCATGCGAAGAAAGC+GGG - Chr1:76800993-76801012 MsG0180004352.01.T01:CDS 50.0%
GGAAGAACCCGGGATTAACT+AGG + Chr1:76797819-76797838 None:intergenic 50.0%
GGAGCTGGTTATGCTCTTGA+AGG - Chr1:76801014-76801033 MsG0180004352.01.T01:CDS 50.0%
GGAGTTATGCTTGAGGAGAG+AGG + Chr1:76800589-76800608 None:intergenic 50.0%
GGGGGCCAAAATCGTAACAT+TGG + Chr1:76800351-76800370 None:intergenic 50.0%
GTTTGTCAGGGTGGAGTTCT+AGG + Chr1:76800695-76800714 None:intergenic 50.0%
TAGTTGAGGGCTTGAGGCTA+TGG - Chr1:76799795-76799814 MsG0180004352.01.T01:intron 50.0%
TGCATCATCTGGTGAGCTAG+TGG - Chr1:76796665-76796684 MsG0180004352.01.T01:CDS 50.0%
TTCTGGGTGGGTCCATTTCT+AGG - Chr1:76798884-76798903 MsG0180004352.01.T01:intron 50.0%
! AAATTTTGCGGCGAGAGGGA+GGG - Chr1:76800917-76800936 MsG0180004352.01.T01:CDS 50.0%
! CTAGCTGGTGGACCATTTGA+TGG - Chr1:76798791-76798810 MsG0180004352.01.T01:CDS 50.0%
! CTCCAAATTTTGCGGCGAGA+GGG - Chr1:76800913-76800932 MsG0180004352.01.T01:CDS 50.0%
! GGAGCAAACATTCTAGCTGG+TGG - Chr1:76798779-76798798 MsG0180004352.01.T01:CDS 50.0%
! GGCTTTTGGACCTGCTTTAG+TGG - Chr1:76798835-76798854 MsG0180004352.01.T01:intron 50.0%
! GTGCCAATGGTGCCTCTTTT+GGG + Chr1:76798728-76798747 None:intergenic 50.0%
! TCTCCAAATTTTGCGGCGAG+AGG - Chr1:76800912-76800931 MsG0180004352.01.T01:CDS 50.0%
! TGTGCCAATGGTGCCTCTTT+TGG + Chr1:76798729-76798748 None:intergenic 50.0%
!! GATCCCAAAAGAGGCACCAT+TGG - Chr1:76798722-76798741 MsG0180004352.01.T01:CDS 50.0%
!! GGAGCCAAAGGTTGATGATG+AGG + Chr1:76798974-76798993 None:intergenic 50.0%
!! TGGCATTTGGTGTTGGTGCT+GGG - Chr1:76798633-76798652 MsG0180004352.01.T01:CDS 50.0%
!!! GGTGCCTCTTTTGGGATCAA+TGG + Chr1:76798720-76798739 None:intergenic 50.0%
AGCATGCATGAACCCTGCTC+GGG - Chr1:76798814-76798833 MsG0180004352.01.T01:CDS 55.0%
AGCCTCAAGCCCTCAACTAG+AGG + Chr1:76799794-76799813 None:intergenic 55.0%
CATCTCCAGCCCACTAAAGC+AGG + Chr1:76798848-76798867 None:intergenic 55.0%
CGCATGCATAGCACGAATCC+TGG + Chr1:76800985-76801004 None:intergenic 55.0%
CTCCCTCTCGCCGCAAAATT+TGG + Chr1:76800918-76800937 None:intergenic 55.0%
GAGACCACAGGCGTTCAATG+TGG - Chr1:76798613-76798632 MsG0180004352.01.T01:CDS 55.0%
GAGCATGCATGAACCCTGCT+CGG - Chr1:76798813-76798832 MsG0180004352.01.T01:CDS 55.0%
GTCCTCTAGTTGAGGGCTTG+AGG - Chr1:76799789-76799808 MsG0180004352.01.T01:intron 55.0%
GTTGTGTGAGGGACTTGAGG+TGG + Chr1:76799380-76799399 None:intergenic 55.0%
TCACTCACCTCAACCCAACC+AGG + Chr1:76799672-76799691 None:intergenic 55.0%
