AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041640.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041640.01.T01 MTR_7g114960 93.305 463 26 4 1 462 1 459 0.0 881
MsG0780041640.01.T01 MTR_1g011660 32.328 464 275 12 9 455 5 446 4.73e-71 232
MsG0780041640.01.T01 MTR_2g036780 26.608 451 260 21 16 440 19 424 1.60e-26 111
MsG0780041640.01.T01 MTR_4g127650 26.802 444 298 13 8 434 9 442 1.95e-24 105
MsG0780041640.01.T01 MTR_8g096530 27.168 346 211 12 31 355 28 353 3.37e-24 105
MsG0780041640.01.T01 MTR_2g105330 24.096 415 274 13 39 437 33 422 4.71e-24 104
MsG0780041640.01.T01 MTR_1g035890 26.058 449 265 20 16 440 18 423 4.93e-24 104
MsG0780041640.01.T01 MTR_2g064495 24.096 415 274 13 39 437 33 422 2.67e-23 102
MsG0780041640.01.T01 MTR_3g100150 25.495 455 284 19 16 451 18 436 7.71e-23 101
MsG0780041640.01.T01 MTR_8g075610 26.923 338 201 11 41 356 26 339 2.86e-22 99.0
MsG0780041640.01.T01 MTR_4g007540 24.272 412 278 13 39 437 33 423 6.21e-22 98.2
MsG0780041640.01.T01 MTR_3g101960 27.136 398 261 10 61 446 65 445 1.49e-20 94.4
MsG0780041640.01.T01 MTR_7g027175 23.706 367 247 9 6 355 12 362 2.08e-20 93.6
MsG0780041640.01.T01 MTR_4g097090 26.727 333 208 10 46 356 45 363 3.29e-20 93.2
MsG0780041640.01.T01 MTR_3g101970 24.627 402 254 10 61 447 66 433 4.20e-19 89.7
MsG0780041640.01.T01 MTR_3g098980 26.075 372 240 15 1 355 6 359 4.60e-19 89.7
MsG0780041640.01.T01 MTR_3g086020 24.045 445 300 15 6 447 2 411 1.79e-17 84.7
MsG0780041640.01.T01 MTR_5g076700 25.309 324 201 13 45 346 46 350 6.17e-16 80.1
MsG0780041640.01.T01 MTR_3g102010 25.926 405 263 15 61 447 62 447 6.68e-16 80.1
MsG0780041640.01.T01 MTR_3g026950 22.897 428 271 13 31 422 23 427 8.46e-16 79.7
MsG0780041640.01.T01 MTR_4g055170 24.348 345 233 12 31 356 33 368 1.11e-15 79.3
MsG0780041640.01.T01 MTR_3g101900 25.000 328 228 10 38 353 40 361 5.30e-15 77.4
MsG0780041640.01.T01 MTR_7g085930 21.164 378 266 9 9 362 6 375 5.55e-15 77.4
MsG0780041640.01.T01 MTR_3g102020 24.880 418 247 12 61 447 66 447 6.19e-15 77.0
MsG0780041640.01.T01 MTR_5g013270 29.187 209 127 7 45 240 49 249 8.66e-15 75.9
MsG0780041640.01.T01 MTR_6g053810 25.087 287 190 9 64 334 71 348 1.24e-14 76.3
MsG0780041640.01.T01 MTR_3g049150 24.342 456 302 17 9 440 2 438 5.93e-14 73.9
MsG0780041640.01.T01 MTR_8g079950 25.148 338 207 12 8 325 2 313 8.10e-14 73.6
MsG0780041640.01.T01 MTR_7g084940 21.622 370 253 10 6 352 7 362 1.09e-13 73.2
MsG0780041640.01.T01 MTR_3g101930 25.521 384 243 11 25 373 24 399 1.21e-13 73.2
MsG0780041640.01.T01 MTR_7g114470 23.577 369 236 14 43 392 45 386 1.58e-13 72.8
MsG0780041640.01.T01 MTR_5g084850 23.313 326 217 10 8 320 2 307 1.68e-13 72.8
MsG0780041640.01.T01 MTR_5g026320 21.739 322 227 9 44 355 55 361 1.90e-13 72.4
MsG0780041640.01.T01 MTR_7g114520 24.383 324 209 11 43 346 45 352 6.52e-13 70.9
MsG0780041640.01.T01 MTR_4g022760 26.074 349 197 14 60 368 51 378 7.53e-13 70.5
MsG0780041640.01.T01 MTR_5g084870 23.333 330 220 10 8 325 2 310 4.25e-12 68.2
MsG0780041640.01.T01 MTR_3g026310 25.836 329 208 14 45 349 41 357 6.12e-12 67.8
MsG0780041640.01.T01 MTR_4g022825 24.765 319 202 11 60 353 51 356 6.12e-12 67.8
MsG0780041640.01.T01 MTR_7g086000 22.884 319 206 8 64 356 60 364 4.64e-11 65.1
MsG0780041640.01.T01 MTR_1g081660 23.006 326 213 14 27 332 35 342 6.03e-11 64.7
MsG0780041640.01.T01 MTR_3g465910 24.611 321 192 14 64 356 68 366 6.54e-11 64.7
MsG0780041640.01.T01 MTR_3g112180 23.602 322 206 11 57 354 54 359 7.25e-11 64.3
MsG0780041640.01.T01 MTR_3g465930 24.127 315 207 12 64 358 69 371 7.60e-11 64.3
MsG0780041640.01.T01 MTR_4g022720 25.581 344 228 12 22 349 15 346 9.25e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041640.01.T01 AT4G29250 29.828 466 285 15 8 455 13 454 7.39e-57 195
MsG0780041640.01.T01 AT4G24510 26.484 438 271 19 16 440 13 412 1.28e-28 117
MsG0780041640.01.T01 AT3G23840 25.721 416 247 17 16 418 19 385 1.72e-24 105
MsG0780041640.01.T01 AT5G41040 27.300 337 218 9 31 352 38 362 7.66e-24 103
MsG0780041640.01.T01 AT5G41040 27.300 337 218 9 31 352 54 378 8.82e-24 103
MsG0780041640.01.T01 AT3G48720 25.000 340 230 11 29 355 28 355 1.43e-21 97.1
MsG0780041640.01.T01 AT5G63560 25.220 341 224 9 29 355 28 351 1.07e-20 94.4
MsG0780041640.01.T01 AT4G13840 23.303 442 276 17 16 440 21 416 2.65e-20 93.2
MsG0780041640.01.T01 AT1G65450 24.474 380 250 10 5 361 14 379 3.96e-19 90.1
MsG0780041640.01.T01 AT2G19070 24.324 370 251 7 9 359 4 363 4.57e-19 89.7
MsG0780041640.01.T01 AT5G48930 23.786 412 278 14 40 437 34 423 2.06e-18 87.8
MsG0780041640.01.T01 AT5G07080 25.072 347 223 12 64 392 70 397 2.11e-18 87.8
MsG0780041640.01.T01 AT5G02890 30.864 162 99 5 34 187 36 192 1.11e-17 84.7
