AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003906.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003906.01.T01 MTR_1g070520 89.412 255 7 3 3 250 4 245 1.33e-161 447
MsG0180003906.01.T01 MTR_7g096090 64.684 269 57 9 1 250 1 250 6.85e-97 284
MsG0180003906.01.T01 MTR_1g093240 61.811 254 53 9 14 250 10 236 3.79e-89 264
MsG0180003906.01.T01 MTR_1g093240 61.603 237 60 8 14 233 10 232 3.06e-84 251
MsG0180003906.01.T01 MTR_1g080860 59.144 257 65 8 14 250 17 253 3.02e-83 249
MsG0180003906.01.T01 MTR_1g080860 60.944 233 64 7 14 226 17 242 2.52e-78 236
MsG0180003906.01.T01 MTR_1g093240 61.244 209 50 8 14 205 10 204 1.14e-68 211
MsG0180003906.01.T01 MTR_6g488150 50.224 223 78 6 35 250 58 254 2.83e-62 196
MsG0180003906.01.T01 MTR_5g030710 58.242 182 52 5 77 250 170 335 8.91e-61 194
MsG0180003906.01.T01 MTR_8g067530 58.333 180 50 5 79 250 194 356 3.44e-59 191
MsG0180003906.01.T01 MTR_5g067350 58.382 173 51 4 83 250 191 347 4.45e-59 191
MsG0180003906.01.T01 MTR_2g101500 57.955 176 50 5 83 250 167 326 5.88e-58 187
MsG0180003906.01.T01 MTR_8g103030 54.749 179 55 4 81 250 132 293 8.06e-57 183
MsG0180003906.01.T01 MTR_1g070830 44.017 234 91 8 1 226 1 202 9.47e-51 165
MsG0180003906.01.T01 MTR_1g040675 44.843 223 75 8 12 226 1 183 3.54e-50 162
MsG0180003906.01.T01 MTR_1g076270 42.601 223 70 7 9 225 8 178 2.72e-47 155
MsG0180003906.01.T01 MTR_1g093350 42.601 223 70 7 9 225 8 178 2.72e-47 155
MsG0180003906.01.T01 MTR_1g040675 41.584 202 70 8 12 205 1 162 2.50e-37 129
MsG0180003906.01.T01 MTR_4g011880 50.694 144 44 4 86 228 52 169 1.29e-35 125
MsG0180003906.01.T01 MTR_2g102490 39.269 219 88 11 2 217 4 180 8.02e-34 121
MsG0180003906.01.T01 MTR_2g100780 33.840 263 131 8 6 228 4 263 1.33e-29 112
MsG0180003906.01.T01 MTR_2g100780 33.858 254 127 7 6 221 4 254 2.31e-29 111
MsG0180003906.01.T01 MTR_8g014520 32.584 267 135 8 7 228 3 269 9.62e-29 110
MsG0180003906.01.T01 MTR_8g014520 32.558 258 131 7 7 221 3 260 1.94e-28 109
MsG0180003906.01.T01 MTR_1g069495 33.600 250 109 8 21 229 27 260 2.61e-25 100
MsG0180003906.01.T01 MTR_6g488150 36.264 182 83 5 2 163 5 173 1.73e-24 97.1
MsG0180003906.01.T01 MTR_5g067350 60.241 83 31 1 83 165 191 271 1.88e-24 98.6
MsG0180003906.01.T01 MTR_4g124300 36.242 149 67 5 80 222 58 184 2.53e-19 83.2
MsG0180003906.01.T01 MTR_3g106850 29.496 139 84 3 85 222 85 210 4.50e-18 80.5
MsG0180003906.01.T01 MTR_1g085750 41.837 98 48 2 122 218 81 170 9.28e-16 73.2
MsG0180003906.01.T01 MTR_4g115075 30.303 132 75 2 89 220 93 207 1.13e-15 73.6
MsG0180003906.01.T01 MTR_7g110790 33.600 125 69 3 94 218 45 155 2.94e-15 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003906.01.T01 AT4G14550 60.938 256 55 10 12 250 1 228 1.45e-87 259
MsG0180003906.01.T01 AT3G23050 61.176 255 50 11 21 250 13 243 1.65e-86 257
MsG0180003906.01.T01 AT3G04730 57.529 259 62 9 14 250 4 236 1.49e-84 252
MsG0180003906.01.T01 AT4G14550 61.667 240 59 10 12 234 1 224 2.05e-84 251
MsG0180003906.01.T01 AT1G04250 58.566 251 54 10 18 250 11 229 3.00e-83 248
MsG0180003906.01.T01 AT4G14550 60.952 210 50 9 12 204 1 195 9.97e-69 210
MsG0180003906.01.T01 AT3G23050 61.244 209 46 9 21 205 13 210 1.70e-67 207
MsG0180003906.01.T01 AT4G29080 54.950 202 59 6 63 250 122 305 6.03e-62 197
MsG0180003906.01.T01 AT5G65670 50.427 234 83 7 35 250 120 338 1.04e-59 192
MsG0180003906.01.T01 AT5G65670 50.427 234 81 7 35 250 120 336 2.60e-59 191
