AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005801.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005801.01.T01 MTR_1g107330 74.411 297 7 2 10 237 109 405 1.22e-149 423
MsG0180005801.01.T01 MTR_1g107330 72.785 158 6 1 10 130 109 266 2.71e-71 221
MsG0180005801.01.T01 MTR_5g084950 29.310 290 130 5 15 229 111 400 1.42e-41 146
MsG0180005801.01.T01 MTR_7g029365 28.767 292 133 5 15 231 121 412 1.15e-37 136
MsG0180005801.01.T01 MTR_3g081060 30.201 298 131 5 10 230 113 410 6.54e-36 131
MsG0180005801.01.T01 MTR_7g081050 28.000 300 133 7 10 230 109 404 2.73e-33 124
MsG0180005801.01.T01 MTR_6g033965 29.897 291 127 6 15 230 115 403 1.04e-32 122
MsG0180005801.01.T01 MTR_7g081060 28.276 290 132 5 15 229 115 403 6.17e-31 118
MsG0180005801.01.T01 MTR_3g081040 27.273 297 140 5 10 230 109 405 8.86e-31 117
MsG0180005801.01.T01 MTR_6g023715 26.182 275 141 5 15 229 121 393 3.31e-29 113
MsG0180005801.01.T01 MTR_6g023740 25.342 292 141 5 15 229 121 412 1.20e-28 112
MsG0180005801.01.T01 MTR_3g080980 26.689 296 142 6 10 230 109 404 1.97e-27 108
MsG0180005801.01.T01 MTR_6g033975 29.655 290 128 8 15 230 115 402 2.53e-27 108
MsG0180005801.01.T01 MTR_6g023750 25.342 292 141 7 15 229 64 355 5.13e-23 95.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005801.01.T01 AT2G15230 47.635 296 86 2 10 236 97 392 1.05e-88 268
MsG0180005801.01.T01 AT5G14180 28.621 290 132 5 15 229 17 306 1.29e-36 131
MsG0180005801.01.T01 AT5G14180 28.621 290 132 5 15 229 26 315 1.91e-36 131
MsG0180005801.01.T01 AT5G14180 28.621 290 132 5 15 229 126 415 6.34e-36 131

Find 111 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATTGGTGAAACAGAATT+TGG 0.182173 1:+96289775 MsG0180005801.01.T01:five_prime_UTR
CAGAGAGTTGGTTGTTGTTT+GGG 0.186644 1:-96289885 None:intergenic
TTGCCTTTGTTGATGGCTTA+TGG 0.191042 1:+96295021 MsG0180005801.01.T01:CDS
TTATATTACATTCATCTTAA+TGG 0.199327 1:-96295247 None:intergenic
CAGATCATTGCCTTTGTTGA+TGG 0.268391 1:+96295014 MsG0180005801.01.T01:CDS
ACCTTCTCCAAGTACGATTA+TGG 0.280197 1:+96294925 MsG0180005801.01.T01:CDS
ACAAAGGATGGTTTCTTGTT+AGG 0.282718 1:+96290069 MsG0180005801.01.T01:five_prime_UTR
ACAGAGAGTTGGTTGTTGTT+TGG 0.284882 1:-96289886 None:intergenic
TGCCTTTGTTGATGGCTTAT+GGG 0.286118 1:+96295022 MsG0180005801.01.T01:CDS
ATATGATCCAAGTATGAAAT+TGG 0.303318 1:-96292425 None:intergenic
TTCACCAATCCTATTATTGA+TGG 0.307707 1:-96289764 None:intergenic
CCTCTTATCATTCAATGGTT+TGG 0.307944 1:-96295425 None:intergenic
GCTTCTCCATGGCCTATTCA+TGG 0.309670 1:+96290182 MsG0180005801.01.T01:five_prime_UTR
CCATCATCACCATCAATAAT+AGG 0.311385 1:+96289755 MsG0180005801.01.T01:five_prime_UTR
ATGCGGCTAAGGTCAAATTT+TGG 0.319645 1:-96294988 None:intergenic
CCAAACCATTGAATGATAAG+AGG 0.331508 1:+96295425 MsG0180005801.01.T01:three_prime_UTR
TTGGTTTGCTACTAATTGAT+TGG 0.341793 1:+96295368 MsG0180005801.01.T01:three_prime_UTR
TCTGTCTCCAATTTCATACT+TGG 0.350785 1:+96292418 MsG0180005801.01.T01:CDS
GGATTGGTGAAACAGAATTT+GGG 0.356943 1:+96289776 MsG0180005801.01.T01:five_prime_UTR
TTGAAGTTAAAACCATTGTT+TGG 0.360541 1:+96295391 MsG0180005801.01.T01:three_prime_UTR
ATCAGTTTCTTCAAGTCAAT+GGG 0.364667 1:+96295192 MsG0180005801.01.T01:CDS
CATCAGTTTCTTCAAGTCAA+TGG 0.364835 1:+96295191 MsG0180005801.01.T01:CDS
GGATCATATTAGTGCACCTT+TGG 0.375065 1:+96292439 MsG0180005801.01.T01:CDS
TGCACCTTTGGTACTAAGAA+TGG 0.380394 1:+96292451 MsG0180005801.01.T01:CDS
CACAGAAGTATTTACTGTCT+TGG 0.380650 1:+96295349 MsG0180005801.01.T01:three_prime_UTR
GCAAAGAAAATAGTATATAA+AGG 0.402286 1:-96295524 None:intergenic
ATCTTTATCAGAGAAGAATA+AGG 0.417364 1:+96291059 MsG0180005801.01.T01:CDS
ACATAAGGAAATCAAGAGAT+TGG 0.417842 1:-96292741 None:intergenic
GACATGCTGTCATCCATTAC+AGG 0.418206 1:+96292785 MsG0180005801.01.T01:CDS
GTGGTTTATCTTGAAAACTA+TGG 0.418535 1:+96295114 MsG0180005801.01.T01:CDS
AGTAAGTAGTAACCATGAAT+AGG 0.420033 1:-96290194 None:intergenic
AAATACACCAGAACAATCAT+TGG 0.421081 1:+96290961 MsG0180005801.01.T01:CDS
AAGCTTTCCATAATCGTACT+TGG 0.430219 1:-96294932 None:intergenic
GGAAAAGATGCACATTGATC+AGG 0.447013 1:+96292472 MsG0180005801.01.T01:CDS
GGGTGCGCTGCCGCCGTCGA+AGG 0.448632 1:-96289862 None:intergenic
CATCAACAAAGGCAATGATC+TGG 0.449214 1:-96295013 None:intergenic
TTCATCAGCTGAATTTCAAA+AGG 0.450695 1:+96292598 MsG0180005801.01.T01:CDS
AGTGATATATACTCACAGTA+TGG 0.454131 1:-96295552 None:intergenic
GTTTCCGAAGGATAAGAGTA+TGG 0.460626 1:-96289829 None:intergenic
GGGCTTCATCCTGCGGATCA+AGG 0.472579 1:+96290982 MsG0180005801.01.T01:CDS
GACTTGAAGAAACTGATGAT+AGG 0.472607 1:-96295186 None:intergenic
AGAGAGTTGGTTGTTGTTTG+GGG 0.478775 1:-96289884 None:intergenic
ATGAAGCCCAATGATTGTTC+TGG 0.479529 1:-96290968 None:intergenic
AGGCCATGGAGAAGCAGAAC+CGG 0.486022 1:-96290174 None:intergenic
GCCTTTGTTGATGGCTTATG+GGG 0.492263 1:+96295023 MsG0180005801.01.T01:CDS
ATGATCTGGGTATGCGGCTA+AGG 0.493826 1:-96294999 None:intergenic
ATCACCATCAATAATAGGAT+TGG 0.503513 1:+96289760 MsG0180005801.01.T01:five_prime_UTR
ATTGCCATACTCTTATCCTT+CGG 0.509142 1:+96289825 MsG0180005801.01.T01:five_prime_UTR
CCTCCGGTTCTGCTTCTCCA+TGG 0.509579 1:+96290171 MsG0180005801.01.T01:five_prime_UTR