MsG0780041640.01.T01 AT5G57840 24.860 358 236 12 21 359 12 355 1.08e-16 82.4
MsG0780041640.01.T01 AT1G24420 27.346 373 233 16 97 455 88 436 8.85e-16 79.7
MsG0780041640.01.T01 AT1G24420 27.346 373 233 16 97 455 88 436 8.85e-16 79.7
MsG0780041640.01.T01 AT1G24430 23.944 284 197 5 29 311 27 292 1.22e-15 79.3
MsG0780041640.01.T01 AT1G78990 24.620 329 218 11 43 357 46 358 2.10e-14 75.5
MsG0780041640.01.T01 AT1G27620 24.281 313 198 11 64 354 58 353 7.60e-14 73.9
MsG0780041640.01.T01 AT5G42830 23.515 404 277 12 61 449 61 447 1.42e-13 72.8
MsG0780041640.01.T01 AT5G16410 24.324 370 245 14 2 355 29 379 2.22e-13 72.4
MsG0780041640.01.T01 AT5G23940 22.996 474 304 22 8 447 2 448 3.31e-13 72.0
MsG0780041640.01.T01 AT5G67150 24.096 415 253 15 64 448 61 443 5.25e-13 71.2
MsG0780041640.01.T01 AT1G32910 24.595 309 202 11 64 355 65 359 2.54e-12 68.9
MsG0780041640.01.T01 AT5G07870 23.628 419 276 12 54 449 62 459 1.29e-11 67.0
MsG0780041640.01.T01 AT5G23970 23.649 296 177 13 27 306 20 282 5.56e-11 64.7

Find 155 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCCTCTCAGCTCTATTT+TGG 0.152255 7:+93352928 MsG0780041640.01.T01:CDS
TCACTCCCAACTGGATATTT+TGG 0.171448 7:+93353041 MsG0780041640.01.T01:CDS
ACACATTGCCACACAATATC+TGG 0.184668 7:-93353777 None:intergenic
CTGTTTGAGCCAACAATTAT+TGG 0.196140 7:+93353558 MsG0780041640.01.T01:three_prime_UTR
AGGATGGTGGTACTGGTAAT+TGG 0.217298 7:+93351417 MsG0780041640.01.T01:CDS
TCTTTCCCATACATGCATTT+AGG 0.229198 7:-93353242 None:intergenic
GAAACTGAGGAAGGGAAATT+TGG 0.242297 7:+93353215 MsG0780041640.01.T01:CDS
TGGGGCTGTGGCGGTGAGTT+TGG 0.257423 7:-93352701 None:intergenic
GAAATGGAGAATGGTGAATT+AGG 0.275452 7:+93353104 MsG0780041640.01.T01:CDS
ATGGTTTAGGTCATTTGAAT+TGG 0.295132 7:+93351316 MsG0780041640.01.T01:CDS
AGTTTGATTATGAATTTCTT+TGG 0.295727 7:-93352973 None:intergenic
TTAATAAGATTAGGCTTGTT+TGG 0.301885 7:+93353618 MsG0780041640.01.T01:three_prime_UTR
TGTTTGGAAGAATTAGTTAT+TGG 0.314360 7:+93353634 MsG0780041640.01.T01:three_prime_UTR
AACAGTACCTGAATTCTAAA+AGG 0.320982 7:-93351593 None:intergenic
GGGGCTGTGGCGGTGAGTTT+GGG 0.330855 7:-93352700 None:intergenic
AAGAAAGGTGGGTTGGAAAT+GGG 0.334991 7:-93352720 None:intergenic
CATCATCATTCTTCAAATCA+TGG 0.335273 7:+93352676 MsG0780041640.01.T01:CDS
GTTTGATTATGAATTTCTTT+GGG 0.355543 7:-93352972 None:intergenic
TCGATATACCCGACAATAAC+GGG 0.355602 7:+93351371 MsG0780041640.01.T01:CDS
ATTATGAGACCGATTAAATC+TGG 0.362021 7:+93353699 MsG0780041640.01.T01:three_prime_UTR
GAAGAAAGGTGGGTTGGAAA+TGG 0.366284 7:-93352721 None:intergenic
AAGTCAAATGGGGTGGCATT+AGG 0.368079 7:-93352909 None:intergenic
CACAACACATACAACACATC+TGG 0.376773 7:-93353750 None:intergenic
GGAACACCTAAATGCATGTA+TGG 0.381659 7:+93353236 MsG0780041640.01.T01:CDS
AAGGAGGAGGATGGTGGTAC+TGG 0.384784 7:+93351410 MsG0780041640.01.T01:CDS
GGTGAAGAGGTAGTATTGAT+TGG 0.386573 7:-93352747 None:intergenic
GGATGGTGGTACTGGTAATT+GGG 0.389341 7:+93351418 MsG0780041640.01.T01:CDS
CCCAACCGGCCCGTTATTGT+CGG 0.402575 7:-93351380 None:intergenic
GTCAAGCAGACCAGTGAGTT+CGG 0.405126 7:+93351208 MsG0780041640.01.T01:CDS
AAAGAAGGTGGTGTAGCAAT+AGG 0.409784 7:+93352615 MsG0780041640.01.T01:CDS
CAGCCAGCAAGGATAATCTT+TGG 0.411817 7:-93353500 None:intergenic
CTATCATCATCTTCTGCTAC+TGG 0.416588 7:+93351509 MsG0780041640.01.T01:CDS
TTGTGTGGCCCAGATTTAAT+CGG 0.422354 7:-93353708 None:intergenic
TTCCGGTAGGAGACTTAAAT+AGG 0.422742 7:+93353935 MsG0780041640.01.T01:three_prime_UTR
TTGGATGAATTAATAAGATT+AGG 0.422872 7:+93353609 MsG0780041640.01.T01:three_prime_UTR
GTCGATATACCCGACAATAA+CGG 0.423205 7:+93351370 MsG0780041640.01.T01:CDS
TCAAGCAGACCAGTGAGTTC+GGG 0.424977 7:+93351209 MsG0780041640.01.T01:CDS
AATTTGGAATGTTGTTGGTT+AGG 0.426812 7:-93352773 None:intergenic
GAGCCAAAGATTATCCTTGC+TGG 0.432338 7:+93353497 MsG0780041640.01.T01:CDS
TAATTCACACACACTTGAAA+GGG 0.433647 7:+93353141 MsG0780041640.01.T01:CDS
GGTTGGAAATGGGGCTGTGG+CGG 0.435915 7:-93352710 None:intergenic
GTACTGGTAATTGGGAAGTT+AGG 0.436148 7:+93351426 MsG0780041640.01.T01:CDS
GTCTACACCCGTCAACTTGT+GGG 0.443630 7:-93351237 None:intergenic
ATAAAACCATCACTCCCAAC+TGG 0.443926 7:+93353032 MsG0780041640.01.T01:CDS
TGCTGGTGTTAGAGTCATAA+AGG 0.445154 7:+93351457 MsG0780041640.01.T01:CDS
TTTAAGTCTCCTACCGGAAA+CGG 0.447129 7:-93353931 None:intergenic
CCTCCTTCTCTCGGCCCAAC+CGG 0.448689 7:-93351394 None:intergenic
TGTTGTAGCTAAATTCCGTT+TGG 0.449947 7:+93353590 MsG0780041640.01.T01:three_prime_UTR
GTGGGTTGGAAATGGGGCTG+TGG 0.452154 7:-93352713 None:intergenic
CCGACAATAACGGGCCGGTT+GGG 0.453713 7:+93351380 MsG0780041640.01.T01:CDS
AAATAAAGTCTTCAATAGAA+TGG 0.455151 7:+93353177 MsG0780041640.01.T01:CDS
GAGCTGAGAGGAAGTCAAAT+GGG 0.457275 7:-93352920 None:intergenic
ACTACCCTGCCAATAATTGT+TGG 0.465832 7:-93353567 None:intergenic
