AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004248.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004248.01.T01 MTR_1g107330 80.882 408 6 4 1 339 1 405 0.0 637
MsG0180004248.01.T01 MTR_1g107330 83.271 269 5 3 1 232 1 266 4.11e-154 436
MsG0180004248.01.T01 MTR_5g084950 30.952 378 173 7 29 331 36 400 2.13e-62 204
MsG0180004248.01.T01 MTR_7g029365 30.000 380 183 6 29 333 41 412 2.56e-58 194
MsG0180004248.01.T01 MTR_3g081060 31.733 375 168 6 35 332 47 410 5.59e-58 193
MsG0180004248.01.T01 MTR_7g081050 30.769 377 167 8 35 332 43 404 1.53e-56 189
MsG0180004248.01.T01 MTR_3g081040 30.481 374 173 6 35 332 43 405 2.67e-56 188
MsG0180004248.01.T01 MTR_6g033965 31.635 373 167 7 35 332 44 403 2.31e-54 183
MsG0180004248.01.T01 MTR_7g081060 30.108 372 173 7 35 331 44 403 1.49e-51 176
MsG0180004248.01.T01 MTR_3g080980 29.759 373 176 8 35 332 43 404 4.38e-51 175
MsG0180004248.01.T01 MTR_6g023715 27.614 373 201 7 19 331 30 393 4.90e-50 172
MsG0180004248.01.T01 MTR_6g023740 27.361 413 211 8 1 331 7 412 5.33e-50 172
MsG0180004248.01.T01 MTR_6g033975 31.720 372 167 9 35 332 44 402 4.16e-49 169
MsG0180004248.01.T01 MTR_6g023750 27.019 359 178 8 50 331 4 355 2.41e-39 142
MsG0180004248.01.T01 MTR_7g029365 31.818 242 119 3 29 232 41 274 5.54e-36 132
MsG0180004248.01.T01 MTR_0595s0010 30.108 186 85 2 35 182 46 224 1.80e-25 104
MsG0180004248.01.T01 MTR_5g006650 35.385 130 48 2 89 182 63 192 6.63e-19 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004248.01.T01 AT2G15230 49.733 374 107 3 34 338 31 392 1.43e-122 358
MsG0180004248.01.T01 AT5G14180 29.032 403 196 9 6 331 26 415 4.55e-54 183
MsG0180004248.01.T01 AT5G14180 29.642 307 141 5 100 331 9 315 5.20e-41 146
MsG0180004248.01.T01 AT5G14180 29.508 305 140 5 102 331 2 306 9.66e-41 145
MsG0180004248.01.T01 AT5G14180 29.310 290 150 7 6 255 26 300 4.42e-34 127
MsG0180004248.01.T01 AT5G14180 29.588 267 135 6 6 232 26 279 4.66e-33 125

Find 111 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATTGGTGAAACAGAATT+TGG 0.182173 1:-75578416 MsG0180004248.01.T01:five_prime_UTR
CAGAGAGTTGGTTGTTGTTT+GGG 0.186644 1:+75578306 None:intergenic
TTGCCTTTGTTGATGGCTTA+TGG 0.191042 1:-75573176 MsG0180004248.01.T01:CDS
TTATATTACATTCATCTTAA+TGG 0.199327 1:+75572950 None:intergenic
CAGATCATTGCCTTTGTTGA+TGG 0.268391 1:-75573183 MsG0180004248.01.T01:CDS
ACCTTCTCCAAGTACGATTA+TGG 0.280197 1:-75573272 MsG0180004248.01.T01:CDS
ACAAAGGATGGTTTCTTGTT+AGG 0.282718 1:-75578122 MsG0180004248.01.T01:CDS
GCTTCTCCATGGCCTATTCA+TGG 0.284435 1:-75578009 MsG0180004248.01.T01:intron
ACAGAGAGTTGGTTGTTGTT+TGG 0.284882 1:+75578305 None:intergenic
TGCCTTTGTTGATGGCTTAT+GGG 0.286118 1:-75573175 MsG0180004248.01.T01:CDS
ATATGATCCAAGTATGAAAT+TGG 0.303318 1:+75575773 None:intergenic
TTCACCAATCCTATTATTGA+TGG 0.307707 1:+75578427 None:intergenic
CCTCTTATCATTCAATGGTT+TGG 0.307944 1:+75572772 None:intergenic
CCATCATCACCATCAATAAT+AGG 0.311385 1:-75578436 MsG0180004248.01.T01:five_prime_UTR
ATGCGGCTAAGGTCAAATTT+TGG 0.319645 1:+75573209 None:intergenic
CCAAACCATTGAATGATAAG+AGG 0.331508 1:-75572772 MsG0180004248.01.T01:three_prime_UTR
TTGGTTTGCTACTAATTGAT+TGG 0.341793 1:-75572829 MsG0180004248.01.T01:three_prime_UTR
TCTGTCTCCAATTTCATACT+TGG 0.350785 1:-75575780 MsG0180004248.01.T01:CDS
GGATTGGTGAAACAGAATTT+GGG 0.356943 1:-75578415 MsG0180004248.01.T01:five_prime_UTR
TTGAAGTTAAAACCATTGTT+TGG 0.360541 1:-75572806 MsG0180004248.01.T01:three_prime_UTR
ATCAGTTTCTTCAAGTCAAT+GGG 0.364667 1:-75573005 MsG0180004248.01.T01:CDS
CATCAGTTTCTTCAAGTCAA+TGG 0.364835 1:-75573006 MsG0180004248.01.T01:CDS
GGATCATATTAGTGCACCTT+TGG 0.375065 1:-75575759 MsG0180004248.01.T01:CDS
TGCACCTTTGGTACTAAGAA+TGG 0.380394 1:-75575747 MsG0180004248.01.T01:CDS
CACAGAAGTATTTACTGTCT+TGG 0.380650 1:-75572848 MsG0180004248.01.T01:three_prime_UTR
GCAAAGAAAATAGTATATAA+AGG 0.402286 1:+75572673 None:intergenic
ATCTTTATCAGAGAAGAATA+AGG 0.417364 1:-75577131 MsG0180004248.01.T01:intron