ATATACTCACAGTATGGTAA+TGG 0.514581 1:-96295546 None:intergenic
TTACTTTCAGATTGAAACAA+AGG 0.517112 1:+96290053 MsG0180005801.01.T01:intron
TCAACCGGATATAGTAGAAA+AGG 0.520659 1:+96292379 MsG0180005801.01.T01:CDS
TGTTCAGATGATTGCTACAA+TGG 0.521008 1:+96292572 MsG0180005801.01.T01:intron
CCTATTATTGATGGTGATGA+TGG 0.523869 1:-96289755 None:intergenic
GTTCAGATGATTGCTACAAT+GGG 0.525033 1:+96292573 MsG0180005801.01.T01:intron
CTCTCAGTGAAGATGTAGAA+AGG 0.527326 1:+96295462 MsG0180005801.01.T01:three_prime_UTR
CAGTGAAGATGTAGAAAGGA+TGG 0.528452 1:+96295466 MsG0180005801.01.T01:three_prime_UTR
CTGATAAAGATTTATGTCCA+TGG 0.529374 1:-96291047 None:intergenic
TGAGAGACATGAACCTGTAA+TGG 0.530576 1:-96292798 None:intergenic
ACAACAACAACGAGGTCCTC+CGG 0.531545 1:+96290155 MsG0180005801.01.T01:five_prime_UTR
TACTATATCCGGTTGAGTGA+AGG 0.532690 1:-96292372 None:intergenic
ATCAACAAAGGCAATGATCT+GGG 0.532780 1:-96295012 None:intergenic
AGAGTTGGTTGTTGTTTGGG+GGG 0.532934 1:-96289882 None:intergenic
ACTTGAAGAAACTGATGATA+GGG 0.535072 1:-96295185 None:intergenic
GCAGTTCCTTGAGTGTGTGC+TGG 0.538191 1:-96295077 None:intergenic
TCCATAATCGTACTTGGAGA+AGG 0.540057 1:-96294926 None:intergenic
AATACACCAGAACAATCATT+GGG 0.543527 1:+96290962 MsG0180005801.01.T01:CDS
ACATCAAAACCTTGATCCGC+AGG 0.546446 1:-96290991 None:intergenic
TTACCCTTGCTCTGAATATG+TGG 0.550867 1:+96289932 MsG0180005801.01.T01:five_prime_UTR
ATGAGTTCATCACAGAGAGT+TGG 0.551768 1:-96289897 None:intergenic
GAGAGTTGGTTGTTGTTTGG+GGG 0.553474 1:-96289883 None:intergenic
TTTCAGATTGAAACAAAGGA+TGG 0.556157 1:+96290057 MsG0180005801.01.T01:intron
ATTACATTCATCTTAATGGA+AGG 0.556575 1:-96295243 None:intergenic
CAAACCATTGAATGATAAGA+GGG 0.556879 1:+96295426 MsG0180005801.01.T01:three_prime_UTR
ACTTAGACGAGTATCACATA+AGG 0.561077 1:-96292756 None:intergenic
GGAGTGCACCACTGATATGA+AGG 0.565592 1:+96295487 MsG0180005801.01.T01:three_prime_UTR
CAAGACAGTAAATACTTCTG+TGG 0.566209 1:-96295348 None:intergenic
TAGATTCATTAAACATACAG+TGG 0.569806 1:+96295277 MsG0180005801.01.T01:three_prime_UTR
TAGTAACCATGAATAGGCCA+TGG 0.571896 1:-96290188 None:intergenic
TAAACCACCTCAGGTGTGGA+TGG 0.574032 1:-96295099 None:intergenic
CGTGGAACACGTTGGAGCCA+TGG 0.574865 1:+96291030 MsG0180005801.01.T01:CDS
GATGAACTCATTCTTCCCGC+TGG 0.577409 1:+96289909 MsG0180005801.01.T01:five_prime_UTR
AATCATTGGGCTTCATCCTG+CGG 0.581553 1:+96290975 MsG0180005801.01.T01:CDS
AGTAATAACCTTCATATCAG+TGG 0.583808 1:-96295495 None:intergenic
ACTTGGAGAAGGTACCTTTG+CGG 0.586271 1:-96294915 None:intergenic
AATACCACATATTCAGAGCA+AGG 0.587448 1:-96289936 None:intergenic
AAGATAAACCACCTCAGGTG+TGG 0.587694 1:-96295103 None:intergenic
TCAGAGCAAGGGTAACCAGC+GGG 0.589366 1:-96289924 None:intergenic
GTATATATCACTAATTATTG+AGG 0.599896 1:+96295563 MsG0180005801.01.T01:three_prime_UTR
GATTGGTGAAACAGAATTTG+GGG 0.607741 1:+96289777 MsG0180005801.01.T01:five_prime_UTR
ACAATCAGGCAGGTGATGCA+TGG 0.608662 1:+96290933 MsG0180005801.01.T01:intron
AAGACAGTAAATACTTCTGT+GGG 0.608764 1:-96295347 None:intergenic
AACATCGCTCACTCCTTCGA+CGG 0.610140 1:+96289849 MsG0180005801.01.T01:five_prime_UTR
ATCGCTCACTCCTTCGACGG+CGG 0.610445 1:+96289852 MsG0180005801.01.T01:five_prime_UTR
TGATTTCCAGCACACACTCA+AGG 0.617911 1:+96295071 MsG0180005801.01.T01:CDS
ACTGCCATCCACACCTGAGG+TGG 0.635259 1:+96295095 MsG0180005801.01.T01:CDS
AAGGCAATGATCTGGGTATG+CGG 0.641163 1:-96295005 None:intergenic
TTACAGACACAACATCAAAG+TGG 0.645873 1:-96295307 None:intergenic
AGACACAACATCAAAGTGGA+CGG 0.649083 1:-96295303 None:intergenic
TGTTCTCCAGTGATCCGCAA+AGG 0.657082 1:+96294901 MsG0180005801.01.T01:intron
ATACCACATATTCAGAGCAA+GGG 0.659010 1:-96289935 None:intergenic
CCTTTGTTGATGGCTTATGG+GGG 0.663104 1:+96295024 MsG0180005801.01.T01:CDS
GGAGTGAGCGATGTTTCCGA+AGG 0.667016 1:-96289841 None:intergenic
GGAACTGCCATCCACACCTG+AGG 0.674091 1:+96295092 MsG0180005801.01.T01:CDS
ATTATTGATGGTGATGATGG+TGG 0.675186 1:-96289752 None:intergenic
TTCAGAGCAAGGGTAACCAG+CGG 0.686767 1:-96289925 None:intergenic
ATTGGTGAAACAGAATTTGG+GGG 0.689686 1:+96289778 MsG0180005801.01.T01:five_prime_UTR
CCATGGAGAAGCAGAACCGG+AGG 0.690082 1:-96290171 None:intergenic
TCAGTTTCTTCAAGTCAATG+GGG 0.699933 1:+96295193 MsG0180005801.01.T01:CDS
GAAATGTGCGTGGAACACGT+TGG 0.739556 1:+96291022 MsG0180005801.01.T01:CDS
GTTTGGGTAGGAAATGTGCG+TGG 0.748523 1:+96291012 MsG0180005801.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTGATGTAAAAAATAT+AGG + Chr1:96293104-96293123 MsG0180005801.01.T01:intron 10.0%
!!! AGAAAAAAACAATTTTATTT+AGG + Chr1:96293490-96293509 MsG0180005801.01.T01:intron 10.0%
!!! ATATTTTTTACATCAATAAT+GGG - Chr1:96293104-96293123 None:intergenic 10.0%
!!! TATATTTTTTACATCAATAA+TGG - Chr1:96293105-96293124 None:intergenic 10.0%
!! AATGAAAAGTTATTTATGTT+TGG - Chr1:96290643-96290662 None:intergenic 15.0%
!! ATAAATTAATATATGTGTAG+CGG - Chr1:96293139-96293158 None:intergenic 15.0%
!! TCTATTTATAAATTGCTAAA+AGG + Chr1:96294740-96294759 MsG0180005801.01.T01:intron 15.0%
!! TTATATTACATTCATCTTAA+TGG - Chr1:96295250-96295269 None:intergenic 15.0%
!!! AATTAGTTTCAAACTTTAAA+AGG - Chr1:96290867-96290886 None:intergenic 15.0%