CACACTTGCACCAATCCATC+GGG 0.467384 7:-93353854 None:intergenic
TGAGGCACAGCTTATTGCTT+GGG 0.472460 7:+93351538 MsG0780041640.01.T01:CDS
TTGAGCCAACAATTATTGGC+AGG 0.473229 7:+93353562 MsG0780041640.01.T01:three_prime_UTR
GGATGAATTTGGAATGTTGT+TGG 0.474167 7:-93352778 None:intergenic
ATCTTATTAATTCATCCAAA+CGG 0.477052 7:-93353605 None:intergenic
TGTACTAGAATGAAATTGTT+TGG 0.479568 7:+93353875 MsG0780041640.01.T01:three_prime_UTR
TCAGACAATGATTCCCTCAA+TGG 0.481558 7:-93351341 None:intergenic
CTAAAAGGTGACCATGTGCT+AGG 0.487865 7:-93351578 None:intergenic
CGTTTCCAAAATATCCAGTT+GGG 0.487866 7:-93353046 None:intergenic
TTGATTGGAGTGAAGAAAGG+TGG 0.490101 7:-93352732 None:intergenic
ATTTGAATTGGATCCATTGA+GGG 0.492343 7:+93351328 MsG0780041640.01.T01:CDS
GGTCTACACCCGTCAACTTG+TGG 0.496901 7:-93351238 None:intergenic
CACCATCCTCCTCCTTCTCT+CGG 0.500291 7:-93351403 None:intergenic
ATGAGGCACAGCTTATTGCT+TGG 0.502747 7:+93351537 MsG0780041640.01.T01:CDS
AAATATCCAGTTGGGAGTGA+TGG 0.503498 7:-93353038 None:intergenic
TTAATTCACACACACTTGAA+AGG 0.506149 7:+93353140 MsG0780041640.01.T01:CDS
CATTTGAATTGGATCCATTG+AGG 0.507624 7:+93351327 MsG0780041640.01.T01:CDS
AGAAAGGTGGGTTGGAAATG+GGG 0.508550 7:-93352719 None:intergenic
GGGCCGGTTGGGCCGAGAGA+AGG 0.509409 7:+93351391 MsG0780041640.01.T01:CDS
AACTGTGATAGTAATGTTGA+AGG 0.511473 7:+93353427 MsG0780041640.01.T01:CDS
CCAACCGGCCCGTTATTGTC+GGG 0.512607 7:-93351379 None:intergenic
GTGTATGATAACTCATACCA+TGG 0.520501 7:-93351259 None:intergenic
GGAATGTTGTTGGTTAGGAT+TGG 0.521481 7:-93352768 None:intergenic
CACATTGCCACACAATATCT+GGG 0.523912 7:-93353776 None:intergenic
GTGGGGAATGTGGACGATGA+AGG 0.524565 7:+93353362 MsG0780041640.01.T01:CDS
GATTATCCTTGCTGGCTGTA+GGG 0.526008 7:+93353505 MsG0780041640.01.T01:CDS
ATTAGTTATTGGCATGGCAG+TGG 0.526180 7:+93353645 MsG0780041640.01.T01:three_prime_UTR
AAAATTGAAGAAATGGAGAA+TGG 0.526372 7:+93353095 MsG0780041640.01.T01:CDS
GTATTGATTGGAGTGAAGAA+AGG 0.526703 7:-93352735 None:intergenic
AGAATGGTTTGAGTCACAAA+AGG 0.528973 7:+93353193 MsG0780041640.01.T01:CDS
CCCGACAATAACGGGCCGGT+TGG 0.531253 7:+93351379 MsG0780041640.01.T01:CDS
CCGGTTGGGCCGAGAGAAGG+AGG 0.533083 7:+93351394 MsG0780041640.01.T01:CDS
AGATTATCCTTGCTGGCTGT+AGG 0.533649 7:+93353504 MsG0780041640.01.T01:CDS
TGATTGGAGTGAAGAAAGGT+GGG 0.533702 7:-93352731 None:intergenic
ATAGTGATGCCTTCTTCAGA+TGG 0.535268 7:+93353392 MsG0780041640.01.T01:CDS
GCAAACCCTCCATCTGAAGA+AGG 0.535965 7:-93353401 None:intergenic
AGAGCTGAGAGGAAGTCAAA+TGG 0.537078 7:-93352921 None:intergenic
GGTAAGACCCACAAGTTGAC+GGG 0.538277 7:+93351230 MsG0780041640.01.T01:CDS
AGCTCATGTTTCTTGTCGAG+TGG 0.541963 7:+93353343 MsG0780041640.01.T01:CDS
TGGGTCTTACCCGAACTCAC+TGG 0.545145 7:-93351218 None:intergenic
TGAACTTGAGAATTTGAAAG+TGG 0.545632 7:-93352844 None:intergenic
TATGTTTGATGAAGAGGTAA+TGG 0.545889 7:-93352814 None:intergenic
CAGATAAATAGCTTCAAAGA+AGG 0.547152 7:+93352600 MsG0780041640.01.T01:intron
GCTCATGTTTCTTGTCGAGT+GGG 0.548354 7:+93353344 MsG0780041640.01.T01:CDS
GTTGGTTAGGATTGGTGAAG+AGG 0.549410 7:-93352760 None:intergenic
GTCAGAGACAGATCAGTGTA+AGG 0.552279 7:+93351157 MsG0780041640.01.T01:CDS
CACAAAGGTGGTGTGTTGTG+TGG 0.552306 7:+93353726 MsG0780041640.01.T01:three_prime_UTR
TGAGAATTTGAAAGTGGCTG+TGG 0.559985 7:-93352838 None:intergenic
ACACACTTGCACCAATCCAT+CGG 0.561497 7:-93353855 None:intergenic
TGGAGTGAAGAAAGGTGGGT+TGG 0.561597 7:-93352727 None:intergenic
TGATGCCTTCTTCAGATGGA+GGG 0.561884 7:+93353396 MsG0780041640.01.T01:CDS
GAAGTTAGGTGTAATGATGC+TGG 0.568774 7:+93351440 MsG0780041640.01.T01:CDS
CTCATGTTTCTTGTCGAGTG+GGG 0.569487 7:+93353345 MsG0780041640.01.T01:CDS
GACCTATTTAAGTCTCCTAC+CGG 0.573310 7:-93353937 None:intergenic
ACAACACATACAACACATCT+GGG 0.574986 7:-93353749 None:intergenic
GGAAGAATTAGTTATTGGCA+TGG 0.577018 7:+93353639 MsG0780041640.01.T01:three_prime_UTR
AACACTGGATTCAAAACTAA+CGG 0.577037 7:+93351181 MsG0780041640.01.T01:CDS
GGGTAAGACCCACAAGTTGA+CGG 0.579828 7:+93351229 MsG0780041640.01.T01:CDS
CACAACACACCACCTTTGTG+TGG 0.581623 7:-93353723 None:intergenic
GTGATGCCTTCTTCAGATGG+AGG 0.582800 7:+93353395 MsG0780041640.01.T01:CDS
AAGTGCTGTCCCCGATGGAT+TGG 0.583146 7:+93353844 MsG0780041640.01.T01:three_prime_UTR
CACACAAGTGCTGTCCCCGA+TGG 0.583345 7:+93353839 MsG0780041640.01.T01:three_prime_UTR
GGCCGAGAGAAGGAGGAGGA+TGG 0.583468 7:+93351401 MsG0780041640.01.T01:CDS
GAACACCTAAATGCATGTAT+GGG 0.584202 7:+93353237 MsG0780041640.01.T01:CDS
TCACAAAAGGAAACTGAGGA+AGG 0.584832 7:+93353206 MsG0780041640.01.T01:CDS
TAAAAGGTGACCATGTGCTA+GGG 0.586599 7:-93351577 None:intergenic
TAGAGTCATAAAGGCTAATG+TGG 0.586817 7:+93351466 MsG0780041640.01.T01:CDS
GATGAAGAGGTAATGGTCTG+TGG 0.593007 7:-93352807 None:intergenic