TGCTTGAGGAGAGAGGAGAG+AGG + Chr1:76800582-76800601 None:intergenic 55.0%
! ATGAACCCTGCTCGGGCTTT+TGG - Chr1:76798821-76798840 MsG0180004352.01.T01:intron 55.0%
! CAAATTTTGCGGCGAGAGGG+AGG - Chr1:76800916-76800935 MsG0180004352.01.T01:CDS 55.0%
! TTGGACCTGCTTTAGTGGGC+TGG - Chr1:76798840-76798859 MsG0180004352.01.T01:intron 55.0%
!! AAAGGTGCCTGGTTGGGTTG+AGG - Chr1:76799662-76799681 MsG0180004352.01.T01:intron 55.0%
!! AGGGTGGAGTTCTAGGGCTT+TGG + Chr1:76800688-76800707 None:intergenic 55.0%
!! CTGCTTTAGTGGGCTGGAGA+TGG - Chr1:76798846-76798865 MsG0180004352.01.T01:intron 55.0%
!! GTGGCATTTGGTGTTGGTGC+TGG - Chr1:76798632-76798651 MsG0180004352.01.T01:CDS 55.0%
CAGGTCCAAAAGCCCGAGCA+GGG + Chr1:76798829-76798848 None:intergenic 60.0%
CATGCGAAGAAAGCGGGAGC+TGG - Chr1:76800999-76801018 MsG0180004352.01.T01:CDS 60.0%
TGGAAATTGGCGGCGGCGTT+GGG + Chr1:76800729-76800748 None:intergenic 60.0%
TTGGAAATTGGCGGCGGCGT+TGG + Chr1:76800730-76800749 None:intergenic 60.0%
! AAGGTCTGGGGTTCGAACCC+CGG + Chr1:76797501-76797520 None:intergenic 60.0%
! GGTCATCGGGGCGTTTGTCA+GGG + Chr1:76800707-76800726 None:intergenic 60.0%
GCAGGTCCAAAAGCCCGAGC+AGG + Chr1:76798830-76798849 None:intergenic 65.0%
GGAAATTGGCGGCGGCGTTG+GGG + Chr1:76800728-76800747 None:intergenic 65.0%
! CATCGGGGCGTTTGTCAGGG+TGG + Chr1:76800704-76800723 None:intergenic 65.0%
! GGGTCATCGGGGCGTTTGTC+AGG + Chr1:76800708-76800727 None:intergenic 65.0%
GGCGAGAGGGAGGGAAGAGG+AGG - Chr1:76800926-76800945 MsG0180004352.01.T01:CDS 70.0%
TGCGGCGAGAGGGAGGGAAG+AGG - Chr1:76800923-76800942 MsG0180004352.01.T01:CDS 70.0%
! CGGCGGCGTTGGGGTCATCG+GGG + Chr1:76800719-76800738 None:intergenic 75.0%
! GCGGCGGCGTTGGGGTCATC+GGG + Chr1:76800720-76800739 None:intergenic 75.0%
! GGCGGCGGCGTTGGGGTCAT+CGG + Chr1:76800721-76800740 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 76796413 76801040 76796413 ID=MsG0180004352.01;Name=MsG0180004352.01
Chr1 mRNA 76796413 76801040 76796413 ID=MsG0180004352.01.T01;Parent=MsG0180004352.01;Name=MsG0180004352.01.T01;_AED=0.34;_eAED=0.37;_QI=0|0|0|1|1|1|5|0|414
Chr1 exon 76800908 76801040 76800908 ID=MsG0180004352.01.T01:exon:12703;Parent=MsG0180004352.01.T01
Chr1 exon 76800560 76800810 76800560 ID=MsG0180004352.01.T01:exon:12702;Parent=MsG0180004352.01.T01
Chr1 exon 76798448 76798839 76798448 ID=MsG0180004352.01.T01:exon:12701;Parent=MsG0180004352.01.T01