MsG0180003906.01.T01 AT2G22670 53.714 175 57 5 83 249 160 318 4.46e-53 174
MsG0180003906.01.T01 AT2G22670 53.714 175 57 5 83 249 160 318 4.46e-53 174
MsG0180003906.01.T01 AT2G22670 53.714 175 57 5 83 249 177 335 6.08e-53 174
MsG0180003906.01.T01 AT2G22670 57.895 152 53 4 83 226 160 308 2.39e-52 172
MsG0180003906.01.T01 AT2G22670 57.895 152 53 4 83 226 160 308 2.39e-52 172
MsG0180003906.01.T01 AT5G43700 61.538 143 37 5 84 226 58 182 2.39e-51 166
MsG0180003906.01.T01 AT1G04240 46.606 221 85 9 9 229 2 189 2.78e-50 163
MsG0180003906.01.T01 AT1G04240 46.606 221 85 9 9 229 102 289 4.11e-49 163
MsG0180003906.01.T01 AT3G23030 42.593 216 52 5 21 225 16 170 2.93e-45 150
MsG0180003906.01.T01 AT4G14550 56.886 167 47 7 12 167 1 153 7.74e-45 149
MsG0180003906.01.T01 AT3G23030 42.593 216 52 5 21 225 103 257 2.23e-44 150
MsG0180003906.01.T01 AT3G23050 56.395 172 45 8 12 165 6 165 3.82e-43 144
MsG0180003906.01.T01 AT3G15540 41.778 225 92 8 8 228 2 191 3.25e-41 140
MsG0180003906.01.T01 AT4G14560 45.933 209 60 7 14 222 9 164 2.02e-39 134
MsG0180003906.01.T01 AT2G33310 43.407 182 85 3 65 228 52 233 6.89e-39 135
MsG0180003906.01.T01 AT2G33310 43.407 182 85 3 65 228 52 233 6.89e-39 135
MsG0180003906.01.T01 AT1G15580 41.262 206 62 6 14 218 10 157 2.61e-38 132
MsG0180003906.01.T01 AT2G33310 43.169 183 85 4 65 228 52 234 1.69e-37 132
MsG0180003906.01.T01 AT1G04550 44.751 181 77 5 65 225 46 223 2.36e-36 129
MsG0180003906.01.T01 AT1G52830 37.281 228 92 8 9 228 3 187 6.72e-35 124
MsG0180003906.01.T01 AT3G16500 35.833 240 127 8 15 234 34 266 3.40e-33 121
MsG0180003906.01.T01 AT4G28640 44.586 157 69 4 87 226 87 242 4.91e-33 120
MsG0180003906.01.T01 AT3G16500 36.726 226 117 7 15 221 34 252 6.12e-33 121
MsG0180003906.01.T01 AT4G28640 44.516 155 68 4 87 224 87 240 9.00e-33 120
MsG0180003906.01.T01 AT4G28640 44.516 155 68 4 87 224 87 240 1.25e-31 118
MsG0180003906.01.T01 AT1G51950 39.873 158 74 4 85 221 93 250 8.08e-29 110
MsG0180003906.01.T01 AT1G04100 40.476 168 67 5 90 226 95 260 1.67e-28 109
MsG0180003906.01.T01 AT5G25890 40.714 140 65 4 87 226 47 168 8.57e-24 94.7
MsG0180003906.01.T01 AT3G17600 33.117 154 78 4 69 218 22 154 5.05e-21 87.0
MsG0180003906.01.T01 AT3G62100 39.806 103 52 2 118 218 74 168 3.36e-18 79.7
MsG0180003906.01.T01 AT2G46990 41.935 93 46 1 126 218 86 170 7.80e-18 79.0
MsG0180003906.01.T01 AT4G32280 26.829 164 78 3 86 220 92 242 3.14e-15 73.6
MsG0180003906.01.T01 AT4G32280 33.684 95 50 1 126 220 119 200 1.30e-14 70.9
MsG0180003906.01.T01 AT2G46990 42.500 80 38 1 126 205 86 157 4.32e-13 65.5
MsG0180003906.01.T01 AT3G62100 38.889 90 45 2 118 205 74 155 5.34e-13 65.5
MsG0180003906.01.T01 AT1G04550 36.441 118 56 3 65 163 46 163 1.11e-12 64.7
MsG0180003906.01.T01 AT1G15050 32.479 117 68 2 108 223 44 150 1.08e-11 61.6
MsG0180003906.01.T01 AT1G15050 30.000 130 76 3 95 223 67 182 2.76e-11 61.2
MsG0180003906.01.T01 AT2G01200 25.926 189 113 6 41 223 21 188 6.91e-11 60.1
MsG0180003906.01.T01 AT2G01200 25.926 189 113 6 41 223 21 188 6.91e-11 60.1

Find 72 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATCCTCCACTGCTCTTT+TGG 0.091227 1:+69943870 None:intergenic
CTAACTTTCACAAAGCTTAT+TGG 0.130204 1:+69943818 None:intergenic
GGTAAAGGAGTTAAACATTT+TGG 0.221116 1:+69943718 None:intergenic
GCTCTTCTGCTCTCTGATTC+TGG 0.233246 1:-69944833 MsG0180003906.01.T01:CDS
GGTAACTCTTGTACATCTTT+AGG 0.262824 1:+69943762 None:intergenic
AAGCTTTGTGAAAGTTAGTA+TGG 0.303935 1:-69943813 MsG0180003906.01.T01:CDS