AGATCAGTGTAAGGTAACAC+TGG 0.594403 7:+93351166 MsG0780041640.01.T01:CDS
TGTGGCTATGTTTGATGAAG+AGG 0.596735 7:-93352820 None:intergenic
GACCATGTGCTAGGGTCATG+AGG 0.598936 7:-93351569 None:intergenic
TTTATAATATCACCTACCGT+AGG 0.599134 7:-93353961 None:intergenic
GCGTTTCCAAAATATCCAGT+TGG 0.599293 7:-93353047 None:intergenic
CGAGAGAAGGAGGAGGATGG+TGG 0.600282 7:+93351404 MsG0780041640.01.T01:CDS
TGTGATAGTAATGTTGAAGG+AGG 0.600877 7:+93353430 MsG0780041640.01.T01:CDS
ATGTTGAAGGAGGAAGAACT+TGG 0.600995 7:+93353440 MsG0780041640.01.T01:CDS
AGACTTAAATAGGTCTCCTA+CGG 0.605396 7:+93353945 MsG0780041640.01.T01:three_prime_UTR
TTATGAGACCGATTAAATCT+GGG 0.606120 7:+93353700 MsG0780041640.01.T01:three_prime_UTR
TTCTTGTCGAGTGGGGAATG+TGG 0.607119 7:+93353352 MsG0780041640.01.T01:CDS
ATAAATAGCTTCAAAGAAGG+TGG 0.607597 7:+93352603 MsG0780041640.01.T01:CDS
TGGATAGTACTATTGATGAA+TGG 0.608688 7:+93351486 MsG0780041640.01.T01:CDS
GTTGGGCCGAGAGAAGGAGG+AGG 0.619970 7:+93351397 MsG0780041640.01.T01:CDS
TTCTGCTACTGGATCTGATG+AGG 0.621739 7:+93351520 MsG0780041640.01.T01:CDS
CACAAAAGGAAACTGAGGAA+GGG 0.622438 7:+93353207 MsG0780041640.01.T01:CDS
AATTCACACACACTTGAAAG+GGG 0.623746 7:+93353142 MsG0780041640.01.T01:CDS
TGAGCCAACAATTATTGGCA+GGG 0.632053 7:+93353563 MsG0780041640.01.T01:three_prime_UTR
ATTAAATCTGGGCCACACAA+AGG 0.632364 7:+93353711 MsG0780041640.01.T01:three_prime_UTR
TTAAATAGGTCTCCTACGGT+AGG 0.634859 7:+93353949 MsG0780041640.01.T01:three_prime_UTR
TGCCTCATGACCCTAGCACA+TGG 0.645951 7:+93351567 MsG0780041640.01.T01:CDS
AAATCTGGGCCACACAAAGG+TGG 0.648147 7:+93353714 MsG0780041640.01.T01:three_prime_UTR
ACTCGACAAGAAACATGAGC+TGG 0.648220 7:-93353341 None:intergenic
GATGTGTTGTATGTGTTGTG+TGG 0.649143 7:+93353753 MsG0780041640.01.T01:three_prime_UTR
TGAGAGGAAGTCAAATGGGG+TGG 0.650646 7:-93352916 None:intergenic
GTGTGGCAATGTGTGTTGTG+TGG 0.655397 7:+93353786 MsG0780041640.01.T01:three_prime_UTR
TGAGTCACAAAAGGAAACTG+AGG 0.655458 7:+93353202 MsG0780041640.01.T01:CDS
TATACCCGACAATAACGGGC+CGG 0.671866 7:+93351375 MsG0780041640.01.T01:CDS
AAGTTGACGGGTGTAGACCA+TGG 0.675286 7:+93351242 MsG0780041640.01.T01:CDS
AGCTGAGAGGAAGTCAAATG+GGG 0.678609 7:-93352919 None:intergenic
TGTGTGGCCCAGATATTGTG+TGG 0.699295 7:+93353769 MsG0780041640.01.T01:three_prime_UTR
GAGTCCAAAATAGAGCTGAG+AGG 0.726138 7:-93352932 None:intergenic
ACTTGTGTGACATTATGTCA+CGG 0.775526 7:-93353825 None:intergenic
ACACTTGCACCAATCCATCG+GGG 0.780300 7:-93353853 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATCTTGTAATTTAAA+CGG - Chr7:93351849-93351868 None:intergenic 10.0%
!! ATTACAAAAATGAAGAAAAA+TGG + Chr7:93351297-93351316 MsG0780041640.01.T01:CDS 15.0%
!!! AGCAAAATAATATATTTTCA+TGG + Chr7:93352230-93352249 MsG0780041640.01.T01:intron 15.0%
!!! TTTGTTTATTTACTCATTTT+TGG + Chr7:93353906-93353925 MsG0780041640.01.T01:three_prime_UTR 15.0%
!! AAAATGAAGAAAAATGGTTT+AGG + Chr7:93351303-93351322 MsG0780041640.01.T01:CDS 20.0%
!! AAATAAAGTCTTCAATAGAA+TGG + Chr7:93353177-93353196 MsG0780041640.01.T01:CDS 20.0%
!! AGAAAAGGAAGAAATTAAAT+TGG - Chr7:93352152-93352171 None:intergenic 20.0%
!! AGTTTGATTATGAATTTCTT+TGG - Chr7:93352976-93352995 None:intergenic 20.0%
!! ATCTTATTAATTCATCCAAA+CGG - Chr7:93353608-93353627 None:intergenic 20.0%
!! ATGATTGATACTTAAAATTG+TGG - Chr7:93351701-93351720 None:intergenic 20.0%
!! ATTAAAATATACACCTCAAA+TGG - Chr7:93352314-93352333 None:intergenic 20.0%
!! GTATAGATAAATTGAATTAG+TGG + Chr7:93352521-93352540 MsG0780041640.01.T01:intron 20.0%
!! GTTTGATTATGAATTTCTTT+GGG - Chr7:93352975-93352994 None:intergenic 20.0%
!! TTCACTAAAAATTGAAGAAA+TGG + Chr7:93353088-93353107 MsG0780041640.01.T01:CDS 20.0%
!! TTGGATGAATTAATAAGATT+AGG + Chr7:93353609-93353628 MsG0780041640.01.T01:three_prime_UTR 20.0%
!!! AATAGATTTTTTTCCTACTT+TGG - Chr7:93351748-93351767 None:intergenic 20.0%
!!! ACATTTTTTGTTTTGGATTT+TGG - Chr7:93352889-93352908 None:intergenic 20.0%
! AAAAATAACGTGAAAGATCT+AGG - Chr7:93351968-93351987 None:intergenic 25.0%
! AAAATTGAAGAAATGGAGAA+TGG + Chr7:93353095-93353114 MsG0780041640.01.T01:CDS 25.0%
! CAATAATGTAGATGTAAATC+AGG - Chr7:93352408-93352427 None:intergenic 25.0%
! CATCTTTCTCTTAATCTAAA+TGG + Chr7:93352029-93352048 MsG0780041640.01.T01:intron 25.0%
! CATTTAGATTAAGAGAAAGA+TGG - Chr7:93352031-93352050 None:intergenic 25.0%
! CTGATTTACATCTACATTAT+TGG + Chr7:93352406-93352425 MsG0780041640.01.T01:intron 25.0%
! GAAAATGGAGAAAAATTCAT+GGG + Chr7:93351915-93351934 MsG0780041640.01.T01:intron 25.0%
! GTATGAAGTAATAAATTGGT+GGG + Chr7:93352569-93352588 MsG0780041640.01.T01:intron 25.0%
! TATGAAGTAATAAATTGGTG+GGG + Chr7:93352570-93352589 MsG0780041640.01.T01:intron 25.0%
! TGTACTAGAATGAAATTGTT+TGG + Chr7:93353875-93353894 MsG0780041640.01.T01:three_prime_UTR 25.0%