!!! TCTTTTCAATTGTAAAATAT+GGG + Chr1:96291157-96291176 MsG0180005801.01.T01:intron 15.0%
!!! TTCTTTTCAATTGTAAAATA+TGG + Chr1:96291156-96291175 MsG0180005801.01.T01:intron 15.0%
!!! TTTTATTTTGGTAAAAATGA+GGG - Chr1:96292093-96292112 None:intergenic 15.0%
!! AAAGATATGAATTAGAAAGA+AGG - Chr1:96289995-96290014 None:intergenic 20.0%
!! AAGATATGAATTAGAAAGAA+GGG - Chr1:96289994-96290013 None:intergenic 20.0%
!! ATTTAAAAGATATGCATTGT+CGG - Chr1:96294385-96294404 None:intergenic 20.0%
!! CATAGTGTATTAGTATAATA+AGG + Chr1:96290367-96290386 MsG0180005801.01.T01:intron 20.0%
!! GATAGTAGAAGAATAAATAA+AGG - Chr1:96293265-96293284 None:intergenic 20.0%
!! GCAAAGAAAATAGTATATAA+AGG - Chr1:96295527-96295546 None:intergenic 20.0%
!! GTATATATCACTAATTATTG+AGG + Chr1:96295563-96295582 MsG0180005801.01.T01:three_prime_UTR 20.0%
!! TTAAAAATTCACTTTGTATG+CGG + Chr1:96290767-96290786 MsG0180005801.01.T01:intron 20.0%
!!! AAATTCATTTTGCAATTTTG+TGG - Chr1:96291233-96291252 None:intergenic 20.0%
!!! AATATTTGTACAACCATTTT+GGG + Chr1:96291337-96291356 MsG0180005801.01.T01:intron 20.0%
!!! ACAAGTTCTAAATGTATTAA+GGG + Chr1:96291557-96291576 MsG0180005801.01.T01:intron 20.0%
!!! ACTATATTCTGTCATTTTTT+AGG + Chr1:96290798-96290817 MsG0180005801.01.T01:intron 20.0%
!!! ATTATGAGAAGAGTATTATT+TGG - Chr1:96292934-96292953 None:intergenic 20.0%
!!! CTATATTCTGTCATTTTTTA+GGG + Chr1:96290799-96290818 MsG0180005801.01.T01:intron 20.0%
!!! CTCATTTTAATCTATAACTT+AGG + Chr1:96293641-96293660 MsG0180005801.01.T01:intron 20.0%
!!! GTTTTATTTTGGTAAAAATG+AGG - Chr1:96292094-96292113 None:intergenic 20.0%
!!! TAATATTTGTACAACCATTT+TGG + Chr1:96291336-96291355 MsG0180005801.01.T01:intron 20.0%
!!! TACAAGTTCTAAATGTATTA+AGG + Chr1:96291556-96291575 MsG0180005801.01.T01:intron 20.0%
!!! TATATTCTGTCATTTTTTAG+GGG + Chr1:96290800-96290819 MsG0180005801.01.T01:intron 20.0%
!!! TATATTTTTGAGTTTTGACA+CGG + Chr1:96291643-96291662 MsG0180005801.01.T01:intron 20.0%
!!! TCAATTTAGAATCATTTATG+AGG - Chr1:96290542-96290561 None:intergenic 20.0%
!!! TGAGAAATTTTGATCAATTA+GGG - Chr1:96293331-96293350 None:intergenic 20.0%
!!! TTGAGAAATTTTGATCAATT+AGG - Chr1:96293332-96293351 None:intergenic 20.0%
!!! TTTATTTTGGTAAAAATGAG+GGG - Chr1:96292092-96292111 None:intergenic 20.0%
!!! TTTTTAGCTGTATATTGATA+AGG + Chr1:96291945-96291964 MsG0180005801.01.T01:intron 20.0%
! AACTCAAAGTTATTTGTAGT+TGG + Chr1:96292230-96292249 MsG0180005801.01.T01:intron 25.0%
! AAGAAACCAATTAAAGATGA+TGG - Chr1:96293881-96293900 None:intergenic 25.0%
! AAGATGCAGTTATTAAAATG+GGG + Chr1:96294308-96294327 MsG0180005801.01.T01:intron 25.0%
! ACATTATCAAACATGATCAA+AGG - Chr1:96294044-96294063 None:intergenic 25.0%
! ACGATATAGAATAAACAAAC+TGG - Chr1:96294204-96294223 None:intergenic 25.0%
! ACTCAAAGTTATTTGTAGTT+GGG + Chr1:96292231-96292250 MsG0180005801.01.T01:intron 25.0%
! ATATGATCCAAGTATGAAAT+TGG - Chr1:96292428-96292447 None:intergenic 25.0%
! ATATGTAACTCTTGTATCTA+CGG + Chr1:96293355-96293374 MsG0180005801.01.T01:intron 25.0%
! ATCAACATATGCAAAAGAAA+AGG - Chr1:96292653-96292672 None:intergenic 25.0%
! ATCCTTACAAATATGTCTTT+AGG + Chr1:96294403-96294422 MsG0180005801.01.T01:intron 25.0%
! ATCTTTATCAGAGAAGAATA+AGG + Chr1:96291059-96291078 MsG0180005801.01.T01:CDS 25.0%
! ATGTTATAGAACTCATTGAA+TGG + Chr1:96291104-96291123 MsG0180005801.01.T01:intron 25.0%
! ATTACATTCATCTTAATGGA+AGG - Chr1:96295246-96295265 None:intergenic 25.0%
! ATTAGAAAGAAGGGAAATAT+TGG - Chr1:96289985-96290004 None:intergenic 25.0%
! CAAATAAGAAATGCTTCATT+CGG + Chr1:96291875-96291894 MsG0180005801.01.T01:intron 25.0%
! CAAGATGCAGTTATTAAAAT+GGG + Chr1:96294307-96294326 MsG0180005801.01.T01:intron 25.0%
! CAGTGTAAAACTAATTACTA+AGG - Chr1:96294241-96294260 None:intergenic 25.0%
! CTTAAAAATCTGATAGAGTA+TGG + Chr1:96294952-96294971 MsG0180005801.01.T01:CDS 25.0%
! GGGTTTAACAATAAATTCAA+TGG - Chr1:96290603-96290622 None:intergenic 25.0%
! GTTATAGATTAAAATGAGAG+AGG - Chr1:96293639-96293658 None:intergenic 25.0%
! TAAATAAAGGTCAGATACTA+TGG - Chr1:96293252-96293271 None:intergenic 25.0%
! TAGATTCATTAAACATACAG+TGG + Chr1:96295277-96295296 MsG0180005801.01.T01:three_prime_UTR 25.0%
! TCAAGATGCAGTTATTAAAA+TGG + Chr1:96294306-96294325 MsG0180005801.01.T01:intron 25.0%
! TGGATATATTCATGTAAACA+GGG - Chr1:96290623-96290642 None:intergenic 25.0%
! TGTAAAACTAATTACTAAGG+TGG - Chr1:96294238-96294257 None:intergenic 25.0%
! TTACTTTCAGATTGAAACAA+AGG + Chr1:96290053-96290072 MsG0180005801.01.T01:intron 25.0%
! TTGAAGTTAAAACCATTGTT+TGG + Chr1:96295391-96295410 MsG0180005801.01.T01:three_prime_UTR 25.0%
! TTGGATATATTCATGTAAAC+AGG - Chr1:96290624-96290643 None:intergenic 25.0%
! TTTCCTATAATGTCATTACT+AGG + Chr1:96294447-96294466 MsG0180005801.01.T01:intron 25.0%
!!! AAACATTTTTTTCTCTCTCT+TGG - Chr1:96293390-96293409 None:intergenic 25.0%
!!! AACAATTTTATTTAGGACAC+TGG + Chr1:96293497-96293516 MsG0180005801.01.T01:intron 25.0%
!!! AACCTTTTTTTCTCTTCTTT+TGG - Chr1:96291482-96291501 None:intergenic 25.0%
!!! ACCTTTTTTTCTCTTCTTTT+GGG - Chr1:96291481-96291500 None:intergenic 25.0%
!!! AGAAATTTTGATCAATTAGG+GGG - Chr1:96293329-96293348 None:intergenic 25.0%