TTGTGAATCCCAAGGCATTA+AGG 0.313394 1:-69942994 MsG0180003906.01.T01:intron
GGAAAACAACAGAAGTAATA+AGG 0.347716 1:-69944970 MsG0180003906.01.T01:CDS
GGAAGTTGCAGGGCTGAAAA+AGG 0.353058 1:-69945047 MsG0180003906.01.T01:CDS
AGCAGAAGAGCCTTCTCCTT+TGG 0.360991 1:+69944845 None:intergenic
CCATCTTTGTCTTCATAAGT+TGG 0.383939 1:+69942915 None:intergenic
GAAGCTTAATCTTTCTACTA+AGG 0.400977 1:-69944894 MsG0180003906.01.T01:CDS
CATCTTTGTCTTCATAAGTT+GGG 0.414636 1:+69942916 None:intergenic
AGGCTAGGACTTGGATTGCC+AGG 0.417824 1:-69944992 MsG0180003906.01.T01:CDS
TTCTCCTTTGGCTTAAATTG+TGG 0.418936 1:+69944857 None:intergenic
AGCATTCAGTGTGATTTGAT+TGG 0.424793 1:+69945114 None:intergenic
AACTTGATAATGGAAGTTGC+AGG 0.451323 1:-69945058 MsG0180003906.01.T01:exon
GAATGAGAGTAATAAGTTGA+TGG 0.457906 1:-69942964 MsG0180003906.01.T01:CDS
GCTAAGGCATCAGAGAGCTC+TGG 0.465095 1:+69943740 None:intergenic
TGACATTCTAAGCAAAATAA+CGG 0.476790 1:-69942031 MsG0180003906.01.T01:intron
GGAGGAAAAGATGGTGTTTG+AGG 0.477721 1:-69945026 MsG0180003906.01.T01:CDS
AGGTCTACTTTGCGGAGGTA+AGG 0.480055 1:+69943782 None:intergenic
GGGCAGCAAACATGTTCTTA+CGG 0.483487 1:+69943891 None:intergenic
CTTAATCTTTCTACTAAGGA+AGG 0.487124 1:-69944890 MsG0180003906.01.T01:CDS
GGAAAGGAAGCCATTGGACT+CGG 0.495438 1:-69942559 MsG0180003906.01.T01:CDS
TAATGAACAACTTACTTAGC+AGG 0.499421 1:+69944800 None:intergenic
TTTGTGACAATAATAGAGGA+AGG 0.505887 1:+69945137 None:intergenic
ATAGAGGAAGGGGTATAGAA+AGG 0.512057 1:+69945149 None:intergenic
AGGCAAGAGCACGTTGAAGT+GGG 0.512186 1:+69945169 None:intergenic
ACATCTTTAGGTCTACTTTG+CGG 0.517949 1:+69943774 None:intergenic
CTAAGGCATCAGAGAGCTCT+GGG 0.519415 1:+69943741 None:intergenic
ATGAAAGGAAAGGAAGCCAT+TGG 0.526527 1:-69942565 MsG0180003906.01.T01:CDS
TTGGTTTGTGACAATAATAG+AGG 0.530133 1:+69945133 None:intergenic
TTTGTGAAAGTTAGTATGGA+TGG 0.531648 1:-69943809 MsG0180003906.01.T01:CDS
TGTGACAATAATAGAGGAAG+GGG 0.540700 1:+69945139 None:intergenic
ACAATTTAAGCCAAAGGAGA+AGG 0.543283 1:-69944855 MsG0180003906.01.T01:CDS
ACTGAACTGAGGCTAGGACT+TGG 0.544230 1:-69945001 MsG0180003906.01.T01:CDS
ATGTTTAACTCCTTTACCAC+AGG 0.544923 1:-69943713 MsG0180003906.01.T01:intron
ACGTATAGGGCACAAGTGGT+AGG 0.553577 1:-69943935 MsG0180003906.01.T01:intron
CCAACTTATGAAGACAAAGA+TGG 0.567272 1:-69942915 MsG0180003906.01.T01:CDS
CGTATAGGGCACAAGTGGTA+GGG 0.568467 1:-69943934 MsG0180003906.01.T01:intron
AAGGCAAGAGCACGTTGAAG+TGG 0.578771 1:+69945168 None:intergenic
TGCTTGTCGGTGATGTACCA+TGG 0.581796 1:-69942884 MsG0180003906.01.T01:CDS
TATATCAGCACCAAGAGCCA+TGG 0.584136 1:-69941992 MsG0180003906.01.T01:CDS
TTGTGACAATAATAGAGGAA+GGG 0.584516 1:+69945138 None:intergenic
GCAAGAGCACGTTGAAGTGG+GGG 0.588919 1:+69945171 None:intergenic
ATGAAGACAAAGATGGCGAC+TGG 0.589440 1:-69942908 MsG0180003906.01.T01:CDS
TTCATAAGTTGGGACATAGT+CGG 0.596025 1:+69942926 None:intergenic
TTTACGTATCATGAAAGGAA+AGG 0.596184 1:-69942575 MsG0180003906.01.T01:CDS
AGATCCACAATTTAAGCCAA+AGG 0.598269 1:-69944861 MsG0180003906.01.T01:CDS
GGCTAGGACTTGGATTGCCA+GGG 0.598855 1:-69944991 MsG0180003906.01.T01:CDS
AAGCGTTTACGTATCATGAA+AGG 0.600017 1:-69942580 MsG0180003906.01.T01:CDS
GGCAAGAGCACGTTGAAGTG+GGG 0.601053 1:+69945170 None:intergenic
GAATTGAAAACTTACTCCCA+TGG 0.601391 1:+69942867 None:intergenic
GATGGCGACTGGATGCTTGT+CGG 0.601801 1:-69942897 MsG0180003906.01.T01:CDS
TTACGGAATGACCGCACTGG+TGG 0.603134 1:+69943908 None:intergenic