! TGTTTGGAAGAATTAGTTAT+TGG + Chr7:93353634-93353653 MsG0780041640.01.T01:three_prime_UTR 25.0%
!! GAAGGTATGAAGTAATAAAT+TGG + Chr7:93352565-93352584 MsG0780041640.01.T01:intron 25.0%
!! TGAAGACTATAATCTAAAAC+TGG + Chr7:93352084-93352103 MsG0780041640.01.T01:intron 25.0%
!! TTAATAAGATTAGGCTTGTT+TGG + Chr7:93353618-93353637 MsG0780041640.01.T01:three_prime_UTR 25.0%
!!! ATTTTTTTCCTACTTTGGTT+AGG - Chr7:93351743-93351762 None:intergenic 25.0%
!!! CATTAGGACATTTTTTGTTT+TGG - Chr7:93352896-93352915 None:intergenic 25.0%
!!! TTTATTTTTTTCAACCTGAG+AGG + Chr7:93351986-93352005 MsG0780041640.01.T01:intron 25.0%
AAAATATACACCTCAAATGG+AGG - Chr7:93352311-93352330 None:intergenic 30.0%
AACACTGGATTCAAAACTAA+CGG + Chr7:93351181-93351200 MsG0780041640.01.T01:CDS 30.0%
AACAGTACCTGAATTCTAAA+AGG - Chr7:93351596-93351615 None:intergenic 30.0%
AACTGTGATAGTAATGTTGA+AGG + Chr7:93353427-93353446 MsG0780041640.01.T01:CDS 30.0%
ATAAATAGCTTCAAAGAAGG+TGG + Chr7:93352603-93352622 MsG0780041640.01.T01:CDS 30.0%
ATAAATTGAATTAGTGGCGT+GGG + Chr7:93352527-93352546 MsG0780041640.01.T01:intron 30.0%
ATGATGAAGTCTCTAATGAA+AGG - Chr7:93352371-93352390 None:intergenic 30.0%
ATGGTTTAGGTCATTTGAAT+TGG + Chr7:93351316-93351335 MsG0780041640.01.T01:CDS 30.0%
ATTATGAGACCGATTAAATC+TGG + Chr7:93353699-93353718 MsG0780041640.01.T01:three_prime_UTR 30.0%
ATTTGAATTGGATCCATTGA+GGG + Chr7:93351328-93351347 MsG0780041640.01.T01:CDS 30.0%
CAGATAAATAGCTTCAAAGA+AGG + Chr7:93352600-93352619 MsG0780041640.01.T01:intron 30.0%
CATCATCATTCTTCAAATCA+TGG + Chr7:93352676-93352695 MsG0780041640.01.T01:CDS 30.0%
CATTAGAGACTTCATCATAT+TGG + Chr7:93352373-93352392 MsG0780041640.01.T01:intron 30.0%
GGAAAATGGAGAAAAATTCA+TGG + Chr7:93351914-93351933 MsG0780041640.01.T01:intron 30.0%
GGTATGAAGTAATAAATTGG+TGG + Chr7:93352568-93352587 MsG0780041640.01.T01:intron 30.0%
TAATTCACACACACTTGAAA+GGG + Chr7:93353141-93353160 MsG0780041640.01.T01:CDS 30.0%
TATGTTTGATGAAGAGGTAA+TGG - Chr7:93352817-93352836 None:intergenic 30.0%
TGAACTTGAGAATTTGAAAG+TGG - Chr7:93352847-93352866 None:intergenic 30.0%
TGATGAAGTCTCTAATGAAA+GGG - Chr7:93352370-93352389 None:intergenic 30.0%
TGGATAGTACTATTGATGAA+TGG + Chr7:93351486-93351505 MsG0780041640.01.T01:CDS 30.0%
TTAATTCACACACACTTGAA+AGG + Chr7:93353140-93353159 MsG0780041640.01.T01:CDS 30.0%
TTATGAGACCGATTAAATCT+GGG + Chr7:93353700-93353719 MsG0780041640.01.T01:three_prime_UTR 30.0%
! AAATTGATAGTATACACGAG+AGG - Chr7:93352177-93352196 None:intergenic 30.0%
! AATTGATAGTATACACGAGA+GGG - Chr7:93352176-93352195 None:intergenic 30.0%
! AATTTGGAATGTTGTTGGTT+AGG - Chr7:93352776-93352795 None:intergenic 30.0%
!! TAACAGTATGAGCTATTTTG+TGG + Chr7:93351631-93351650 MsG0780041640.01.T01:intron 30.0%
!!! TTTGTTTTGGATTTTGGAGA+GGG - Chr7:93352883-93352902 None:intergenic 30.0%
!!! TTTTGTTTTGGATTTTGGAG+AGG - Chr7:93352884-93352903 None:intergenic 30.0%
AAATCACTTAAGGTTGTGGA+TGG + Chr7:93351893-93351912 MsG0780041640.01.T01:intron 35.0%
AATTCACACACACTTGAAAG+GGG + Chr7:93353142-93353161 MsG0780041640.01.T01:CDS 35.0%
ACAACACATACAACACATCT+GGG - Chr7:93353752-93353771 None:intergenic 35.0%
ACTTGTGTGACATTATGTCA+CGG - Chr7:93353828-93353847 None:intergenic 35.0%
AGAATGGTTTGAGTCACAAA+AGG + Chr7:93353193-93353212 MsG0780041640.01.T01:CDS 35.0%
AGACAAATCACTTAAGGTTG+TGG + Chr7:93351889-93351908 MsG0780041640.01.T01:intron 35.0%
AGACTTAAATAGGTCTCCTA+CGG + Chr7:93353945-93353964 MsG0780041640.01.T01:three_prime_UTR 35.0%
CAACATGCATATCCCAAAAA+GGG + Chr7:93351779-93351798 MsG0780041640.01.T01:intron 35.0%
CATTTGAATTGGATCCATTG+AGG + Chr7:93351327-93351346 MsG0780041640.01.T01:CDS 35.0%
CGTTTCCAAAATATCCAGTT+GGG - Chr7:93353049-93353068 None:intergenic 35.0%
CTGTTTGAGCCAACAATTAT+TGG + Chr7:93353558-93353577 MsG0780041640.01.T01:three_prime_UTR 35.0%
GAAATGGAGAATGGTGAATT+AGG + Chr7:93353104-93353123 MsG0780041640.01.T01:CDS 35.0%
GAACACCTAAATGCATGTAT+GGG + Chr7:93353237-93353256 MsG0780041640.01.T01:CDS 35.0%
GATAAATTGAATTAGTGGCG+TGG + Chr7:93352526-93352545 MsG0780041640.01.T01:intron 35.0%
GATGAAGTCTCTAATGAAAG+GGG - Chr7:93352369-93352388 None:intergenic 35.0%
GGAAGAATTAGTTATTGGCA+TGG + Chr7:93353639-93353658 MsG0780041640.01.T01:three_prime_UTR 35.0%
GTGTATGATAACTCATACCA+TGG - Chr7:93351262-93351281 None:intergenic 35.0%
TAGAGTCATAAAGGCTAATG+TGG + Chr7:93351466-93351485 MsG0780041640.01.T01:CDS 35.0%
TAGGAGAGACAAATCACTTA+AGG + Chr7:93351883-93351902 MsG0780041640.01.T01:intron 35.0%
TCTTTCCCATACATGCATTT+AGG - Chr7:93353245-93353264 None:intergenic 35.0%
TGTGATAGTAATGTTGAAGG+AGG + Chr7:93353430-93353449 MsG0780041640.01.T01:CDS 35.0%
TGTTGTAGCTAAATTCCGTT+TGG + Chr7:93353590-93353609 MsG0780041640.01.T01:three_prime_UTR 35.0%