ACATAAGGAAATCAAGAGAT+TGG 0.417842 1:+75575457 None:intergenic
GACATGCTGTCATCCATTAC+AGG 0.418206 1:-75575413 MsG0180004248.01.T01:intron
GTGGTTTATCTTGAAAACTA+TGG 0.418535 1:-75573083 MsG0180004248.01.T01:CDS
AAATACACCAGAACAATCAT+TGG 0.421081 1:-75577230 MsG0180004248.01.T01:CDS
AAGCTTTCCATAATCGTACT+TGG 0.430219 1:+75573265 None:intergenic
AGTAAGTAGCAACCATGAAT+AGG 0.437845 1:+75577997 None:intergenic
GGCTTCATCCTCGCGGATCA+AGG 0.441928 1:-75577208 MsG0180004248.01.T01:CDS
GGAAAAGATGCACATTGATC+AGG 0.447013 1:-75575726 MsG0180004248.01.T01:intron
GGGTGCGCTGCCGCCGTCGA+AGG 0.448632 1:+75578329 None:intergenic
CATCAACAAAGGCAATGATC+TGG 0.449214 1:+75573184 None:intergenic
TTCATCAGCTGAATTTCAAA+AGG 0.450695 1:-75575600 MsG0180004248.01.T01:intron
AGTGATATATACTCACAGTA+TGG 0.454131 1:+75572645 None:intergenic
GTTTCCGAAGGATAAGAGTA+TGG 0.460626 1:+75578362 None:intergenic
ATGAAGCCCAATGATTGTTC+TGG 0.466690 1:+75577223 None:intergenic
GACTTGAAGAAACTGATGAT+AGG 0.472607 1:+75573011 None:intergenic
AGAGAGTTGGTTGTTGTTTG+GGG 0.478775 1:+75578307 None:intergenic
AGGCCATGGAGAAGCAGAAC+CGG 0.486022 1:+75578017 None:intergenic
GCCTTTGTTGATGGCTTATG+GGG 0.492263 1:-75573174 MsG0180004248.01.T01:CDS
ATGATCTGGGTATGCGGCTA+AGG 0.493826 1:+75573198 None:intergenic
ATCACCATCAATAATAGGAT+TGG 0.503513 1:-75578431 MsG0180004248.01.T01:five_prime_UTR
ATTGCCATACTCTTATCCTT+CGG 0.509142 1:-75578366 MsG0180004248.01.T01:CDS
CCTCCGGTTCTGCTTCTCCA+TGG 0.509579 1:-75578020 MsG0180004248.01.T01:CDS
ATATACTCACAGTATGGTAA+TGG 0.514581 1:+75572651 None:intergenic
TTACTTTCAGATTGAAACAA+AGG 0.517112 1:-75578138 MsG0180004248.01.T01:intron
TCAACCGGATATAGTAGAAA+AGG 0.520659 1:-75575819 MsG0180004248.01.T01:CDS
TGTTCAGATGATTGCTACAA+TGG 0.521008 1:-75575626 MsG0180004248.01.T01:intron
CCTATTATTGATGGTGATGA+TGG 0.523869 1:+75578436 None:intergenic
GTTCAGATGATTGCTACAAT+GGG 0.525033 1:-75575625 MsG0180004248.01.T01:intron
CTCTCAGTGAAGATGTAGAA+AGG 0.527326 1:-75572735 MsG0180004248.01.T01:three_prime_UTR
CAGTGAAGATGTAGAAAGGA+TGG 0.528452 1:-75572731 MsG0180004248.01.T01:three_prime_UTR
CTGATAAAGATTTATGTCCA+TGG 0.529374 1:+75577143 None:intergenic
TGAGAGACATGAACCTGTAA+TGG 0.530576 1:+75575400 None:intergenic
ACAACAACAACGAGGTCCTC+CGG 0.531545 1:-75578036 MsG0180004248.01.T01:CDS
TACTATATCCGGTTGAGTGA+AGG 0.532690 1:+75575826 None:intergenic
ATCAACAAAGGCAATGATCT+GGG 0.532780 1:+75573185 None:intergenic
AGAGTTGGTTGTTGTTTGGG+GGG 0.532934 1:+75578309 None:intergenic
ACTTGAAGAAACTGATGATA+GGG 0.535072 1:+75573012 None:intergenic
GCAGTTCCTTGAGTGTGTGC+TGG 0.538191 1:+75573120 None:intergenic
TCCATAATCGTACTTGGAGA+AGG 0.540057 1:+75573271 None:intergenic
AATACACCAGAACAATCATT+GGG 0.543527 1:-75577229 MsG0180004248.01.T01:CDS
TTACCCTTGCTCTGAATATG+TGG 0.550867 1:-75578259 MsG0180004248.01.T01:intron
ATGAGTTCATCACAGAGAGT+TGG 0.551768 1:+75578294 None:intergenic
GAGAGTTGGTTGTTGTTTGG+GGG 0.553474 1:+75578308 None:intergenic
TTTCAGATTGAAACAAAGGA+TGG 0.556157 1:-75578134 MsG0180004248.01.T01:intron
ATTACATTCATCTTAATGGA+AGG 0.556575 1:+75572954 None:intergenic
CAAACCATTGAATGATAAGA+GGG 0.556879 1:-75572771 MsG0180004248.01.T01:three_prime_UTR
ACTTAGACGAGTATCACATA+AGG 0.561077 1:+75575442 None:intergenic
GGAGTGCACCACTGATATGA+AGG 0.565592 1:-75572710 MsG0180004248.01.T01:three_prime_UTR
CAAGACAGTAAATACTTCTG+TGG 0.566209 1:+75572849 None:intergenic
TAGATTCATTAAACATACAG+TGG 0.569806 1:-75572920 MsG0180004248.01.T01:three_prime_UTR
TAAACCACCTCAGGTGTGGA+TGG 0.574032 1:+75573098 None:intergenic
CGTGGAACACGTTGGAGCCA+TGG 0.574865 1:-75577160 MsG0180004248.01.T01:CDS
GATGAACTCATTCTTCCCGC+TGG 0.577409 1:-75578282 MsG0180004248.01.T01:CDS
AGTAATAACCTTCATATCAG+TGG 0.583808 1:+75572702 None:intergenic
ACTTGGAGAAGGTACCTTTG+CGG 0.586271 1:+75573282 None:intergenic
AATACCACATATTCAGAGCA+AGG 0.587448 1:+75578255 None:intergenic
AAGATAAACCACCTCAGGTG+TGG 0.587694 1:+75573094 None:intergenic