GCTTGTCGGTGATGTACCAT+GGG 0.605812 1:-69942883 MsG0180003906.01.T01:CDS
GAGGAAACTGAACTGAGGCT+AGG 0.606535 1:-69945007 MsG0180003906.01.T01:CDS
TTCTTACGGAATGACCGCAC+TGG 0.606920 1:+69943905 None:intergenic
CTGTACGTATAGGGCACAAG+TGG 0.611935 1:-69943939 MsG0180003906.01.T01:intron
ACAGAAGTAATAAGGAAGAG+AGG 0.613004 1:-69944962 MsG0180003906.01.T01:CDS
GCTGCCCAAAAGAGCAGTGG+AGG 0.620267 1:-69943875 MsG0180003906.01.T01:CDS
TGAACAACTTACTTAGCAGG+AGG 0.624213 1:+69944803 None:intergenic
ACTTGATAATGGAAGTTGCA+GGG 0.628469 1:-69945057 MsG0180003906.01.T01:exon
ATCATACTAACCGAGTCCAA+TGG 0.634399 1:+69942549 None:intergenic
CAAGAGCACGTTGAAGTGGG+GGG 0.644816 1:+69945172 None:intergenic
TCTTTAGGTCTACTTTGCGG+AGG 0.646104 1:+69943777 None:intergenic
TTTGCTGCCCAAAAGAGCAG+TGG 0.650500 1:-69943878 MsG0180003906.01.T01:CDS
TGGTAGGGTGGCCACCAGTG+CGG 0.683033 1:-69943919 MsG0180003906.01.T01:CDS
ATAGGGCACAAGTGGTAGGG+TGG 0.690264 1:-69943931 MsG0180003906.01.T01:intron
TGAAAGTGAAACAAACACTG+TGG 0.729821 1:-69944921 MsG0180003906.01.T01:CDS
TGTTTGAGGAAACTGAACTG+AGG 0.788719 1:-69945012 MsG0180003906.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAAAAATATTTATTTTT+TGG - Chr1:69944401-69944420 MsG0180003906.01.T01:intron 0.0%
!! AAATTAAATTTATTCTTTCA+TGG + Chr1:69944009-69944028 None:intergenic 10.0%
!! AGTAATGAAATAAATAAAAT+AGG + Chr1:69944328-69944347 None:intergenic 10.0%
!! ATATAAATTATTAATCACAA+AGG + Chr1:69942536-69942555 None:intergenic 10.0%
!! GTAATGAAATAAATAAAATA+GGG + Chr1:69944327-69944346 None:intergenic 10.0%
!!! AAATGATATTTTATTCTAAA+GGG + Chr1:69945048-69945067 None:intergenic 10.0%
!!! AAATTTAATTTCATAGAAAT+GGG - Chr1:69944018-69944037 MsG0180003906.01.T01:intron 10.0%
!!! TAAAAATAGTTCTATATTAA+AGG - Chr1:69942923-69942942 MsG0180003906.01.T01:CDS 10.0%
!!! TAAATGATATTTTATTCTAA+AGG + Chr1:69945049-69945068 None:intergenic 10.0%
!!! TAAATTTAATTTCATAGAAA+TGG - Chr1:69944017-69944036 MsG0180003906.01.T01:intron 10.0%
!!! TTTTAATTGTGAATTAAATA+TGG - Chr1:69942863-69942882 MsG0180003906.01.T01:intron 10.0%
!! AAACTATCAACTTTATAATA+AGG - Chr1:69942961-69942980 MsG0180003906.01.T01:CDS 15.0%
!! AAATAAAGTTTGTATTGAAA+TGG - Chr1:69944640-69944659 MsG0180003906.01.T01:intron 15.0%
!! AATTTCATTGCTAAAATAAA+TGG - Chr1:69943055-69943074 MsG0180003906.01.T01:intron 15.0%
!! ATCAAATAAATGAGTTATAT+AGG + Chr1:69944877-69944896 None:intergenic 15.0%
!! ATTACATACAATAAAATTTG+TGG + Chr1:69943923-69943942 None:intergenic 15.0%
!! GATAACAATAGTATATAATA+AGG + Chr1:69942816-69942835 None:intergenic 15.0%
!! TGATGAAATTCAATAAATAA+AGG - Chr1:69943701-69943720 MsG0180003906.01.T01:intron 15.0%
!! TTTATATTGAAATTGATTGA+AGG - Chr1:69944120-69944139 MsG0180003906.01.T01:intron 15.0%
!! TTTGATTCAAACAATTTAAT+TGG - Chr1:69944891-69944910 MsG0180003906.01.T01:CDS 15.0%
!!! AAAATTTGCTATATTGTTAT+GGG + Chr1:69942653-69942672 None:intergenic 15.0%
!!! AATAAATAAAGGTATAATAG+CGG - Chr1:69943712-69943731 MsG0180003906.01.T01:intron 15.0%
!!! TTATGTTCCAATTAATTTTA+TGG + Chr1:69942470-69942489 None:intergenic 15.0%
!! AATCATACAAAAACCTTAAA+CGG + Chr1:69943585-69943604 None:intergenic 20.0%
!! AATTATTAATCACAAAGGAA+TGG + Chr1:69942531-69942550 None:intergenic 20.0%
!! AGATCAATATCAAGTATTAA+TGG - Chr1:69944083-69944102 MsG0180003906.01.T01:intron 20.0%
!! ATTCAAATGTTTAAAAGTTG+TGG + Chr1:69944998-69945017 None:intergenic 20.0%
!! CTCTTAGAAAAAGTTATATA+GGG + Chr1:69944754-69944773 None:intergenic 20.0%