TTAAGGTTGTGGATGGAAAA+TGG + Chr7:93351900-93351919 MsG0780041640.01.T01:intron 35.0%
! AGAGTTAACTTTTGTCTGCA+TGG + Chr7:93353262-93353281 MsG0780041640.01.T01:CDS 35.0%
! GGATGAATTTGGAATGTTGT+TGG - Chr7:93352781-93352800 None:intergenic 35.0%
! TTTTCTTGCCTAACCAAAGT+AGG + Chr7:93351732-93351751 MsG0780041640.01.T01:intron 35.0%
!! GGGTGATTTGGTATTTAAGA+AGG + Chr7:93352547-93352566 MsG0780041640.01.T01:intron 35.0%
!! GTATTGATTGGAGTGAAGAA+AGG - Chr7:93352738-93352757 None:intergenic 35.0%
!!! ATGGTCACCTTTTAGAATTC+AGG + Chr7:93351586-93351605 MsG0780041640.01.T01:CDS 35.0%
!!! TGTGGTTTTAGGGATGAATT+TGG - Chr7:93352792-93352811 None:intergenic 35.0%
AAAGAAGGTGGTGTAGCAAT+AGG + Chr7:93352615-93352634 MsG0780041640.01.T01:CDS 40.0%
AAATATCCAGTTGGGAGTGA+TGG - Chr7:93353041-93353060 None:intergenic 40.0%
ACACATTGCCACACAATATC+TGG - Chr7:93353780-93353799 None:intergenic 40.0%
ACTACCCTGCCAATAATTGT+TGG - Chr7:93353570-93353589 None:intergenic 40.0%
AGATCAGTGTAAGGTAACAC+TGG + Chr7:93351166-93351185 MsG0780041640.01.T01:CDS 40.0%
ATAAAACCATCACTCCCAAC+TGG + Chr7:93353032-93353051 MsG0780041640.01.T01:CDS 40.0%
ATAGTGATGCCTTCTTCAGA+TGG + Chr7:93353392-93353411 MsG0780041640.01.T01:CDS 40.0%
ATGTTGAAGGAGGAAGAACT+TGG + Chr7:93353440-93353459 MsG0780041640.01.T01:CDS 40.0%
ATTAAATCTGGGCCACACAA+AGG + Chr7:93353711-93353730 MsG0780041640.01.T01:three_prime_UTR 40.0%
ATTAGTTATTGGCATGGCAG+TGG + Chr7:93353645-93353664 MsG0780041640.01.T01:three_prime_UTR 40.0%
CACAAAAGGAAACTGAGGAA+GGG + Chr7:93353207-93353226 MsG0780041640.01.T01:CDS 40.0%
CACAACACATACAACACATC+TGG - Chr7:93353753-93353772 None:intergenic 40.0%
CACATTGCCACACAATATCT+GGG - Chr7:93353779-93353798 None:intergenic 40.0%
CCAACATGCATATCCCAAAA+AGG + Chr7:93351778-93351797 MsG0780041640.01.T01:intron 40.0%
CTATCATCATCTTCTGCTAC+TGG + Chr7:93351509-93351528 MsG0780041640.01.T01:CDS 40.0%
GAAACTGAGGAAGGGAAATT+TGG + Chr7:93353215-93353234 MsG0780041640.01.T01:CDS 40.0%
GAAGTTAGGTGTAATGATGC+TGG + Chr7:93351440-93351459 MsG0780041640.01.T01:CDS 40.0%
GACCTATTTAAGTCTCCTAC+CGG - Chr7:93353940-93353959 None:intergenic 40.0%
GATGTGTTGTATGTGTTGTG+TGG + Chr7:93353753-93353772 MsG0780041640.01.T01:three_prime_UTR 40.0%
GCGTTTCCAAAATATCCAGT+TGG - Chr7:93353050-93353069 None:intergenic 40.0%
GGAACACCTAAATGCATGTA+TGG + Chr7:93353236-93353255 MsG0780041640.01.T01:CDS 40.0%
GTCGATATACCCGACAATAA+CGG + Chr7:93351370-93351389 MsG0780041640.01.T01:CDS 40.0%
TAAAAGGTGACCATGTGCTA+GGG - Chr7:93351580-93351599 None:intergenic 40.0%
TATACACGAGAGGGAAGAAA+AGG - Chr7:93352167-93352186 None:intergenic 40.0%
TCACAAAAGGAAACTGAGGA+AGG + Chr7:93353206-93353225 MsG0780041640.01.T01:CDS 40.0%
TCAGACAATGATTCCCTCAA+TGG - Chr7:93351344-93351363 None:intergenic 40.0%
TCGATATACCCGACAATAAC+GGG + Chr7:93351371-93351390 MsG0780041640.01.T01:CDS 40.0%
TGAGAATTTGAAAGTGGCTG+TGG - Chr7:93352841-93352860 None:intergenic 40.0%
TGAGCCAACAATTATTGGCA+GGG + Chr7:93353563-93353582 MsG0780041640.01.T01:three_prime_UTR 40.0%
TGAGTCACAAAAGGAAACTG+AGG + Chr7:93353202-93353221 MsG0780041640.01.T01:CDS 40.0%
TGATTGGAGTGAAGAAAGGT+GGG - Chr7:93352734-93352753 None:intergenic 40.0%
TGCATATCCCAAAAAGGGAT+TGG + Chr7:93351784-93351803 MsG0780041640.01.T01:intron 40.0%
TGTGGCTATGTTTGATGAAG+AGG - Chr7:93352823-93352842 None:intergenic 40.0%
TTAAATAGGTCTCCTACGGT+AGG + Chr7:93353949-93353968 MsG0780041640.01.T01:three_prime_UTR 40.0%
TTCCAAGTTTCCTCCATTTG+AGG + Chr7:93352298-93352317 MsG0780041640.01.T01:intron 40.0%
TTCCGGTAGGAGACTTAAAT+AGG + Chr7:93353935-93353954 MsG0780041640.01.T01:three_prime_UTR 40.0%
TTGAGCCAACAATTATTGGC+AGG + Chr7:93353562-93353581 MsG0780041640.01.T01:three_prime_UTR 40.0%
TTGATTGGAGTGAAGAAAGG+TGG - Chr7:93352735-93352754 None:intergenic 40.0%
TTGTGTGGCCCAGATTTAAT+CGG - Chr7:93353711-93353730 None:intergenic 40.0%
TTTAAGTCTCCTACCGGAAA+CGG - Chr7:93353934-93353953 None:intergenic 40.0%
! AACTTTTGTCTGCATGGAAG+AGG + Chr7:93353268-93353287 MsG0780041640.01.T01:CDS 40.0%
! AAGAGGATCCAATCCCTTTT+TGG - Chr7:93351795-93351814 None:intergenic 40.0%
! ACTTCCTCTCAGCTCTATTT+TGG + Chr7:93352928-93352947 MsG0780041640.01.T01:CDS 40.0%
! AGAGGATCCAATCCCTTTTT+GGG - Chr7:93351794-93351813 None:intergenic 40.0%
! GGAATGTTGTTGGTTAGGAT+TGG - Chr7:93352771-93352790 None:intergenic 40.0%
! GTACTGGTAATTGGGAAGTT+AGG + Chr7:93351426-93351445 MsG0780041640.01.T01:CDS 40.0%
! TCACTCCCAACTGGATATTT+TGG + Chr7:93353041-93353060 MsG0780041640.01.T01:CDS 40.0%
! TGCTGGTGTTAGAGTCATAA+AGG + Chr7:93351457-93351476 MsG0780041640.01.T01:CDS 40.0%
!! AAGAAAGGTGGGTTGGAAAT+GGG - Chr7:93352723-93352742 None:intergenic 40.0%
!! AGGTAATGGTCTGTGGTTTT+AGG - Chr7:93352803-93352822 None:intergenic 40.0%