TAGCAACCATGAATAGGCCA+TGG 0.587715 1:+75578003 None:intergenic
TCAGAGCAAGGGTAACCAGC+GGG 0.589366 1:+75578267 None:intergenic
GTATATATCACTAATTATTG+AGG 0.599896 1:-75572634 MsG0180004248.01.T01:three_prime_UTR
GATTGGTGAAACAGAATTTG+GGG 0.607741 1:-75578414 MsG0180004248.01.T01:five_prime_UTR
ACAATCAGGCAGGTGATGCA+TGG 0.608662 1:-75577258 MsG0180004248.01.T01:intron
AAGACAGTAAATACTTCTGT+GGG 0.608764 1:+75572850 None:intergenic
AACATCGCTCACTCCTTCGA+CGG 0.610140 1:-75578342 MsG0180004248.01.T01:CDS
ATCGCTCACTCCTTCGACGG+CGG 0.610445 1:-75578339 MsG0180004248.01.T01:CDS
TGATTTCCAGCACACACTCA+AGG 0.617911 1:-75573126 MsG0180004248.01.T01:CDS
ACTGCCATCCACACCTGAGG+TGG 0.635259 1:-75573102 MsG0180004248.01.T01:CDS
AAGGCAATGATCTGGGTATG+CGG 0.641163 1:+75573192 None:intergenic
ATCATTGGGCTTCATCCTCG+CGG 0.642517 1:-75577215 MsG0180004248.01.T01:CDS
TTACAGACACAACATCAAAG+TGG 0.645873 1:+75572890 None:intergenic
AGACACAACATCAAAGTGGA+CGG 0.649083 1:+75572894 None:intergenic
TGTTCTCCAGTGATCCGCAA+AGG 0.657082 1:-75573296 MsG0180004248.01.T01:intron
ATACCACATATTCAGAGCAA+GGG 0.659010 1:+75578256 None:intergenic
CCTTTGTTGATGGCTTATGG+GGG 0.663104 1:-75573173 MsG0180004248.01.T01:CDS
GGAGTGAGCGATGTTTCCGA+AGG 0.667016 1:+75578350 None:intergenic
GGAACTGCCATCCACACCTG+AGG 0.674091 1:-75573105 MsG0180004248.01.T01:CDS
ATTATTGATGGTGATGATGG+TGG 0.675186 1:+75578439 None:intergenic
TTCAGAGCAAGGGTAACCAG+CGG 0.686767 1:+75578266 None:intergenic
ATTGGTGAAACAGAATTTGG+GGG 0.689686 1:-75578413 MsG0180004248.01.T01:five_prime_UTR
CCATGGAGAAGCAGAACCGG+AGG 0.690082 1:+75578020 None:intergenic
TCAGTTTCTTCAAGTCAATG+GGG 0.699933 1:-75573004 MsG0180004248.01.T01:CDS
CATCAAAACCTTGATCCGCG+AGG 0.738834 1:+75577200 None:intergenic
GAAATGTGCGTGGAACACGT+TGG 0.739556 1:-75577168 MsG0180004248.01.T01:CDS
GTTTGGGTAGGAAATGTGCG+TGG 0.748523 1:-75577178 MsG0180004248.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTGATGTAAAAAATAT+AGG - Chr1:75575969-75575988 MsG0180004248.01.T01:intron 10.0%
!!! AGAAAAAAACAATTTTATTT+AGG - Chr1:75576356-75576375 MsG0180004248.01.T01:intron 10.0%
!!! ATATTTTTTACATCAATAAT+GGG + Chr1:75575969-75575988 None:intergenic 10.0%
!!! TATATTTTTTACATCAATAA+TGG + Chr1:75575970-75575989 None:intergenic 10.0%
!! AATGAAAAGTTATTTATGTT+TGG + Chr1:75573515-75573534 None:intergenic 15.0%
!! ATAAATTAATATATGTGTAG+CGG + Chr1:75576004-75576023 None:intergenic 15.0%
!! TCTATTTATAAATTGCTAAA+AGG - Chr1:75577606-75577625 MsG0180004248.01.T01:intron 15.0%
!! TTATATTACATTCATCTTAA+TGG + Chr1:75578116-75578135 None:intergenic 15.0%
!!! AATTAGTTTCAAACTTTAAA+AGG + Chr1:75573739-75573758 None:intergenic 15.0%
!!! TCTTTTCAATTGTAAAATAT+GGG - Chr1:75574030-75574049 MsG0180004248.01.T01:intron 15.0%
!!! TTCTTTTCAATTGTAAAATA+TGG - Chr1:75574029-75574048 MsG0180004248.01.T01:intron 15.0%
!!! TTTTATTTTGGTAAAAATGA+GGG + Chr1:75574958-75574977 None:intergenic 15.0%
!! AAAGATATGAATTAGAAAGA+AGG + Chr1:75572867-75572886 None:intergenic 20.0%
!! AAGATATGAATTAGAAAGAA+GGG + Chr1:75572866-75572885 None:intergenic 20.0%
!! ATTTAAAAGATATGCATTGT+CGG + Chr1:75577251-75577270 None:intergenic 20.0%
!! CATAGTGTATTAGTATAATA+AGG - Chr1:75573239-75573258 MsG0180004248.01.T01:CDS 20.0%
!! GATAGTAGAAGAATAAATAA+AGG + Chr1:75576131-75576150 None:intergenic 20.0%
!! GCAAAGAAAATAGTATATAA+AGG + Chr1:75578393-75578412 None:intergenic 20.0%
!! GTATATATCACTAATTATTG+AGG - Chr1:75578429-75578448 MsG0180004248.01.T01:five_prime_UTR 20.0%
!! TTAAAAATTCACTTTGTATG+CGG - Chr1:75573639-75573658 MsG0180004248.01.T01:intron 20.0%
!!! AAATTCATTTTGCAATTTTG+TGG + Chr1:75574106-75574125 None:intergenic 20.0%
!!! AATATTTGTACAACCATTTT+GGG - Chr1:75574210-75574229 MsG0180004248.01.T01:intron 20.0%
!!! ACAAGTTCTAAATGTATTAA+GGG - Chr1:75574422-75574441 MsG0180004248.01.T01:intron 20.0%
!!! ACTATATTCTGTCATTTTTT+AGG - Chr1:75573670-75573689 MsG0180004248.01.T01:intron 20.0%
!!! ATTATGAGAAGAGTATTATT+TGG + Chr1:75575799-75575818 None:intergenic 20.0%