!! GATAAAAAAAAAATTACCTG+TGG + Chr1:69943446-69943465 None:intergenic 20.0%
!! GCAATATTAAGACAAAATTA+AGG + Chr1:69943966-69943985 None:intergenic 20.0%
!! GTACAATAAAAACATATAGT+AGG + Chr1:69942995-69943014 None:intergenic 20.0%
!! TACTTATAGAAAAAAGTAAG+AGG + Chr1:69942720-69942739 None:intergenic 20.0%
!! TCTCTTAGAAAAAGTTATAT+AGG + Chr1:69944755-69944774 None:intergenic 20.0%
!! TTAATAGTATGCTCATATAT+TGG - Chr1:69944675-69944694 MsG0180003906.01.T01:intron 20.0%
!!! AAATTTGCTATATTGTTATG+GGG + Chr1:69942652-69942671 None:intergenic 20.0%
!!! AATTTTGTCTTAATATTGCA+TGG - Chr1:69943967-69943986 MsG0180003906.01.T01:intron 20.0%
!!! ATATTCTAAAATGATGTATG+TGG - Chr1:69943759-69943778 MsG0180003906.01.T01:CDS 20.0%
!!! ATTTTAGTATATGTTAGATG+AGG - Chr1:69943474-69943493 MsG0180003906.01.T01:intron 20.0%
!!! CAAAATTTGCTATATTGTTA+TGG + Chr1:69942654-69942673 None:intergenic 20.0%
!!! TTCCAATTAATTTTATGGAT+CGG + Chr1:69942465-69942484 None:intergenic 20.0%
!!! TTTTAGTATATGTTAGATGA+GGG - Chr1:69943475-69943494 MsG0180003906.01.T01:intron 20.0%
! AAAAAAATTACCTGTGGTAA+AGG + Chr1:69943440-69943459 None:intergenic 25.0%
! AGAGAGAAAAAACTTGATAA+TGG - Chr1:69942072-69942091 MsG0180003906.01.T01:intron 25.0%
! GATTCAAACAATTTAATTGG+CGG - Chr1:69944894-69944913 MsG0180003906.01.T01:CDS 25.0%
! TGACATTCTAAGCAAAATAA+CGG - Chr1:69945109-69945128 MsG0180003906.01.T01:five_prime_UTR 25.0%
! TTACGCATGCTTAAATATTT+AGG + Chr1:69942367-69942386 None:intergenic 25.0%
! TTCCGATCCATAAAATTAAT+TGG - Chr1:69942460-69942479 MsG0180003906.01.T01:intron 25.0%
! TTCGTTAGCTATATATATTG+TGG + Chr1:69944493-69944512 None:intergenic 25.0%
!! ACTTTTGCTTATAATAGTGA+CGG - Chr1:69943831-69943850 MsG0180003906.01.T01:CDS 25.0%
!! GAAAATTCTCAAGTTTTTGA+AGG + Chr1:69943121-69943140 None:intergenic 25.0%
!! TAGTTCTATATTAAAGGACA+AGG - Chr1:69942929-69942948 MsG0180003906.01.T01:CDS 25.0%
!!! AGAAGACATATTATTTTGAG+AGG - Chr1:69943879-69943898 MsG0180003906.01.T01:CDS 25.0%
!!! GAAGACATATTATTTTGAGA+GGG - Chr1:69943880-69943899 MsG0180003906.01.T01:CDS 25.0%
AAAGCAATACAATCATGAAC+TGG - Chr1:69943094-69943113 MsG0180003906.01.T01:intron 30.0%
ACTAATTGAACTGTACGTAT+AGG - Chr1:69943191-69943210 MsG0180003906.01.T01:intron 30.0%
AGTTCATGATTGTATTGCTT+TGG + Chr1:69943095-69943114 None:intergenic 30.0%
ATAGAAAAAAGTAAGAGGCA+AGG + Chr1:69942715-69942734 None:intergenic 30.0%
ATAGTATGCTCATATATTGG+TGG - Chr1:69944678-69944697 MsG0180003906.01.T01:intron 30.0%
CATCTTTGTCTTCATAAGTT+GGG + Chr1:69944227-69944246 None:intergenic 30.0%
CATTCTTCCACTGAATTAAT+TGG - Chr1:69944295-69944314 MsG0180003906.01.T01:intron 30.0%
CTAACTTTCACAAAGCTTAT+TGG + Chr1:69943325-69943344 None:intergenic 30.0%
CTAATTGAACTGTACGTATA+GGG - Chr1:69943192-69943211 MsG0180003906.01.T01:intron 30.0%
CTCAAAATAATAGCCGTTTA+AGG - Chr1:69943569-69943588 MsG0180003906.01.T01:intron 30.0%
CTTAATCTTTCTACTAAGGA+AGG - Chr1:69942250-69942269 MsG0180003906.01.T01:intron 30.0%
GAAGCTTAATCTTTCTACTA+AGG - Chr1:69942246-69942265 MsG0180003906.01.T01:intron 30.0%
GGAAAACAACAGAAGTAATA+AGG - Chr1:69942170-69942189 MsG0180003906.01.T01:intron 30.0%
TAATGAACAACTTACTTAGC+AGG + Chr1:69942343-69942362 None:intergenic 30.0%
TAGTATGCTCATATATTGGT+GGG - Chr1:69944679-69944698 MsG0180003906.01.T01:intron 30.0%
TCGCTGATAACATAGAATTA+GGG - Chr1:69944944-69944963 MsG0180003906.01.T01:CDS 30.0%
TTGTGACAATAATAGAGGAA+GGG + Chr1:69942005-69942024 None:intergenic 30.0%