!! GGTAATGGTCTGTGGTTTTA+GGG - Chr7:93352802-93352821 None:intergenic 40.0%
!! GGTGAAGAGGTAGTATTGAT+TGG - Chr7:93352750-93352769 None:intergenic 40.0%
!!! CCTTTTTGGGATATGCATGT+TGG - Chr7:93351781-93351800 None:intergenic 40.0%
AAGTCAAATGGGGTGGCATT+AGG - Chr7:93352912-93352931 None:intergenic 45.0%
AATTAGTGGCGTGGGTGATT+TGG + Chr7:93352535-93352554 MsG0780041640.01.T01:intron 45.0%
ACACACTTGCACCAATCCAT+CGG - Chr7:93353858-93353877 None:intergenic 45.0%
ACTCGACAAGAAACATGAGC+TGG - Chr7:93353344-93353363 None:intergenic 45.0%
AGAGCTGAGAGGAAGTCAAA+TGG - Chr7:93352924-93352943 None:intergenic 45.0%
AGCTCATGTTTCTTGTCGAG+TGG + Chr7:93353343-93353362 MsG0780041640.01.T01:CDS 45.0%
AGCTGAGAGGAAGTCAAATG+GGG - Chr7:93352922-93352941 None:intergenic 45.0%
ATGAGGCACAGCTTATTGCT+TGG + Chr7:93351537-93351556 MsG0780041640.01.T01:CDS 45.0%
ATTGGATCCTCTTCCGAGAA+TGG + Chr7:93351802-93351821 MsG0780041640.01.T01:intron 45.0%
CACCTCAAATGGAGGAAACT+TGG - Chr7:93352303-93352322 None:intergenic 45.0%
CAGCCAGCAAGGATAATCTT+TGG - Chr7:93353503-93353522 None:intergenic 45.0%
CTAAAAGGTGACCATGTGCT+AGG - Chr7:93351581-93351600 None:intergenic 45.0%
CTCATGTTTCTTGTCGAGTG+GGG + Chr7:93353345-93353364 MsG0780041640.01.T01:CDS 45.0%
GAGCCAAAGATTATCCTTGC+TGG + Chr7:93353497-93353516 MsG0780041640.01.T01:CDS 45.0%
GAGCTGAGAGGAAGTCAAAT+GGG - Chr7:93352923-93352942 None:intergenic 45.0%
GAGTCCAAAATAGAGCTGAG+AGG - Chr7:93352935-93352954 None:intergenic 45.0%
GCTCATGTTTCTTGTCGAGT+GGG + Chr7:93353344-93353363 MsG0780041640.01.T01:CDS 45.0%
GTCAGAGACAGATCAGTGTA+AGG + Chr7:93351157-93351176 MsG0780041640.01.T01:CDS 45.0%
TCACTAGACCTCTCCATTCT+CGG - Chr7:93351818-93351837 None:intergenic 45.0%
TGAGGCACAGCTTATTGCTT+GGG + Chr7:93351538-93351557 MsG0780041640.01.T01:CDS 45.0%
TGATGCCTTCTTCAGATGGA+GGG + Chr7:93353396-93353415 MsG0780041640.01.T01:CDS 45.0%
TTCTGCTACTGGATCTGATG+AGG + Chr7:93351520-93351539 MsG0780041640.01.T01:CDS 45.0%
! AGATTATCCTTGCTGGCTGT+AGG + Chr7:93353504-93353523 MsG0780041640.01.T01:CDS 45.0%
! GATGAAGAGGTAATGGTCTG+TGG - Chr7:93352810-93352829 None:intergenic 45.0%
! GATTATCCTTGCTGGCTGTA+GGG + Chr7:93353505-93353524 MsG0780041640.01.T01:CDS 45.0%
! GTTGGTTAGGATTGGTGAAG+AGG - Chr7:93352763-93352782 None:intergenic 45.0%
!! AGAAAGGTGGGTTGGAAATG+GGG - Chr7:93352722-93352741 None:intergenic 45.0%
!! AGGATGGTGGTACTGGTAAT+TGG + Chr7:93351417-93351436 MsG0780041640.01.T01:CDS 45.0%
!! GAAGAAAGGTGGGTTGGAAA+TGG - Chr7:93352724-93352743 None:intergenic 45.0%
!! GGATGGTGGTACTGGTAATT+GGG + Chr7:93351418-93351437 MsG0780041640.01.T01:CDS 45.0%
!! TTAATATTAATATTAAAACT+AGG + Chr7:93351864-93351883 MsG0780041640.01.T01:intron 5.0%
AAATCTGGGCCACACAAAGG+TGG + Chr7:93353714-93353733 MsG0780041640.01.T01:three_prime_UTR 50.0%
ACACTTGCACCAATCCATCG+GGG - Chr7:93353856-93353875 None:intergenic 50.0%
ATCCTCTTCCGAGAATGGAG+AGG + Chr7:93351807-93351826 MsG0780041640.01.T01:intron 50.0%
CACAAAGGTGGTGTGTTGTG+TGG + Chr7:93353726-93353745 MsG0780041640.01.T01:three_prime_UTR 50.0%
CACAACACACCACCTTTGTG+TGG - Chr7:93353726-93353745 None:intergenic 50.0%
CACACTTGCACCAATCCATC+GGG - Chr7:93353857-93353876 None:intergenic 50.0%
GCAAACCCTCCATCTGAAGA+AGG - Chr7:93353404-93353423 None:intergenic 50.0%
GCACGAGATTAGATCCTCTC+AGG - Chr7:93352003-93352022 None:intergenic 50.0%
GTCAAGCAGACCAGTGAGTT+CGG + Chr7:93351208-93351227 MsG0780041640.01.T01:CDS 50.0%
GTCTACACCCGTCAACTTGT+GGG - Chr7:93351240-93351259 None:intergenic 50.0%
GTGATGCCTTCTTCAGATGG+AGG + Chr7:93353395-93353414 MsG0780041640.01.T01:CDS 50.0%
GTGTGGCAATGTGTGTTGTG+TGG + Chr7:93353786-93353805 MsG0780041640.01.T01:three_prime_UTR 50.0%
TCAAGCAGACCAGTGAGTTC+GGG + Chr7:93351209-93351228 MsG0780041640.01.T01:CDS 50.0%
TGAGAGGAAGTCAAATGGGG+TGG - Chr7:93352919-93352938 None:intergenic 50.0%
TGGAGTGAAGAAAGGTGGGT+TGG - Chr7:93352730-93352749 None:intergenic 50.0%
TGTGTGGCCCAGATATTGTG+TGG + Chr7:93353769-93353788 MsG0780041640.01.T01:three_prime_UTR 50.0%
TTCTTGTCGAGTGGGGAATG+TGG + Chr7:93353352-93353371 MsG0780041640.01.T01:CDS 50.0%
! AAGTTGACGGGTGTAGACCA+TGG + Chr7:93351242-93351261 MsG0780041640.01.T01:CDS 50.0%
! GGGTAAGACCCACAAGTTGA+CGG + Chr7:93351229-93351248 MsG0780041640.01.T01:CDS 50.0%
! GGTAAGACCCACAAGTTGAC+GGG + Chr7:93351230-93351249 MsG0780041640.01.T01:CDS 50.0%
! GTTTTACCCTACAGCCAGCA+AGG - Chr7:93353514-93353533 None:intergenic 50.0%
!! TATACCCGACAATAACGGGC+CGG + Chr7:93351375-93351394 MsG0780041640.01.T01:CDS 50.0%
!!! CTCATTTTTGGCGCCGTTTC+CGG + Chr7:93353918-93353937 MsG0780041640.01.T01:three_prime_UTR 50.0%
CACCATCCTCCTCCTTCTCT+CGG - Chr7:93351406-93351425 None:intergenic 55.0%
GACCATGTGCTAGGGTCATG+AGG - Chr7:93351572-93351591 None:intergenic 55.0%