!!! CATACTCATCAGTTTTATTT+TGG - Chr1:96292105-96292124 None:intergenic 25.0%
!!! GAATCTATTTTTCCAAACAA+TGG - Chr1:96295406-96295425 None:intergenic 25.0%
!!! GAGAAATTTTGATCAATTAG+GGG - Chr1:96293330-96293349 None:intergenic 25.0%
!!! TGTTTCTAAAATGTAAGCTA+TGG - Chr1:96292315-96292334 None:intergenic 25.0%
!!! TTTCTGTTTTTCTTGCTAAT+TGG + Chr1:96290012-96290031 MsG0180005801.01.T01:intron 25.0%
!!! TTTTACTGTGTTATTTGCTT+TGG + Chr1:96294786-96294805 MsG0180005801.01.T01:intron 25.0%
AAAACAATAGAGAGAGAAAG+AGG - Chr1:96291455-96291474 None:intergenic 30.0%
AAACAATAGAGAGAGAAAGA+GGG - Chr1:96291454-96291473 None:intergenic 30.0%
AAACATCTTATCCATCTTAG+GGG + Chr1:96292330-96292349 MsG0180005801.01.T01:intron 30.0%
AAATACACCAGAACAATCAT+TGG + Chr1:96290961-96290980 MsG0180005801.01.T01:CDS 30.0%
AAGACAGTAAATACTTCTGT+GGG - Chr1:96295350-96295369 None:intergenic 30.0%
AAGAGAAAAAGAAACTACAG+CGG - Chr1:96294506-96294525 None:intergenic 30.0%
AATACACCAGAACAATCATT+GGG + Chr1:96290962-96290981 MsG0180005801.01.T01:CDS 30.0%
ACATAAGGAAATCAAGAGAT+TGG - Chr1:96292744-96292763 None:intergenic 30.0%
ACCTCATTTCTATTAGCAAA+TGG - Chr1:96291592-96291611 None:intergenic 30.0%
ACTTATGATGATCTCGAAAA+GGG + Chr1:96291839-96291858 MsG0180005801.01.T01:intron 30.0%
ACTTGAAGAAACTGATGATA+GGG - Chr1:96295188-96295207 None:intergenic 30.0%
AGAAACATCTTATCCATCTT+AGG + Chr1:96292328-96292347 MsG0180005801.01.T01:intron 30.0%
AGTAAGTAGTAACCATGAAT+AGG - Chr1:96290197-96290216 None:intergenic 30.0%
AGTAATAACCTTCATATCAG+TGG - Chr1:96295498-96295517 None:intergenic 30.0%
AGTACTTCTTATAAGATCAG+AGG - Chr1:96291822-96291841 None:intergenic 30.0%
AGTGATATATACTCACAGTA+TGG - Chr1:96295555-96295574 None:intergenic 30.0%
ATAGAGTTTAAAAGACAGTC+TGG - Chr1:96294725-96294744 None:intergenic 30.0%
ATATACTCACAGTATGGTAA+TGG - Chr1:96295549-96295568 None:intergenic 30.0%
ATCACCATCAATAATAGGAT+TGG + Chr1:96289760-96289779 MsG0180005801.01.T01:five_prime_UTR 30.0%
ATCAGTTTCTTCAAGTCAAT+GGG + Chr1:96295192-96295211 MsG0180005801.01.T01:CDS 30.0%
ATCATACACAAAATGAAAGC+TGG - Chr1:96294816-96294835 None:intergenic 30.0%
ATGTGAAAAGGATGATTTAC+AGG - Chr1:96292278-96292297 None:intergenic 30.0%
CAAAACTCTGCAAATATTAC+TGG - Chr1:96290728-96290747 None:intergenic 30.0%
CAAAAGAAAAGGAGAAAAAC+AGG - Chr1:96292642-96292661 None:intergenic 30.0%
CAAACCATTGAATGATAAGA+GGG + Chr1:96295426-96295445 MsG0180005801.01.T01:three_prime_UTR 30.0%
CAATGAGTTCTATAACATGA+AGG - Chr1:96291102-96291121 None:intergenic 30.0%
CATCATCAACCAGTAATTAA+TGG - Chr1:96294639-96294658 None:intergenic 30.0%
CATGTTCCATCATCTTTAAT+TGG + Chr1:96293872-96293891 MsG0180005801.01.T01:intron 30.0%
CTCCTAAAGACATATTTGTA+AGG - Chr1:96294408-96294427 None:intergenic 30.0%
CTGATAAAGATTTATGTCCA+TGG - Chr1:96291050-96291069 None:intergenic 30.0%
GAAACATCTTATCCATCTTA+GGG + Chr1:96292329-96292348 MsG0180005801.01.T01:intron 30.0%
GATCAAAGGTAAATTTGTGA+TGG - Chr1:96294030-96294049 None:intergenic 30.0%
GTACCTAGTAATGACATTAT+AGG - Chr1:96294453-96294472 None:intergenic 30.0%
GTGGTTTATCTTGAAAACTA+TGG + Chr1:96295114-96295133 MsG0180005801.01.T01:CDS 30.0%
TAACTGCATCTTGAAATTGA+CGG - Chr1:96294300-96294319 None:intergenic 30.0%
TACTTATGATGATCTCGAAA+AGG + Chr1:96291838-96291857 MsG0180005801.01.T01:intron 30.0%
TAGAACCAAACATACACTAA+AGG - Chr1:96290447-96290466 None:intergenic 30.0%
TAGATTAAAATGAGAGAGGA+AGG - Chr1:96293635-96293654 None:intergenic 30.0%
TAGCAATTGCCATTAATTAC+TGG + Chr1:96294627-96294646 MsG0180005801.01.T01:intron 30.0%
TATGTATGTCTGTGTTTAGA+AGG + Chr1:96292832-96292851 MsG0180005801.01.T01:intron 30.0%
TCAACAACTAAACTTTCATG+TGG + Chr1:96291286-96291305 MsG0180005801.01.T01:intron 30.0%
TCCCAAAAGAAGAGAAAAAA+AGG + Chr1:96291477-96291496 MsG0180005801.01.T01:intron 30.0%
TTCACCAATCCTATTATTGA+TGG - Chr1:96289767-96289786 None:intergenic 30.0%
TTCATCAGCTGAATTTCAAA+AGG + Chr1:96292598-96292617 MsG0180005801.01.T01:CDS 30.0%
TTGAACAGAATGAACAAAGA+AGG + Chr1:96291766-96291785 MsG0180005801.01.T01:intron 30.0%
TTTCAGATTGAAACAAAGGA+TGG + Chr1:96290057-96290076 MsG0180005801.01.T01:intron 30.0%
! AAGGTTTTTGAATCATGCTT+AGG - Chr1:96293616-96293635 None:intergenic 30.0%
! ACTTTTCTATACATAGCCAA+GGG + Chr1:96291203-96291222 MsG0180005801.01.T01:intron 30.0%
! AGCTTTCATTTTGTGTATGA+TGG + Chr1:96294815-96294834 MsG0180005801.01.T01:intron 30.0%
! ATATCTTGCTACTTCAATGT+GGG + Chr1:96290395-96290414 MsG0180005801.01.T01:intron 30.0%
! CAGTAATATTTGCAGAGTTT+TGG + Chr1:96290726-96290745 MsG0180005801.01.T01:intron 30.0%
! CTAAAAGGACATTTGAAGTT+TGG + Chr1:96294755-96294774 MsG0180005801.01.T01:intron 30.0%
! CTATAACTTAGGAATCCTTT+TGG + Chr1:96293652-96293671 MsG0180005801.01.T01:intron 30.0%
! GCTTTAAATTGGACTTTGTA+GGG + Chr1:96294089-96294108 MsG0180005801.01.T01:intron 30.0%
! TACAAATATGTCTTTAGGAG+AGG + Chr1:96294408-96294427 MsG0180005801.01.T01:intron 30.0%
! TACTTTTCTATACATAGCCA+AGG + Chr1:96291202-96291221 MsG0180005801.01.T01:intron 30.0%
! TCAACCTTTTCTACTATATC+CGG - Chr1:96292386-96292405 None:intergenic 30.0%
! TTAACTCATTTTCAGCGATT+GGG + Chr1:96292715-96292734 MsG0180005801.01.T01:intron 30.0%