TTTACGTATCATGAAAGGAA+AGG - Chr1:69944565-69944584 MsG0180003906.01.T01:intron 30.0%
TTTGTGAAAGTTAGTATGGA+TGG - Chr1:69943331-69943350 MsG0180003906.01.T01:intron 30.0%
TTTGTGACAATAATAGAGGA+AGG + Chr1:69942006-69942025 None:intergenic 30.0%
! AAGCTTTGTGAAAGTTAGTA+TGG - Chr1:69943327-69943346 MsG0180003906.01.T01:intron 30.0%
! CTTTTGCTTATAATAGTGAC+GGG - Chr1:69943832-69943851 MsG0180003906.01.T01:CDS 30.0%
! GAATGAGAGTAATAAGTTGA+TGG - Chr1:69944176-69944195 MsG0180003906.01.T01:intron 30.0%
! GGTAAAGGAGTTAAACATTT+TGG + Chr1:69943425-69943444 None:intergenic 30.0%
!! ATATAGGGATCTCTTTGTTT+TGG + Chr1:69944739-69944758 None:intergenic 30.0%
!! TTGGTTTGTGACAATAATAG+AGG + Chr1:69942010-69942029 None:intergenic 30.0%
!! TTTATTTTCTTTGTGTCGAC+AGG - Chr1:69944519-69944538 MsG0180003906.01.T01:intron 30.0%
!!! TCTTTGTTTTGGTGATTAAG+TGG + Chr1:69944728-69944747 None:intergenic 30.0%
AAGCGTTTACGTATCATGAA+AGG - Chr1:69944560-69944579 MsG0180003906.01.T01:intron 35.0%
ACAATTTAAGCCAAAGGAGA+AGG - Chr1:69942285-69942304 MsG0180003906.01.T01:intron 35.0%
ACAGAAGTAATAAGGAAGAG+AGG - Chr1:69942178-69942197 MsG0180003906.01.T01:intron 35.0%
ACATCTTTAGGTCTACTTTG+CGG + Chr1:69943369-69943388 None:intergenic 35.0%
AGATCCACAATTTAAGCCAA+AGG - Chr1:69942279-69942298 MsG0180003906.01.T01:intron 35.0%
AGCATTCAGTGTGATTTGAT+TGG + Chr1:69942029-69942048 None:intergenic 35.0%
AGCTATATATATTGTGGTCG+TGG + Chr1:69944487-69944506 None:intergenic 35.0%
AGTATGCTCATATATTGGTG+GGG - Chr1:69944680-69944699 MsG0180003906.01.T01:intron 35.0%
AGTGAATGAGCGAAATGATA+AGG + Chr1:69943517-69943536 None:intergenic 35.0%
ATGTTTAACTCCTTTACCAC+AGG - Chr1:69943427-69943446 MsG0180003906.01.T01:intron 35.0%
CATGAAATCCTTAATGCCTT+GGG + Chr1:69944157-69944176 None:intergenic 35.0%
CCAACTTATGAAGACAAAGA+TGG - Chr1:69944225-69944244 MsG0180003906.01.T01:intron 35.0%
CCATCTTTGTCTTCATAAGT+TGG + Chr1:69944228-69944247 None:intergenic 35.0%
CGCTGATAACATAGAATTAG+GGG - Chr1:69944945-69944964 MsG0180003906.01.T01:CDS 35.0%
CTCGCTGATAACATAGAATT+AGG - Chr1:69944943-69944962 MsG0180003906.01.T01:CDS 35.0%
GAATTGAAAACTTACTCCCA+TGG + Chr1:69944276-69944295 None:intergenic 35.0%
GAGTACACATCAAGACTAAT+TGG + Chr1:69942628-69942647 None:intergenic 35.0%
GGTAACTCTTGTACATCTTT+AGG + Chr1:69943381-69943400 None:intergenic 35.0%
GTCACTACCAATTAATTCAG+TGG + Chr1:69944305-69944324 None:intergenic 35.0%
TCATGAAATCCTTAATGCCT+TGG + Chr1:69944158-69944177 None:intergenic 35.0%
TGAAAGTGAAACAAACACTG+TGG - Chr1:69942219-69942238 MsG0180003906.01.T01:intron 35.0%
TGAAATTAGTACACGTACTC+AGG + Chr1:69944374-69944393 None:intergenic 35.0%
TGTGACAATAATAGAGGAAG+GGG + Chr1:69942004-69942023 None:intergenic 35.0%
! GAAGTGCTTGAGTATATACA+TGG + Chr1:69943171-69943190 None:intergenic 35.0%
! TTCATAAGTTGGGACATAGT+CGG + Chr1:69944217-69944236 None:intergenic 35.0%
! TTCTCCTTTGGCTTAAATTG+TGG + Chr1:69942286-69942305 None:intergenic 35.0%
!! AACTTGATAATGGAAGTTGC+AGG - Chr1:69942082-69942101 MsG0180003906.01.T01:intron 35.0%
!! ACTTGATAATGGAAGTTGCA+GGG - Chr1:69942083-69942102 MsG0180003906.01.T01:intron 35.0%
!!! ATTACTTCTGTTGTTTTCCC+TGG + Chr1:69942169-69942188 None:intergenic 35.0%
!!! GGAGTTAAACATTTTGGCTA+AGG + Chr1:69943419-69943438 None:intergenic 35.0%
ACGTACTCAGGTGTAATTGT+TGG + Chr1:69944362-69944381 None:intergenic 40.0%
ATCACAAAGGAATGGAACAC+AGG + Chr1:69942523-69942542 None:intergenic 40.0%