!!! CTATATTCTGTCATTTTTTA+GGG - Chr1:75573671-75573690 MsG0180004248.01.T01:intron 20.0%
!!! CTCATTTTAATCTATAACTT+AGG - Chr1:75576507-75576526 MsG0180004248.01.T01:intron 20.0%
!!! GTTTTATTTTGGTAAAAATG+AGG + Chr1:75574959-75574978 None:intergenic 20.0%
!!! TAATATTTGTACAACCATTT+TGG - Chr1:75574209-75574228 MsG0180004248.01.T01:intron 20.0%
!!! TACAAGTTCTAAATGTATTA+AGG - Chr1:75574421-75574440 MsG0180004248.01.T01:intron 20.0%
!!! TATATTCTGTCATTTTTTAG+GGG - Chr1:75573672-75573691 MsG0180004248.01.T01:intron 20.0%
!!! TATATTTTTGAGTTTTGACA+CGG - Chr1:75574508-75574527 MsG0180004248.01.T01:intron 20.0%
!!! TCAATTTAGAATCATTTATG+AGG + Chr1:75573414-75573433 None:intergenic 20.0%
!!! TGAGAAATTTTGATCAATTA+GGG + Chr1:75576197-75576216 None:intergenic 20.0%
!!! TTGAGAAATTTTGATCAATT+AGG + Chr1:75576198-75576217 None:intergenic 20.0%
!!! TTTATTTTGGTAAAAATGAG+GGG + Chr1:75574957-75574976 None:intergenic 20.0%
!!! TTTTTAGCTGTATATTGATA+AGG - Chr1:75574810-75574829 MsG0180004248.01.T01:intron 20.0%
! AACTCAAAGTTATTTGTAGT+TGG - Chr1:75575095-75575114 MsG0180004248.01.T01:intron 25.0%
! AAGAAACCAATTAAAGATGA+TGG + Chr1:75576747-75576766 None:intergenic 25.0%
! AAGATGCAGTTATTAAAATG+GGG - Chr1:75577174-75577193 MsG0180004248.01.T01:CDS 25.0%
! ACATTATCAAACATGATCAA+AGG + Chr1:75576910-75576929 None:intergenic 25.0%
! ACGATATAGAATAAACAAAC+TGG + Chr1:75577070-75577089 None:intergenic 25.0%
! ACTCAAAGTTATTTGTAGTT+GGG - Chr1:75575096-75575115 MsG0180004248.01.T01:intron 25.0%
! ATATGATCCAAGTATGAAAT+TGG + Chr1:75575293-75575312 None:intergenic 25.0%
! ATATGTAACTCTTGTATCTA+CGG - Chr1:75576221-75576240 MsG0180004248.01.T01:intron 25.0%
! ATCAACATATGCAAAAGAAA+AGG + Chr1:75575518-75575537 None:intergenic 25.0%
! ATCCTTACAAATATGTCTTT+AGG - Chr1:75577269-75577288 MsG0180004248.01.T01:intron 25.0%
! ATCTTTATCAGAGAAGAATA+AGG - Chr1:75573932-75573951 MsG0180004248.01.T01:intron 25.0%
! ATTACATTCATCTTAATGGA+AGG + Chr1:75578112-75578131 None:intergenic 25.0%
! ATTAGAAAGAAGGGAAATAT+TGG + Chr1:75572857-75572876 None:intergenic 25.0%
! CAAATAAGAAATGCTTCATT+CGG - Chr1:75574740-75574759 MsG0180004248.01.T01:intron 25.0%
! CAAGATGCAGTTATTAAAAT+GGG - Chr1:75577173-75577192 MsG0180004248.01.T01:CDS 25.0%
! CAGTGTAAAACTAATTACTA+AGG + Chr1:75577107-75577126 None:intergenic 25.0%
! CTTAAAAATCTGATAGAGTA+TGG - Chr1:75577818-75577837 MsG0180004248.01.T01:intron 25.0%
! GGGTTTAACAATAAATTCAA+TGG + Chr1:75573475-75573494 None:intergenic 25.0%
! GTTATAGATTAAAATGAGAG+AGG + Chr1:75576505-75576524 None:intergenic 25.0%
! TAAATAAAGGTCAGATACTA+TGG + Chr1:75576118-75576137 None:intergenic 25.0%
! TAGATTCATTAAACATACAG+TGG - Chr1:75578143-75578162 MsG0180004248.01.T01:intron 25.0%
! TCAAGATGCAGTTATTAAAA+TGG - Chr1:75577172-75577191 MsG0180004248.01.T01:CDS 25.0%
! TGGATATATTCATGTAAACA+GGG + Chr1:75573495-75573514 None:intergenic 25.0%
! TGTAAAACTAATTACTAAGG+TGG + Chr1:75577104-75577123 None:intergenic 25.0%
! TTACTTTCAGATTGAAACAA+AGG - Chr1:75572925-75572944 MsG0180004248.01.T01:three_prime_UTR 25.0%
! TTGAAGTTAAAACCATTGTT+TGG - Chr1:75578257-75578276 MsG0180004248.01.T01:intron 25.0%
! TTGGATATATTCATGTAAAC+AGG + Chr1:75573496-75573515 None:intergenic 25.0%
! TTTCCTATAATGTCATTACT+AGG - Chr1:75577313-75577332 MsG0180004248.01.T01:intron 25.0%
!!! AAACATTTTTTTCTCTCTCT+TGG + Chr1:75576256-75576275 None:intergenic 25.0%
!!! AACAATTTTATTTAGGACAC+TGG - Chr1:75576363-75576382 MsG0180004248.01.T01:intron 25.0%
!!! AACCTTTTTTTCTCTTCTTT+TGG + Chr1:75574347-75574366 None:intergenic 25.0%
!!! ACCTTTTTTTCTCTTCTTTT+GGG + Chr1:75574346-75574365 None:intergenic 25.0%
!!! AGAAATTTTGATCAATTAGG+GGG + Chr1:75576195-75576214 None:intergenic 25.0%
!!! CATACTCATCAGTTTTATTT+TGG + Chr1:75574970-75574989 None:intergenic 25.0%
!!! GAATCTATTTTTCCAAACAA+TGG + Chr1:75578272-75578291 None:intergenic 25.0%
!!! GAGAAATTTTGATCAATTAG+GGG + Chr1:75576196-75576215 None:intergenic 25.0%