! TTATGCCATTTGATACAATC+AGG + Chr1:96290919-96290938 MsG0180005801.01.T01:intron 30.0%
! TTTTCCATTCTTAGTACCAA+AGG - Chr1:96292458-96292477 None:intergenic 30.0%
! TTTTCCCTCTTATCATTCAA+TGG - Chr1:96295433-96295452 None:intergenic 30.0%
!! AACTTGTTGAAAACATTCAG+AGG - Chr1:96291671-96291690 None:intergenic 30.0%
!! AGCTATTTTGTGACAACTTT+TGG - Chr1:96291508-96291527 None:intergenic 30.0%
!! AGCTTTAAATTGGACTTTGT+AGG + Chr1:96294088-96294107 MsG0180005801.01.T01:intron 30.0%
!! CAATTAAAGATGATGGAACA+TGG - Chr1:96293874-96293893 None:intergenic 30.0%
!! CTTGCTATTATTCTTGTCAA+TGG + Chr1:96294856-96294875 MsG0180005801.01.T01:intron 30.0%
!! GAATTTGTTATTGACCTGTT+TGG + Chr1:96290502-96290521 MsG0180005801.01.T01:intron 30.0%
!! GAGAAGAGTATTATTTGGAT+TGG - Chr1:96292929-96292948 None:intergenic 30.0%
!! GATATGAAGCAGCTTTAAAT+TGG + Chr1:96294078-96294097 MsG0180005801.01.T01:intron 30.0%
!! GCTATTTTGTGACAACTTTT+GGG - Chr1:96291507-96291526 None:intergenic 30.0%
!! TTGATGATGAATCAGCATAT+GGG + Chr1:96294650-96294669 MsG0180005801.01.T01:intron 30.0%
!! TTGGTTTGCTACTAATTGAT+TGG + Chr1:96295368-96295387 MsG0180005801.01.T01:three_prime_UTR 30.0%
!! TTTTCAGCACTAGTTTGAAA+AGG + Chr1:96291743-96291762 MsG0180005801.01.T01:intron 30.0%
!!! TGTATGTTTGGTTCTACTTT+TGG + Chr1:96290451-96290470 MsG0180005801.01.T01:intron 30.0%
AACAATAGAGAGAGAAAGAG+GGG - Chr1:96291453-96291472 None:intergenic 35.0%
AAGCTTTCCATAATCGTACT+TGG - Chr1:96294935-96294954 None:intergenic 35.0%
AATACCACATATTCAGAGCA+AGG - Chr1:96289939-96289958 None:intergenic 35.0%
AATGCTGGTAGAATGTGAAA+AGG - Chr1:96292290-96292309 None:intergenic 35.0%
ACAAAGGATGGTTTCTTGTT+AGG + Chr1:96290069-96290088 MsG0180005801.01.T01:five_prime_UTR 35.0%
ACAGTCTGGTGGAAATAATT+AGG - Chr1:96294711-96294730 None:intergenic 35.0%
ACTTAGACGAGTATCACATA+AGG - Chr1:96292759-96292778 None:intergenic 35.0%
AGCTTCCTTTAGTGTATGTT+TGG + Chr1:96290439-96290458 MsG0180005801.01.T01:intron 35.0%
ATACCACATATTCAGAGCAA+GGG - Chr1:96289938-96289957 None:intergenic 35.0%
ATCAACAAAGGCAATGATCT+GGG - Chr1:96295015-96295034 None:intergenic 35.0%
ATGTAAGCTATGGAAAATGC+TGG - Chr1:96292305-96292324 None:intergenic 35.0%
ATTGACCTGTTTGGATGTAT+TGG + Chr1:96290511-96290530 MsG0180005801.01.T01:intron 35.0%
ATTGCCATACTCTTATCCTT+CGG + Chr1:96289825-96289844 MsG0180005801.01.T01:five_prime_UTR 35.0%
ATTGGTGAAACAGAATTTGG+GGG + Chr1:96289778-96289797 MsG0180005801.01.T01:five_prime_UTR 35.0%
ATTGTTTGATCTTGAGCAGT+TGG + Chr1:96291910-96291929 MsG0180005801.01.T01:intron 35.0%
CAAAACCAATACATCCAAAC+AGG - Chr1:96290519-96290538 None:intergenic 35.0%
CAAGACAGTAAATACTTCTG+TGG - Chr1:96295351-96295370 None:intergenic 35.0%
CATCAGTTTCTTCAAGTCAA+TGG + Chr1:96295191-96295210 MsG0180005801.01.T01:CDS 35.0%
CCAAACCATTGAATGATAAG+AGG + Chr1:96295425-96295444 MsG0180005801.01.T01:three_prime_UTR 35.0%
CCATCATCACCATCAATAAT+AGG + Chr1:96289755-96289774 MsG0180005801.01.T01:five_prime_UTR 35.0%
CCTCTTATCATTCAATGGTT+TGG - Chr1:96295428-96295447 None:intergenic 35.0%
GAAAAATAGAGACCTCTCAT+TGG - Chr1:96294268-96294287 None:intergenic 35.0%
GAAATAATTGTCCCCTAAGA+TGG - Chr1:96292344-96292363 None:intergenic 35.0%
GAATAAACAAACTGGTACCA+AGG - Chr1:96294196-96294215 None:intergenic 35.0%
GACTTGAAGAAACTGATGAT+AGG - Chr1:96295189-96295208 None:intergenic 35.0%
GATTGGTGAAACAGAATTTG+GGG + Chr1:96289777-96289796 MsG0180005801.01.T01:five_prime_UTR 35.0%
GGGAAGTAATAATGTTCAGT+GGG + Chr1:96294123-96294142 MsG0180005801.01.T01:intron 35.0%
GTTCAGATGATTGCTACAAT+GGG + Chr1:96292573-96292592 MsG0180005801.01.T01:intron 35.0%
TAAATTGGACTTTGTAGGGA+CGG + Chr1:96294093-96294112 MsG0180005801.01.T01:intron 35.0%
TAATATATGTGTAGCGGTGA+TGG - Chr1:96293133-96293152 None:intergenic 35.0%
TCAACCGGATATAGTAGAAA+AGG + Chr1:96292379-96292398 MsG0180005801.01.T01:CDS 35.0%
TCAGTTTCTTCAAGTCAATG+GGG + Chr1:96295193-96295212 MsG0180005801.01.T01:CDS 35.0%
TCTCAAAAGTTGTCCCAAAA+TGG - Chr1:96291353-96291372 None:intergenic 35.0%
TCTGTCTCCAATTTCATACT+TGG + Chr1:96292418-96292437 MsG0180005801.01.T01:CDS 35.0%
TGACTAGAATTCTTCGACAA+TGG - Chr1:96292000-96292019 None:intergenic 35.0%
TGGCATTCATGAAAGACAAA+AGG - Chr1:96292958-96292977 None:intergenic 35.0%
TGTTCAGATGATTGCTACAA+TGG + Chr1:96292572-96292591 MsG0180005801.01.T01:intron 35.0%
TTACAGACACAACATCAAAG+TGG - Chr1:96295310-96295329 None:intergenic 35.0%
TTGAAATTGACGGAATGACA+TGG - Chr1:96294290-96294309 None:intergenic 35.0%
TTTGCTAAGCTGGAAATACA+TGG - Chr1:96292676-96292695 None:intergenic 35.0%
! AAATATGTCTTTAGGAGAGG+AGG + Chr1:96294411-96294430 MsG0180005801.01.T01:intron 35.0%
! AGGATTGGTGAAACAGAATT+TGG + Chr1:96289775-96289794 MsG0180005801.01.T01:five_prime_UTR 35.0%
! CTTAACTCATTTTCAGCGAT+TGG + Chr1:96292714-96292733 MsG0180005801.01.T01:intron 35.0%
! GATATCTTGCTACTTCAATG+TGG + Chr1:96290394-96290413 MsG0180005801.01.T01:intron 35.0%
! GCCATTTGCTAATAGAAATG+AGG + Chr1:96291588-96291607 MsG0180005801.01.T01:intron 35.0%
! GCTGTAGTTTCTTTTTCTCT+TGG + Chr1:96294505-96294524 MsG0180005801.01.T01:intron 35.0%
! GGATTGGTGAAACAGAATTT+GGG + Chr1:96289776-96289795 MsG0180005801.01.T01:five_prime_UTR 35.0%