GACCTCTCCATTCTCGGAAG+AGG - Chr7:93351812-93351831 None:intergenic 55.0%
GGTCTACACCCGTCAACTTG+TGG - Chr7:93351241-93351260 None:intergenic 55.0%
GTGGGGAATGTGGACGATGA+AGG + Chr7:93353362-93353381 MsG0780041640.01.T01:CDS 55.0%
TGCCTCATGACCCTAGCACA+TGG + Chr7:93351567-93351586 MsG0780041640.01.T01:CDS 55.0%
TGGGTCTTACCCGAACTCAC+TGG - Chr7:93351221-93351240 None:intergenic 55.0%
! AAGGAGGAGGATGGTGGTAC+TGG + Chr7:93351410-93351429 MsG0780041640.01.T01:CDS 55.0%
! AAGTGCTGTCCCCGATGGAT+TGG + Chr7:93353844-93353863 MsG0780041640.01.T01:three_prime_UTR 55.0%
!! TTTTTGGCGCCGTTTCCGGT+AGG + Chr7:93353922-93353941 MsG0780041640.01.T01:three_prime_UTR 55.0%
CCAACCGGCCCGTTATTGTC+GGG - Chr7:93351382-93351401 None:intergenic 60.0%
CCCAACCGGCCCGTTATTGT+CGG - Chr7:93351383-93351402 None:intergenic 60.0%
CGAGAGAAGGAGGAGGATGG+TGG + Chr7:93351404-93351423 MsG0780041640.01.T01:CDS 60.0%
GGTTGGAAATGGGGCTGTGG+CGG - Chr7:93352713-93352732 None:intergenic 60.0%
! CACACAAGTGCTGTCCCCGA+TGG + Chr7:93353839-93353858 MsG0780041640.01.T01:three_prime_UTR 60.0%
!! CCGACAATAACGGGCCGGTT+GGG + Chr7:93351380-93351399 MsG0780041640.01.T01:CDS 60.0%
!! GTGGGTTGGAAATGGGGCTG+TGG - Chr7:93352716-93352735 None:intergenic 60.0%
CCTCCTTCTCTCGGCCCAAC+CGG - Chr7:93351397-93351416 None:intergenic 65.0%
GGCCGAGAGAAGGAGGAGGA+TGG + Chr7:93351401-93351420 MsG0780041640.01.T01:CDS 65.0%
GGGGCTGTGGCGGTGAGTTT+GGG - Chr7:93352703-93352722 None:intergenic 65.0%
GTTGGGCCGAGAGAAGGAGG+AGG + Chr7:93351397-93351416 MsG0780041640.01.T01:CDS 65.0%
TGGGGCTGTGGCGGTGAGTT+TGG - Chr7:93352704-93352723 None:intergenic 65.0%
!! CCCGACAATAACGGGCCGGT+TGG + Chr7:93351379-93351398 MsG0780041640.01.T01:CDS 65.0%
CCGGTTGGGCCGAGAGAAGG+AGG + Chr7:93351394-93351413 MsG0780041640.01.T01:CDS 70.0%
GGGCCGGTTGGGCCGAGAGA+AGG + Chr7:93351391-93351410 MsG0780041640.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr7 gene 93351067 93353978 93351067 ID=MsG0780041640.01;Name=MsG0780041640.01
Chr7 mRNA 93351067 93353978 93351067 ID=MsG0780041640.01.T01;Parent=MsG0780041640.01;Name=MsG0780041640.01.T01;_AED=0.23;_eAED=0.23;_QI=88|1|1|1|1|1|2|440|462
Chr7 exon 93351067 93351607 93351067 ID=MsG0780041640.01.T01:exon:22084;Parent=MsG0780041640.01.T01
Chr7 exon 93352603 93353978 93352603 ID=MsG0780041640.01.T01:exon:22085;Parent=MsG0780041640.01.T01
Chr7 five_prime_UTR 93351067 93351154 93351067 ID=MsG0780041640.01.T01:five_prime_utr;Parent=MsG0780041640.01.T01
Chr7 CDS 93351155 93351607 93351155 ID=MsG0780041640.01.T01:cds;Parent=MsG0780041640.01.T01
Chr7 CDS 93352603 93353538 93352603 ID=MsG0780041640.01.T01:cds;Parent=MsG0780041640.01.T01
Chr7 three_prime_UTR 93353539 93353978 93353539 ID=MsG0780041640.01.T01:three_prime_utr;Parent=MsG0780041640.01.T01
Gene Sequence

>MsG0780041640.01.T01

ATGTCAGAGACAGATCAGTGTAAGGTAACACTGGATTCAAAACTAACGGTTGTGTCAAGCAGACCAGTGAGTTCGGGTAAGACCCACAAGTTGACGGGTGTAGACCATGGTATGAGTTATCATACACTGCATTTGATATACTATTACAAAAATGAAGAAAAATGGTTTAGGTCATTTGAATTGGATCCATTGAGGGAATCATTGTCTGAAGTTTTGTCGATATACCCGACAATAACGGGCCGGTTGGGCCGAGAGAAGGAGGAGGATGGTGGTACTGGTAATTGGGAAGTTAGGTGTAATGATGCTGGTGTTAGAGTCATAAAGGCTAATGTGGATAGTACTATTGATGAATGGCTATCATCATCTTCTGCTACTGGATCTGATGAGGCACAGCTTATTGCTTGGGATGATATGCCTCATGACCCTAGCACATGGTCACCTTTTAGAATTCAGATAAATAGCTTCAAAGAAGGTGGTGTAGCAATAGGACTAAGTTTTAGTCACATGCTTTCTGATTTAACTTTTGCATCATCATTCTTCAAATCATGGACCCAAACTCACCGCCACAGCCCCATTTCCAACCCACCTTTCTTCACTCCAATCAATACTACCTCTTCACCAATCCTAACCAACAACATTCCAAATTCATCCCTAAAACCACAGACCATTACCTCTTCATCAAACATAGCCACAGCCACTTTCAAATTCTCAAGTTCAATCATCAAACATTCCCTCTCCAAAATCCAAAACAAAAAATGTCCTAATGCCACCCCATTTGACTTCCTCTCAGCTCTATTTTGGACTCGTGTTGCTCACTTGAAACCCAAAGAAATTCATAATCAAACTCACTCTTTATCAATCTGCAGAGACTTCAGAAAGCTAATAAAACCATCACTCCCAACTGGATATTTTGGAAACGCGTTACATTTTTCAAATCTTTCACTAAAAATTGAAGAAATGGAGAATGGTGAATTAGGAAACGTAGCAAGTTTAATTCACACACACTTGAAAGGGGTTACAGATAAAGAAATAAAGTCTTCAATAGAATGGTTTGAGTCACAAAAGGAAACTGAGGAAGGGAAATTTGGAACACCTAAATGCATGTATGGGAAAGAGTTAACTTTTGTCTGCATGGAAGAGGAAGAGACAGCATCATTGTTGTATGAATCAATGTTTTGTGATAGTGAGAAACCAGCTCATGTTTCTTGTCGAGTGGGGAATGTGGACGATGAAGGTTTGATTATAGTGATGCCTTCTTCAGATGGAGGGTTTGCAAGAACTGTGATAGTAATGTTGAAGGAGGAAGAACTTGGTAAATTATGCAATGATCAAGAAATATTGAAGCTTGAGCCAAAGATTATCCTTGCTGGCTGTAGGGTAAAACGTTGA

Protein sequence

>MsG0780041640.01.T01

MSETDQCKVTLDSKLTVVSSRPVSSGKTHKLTGVDHGMSYHTLHLIYYYKNEEKWFRSFELDPLRESLSEVLSIYPTITGRLGREKEEDGGTGNWEVRCNDAGVRVIKANVDSTIDEWLSSSSATGSDEAQLIAWDDMPHDPSTWSPFRIQINSFKEGGVAIGLSFSHMLSDLTFASSFFKSWTQTHRHSPISNPPFFTPINTTSSPILTNNIPNSSLKPQTITSSSNIATATFKFSSSIIKHSLSKIQNKKCPNATPFDFLSALFWTRVAHLKPKEIHNQTHSLSICRDFRKLIKPSLPTGYFGNALHFSNLSLKIEEMENGELGNVASLIHTHLKGVTDKEIKSSIEWFESQKETEEGKFGTPKCMYGKELTFVCMEEEETASLLYESMFCDSEKPAHVSCRVGNVDDEGLIIVMPSSDGGFARTVIVMLKEEELGKLCNDQEILKLEPKIILAGCRVKR*