!!! TGTTTCTAAAATGTAAGCTA+TGG + Chr1:75575180-75575199 None:intergenic 25.0%
!!! TTTCTGTTTTTCTTGCTAAT+TGG - Chr1:75572884-75572903 MsG0180004248.01.T01:three_prime_UTR 25.0%
!!! TTTTACTGTGTTATTTGCTT+TGG - Chr1:75577652-75577671 MsG0180004248.01.T01:intron 25.0%
AAAACAATAGAGAGAGAAAG+AGG + Chr1:75574320-75574339 None:intergenic 30.0%
AAACAATAGAGAGAGAAAGA+GGG + Chr1:75574319-75574338 None:intergenic 30.0%
AAACATCTTATCCATCTTAG+GGG - Chr1:75575195-75575214 MsG0180004248.01.T01:intron 30.0%
AAATACACCAGAACAATCAT+TGG - Chr1:75573833-75573852 MsG0180004248.01.T01:intron 30.0%
AAGACAGTAAATACTTCTGT+GGG + Chr1:75578216-75578235 None:intergenic 30.0%
AAGAGAAAAAGAAACTACAG+CGG + Chr1:75577372-75577391 None:intergenic 30.0%
AATACACCAGAACAATCATT+GGG - Chr1:75573834-75573853 MsG0180004248.01.T01:intron 30.0%
ACATAAGGAAATCAAGAGAT+TGG + Chr1:75575609-75575628 None:intergenic 30.0%
ACCTCATTTCTATTAGCAAA+TGG + Chr1:75574457-75574476 None:intergenic 30.0%
ACTTATGATGATCTCGAAAA+GGG - Chr1:75574704-75574723 MsG0180004248.01.T01:intron 30.0%
ACTTGAAGAAACTGATGATA+GGG + Chr1:75578054-75578073 None:intergenic 30.0%
AGAAACATCTTATCCATCTT+AGG - Chr1:75575193-75575212 MsG0180004248.01.T01:intron 30.0%
AGTAATAACCTTCATATCAG+TGG + Chr1:75578364-75578383 None:intergenic 30.0%
AGTACTTCTTATAAGATCAG+AGG + Chr1:75574687-75574706 None:intergenic 30.0%
AGTGATATATACTCACAGTA+TGG + Chr1:75578421-75578440 None:intergenic 30.0%
ATAGAGTTTAAAAGACAGTC+TGG + Chr1:75577591-75577610 None:intergenic 30.0%
ATATACTCACAGTATGGTAA+TGG + Chr1:75578415-75578434 None:intergenic 30.0%
ATCACCATCAATAATAGGAT+TGG - Chr1:75572632-75572651 MsG0180004248.01.T01:three_prime_UTR 30.0%
ATCAGTTTCTTCAAGTCAAT+GGG - Chr1:75578058-75578077 MsG0180004248.01.T01:CDS 30.0%
ATCATACACAAAATGAAAGC+TGG + Chr1:75577682-75577701 None:intergenic 30.0%
ATGTGAAAAGGATGATTTAC+AGG + Chr1:75575143-75575162 None:intergenic 30.0%
CAAAACTCTGCAAATATTAC+TGG + Chr1:75573600-75573619 None:intergenic 30.0%
CAAAAGAAAAGGAGAAAAAC+AGG + Chr1:75575507-75575526 None:intergenic 30.0%
CAAACCATTGAATGATAAGA+GGG - Chr1:75578292-75578311 MsG0180004248.01.T01:CDS 30.0%
CAATGAGTTCTATAACATGA+AGG + Chr1:75573975-75573994 None:intergenic 30.0%
CATCATCAACCAGTAATTAA+TGG + Chr1:75577505-75577524 None:intergenic 30.0%
CATGTTCCATCATCTTTAAT+TGG - Chr1:75576738-75576757 MsG0180004248.01.T01:intron 30.0%
CTCCTAAAGACATATTTGTA+AGG + Chr1:75577274-75577293 None:intergenic 30.0%
CTGATAAAGATTTATGTCCA+TGG + Chr1:75573923-75573942 None:intergenic 30.0%
GAAACATCTTATCCATCTTA+GGG - Chr1:75575194-75575213 MsG0180004248.01.T01:intron 30.0%
GATCAAAGGTAAATTTGTGA+TGG + Chr1:75576896-75576915 None:intergenic 30.0%
GTACCTAGTAATGACATTAT+AGG + Chr1:75577319-75577338 None:intergenic 30.0%
GTGGTTTATCTTGAAAACTA+TGG - Chr1:75577980-75577999 MsG0180004248.01.T01:intron 30.0%
TAACTGCATCTTGAAATTGA+CGG + Chr1:75577166-75577185 None:intergenic 30.0%
TACTTATGATGATCTCGAAA+AGG - Chr1:75574703-75574722 MsG0180004248.01.T01:intron 30.0%
TAGAACCAAACATACACTAA+AGG + Chr1:75573319-75573338 None:intergenic 30.0%
TAGATTAAAATGAGAGAGGA+AGG + Chr1:75576501-75576520 None:intergenic 30.0%
TAGCAATTGCCATTAATTAC+TGG - Chr1:75577493-75577512 MsG0180004248.01.T01:intron 30.0%
TATGTATGTCTGTGTTTAGA+AGG - Chr1:75575697-75575716 MsG0180004248.01.T01:intron 30.0%
TCAACAACTAAACTTTCATG+TGG - Chr1:75574159-75574178 MsG0180004248.01.T01:intron 30.0%
TCCCAAAAGAAGAGAAAAAA+AGG - Chr1:75574342-75574361 MsG0180004248.01.T01:intron 30.0%
TTCACCAATCCTATTATTGA+TGG + Chr1:75572639-75572658 None:intergenic 30.0%
TTCATCAGCTGAATTTCAAA+AGG - Chr1:75575463-75575482 MsG0180004248.01.T01:CDS 30.0%
TTGAACAGAATGAACAAAGA+AGG - Chr1:75574631-75574650 MsG0180004248.01.T01:intron 30.0%
TTTCAGATTGAAACAAAGGA+TGG - Chr1:75572929-75572948 MsG0180004248.01.T01:three_prime_UTR 30.0%
! AAGGTTTTTGAATCATGCTT+AGG + Chr1:75576482-75576501 None:intergenic 30.0%
! ACTTTTCTATACATAGCCAA+GGG - Chr1:75574076-75574095 MsG0180004248.01.T01:intron 30.0%