! TACATAATTGATTCTCGAGG+TGG + Chr1:96290478-96290497 MsG0180005801.01.T01:intron 35.0%
! TCCAGCTTAGCAAATTTTCA+CGG + Chr1:96292682-96292701 MsG0180005801.01.T01:intron 35.0%
! TGACTTTTCTGACTATTCAC+TGG + Chr1:96293919-96293938 MsG0180005801.01.T01:intron 35.0%
! TGTCCTTTTGTAGCACTTTT+GGG + Chr1:96292139-96292158 MsG0180005801.01.T01:intron 35.0%
! TTGTCCTTTTGTAGCACTTT+TGG + Chr1:96292138-96292157 MsG0180005801.01.T01:intron 35.0%
!! AATCCCAAAAGTGCTACAAA+AGG - Chr1:96292145-96292164 None:intergenic 35.0%
!! CACAGAAGTATTTACTGTCT+TGG + Chr1:96295349-96295368 MsG0180005801.01.T01:three_prime_UTR 35.0%
!! CCTATTATTGATGGTGATGA+TGG - Chr1:96289758-96289777 None:intergenic 35.0%
!! GAAAAGGTGGTTCAAGTTTT+TGG - Chr1:96293840-96293859 None:intergenic 35.0%
!! GGATCAAGGTTTTGATGTTT+GGG + Chr1:96290996-96291015 MsG0180005801.01.T01:CDS 35.0%
!! GTTGATGATGAATCAGCATA+TGG + Chr1:96294649-96294668 MsG0180005801.01.T01:intron 35.0%
!! GTTTTGGACAGTGTTTGAAT+TGG + Chr1:96290742-96290761 MsG0180005801.01.T01:intron 35.0%
!! TTCAAGTTTTTGGAGGATGA+TGG - Chr1:96293830-96293849 None:intergenic 35.0%
!! TTTTCAAGATAAACCACCTC+AGG - Chr1:96295111-96295130 None:intergenic 35.0%
!!! ATGTTTGGTTCTACTTTTGG+AGG + Chr1:96290454-96290473 MsG0180005801.01.T01:intron 35.0%
!!! TGTTTGGTTCTACTTTTGGA+GGG + Chr1:96290455-96290474 MsG0180005801.01.T01:intron 35.0%
!!! TTTTGTAGCACTTTTGGGAT+TGG + Chr1:96292144-96292163 MsG0180005801.01.T01:intron 35.0%
AAACAGGACAGAACGAAAAC+TGG - Chr1:96292626-96292645 None:intergenic 40.0%
AAATTGGACTTTGTAGGGAC+GGG + Chr1:96294094-96294113 MsG0180005801.01.T01:intron 40.0%
ACCTGCCTGATTGTATCAAA+TGG - Chr1:96290927-96290946 None:intergenic 40.0%
ACCTTCTCCAAGTACGATTA+TGG + Chr1:96294925-96294944 MsG0180005801.01.T01:CDS 40.0%
AGACACAACATCAAAGTGGA+CGG - Chr1:96295306-96295325 None:intergenic 40.0%
AGCCAGCAAAGTAATTGCAA+TGG - Chr1:96292978-96292997 None:intergenic 40.0%
ATACACGCAGAATGACCAAA+AGG - Chr1:96293670-96293689 None:intergenic 40.0%
ATGAAGCACATACACACACA+TGG - Chr1:96290350-96290369 None:intergenic 40.0%
ATGAAGCCCAATGATTGTTC+TGG - Chr1:96290971-96290990 None:intergenic 40.0%
ATGAGTTCATCACAGAGAGT+TGG - Chr1:96289900-96289919 None:intergenic 40.0%
ATGATGAATCAGCATATGGG+TGG + Chr1:96294653-96294672 MsG0180005801.01.T01:intron 40.0%
ATGGAACATGGAACATACTC+TGG - Chr1:96293862-96293881 None:intergenic 40.0%
ATGGCTCGTATGAGTGTTAT+AGG + Chr1:96293435-96293454 MsG0180005801.01.T01:intron 40.0%
ATTTGTAGTTGGGCATTCAC+AGG + Chr1:96292241-96292260 MsG0180005801.01.T01:intron 40.0%
CAGATCATTGCCTTTGTTGA+TGG + Chr1:96295014-96295033 MsG0180005801.01.T01:CDS 40.0%
CAGTGAAGATGTAGAAAGGA+TGG + Chr1:96295466-96295485 MsG0180005801.01.T01:three_prime_UTR 40.0%
CATCAACAAAGGCAATGATC+TGG - Chr1:96295016-96295035 None:intergenic 40.0%
CGTATGAGTGTTATAGGTGT+CGG + Chr1:96293441-96293460 MsG0180005801.01.T01:intron 40.0%
CTCTCAGTGAAGATGTAGAA+AGG + Chr1:96295462-96295481 MsG0180005801.01.T01:three_prime_UTR 40.0%
CTTAGGCAAGTTATGAAGCA+CGG - Chr1:96293599-96293618 None:intergenic 40.0%
CTTCGTACAAATATGCTCCT+TGG - Chr1:96294594-96294613 None:intergenic 40.0%
GAGTTTAAAAGACAGTCTGG+TGG - Chr1:96294722-96294741 None:intergenic 40.0%
GCTCAAAAACAACAACAACG+AGG + Chr1:96290147-96290166 MsG0180005801.01.T01:five_prime_UTR 40.0%
GGAAAAGATGCACATTGATC+AGG + Chr1:96292472-96292491 MsG0180005801.01.T01:CDS 40.0%
GGATCATATTAGTGCACCTT+TGG + Chr1:96292439-96292458 MsG0180005801.01.T01:CDS 40.0%
GGGGAAGTAATAATGTTCAG+TGG + Chr1:96294122-96294141 MsG0180005801.01.T01:intron 40.0%
GTTTCCGAAGGATAAGAGTA+TGG - Chr1:96289832-96289851 None:intergenic 40.0%
TACTATATCCGGTTGAGTGA+AGG - Chr1:96292375-96292394 None:intergenic 40.0%
TAGTAACCATGAATAGGCCA+TGG - Chr1:96290191-96290210 None:intergenic 40.0%
TCCATAATCGTACTTGGAGA+AGG - Chr1:96294929-96294948 None:intergenic 40.0%
TCTCTTCTACATGACAACCT+TGG + Chr1:96294176-96294195 MsG0180005801.01.T01:intron 40.0%
TGAAACAGAATTTGGGGGAT+GGG + Chr1:96289783-96289802 MsG0180005801.01.T01:five_prime_UTR 40.0%
TGACATGCTTTATCTTGCCA+AGG + Chr1:96294574-96294593 MsG0180005801.01.T01:intron 40.0%
TGAGAGACATGAACCTGTAA+TGG - Chr1:96292801-96292820 None:intergenic 40.0%
TGCACCTTTGGTACTAAGAA+TGG + Chr1:96292451-96292470 MsG0180005801.01.T01:CDS 40.0%
TGCCATTGCAATTACTTTGC+TGG + Chr1:96292973-96292992 MsG0180005801.01.T01:intron 40.0%
TTACACTGACATCCAATGAG+AGG + Chr1:96294253-96294272 MsG0180005801.01.T01:intron 40.0%
TTTGTCTGAGTTGTCTGACA+TGG + Chr1:96293416-96293435 MsG0180005801.01.T01:intron 40.0%
! ACAGAGAGTTGGTTGTTGTT+TGG - Chr1:96289889-96289908 None:intergenic 40.0%
! ACGTCTTCTATCAGAAGTGT+CGG - Chr1:96290276-96290295 None:intergenic 40.0%
! ATACGATGTGACTTGTGCTT+TGG + Chr1:96292066-96292085 MsG0180005801.01.T01:intron 40.0%
! ATGCGGCTAAGGTCAAATTT+TGG - Chr1:96294991-96295010 None:intergenic 40.0%
! CAGCTTAGCAAATTTTCACG+GGG + Chr1:96292684-96292703 MsG0180005801.01.T01:intron 40.0%
! CATGGAACATACTCTGGAAA+AGG - Chr1:96293856-96293875 None:intergenic 40.0%
! CCAGCTTAGCAAATTTTCAC+GGG + Chr1:96292683-96292702 MsG0180005801.01.T01:intron 40.0%