ATCATACTAACCGAGTCCAA+TGG + Chr1:69944594-69944613 None:intergenic 40.0%
ATGAAAGGAAAGGAAGCCAT+TGG - Chr1:69944575-69944594 MsG0180003906.01.T01:intron 40.0%
CCATGGAAAAATGCAAGAAC+AGG - Chr1:69945165-69945184 MsG0180003906.01.T01:five_prime_UTR 40.0%
CGTGCATGTGAATATACACA+TGG - Chr1:69944059-69944078 MsG0180003906.01.T01:intron 40.0%
GAAGGAAATTGTGAATCCCA+AGG - Chr1:69944138-69944157 MsG0180003906.01.T01:intron 40.0%
GCTGAAAAAGGAGGAAAAGA+TGG - Chr1:69942105-69942124 MsG0180003906.01.T01:intron 40.0%
TGAACAACTTACTTAGCAGG+AGG + Chr1:69942340-69942359 None:intergenic 40.0%
TGTTTGAGGAAACTGAACTG+AGG - Chr1:69942128-69942147 MsG0180003906.01.T01:intron 40.0%
! ATAGAGGAAGGGGTATAGAA+AGG + Chr1:69941994-69942013 None:intergenic 40.0%
! CCTGTTCTTGCATTTTTCCA+TGG + Chr1:69945168-69945187 None:intergenic 40.0%
! TTGCATTTTTCCATGGCTCT+TGG + Chr1:69945161-69945180 None:intergenic 40.0%
! TTGTGAATCCCAAGGCATTA+AGG - Chr1:69944146-69944165 MsG0180003906.01.T01:intron 40.0%
ATGAAGACAAAGATGGCGAC+TGG - Chr1:69944232-69944251 MsG0180003906.01.T01:intron 45.0%
GGAGGAAAAGATGGTGTTTG+AGG - Chr1:69942114-69942133 MsG0180003906.01.T01:intron 45.0%
GGGCAGCAAACATGTTCTTA+CGG + Chr1:69943252-69943271 None:intergenic 45.0%
GTGGTTTCTCTGTCTCAGTA+TGG + Chr1:69944468-69944487 None:intergenic 45.0%
TATATCAGCACCAAGAGCCA+TGG - Chr1:69945148-69945167 MsG0180003906.01.T01:five_prime_UTR 45.0%
TCTTTAGGTCTACTTTGCGG+AGG + Chr1:69943366-69943385 None:intergenic 45.0%
! TGATCCTCCACTGCTCTTTT+GGG + Chr1:69943272-69943291 None:intergenic 45.0%
!! AAAAAAAATAGTATATAATA+AGG + Chr1:69942777-69942796 None:intergenic 5.0%
!! AAAAATAAAAAAAAATAGTA+AGG + Chr1:69942744-69942763 None:intergenic 5.0%
!!! AACTATTTTTAAAATTTATA+TGG + Chr1:69942914-69942933 None:intergenic 5.0%
!!! ACTATTTTTTTTTATTTTTT+TGG - Chr1:69942745-69942764 MsG0180003906.01.T01:intron 5.0%
ACGTATAGGGCACAAGTGGT+AGG - Chr1:69943205-69943224 MsG0180003906.01.T01:intron 50.0%
ACTGAACTGAGGCTAGGACT+TGG - Chr1:69942139-69942158 MsG0180003906.01.T01:intron 50.0%
AGCAGAAGAGCCTTCTCCTT+TGG + Chr1:69942298-69942317 None:intergenic 50.0%
AGGTCTACTTTGCGGAGGTA+AGG + Chr1:69943361-69943380 None:intergenic 50.0%
AGTTGCAGGGCTGAAAAAGG+AGG - Chr1:69942096-69942115 MsG0180003906.01.T01:intron 50.0%
CGTATAGGGCACAAGTGGTA+GGG - Chr1:69943206-69943225 MsG0180003906.01.T01:intron 50.0%
CTGTACGTATAGGGCACAAG+TGG - Chr1:69943201-69943220 MsG0180003906.01.T01:intron 50.0%
GAGGAAACTGAACTGAGGCT+AGG - Chr1:69942133-69942152 MsG0180003906.01.T01:intron 50.0%
GCTCTTCTGCTCTCTGATTC+TGG - Chr1:69942307-69942326 MsG0180003906.01.T01:intron 50.0%
GCTTGTCGGTGATGTACCAT+GGG - Chr1:69944257-69944276 MsG0180003906.01.T01:intron 50.0%
GGAAAGGAAGCCATTGGACT+CGG - Chr1:69944581-69944600 MsG0180003906.01.T01:intron 50.0%
GGAAGTTGCAGGGCTGAAAA+AGG - Chr1:69942093-69942112 MsG0180003906.01.T01:intron 50.0%
GGAGACATTATGTGAGACGC+AGG + Chr1:69944977-69944996 None:intergenic 50.0%
TGCTTGTCGGTGATGTACCA+TGG - Chr1:69944256-69944275 MsG0180003906.01.T01:intron 50.0%
TTCTTACGGAATGACCGCAC+TGG + Chr1:69943238-69943257 None:intergenic 50.0%
TTTGCTGCCCAAAAGAGCAG+TGG - Chr1:69943262-69943281 MsG0180003906.01.T01:intron 50.0%
! AAGGCAAGAGCACGTTGAAG+TGG + Chr1:69941975-69941994 None:intergenic 50.0%
! AGGCAAGAGCACGTTGAAGT+GGG + Chr1:69941974-69941993 None:intergenic 50.0%
! CTAAGGCATCAGAGAGCTCT+GGG + Chr1:69943402-69943421 None:intergenic 50.0%
! CTGATCCTCCACTGCTCTTT+TGG + Chr1:69943273-69943292 None:intergenic 50.0%