! AGCTTTCATTTTGTGTATGA+TGG - Chr1:75577681-75577700 MsG0180004248.01.T01:intron 30.0%
! ATATCTTGCTACTTCAATGT+GGG - Chr1:75573267-75573286 MsG0180004248.01.T01:CDS 30.0%
! CAGTAATATTTGCAGAGTTT+TGG - Chr1:75573598-75573617 MsG0180004248.01.T01:intron 30.0%
! CTAAAAGGACATTTGAAGTT+TGG - Chr1:75577621-75577640 MsG0180004248.01.T01:intron 30.0%
! CTATAACTTAGGAATCCTTT+TGG - Chr1:75576518-75576537 MsG0180004248.01.T01:intron 30.0%
! GCTTTAAATTGGACTTTGTA+GGG - Chr1:75576955-75576974 MsG0180004248.01.T01:intron 30.0%
! TACAAATATGTCTTTAGGAG+AGG - Chr1:75577274-75577293 MsG0180004248.01.T01:intron 30.0%
! TACTTTTCTATACATAGCCA+AGG - Chr1:75574075-75574094 MsG0180004248.01.T01:intron 30.0%
! TCAACCTTTTCTACTATATC+CGG + Chr1:75575251-75575270 None:intergenic 30.0%
! TTAACTCATTTTCAGCGATT+GGG - Chr1:75575580-75575599 MsG0180004248.01.T01:intron 30.0%
! TTATGCCATTTGATACAATC+AGG - Chr1:75573791-75573810 MsG0180004248.01.T01:intron 30.0%
! TTTTCCATTCTTAGTACCAA+AGG + Chr1:75575323-75575342 None:intergenic 30.0%
! TTTTCCCTCTTATCATTCAA+TGG + Chr1:75578299-75578318 None:intergenic 30.0%
!! AACTTGTTGAAAACATTCAG+AGG + Chr1:75574536-75574555 None:intergenic 30.0%
!! AGCTATTTTGTGACAACTTT+TGG + Chr1:75574373-75574392 None:intergenic 30.0%
!! AGCTTTAAATTGGACTTTGT+AGG - Chr1:75576954-75576973 MsG0180004248.01.T01:intron 30.0%
!! CAATTAAAGATGATGGAACA+TGG + Chr1:75576740-75576759 None:intergenic 30.0%
!! CTTGCTATTATTCTTGTCAA+TGG - Chr1:75577722-75577741 MsG0180004248.01.T01:intron 30.0%
!! GAATTTGTTATTGACCTGTT+TGG - Chr1:75573374-75573393 MsG0180004248.01.T01:intron 30.0%
!! GAGAAGAGTATTATTTGGAT+TGG + Chr1:75575794-75575813 None:intergenic 30.0%
!! GATATGAAGCAGCTTTAAAT+TGG - Chr1:75576944-75576963 MsG0180004248.01.T01:intron 30.0%
!! GCTATTTTGTGACAACTTTT+GGG + Chr1:75574372-75574391 None:intergenic 30.0%
!! TTGATGATGAATCAGCATAT+GGG - Chr1:75577516-75577535 MsG0180004248.01.T01:intron 30.0%
!! TTGGTTTGCTACTAATTGAT+TGG - Chr1:75578234-75578253 MsG0180004248.01.T01:intron 30.0%
!! TTTTCAGCACTAGTTTGAAA+AGG - Chr1:75574608-75574627 MsG0180004248.01.T01:intron 30.0%
!!! TGTATGTTTGGTTCTACTTT+TGG - Chr1:75573323-75573342 MsG0180004248.01.T01:intron 30.0%
AACAATAGAGAGAGAAAGAG+GGG + Chr1:75574318-75574337 None:intergenic 35.0%
AAGCTTTCCATAATCGTACT+TGG + Chr1:75577801-75577820 None:intergenic 35.0%
AATACCACATATTCAGAGCA+AGG + Chr1:75572811-75572830 None:intergenic 35.0%
AATGCTGGTAGAATGTGAAA+AGG + Chr1:75575155-75575174 None:intergenic 35.0%
ACAAAGGATGGTTTCTTGTT+AGG - Chr1:75572941-75572960 MsG0180004248.01.T01:three_prime_UTR 35.0%
ACAGTCTGGTGGAAATAATT+AGG + Chr1:75577577-75577596 None:intergenic 35.0%
ACTTAGACGAGTATCACATA+AGG + Chr1:75575624-75575643 None:intergenic 35.0%
AGCTTCCTTTAGTGTATGTT+TGG - Chr1:75573311-75573330 MsG0180004248.01.T01:intron 35.0%
AGTAAGTAGCAACCATGAAT+AGG + Chr1:75573069-75573088 None:intergenic 35.0%
ATACCACATATTCAGAGCAA+GGG + Chr1:75572810-75572829 None:intergenic 35.0%
ATCAACAAAGGCAATGATCT+GGG + Chr1:75577881-75577900 None:intergenic 35.0%
ATGTAAGCTATGGAAAATGC+TGG + Chr1:75575170-75575189 None:intergenic 35.0%
ATTGACCTGTTTGGATGTAT+TGG - Chr1:75573383-75573402 MsG0180004248.01.T01:intron 35.0%
ATTGCCATACTCTTATCCTT+CGG - Chr1:75572697-75572716 MsG0180004248.01.T01:three_prime_UTR 35.0%
ATTGGTGAAACAGAATTTGG+GGG - Chr1:75572650-75572669 MsG0180004248.01.T01:three_prime_UTR 35.0%
ATTGTTTGATCTTGAGCAGT+TGG - Chr1:75574775-75574794 MsG0180004248.01.T01:intron 35.0%
CAAAACCAATACATCCAAAC+AGG + Chr1:75573391-75573410 None:intergenic 35.0%
CAAGACAGTAAATACTTCTG+TGG + Chr1:75578217-75578236 None:intergenic 35.0%
CATCAGTTTCTTCAAGTCAA+TGG - Chr1:75578057-75578076 MsG0180004248.01.T01:CDS 35.0%
CCAAACCATTGAATGATAAG+AGG - Chr1:75578291-75578310 MsG0180004248.01.T01:CDS 35.0%
CCATCATCACCATCAATAAT+AGG - Chr1:75572627-75572646 MsG0180004248.01.T01:three_prime_UTR 35.0%
CCTCTTATCATTCAATGGTT+TGG + Chr1:75578294-75578313 None:intergenic 35.0%