! GGGTACATAATTGATTCTCG+AGG + Chr1:96290475-96290494 MsG0180005801.01.T01:intron 40.0%
! TTACCCTTGCTCTGAATATG+TGG + Chr1:96289932-96289951 MsG0180005801.01.T01:five_prime_UTR 40.0%
!! AAGGTGGTTCAAGTTTTTGG+AGG - Chr1:96293837-96293856 None:intergenic 40.0%
!! AGAGAGTTGGTTGTTGTTTG+GGG - Chr1:96289887-96289906 None:intergenic 40.0%
!! CAAGGTTTTGATGTTTGGGT+AGG + Chr1:96291000-96291019 MsG0180005801.01.T01:CDS 40.0%
!! CAGAGAGTTGGTTGTTGTTT+GGG - Chr1:96289888-96289907 None:intergenic 40.0%
!! CGGATCAAGGTTTTGATGTT+TGG + Chr1:96290995-96291014 MsG0180005801.01.T01:CDS 40.0%
!! TGCCTTTGTTGATGGCTTAT+GGG + Chr1:96295022-96295041 MsG0180005801.01.T01:CDS 40.0%
!! TTGCCTTTGTTGATGGCTTA+TGG + Chr1:96295021-96295040 MsG0180005801.01.T01:CDS 40.0%
!!! CTGTCATTTTTTAGGGGAAG+TGG + Chr1:96290806-96290825 MsG0180005801.01.T01:intron 40.0%
!!! TTTTTGGAGGATGATGGATG+AGG - Chr1:96293824-96293843 None:intergenic 40.0%
AAGATAAACCACCTCAGGTG+TGG - Chr1:96295106-96295125 None:intergenic 45.0%
AAGGCAATGATCTGGGTATG+CGG - Chr1:96295008-96295027 None:intergenic 45.0%
AATCAGCATATGGGTGGAAG+TGG + Chr1:96294659-96294678 MsG0180005801.01.T01:intron 45.0%
AATCATTGGGCTTCATCCTG+CGG + Chr1:96290975-96290994 MsG0180005801.01.T01:CDS 45.0%
AATTGGACTTTGTAGGGACG+GGG + Chr1:96294095-96294114 MsG0180005801.01.T01:intron 45.0%
ACATCAAAACCTTGATCCGC+AGG - Chr1:96290994-96291013 None:intergenic 45.0%
ATTAGCCCTGTACGATCTTG+CGG + Chr1:96292178-96292197 MsG0180005801.01.T01:intron 45.0%
CATTTCCGCAAGATCGTACA+GGG - Chr1:96292186-96292205 None:intergenic 45.0%
CGCACAATTCAGATCAGAGA+GGG - Chr1:96293075-96293094 None:intergenic 45.0%
CTCGAAAAGGGAGAACAGAA+TGG + Chr1:96291851-96291870 MsG0180005801.01.T01:intron 45.0%
CTTCTGATAGAAGACGTGTC+TGG + Chr1:96290279-96290298 MsG0180005801.01.T01:intron 45.0%
GAAACAGAATTTGGGGGATG+GGG + Chr1:96289784-96289803 MsG0180005801.01.T01:five_prime_UTR 45.0%
GACATGCTGTCATCCATTAC+AGG + Chr1:96292785-96292804 MsG0180005801.01.T01:CDS 45.0%
GCCATTTGATACAATCAGGC+AGG + Chr1:96290923-96290942 MsG0180005801.01.T01:intron 45.0%
GGATCACTGGAGAACATATG+AGG - Chr1:96294897-96294916 None:intergenic 45.0%
GTGAAACAGAATTTGGGGGA+TGG + Chr1:96289782-96289801 MsG0180005801.01.T01:five_prime_UTR 45.0%
TCATTTCCGCAAGATCGTAC+AGG - Chr1:96292187-96292206 None:intergenic 45.0%
TGATTTCCAGCACACACTCA+AGG + Chr1:96295071-96295090 MsG0180005801.01.T01:CDS 45.0%
TTACTTCGACACTCCTAGAC+CGG - Chr1:96293470-96293489 None:intergenic 45.0%
! CGGCTAAGGTCAAATTTTGG+TGG - Chr1:96294988-96295007 None:intergenic 45.0%
! GCAATTTTGTGGAACACCCT+TGG - Chr1:96291222-96291241 None:intergenic 45.0%
! GGAACATACTCTGGAAAAGG+TGG - Chr1:96293853-96293872 None:intergenic 45.0%
! TTTTGCTGCCTTCACTCAAC+CGG + Chr1:96292364-96292383 MsG0180005801.01.T01:CDS 45.0%
!! ACTTGGAGAAGGTACCTTTG+CGG - Chr1:96294918-96294937 None:intergenic 45.0%
!! AGAGTTGGTTGTTGTTTGGG+GGG - Chr1:96289885-96289904 None:intergenic 45.0%
!! CCCGTGAAAATTTGCTAAGC+TGG - Chr1:96292686-96292705 None:intergenic 45.0%
!! CCTTTGTTGATGGCTTATGG+GGG + Chr1:96295024-96295043 MsG0180005801.01.T01:CDS 45.0%
!! GAGAGTTGGTTGTTGTTTGG+GGG - Chr1:96289886-96289905 None:intergenic 45.0%
!! GCCTTTGTTGATGGCTTATG+GGG + Chr1:96295023-96295042 MsG0180005801.01.T01:CDS 45.0%
!! GCGCTGTTTTCAATTAGCAG+TGG + Chr1:96293941-96293960 MsG0180005801.01.T01:intron 45.0%
!! TATATTAATTTATTTATAGA+CGG + Chr1:96293146-96293165 MsG0180005801.01.T01:intron 5.0%
AACATCGCTCACTCCTTCGA+CGG + Chr1:96289849-96289868 MsG0180005801.01.T01:five_prime_UTR 50.0%
ACAACAACAACGAGGTCCTC+CGG + Chr1:96290155-96290174 MsG0180005801.01.T01:five_prime_UTR 50.0%
ACAATCAGGCAGGTGATGCA+TGG + Chr1:96290933-96290952 MsG0180005801.01.T01:intron 50.0%
ACGTGTCGTACGAGTGTCAT+GGG + Chr1:96293535-96293554 MsG0180005801.01.T01:intron 50.0%
ATGATCTGGGTATGCGGCTA+AGG - Chr1:96295002-96295021 None:intergenic 50.0%
ATTGGACTTTGTAGGGACGG+GGG + Chr1:96294096-96294115 MsG0180005801.01.T01:intron 50.0%
CCCCCATAAGCCATCAACAA+AGG - Chr1:96295027-96295046 None:intergenic 50.0%
GAAATGTGCGTGGAACACGT+TGG + Chr1:96291022-96291041 MsG0180005801.01.T01:CDS 50.0%
GATGAACTCATTCTTCCCGC+TGG + Chr1:96289909-96289928 MsG0180005801.01.T01:five_prime_UTR 50.0%
GCGCACAATTCAGATCAGAG+AGG - Chr1:96293076-96293095 None:intergenic 50.0%
GCTTCTCCATGGCCTATTCA+TGG + Chr1:96290182-96290201 MsG0180005801.01.T01:five_prime_UTR 50.0%
GGAGTGCACCACTGATATGA+AGG + Chr1:96295487-96295506 MsG0180005801.01.T01:three_prime_UTR 50.0%
GTTTGGGTAGGAAATGTGCG+TGG + Chr1:96291012-96291031 MsG0180005801.01.T01:CDS 50.0%
TAAACCACCTCAGGTGTGGA+TGG - Chr1:96295102-96295121 None:intergenic 50.0%
TATGAAGCACGGACACCTCT+AGG - Chr1:96293588-96293607 None:intergenic 50.0%
TCAGATCAGAGAGGGTGAGT+AGG - Chr1:96293067-96293086 None:intergenic 50.0%
TGTTCTCCAGTGATCCGCAA+AGG + Chr1:96294901-96294920 MsG0180005801.01.T01:intron 50.0%
TTCAGAGCAAGGGTAACCAG+CGG - Chr1:96289928-96289947 None:intergenic 50.0%
! AAGGTACCTTTGCGGATCAC+TGG - Chr1:96294910-96294929 None:intergenic 50.0%
!! GTGTTATAGGTGTCGGACAC+CGG + Chr1:96293448-96293467 MsG0180005801.01.T01:intron 50.0%
!!! AGCACTTTTGGGATTGGAGC+TGG + Chr1:96292150-96292169 MsG0180005801.01.T01:intron 50.0%