AGGCTAGGACTTGGATTGCC+AGG - Chr1:69942148-69942167 MsG0180003906.01.T01:intron 55.0%
ATAGGGCACAAGTGGTAGGG+TGG - Chr1:69943209-69943228 MsG0180003906.01.T01:intron 55.0%
GATGGCGACTGGATGCTTGT+CGG - Chr1:69944243-69944262 MsG0180003906.01.T01:intron 55.0%
GGCTAGGACTTGGATTGCCA+GGG - Chr1:69942149-69942168 MsG0180003906.01.T01:intron 55.0%
TGGCGGTGAAACTCGTCTGA+CGG - Chr1:69944911-69944930 MsG0180003906.01.T01:CDS 55.0%
TTACGGAATGACCGCACTGG+TGG + Chr1:69943235-69943254 None:intergenic 55.0%
! GCAAGAGCACGTTGAAGTGG+GGG + Chr1:69941972-69941991 None:intergenic 55.0%
! GCTAAGGCATCAGAGAGCTC+TGG + Chr1:69943403-69943422 None:intergenic 55.0%
! GGCAAGAGCACGTTGAAGTG+GGG + Chr1:69941973-69941992 None:intergenic 55.0%
GCTGCCCAAAAGAGCAGTGG+AGG - Chr1:69943265-69943284 MsG0180003906.01.T01:intron 60.0%
TGGTAGGGTGGCCACCAGTG+CGG - Chr1:69943221-69943240 MsG0180003906.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 69941969 69945193 69941969 ID=MsG0180003906.01;Name=MsG0180003906.01
Chr1 mRNA 69941969 69945193 69941969 ID=MsG0180003906.01.T01;Parent=MsG0180003906.01;Name=MsG0180003906.01.T01;_AED=0.38;_eAED=0.40;_QI=122|0.5|0.4|1|0.75|0.6|5|0|250
Chr1 exon 69941969 69942041 69941969 ID=MsG0180003906.01.T01:exon:52281;Parent=MsG0180003906.01.T01
Chr1 exon 69942556 69942621 69942556 ID=MsG0180003906.01.T01:exon:52280;Parent=MsG0180003906.01.T01
Chr1 exon 69942882 69943002 69942882 ID=MsG0180003906.01.T01:exon:52279;Parent=MsG0180003906.01.T01
Chr1 exon 69943714 69943949 69943714 ID=MsG0180003906.01.T01:exon:52278;Parent=MsG0180003906.01.T01
Chr1 exon 69944815 69945193 69944815 ID=MsG0180003906.01.T01:exon:52277;Parent=MsG0180003906.01.T01
Chr1 five_prime_UTR 69945072 69945193 69945072 ID=MsG0180003906.01.T01:five_prime_utr;Parent=MsG0180003906.01.T01
Chr1 CDS 69944815 69945071 69944815 ID=MsG0180003906.01.T01:cds;Parent=MsG0180003906.01.T01
Chr1 CDS 69943714 69943949 69943714 ID=MsG0180003906.01.T01:cds;Parent=MsG0180003906.01.T01
Chr1 CDS 69942882 69943002 69942882 ID=MsG0180003906.01.T01:cds;Parent=MsG0180003906.01.T01
Chr1 CDS 69942556 69942621 69942556 ID=MsG0180003906.01.T01:cds;Parent=MsG0180003906.01.T01
Chr1 CDS 69941969 69942041 69941969 ID=MsG0180003906.01.T01:cds;Parent=MsG0180003906.01.T01
Gene Sequence

>MsG0180003906.01.T01

ATGGAAGTTGCAGGGCTGAAAAAGGAGGAAAAGATGGTGTTTGAGGAAACTGAACTGAGGCTAGGACTTGGATTGCCAGGGAAAACAACAGAAGTAATAAGGAAGAGAGGTTTTTCTGAAACTGAGAGTGAAAGTGAAACAAACACTGTGGATTTGAAGCTTAATCTTTCTACTAAGGAAGGAGCAACAGATCCACAATTTAAGCCAAAGGAGAAGGCTCTTCTGCTCTCTGATTCTGGTGTCAAGCCTCCTGCTAAGGCACAAGTGGTAGGGTGGCCACCAGTGCGGTCATTCCGTAAGAACATGTTTGCTGCCCAAAAGAGCAGTGGAGGATCAGAAGAAAGTGAAAAGAAGAATAGCACTAATCCAATAAGCTTTGTGAAAGTTAGTATGGATGGAGCACCTTACCTCCGCAAAGTAGACCTAAAGATGTACAAGAGTTACCCAGAGCTCTCTGATGCCTTAGCCAAAATGTTTAACTCCTTTACCACAGGCATTAAGGATTTCATGAATGAGAGTAATAAGTTGATGGATCTATTGAACAGCTCCGACTATGTCCCAACTTATGAAGACAAAGATGGCGACTGGATGCTTGTCGGTGATGTACCATGGGAGATGTTTATTGATTCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCCATTGGACTCGGTTACAAAATAACGGTAATTTTTATTATATATATATCAGCACCAAGAGCCATGGAAAAATGCAAGAACAGGAGCTAG

Protein sequence

>MsG0180003906.01.T01

MEVAGLKKEEKMVFEETELRLGLGLPGKTTEVIRKRGFSETESESETNTVDLKLNLSTKEGATDPQFKPKEKALLLSDSGVKPPAKAQVVGWPPVRSFRKNMFAAQKSSGGSEESEKKNSTNPISFVKVSMDGAPYLRKVDLKMYKSYPELSDALAKMFNSFTTGIKDFMNESNKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFIDSCKRLRIMKGKEAIGLGYKITVIFIIYISAPRAMEKCKNRS*