GAAAAATAGAGACCTCTCAT+TGG + Chr1:75577134-75577153 None:intergenic 35.0%
GAAATAATTGTCCCCTAAGA+TGG + Chr1:75575209-75575228 None:intergenic 35.0%
GAATAAACAAACTGGTACCA+AGG + Chr1:75577062-75577081 None:intergenic 35.0%
GACTTGAAGAAACTGATGAT+AGG + Chr1:75578055-75578074 None:intergenic 35.0%
GATTGGTGAAACAGAATTTG+GGG - Chr1:75572649-75572668 MsG0180004248.01.T01:three_prime_UTR 35.0%
GGGAAGTAATAATGTTCAGT+GGG - Chr1:75576989-75577008 MsG0180004248.01.T01:intron 35.0%
GTTCAGATGATTGCTACAAT+GGG - Chr1:75575438-75575457 MsG0180004248.01.T01:CDS 35.0%
TAAATTGGACTTTGTAGGGA+CGG - Chr1:75576959-75576978 MsG0180004248.01.T01:intron 35.0%
TAATATATGTGTAGCGGTGA+TGG + Chr1:75575998-75576017 None:intergenic 35.0%
TCAACCGGATATAGTAGAAA+AGG - Chr1:75575244-75575263 MsG0180004248.01.T01:intron 35.0%
TCAGTTTCTTCAAGTCAATG+GGG - Chr1:75578059-75578078 MsG0180004248.01.T01:CDS 35.0%
TCTCAAAAGTTGTCCCAAAA+TGG + Chr1:75574226-75574245 None:intergenic 35.0%
TCTGTCTCCAATTTCATACT+TGG - Chr1:75575283-75575302 MsG0180004248.01.T01:intron 35.0%
TGACTAGAATTCTTCGACAA+TGG + Chr1:75574865-75574884 None:intergenic 35.0%
TGGCATTCATGAAAGACAAA+AGG + Chr1:75575823-75575842 None:intergenic 35.0%
TGTTCAGATGATTGCTACAA+TGG - Chr1:75575437-75575456 MsG0180004248.01.T01:CDS 35.0%
TTACAGACACAACATCAAAG+TGG + Chr1:75578176-75578195 None:intergenic 35.0%
TTGAAATTGACGGAATGACA+TGG + Chr1:75577156-75577175 None:intergenic 35.0%
TTTGCTAAGCTGGAAATACA+TGG + Chr1:75575541-75575560 None:intergenic 35.0%
! AAATATGTCTTTAGGAGAGG+AGG - Chr1:75577277-75577296 MsG0180004248.01.T01:intron 35.0%
! AGGATTGGTGAAACAGAATT+TGG - Chr1:75572647-75572666 MsG0180004248.01.T01:three_prime_UTR 35.0%
! CTTAACTCATTTTCAGCGAT+TGG - Chr1:75575579-75575598 MsG0180004248.01.T01:intron 35.0%
! GATATCTTGCTACTTCAATG+TGG - Chr1:75573266-75573285 MsG0180004248.01.T01:CDS 35.0%
! GCCATTTGCTAATAGAAATG+AGG - Chr1:75574453-75574472 MsG0180004248.01.T01:intron 35.0%
! GCTGTAGTTTCTTTTTCTCT+TGG - Chr1:75577371-75577390 MsG0180004248.01.T01:intron 35.0%
! GGATTGGTGAAACAGAATTT+GGG - Chr1:75572648-75572667 MsG0180004248.01.T01:three_prime_UTR 35.0%
! TACATAATTGATTCTCGAGG+TGG - Chr1:75573350-75573369 MsG0180004248.01.T01:intron 35.0%
! TCCAGCTTAGCAAATTTTCA+CGG - Chr1:75575547-75575566 MsG0180004248.01.T01:intron 35.0%
! TGACTTTTCTGACTATTCAC+TGG - Chr1:75576785-75576804 MsG0180004248.01.T01:intron 35.0%
! TGTCCTTTTGTAGCACTTTT+GGG - Chr1:75575004-75575023 MsG0180004248.01.T01:intron 35.0%
! TTGTCCTTTTGTAGCACTTT+TGG - Chr1:75575003-75575022 MsG0180004248.01.T01:intron 35.0%
!! AATCCCAAAAGTGCTACAAA+AGG + Chr1:75575010-75575029 None:intergenic 35.0%
!! CACAGAAGTATTTACTGTCT+TGG - Chr1:75578215-75578234 MsG0180004248.01.T01:intron 35.0%
!! CCTATTATTGATGGTGATGA+TGG + Chr1:75572630-75572649 None:intergenic 35.0%
!! GAAAAGGTGGTTCAAGTTTT+TGG + Chr1:75576706-75576725 None:intergenic 35.0%
!! GGATCAAGGTTTTGATGTTT+GGG - Chr1:75573869-75573888 MsG0180004248.01.T01:intron 35.0%
!! GTTGATGATGAATCAGCATA+TGG - Chr1:75577515-75577534 MsG0180004248.01.T01:intron 35.0%
!! GTTTTGGACAGTGTTTGAAT+TGG - Chr1:75573614-75573633 MsG0180004248.01.T01:intron 35.0%
!! TTCAAGTTTTTGGAGGATGA+TGG + Chr1:75576696-75576715 None:intergenic 35.0%
!! TTTTCAAGATAAACCACCTC+AGG + Chr1:75577977-75577996 None:intergenic 35.0%
!!! ATGTTTGGTTCTACTTTTGG+AGG - Chr1:75573326-75573345 MsG0180004248.01.T01:intron 35.0%
!!! TGTTTGGTTCTACTTTTGGA+GGG - Chr1:75573327-75573346 MsG0180004248.01.T01:intron 35.0%
!!! TTTTGTAGCACTTTTGGGAT+TGG - Chr1:75575009-75575028 MsG0180004248.01.T01:intron 35.0%
AAACAGGACAGAACGAAAAC+TGG + Chr1:75575491-75575510 None:intergenic 40.0%
AAATTGGACTTTGTAGGGAC+GGG - Chr1:75576960-75576979 MsG0180004248.01.T01:intron 40.0%
ACCTGCCTGATTGTATCAAA+TGG + Chr1:75573799-75573818 None:intergenic 40.0%
ACCTTCTCCAAGTACGATTA+TGG - Chr1:75577791-75577810 MsG0180004248.01.T01:intron 40.0%
AGACACAACATCAAAGTGGA+CGG + Chr1:75578172-75578191 None:intergenic 40.0%