Chr1 exon 76798185 76798251 76798185 ID=MsG0180004352.01.T01:exon:12700;Parent=MsG0180004352.01.T01
Chr1 exon 76796413 76796814 76796413 ID=MsG0180004352.01.T01:exon:12699;Parent=MsG0180004352.01.T01
Chr1 CDS 76800908 76801040 76800908 ID=MsG0180004352.01.T01:cds;Parent=MsG0180004352.01.T01
Chr1 CDS 76800560 76800810 76800560 ID=MsG0180004352.01.T01:cds;Parent=MsG0180004352.01.T01
Chr1 CDS 76798448 76798839 76798448 ID=MsG0180004352.01.T01:cds;Parent=MsG0180004352.01.T01
Chr1 CDS 76798185 76798251 76798185 ID=MsG0180004352.01.T01:cds;Parent=MsG0180004352.01.T01
Chr1 CDS 76796413 76796814 76796413 ID=MsG0180004352.01.T01:cds;Parent=MsG0180004352.01.T01
Gene Sequence

>MsG0180004352.01.T01

ATGGCAACCAGAAGATATGCATTTGGAAGGATGGATGAGGCAAATCATCCAGATTCCATAAGAGCAACCGTAGCTGAATTTTTCTCAACTTGCATCTTTGTCTTTGCTGGAGAAGGATCTGCCCTTGCTCTAAGGAAGATATACAAGGATGCAGGTGCATCATCTGGTGAGCTAGTGGTACTTGCACTAGCTCATGCATTTTCACTATTTGCAGCTATATCATCTAGCATGCATGTATCTGGTGGACATATCAACCCTGCAGTTACTTTTGGTGCTCTTCTTGGTGGTAGAATCTCTGTCCTTAGAGCTGTCTACTATTGGGTTGCTCAACTTCTTGGTTCTTTAGTGGCTGCCCTTTTATTGAGGCTTGTCACTAATAATATGAGACCACAGGCGTTCAATGTGGCATTTGGTGTTGGTGCTGGGAACGCTCTTGTACTTGAGATTGCCATGACATTTGGATTAATGTATGTTGTGTATGCAACTGCCATTGATCCCAAAAGAGGCACCATTGGCACAATTGCACCCTTAGCAATTGCACTAGTAGTTGGAGCAAACATTCTAGCTGGTGGACCATTTGATGGAGCATGCATGAACCCTGCTCGGGCTTTTGGACCTGCTTTAGTGGGCTGGAGATGGCATTATCATTGGATCTTCTGGGTGGGTCCATTTCTAGGAGCTGCAATAGCAGCACTTTTATATGAATACATTATGGTTCCAGTTGAGCCTCCTCATACTAATCCTCATCATCAACCTTTGGCTCCTGAAGATTATTATGTGCAGAGGTTGTTGTCTTCTATGCTTTTGAATAAAGTCAGTCCTGTTACTCCTGTAAAGTTAAATACACTTTCGAACCTAACCCAAAAAGACATCAACAAAGCTTACAAATCCAAAGCCCTAGAACTCCACCCTGACAAACGCCCCGATGACCCCAACGCCGCCGCCAATTTCCAACAACTTCGAACTTCCTACGATATCCTCAAAGATGAAAAAGCTAGCAAATTATTCGACGATCTTCTCTGTGTAAAGCACGAAAATCAACGTCGTGAATCACTACGAGATGGAAAACGCCGCAAAATGGTTTTCGATCTTAAAAAGAGAGAGTGTGAAGCTTTTTCTCCAAATTTTGCGGCGAGAGGGAGGGAAGAGGAGGATAAGATTGCGAAGAAGTTGAATGATGAGATTGCCAGGATTCGTGCTATGCATGCGAAGAAAGCGGGAGCTGGTTATGCTCTTGAAGGATGA
Protein sequence

>MsG0180004352.01.T01

MATRRYAFGRMDEANHPDSIRATVAEFFSTCIFVFAGEGSALALRKIYKDAGASSGELVVLALAHAFSLFAAISSSMHVSGGHINPAVTFGALLGGRISVLRAVYYWVAQLLGSLVAALLLRLVTNNMRPQAFNVAFGVGAGNALVLEIAMTFGLMYVVYATAIDPKRGTIGTIAPLAIALVVGANILAGGPFDGACMNPARAFGPALVGWRWHYHWIFWVGPFLGAAIAALLYEYIMVPVEPPHTNPHHQPLAPEDYYVQRLLSSMLLNKVSPVTPVKLNTLSNLTQKDINKAYKSKALELHPDKRPDDPNAAANFQQLRTSYDILKDEKASKLFDDLLCVKHENQRRESLRDGKRRKMVFDLKKRECEAFSPNFAARGREEEDKIAKKLNDEIARIRAMHAKKAGAGYALEG*