ACTTTGTAGGGACGGGGGTT+GGG + Chr1:96294101-96294120 MsG0180005801.01.T01:intron 55.0%
AGGCCATGGAGAAGCAGAAC+CGG - Chr1:96290177-96290196 None:intergenic 55.0%
CACGTGTCGTACGAGTGTCA+TGG + Chr1:96293534-96293553 MsG0180005801.01.T01:intron 55.0%
GACACTCGTACGACACGTGT+CGG - Chr1:96293533-96293552 None:intergenic 55.0%
GCAGTTCCTTGAGTGTGTGC+TGG - Chr1:96295080-96295099 None:intergenic 55.0%
GGAGTGAGCGATGTTTCCGA+AGG - Chr1:96289844-96289863 None:intergenic 55.0%
TCAGAGCAAGGGTAACCAGC+GGG - Chr1:96289927-96289946 None:intergenic 55.0%
TTGCTTCAACGAGTCACGCG+TGG + Chr1:96293778-96293797 MsG0180005801.01.T01:intron 55.0%
! TACGAGTGTCATGGGAGTGC+CGG + Chr1:96293543-96293562 MsG0180005801.01.T01:intron 55.0%
!! TTTGGGGGATGGGGAGTGTT+TGG + Chr1:96289793-96289812 MsG0180005801.01.T01:five_prime_UTR 55.0%
ACTGCCATCCACACCTGAGG+TGG + Chr1:96295095-96295114 MsG0180005801.01.T01:CDS 60.0%
ATCGCTCACTCCTTCGACGG+CGG + Chr1:96289852-96289871 MsG0180005801.01.T01:five_prime_UTR 60.0%
CCATGGAGAAGCAGAACCGG+AGG - Chr1:96290174-96290193 None:intergenic 60.0%
CCTCCGGTTCTGCTTCTCCA+TGG + Chr1:96290171-96290190 MsG0180005801.01.T01:five_prime_UTR 60.0%
CGTGGAACACGTTGGAGCCA+TGG + Chr1:96291030-96291049 MsG0180005801.01.T01:CDS 60.0%
CTTTGTAGGGACGGGGGTTG+GGG + Chr1:96294102-96294121 MsG0180005801.01.T01:intron 60.0%
GACTTTGTAGGGACGGGGGT+TGG + Chr1:96294100-96294119 MsG0180005801.01.T01:intron 60.0%
GGAACTGCCATCCACACCTG+AGG + Chr1:96295092-96295111 MsG0180005801.01.T01:CDS 60.0%
GGGCTTCATCCTGCGGATCA+AGG + Chr1:96290982-96291001 MsG0180005801.01.T01:CDS 60.0%
TTTGTAGGGACGGGGGTTGG+GGG + Chr1:96294103-96294122 MsG0180005801.01.T01:intron 60.0%
!! CTCTAGGACTAGGCGTGTCG+CGG - Chr1:96293572-96293591 None:intergenic 60.0%
!! GCACGGACACCTCTAGGACT+AGG - Chr1:96293582-96293601 None:intergenic 60.0%
!! TAGGTGTCGGACACCGGTCT+AGG + Chr1:96293454-96293473 MsG0180005801.01.T01:intron 60.0%
ACTAGGCGTGTCGCGGTGTC+CGG - Chr1:96293565-96293584 None:intergenic 65.0%
CGCGACACGCCTAGTCCTAG+AGG + Chr1:96293570-96293589 MsG0180005801.01.T01:intron 65.0%
! GGGTGCGCTGCCGCCGTCGA+AGG - Chr1:96289865-96289884 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr1 gene 96289754 96295593 96289754 ID=MsG0180005801.01;Name=MsG0180005801.01
Chr1 mRNA 96289754 96295593 96289754 ID=MsG0180005801.01.T01;Parent=MsG0180005801.01;Name=MsG0180005801.01.T01;_AED=0.42;_eAED=0.42;_QI=352|0.66|1|1|0.66|0.57|7|360|237
Chr1 exon 96289754 96289953 96289754 ID=MsG0180005801.01.T01:exon:50504;Parent=MsG0180005801.01.T01
Chr1 exon 96290063 96290203 96290063 ID=MsG0180005801.01.T01:exon:50505;Parent=MsG0180005801.01.T01
Chr1 exon 96290941 96291080 96290941 ID=MsG0180005801.01.T01:exon:50506;Parent=MsG0180005801.01.T01
Chr1 exon 96292350 96292493 96292350 ID=MsG0180005801.01.T01:exon:50507;Parent=MsG0180005801.01.T01
Chr1 exon 96292579 96292619 96292579 ID=MsG0180005801.01.T01:exon:50508;Parent=MsG0180005801.01.T01
Chr1 exon 96292730 96292806 96292730 ID=MsG0180005801.01.T01:exon:50509;Parent=MsG0180005801.01.T01
Chr1 exon 96294911 96295593 96294911 ID=MsG0180005801.01.T01:exon:50510;Parent=MsG0180005801.01.T01
Chr1 five_prime_UTR 96289754 96289953 96289754 ID=MsG0180005801.01.T01:five_prime_utr;Parent=MsG0180005801.01.T01
Chr1 five_prime_UTR 96290063 96290203 96290063 ID=MsG0180005801.01.T01:five_prime_utr;Parent=MsG0180005801.01.T01
Chr1 five_prime_UTR 96290941 96290951 96290941 ID=MsG0180005801.01.T01:five_prime_utr;Parent=MsG0180005801.01.T01
Chr1 CDS 96290952 96291080 96290952 ID=MsG0180005801.01.T01:cds;Parent=MsG0180005801.01.T01
Chr1 CDS 96292350 96292493 96292350 ID=MsG0180005801.01.T01:cds;Parent=MsG0180005801.01.T01
Chr1 CDS 96292579 96292619 96292579 ID=MsG0180005801.01.T01:cds;Parent=MsG0180005801.01.T01
Chr1 CDS 96292730 96292806 96292730 ID=MsG0180005801.01.T01:cds;Parent=MsG0180005801.01.T01
Chr1 CDS 96294911 96295233 96294911 ID=MsG0180005801.01.T01:cds;Parent=MsG0180005801.01.T01
Chr1 three_prime_UTR 96295234 96295593 96295234 ID=MsG0180005801.01.T01:three_prime_utr;Parent=MsG0180005801.01.T01
Gene Sequence

>MsG0180005801.01.T01

ATGGTTTCTAAATACACCAGAACAATCATTGGGCTTCATCCTGCGGATCAAGGTTTTGATGTTTGGGTAGGAAATGTGCGTGGAACACGTTGGAGCCATGGACATAAATCTTTATCAGAGAAGAATAAGGGGACAATTATTTCTTTTGCTGCCTTCACTCAACCGGATATAGTAGAAAAGGTTGAAGCTGCAGCTCTTCTGTCTCCAATTTCATACTTGGATCATATTAGTGCACCTTTGGTACTAAGAATGGAAAAGATGCACATTGATCAGATGATTGCTACAATGGGTGTTCATCAGCTGAATTTCAAAAGCGATTGGGAAACCAATCTCTTGATTTCCTTATGTGATACTCGTCTAAGTTGCAGTGACATGCTGTCATCCATTACAGTGATCCGCAAAGGTACCTTCTCCAAGTACGATTATGGAAAGCTTAAAAATCTGATAGAGTATGGCAATTTCAAACCACCAAAATTTGACCTTAGCCGCATACCCAGATCATTGCCTTTGTTGATGGCTTATGGGGGAAACGATGCTTTAGCAGATGTAACTGATTTCCAGCACACACTCAAGGAACTGCCATCCACACCTGAGGTGGTTTATCTTGAAAACTATGGTCACATTGACTTCATTTTAAGCTTGCAAGCAAAACAAGATCTTTATGACCCTATCATCAGTTTCTTCAAGTCAATGGGGAAATTTAGTAGTATTTAA
Protein sequence

>MsG0180005801.01.T01

MVSKYTRTIIGLHPADQGFDVWVGNVRGTRWSHGHKSLSEKNKGTIISFAAFTQPDIVEKVEAAALLSPISYLDHISAPLVLRMEKMHIDQMIATMGVHQLNFKSDWETNLLISLCDTRLSCSDMLSSITVIRKGTFSKYDYGKLKNLIEYGNFKPPKFDLSRIPRSLPLLMAYGGNDALADVTDFQHTLKELPSTPEVVYLENYGHIDFILSLQAKQDLYDPIISFFKSMGKFSSI*