AGCCAGCAAAGTAATTGCAA+TGG + Chr1:75575843-75575862 None:intergenic 40.0%
ATACACGCAGAATGACCAAA+AGG + Chr1:75576536-75576555 None:intergenic 40.0%
ATGAAGCACATACACACACA+TGG + Chr1:75573222-75573241 None:intergenic 40.0%
ATGAAGCCCAATGATTGTTC+TGG + Chr1:75573843-75573862 None:intergenic 40.0%
ATGAGTTCATCACAGAGAGT+TGG + Chr1:75572772-75572791 None:intergenic 40.0%
ATGATGAATCAGCATATGGG+TGG - Chr1:75577519-75577538 MsG0180004248.01.T01:intron 40.0%
ATGGAACATGGAACATACTC+TGG + Chr1:75576728-75576747 None:intergenic 40.0%
ATGGCTCGTATGAGTGTTAT+AGG - Chr1:75576301-75576320 MsG0180004248.01.T01:intron 40.0%
ATTTGTAGTTGGGCATTCAC+AGG - Chr1:75575106-75575125 MsG0180004248.01.T01:intron 40.0%
CAGATCATTGCCTTTGTTGA+TGG - Chr1:75577880-75577899 MsG0180004248.01.T01:intron 40.0%
CAGTGAAGATGTAGAAAGGA+TGG - Chr1:75578332-75578351 MsG0180004248.01.T01:CDS 40.0%
CATCAACAAAGGCAATGATC+TGG + Chr1:75577882-75577901 None:intergenic 40.0%
CGTATGAGTGTTATAGGTGT+CGG - Chr1:75576307-75576326 MsG0180004248.01.T01:intron 40.0%
CTCTCAGTGAAGATGTAGAA+AGG - Chr1:75578328-75578347 MsG0180004248.01.T01:CDS 40.0%
CTTAGGCAAGTTATGAAGCA+CGG + Chr1:75576465-75576484 None:intergenic 40.0%
CTTCGTACAAATATGCTCCT+TGG + Chr1:75577460-75577479 None:intergenic 40.0%
GAGTTTAAAAGACAGTCTGG+TGG + Chr1:75577588-75577607 None:intergenic 40.0%
GCTCAAAAACAACAACAACG+AGG - Chr1:75573019-75573038 MsG0180004248.01.T01:CDS 40.0%
GGAAAAGATGCACATTGATC+AGG - Chr1:75575337-75575356 MsG0180004248.01.T01:intron 40.0%
GGATCATATTAGTGCACCTT+TGG - Chr1:75575304-75575323 MsG0180004248.01.T01:intron 40.0%
GGGGAAGTAATAATGTTCAG+TGG - Chr1:75576988-75577007 MsG0180004248.01.T01:intron 40.0%
GTTTCCGAAGGATAAGAGTA+TGG + Chr1:75572704-75572723 None:intergenic 40.0%
TACTATATCCGGTTGAGTGA+AGG + Chr1:75575240-75575259 None:intergenic 40.0%
TCCATAATCGTACTTGGAGA+AGG + Chr1:75577795-75577814 None:intergenic 40.0%
TCTCTTCTACATGACAACCT+TGG - Chr1:75577042-75577061 MsG0180004248.01.T01:intron 40.0%
TGAAACAGAATTTGGGGGAT+GGG - Chr1:75572655-75572674 MsG0180004248.01.T01:three_prime_UTR 40.0%
TGACATGCTTTATCTTGCCA+AGG - Chr1:75577440-75577459 MsG0180004248.01.T01:intron 40.0%
TGAGAGACATGAACCTGTAA+TGG + Chr1:75575666-75575685 None:intergenic 40.0%
TGCACCTTTGGTACTAAGAA+TGG - Chr1:75575316-75575335 MsG0180004248.01.T01:intron 40.0%
TGCCATTGCAATTACTTTGC+TGG - Chr1:75575838-75575857 MsG0180004248.01.T01:CDS 40.0%
TTACACTGACATCCAATGAG+AGG - Chr1:75577119-75577138 MsG0180004248.01.T01:intron 40.0%
TTTGTCTGAGTTGTCTGACA+TGG - Chr1:75576282-75576301 MsG0180004248.01.T01:intron 40.0%
! ACAGAGAGTTGGTTGTTGTT+TGG + Chr1:75572761-75572780 None:intergenic 40.0%
! ACGTCTTCTATCAGAAGTGT+CGG + Chr1:75573148-75573167 None:intergenic 40.0%
! ATACGATGTGACTTGTGCTT+TGG - Chr1:75574931-75574950 MsG0180004248.01.T01:intron 40.0%
! ATGCGGCTAAGGTCAAATTT+TGG + Chr1:75577857-75577876 None:intergenic 40.0%
! CAGCTTAGCAAATTTTCACG+GGG - Chr1:75575549-75575568 MsG0180004248.01.T01:intron 40.0%
! CATGGAACATACTCTGGAAA+AGG + Chr1:75576722-75576741 None:intergenic 40.0%
! CCAGCTTAGCAAATTTTCAC+GGG - Chr1:75575548-75575567 MsG0180004248.01.T01:intron 40.0%
! GGGTACATAATTGATTCTCG+AGG - Chr1:75573347-75573366 MsG0180004248.01.T01:intron 40.0%
! TTACCCTTGCTCTGAATATG+TGG - Chr1:75572804-75572823 MsG0180004248.01.T01:three_prime_UTR 40.0%
!! AAGGTGGTTCAAGTTTTTGG+AGG + Chr1:75576703-75576722 None:intergenic 40.0%
!! AGAGAGTTGGTTGTTGTTTG+GGG + Chr1:75572759-75572778 None:intergenic 40.0%
!! CAAGGTTTTGATGTTTGGGT+AGG - Chr1:75573873-75573892 MsG0180004248.01.T01:intron 40.0%
!! CAGAGAGTTGGTTGTTGTTT+GGG + Chr1:75572760-75572779 None:intergenic 40.0%
!! CGGATCAAGGTTTTGATGTT+TGG - Chr1:75573868-75573887 MsG0180004248.01.T01:intron 40.0%
!! TGCCTTTGTTGATGGCTTAT+GGG - Chr1:75577888-75577907 MsG0180004248.01.T01:intron 40.0%
!! TTGCCTTTGTTGATGGCTTA+TGG - Chr1:75577887-75577906 MsG0180004248.01.T01:intron 40.0%
!!! CTGTCATTTTTTAGGGGAAG+TGG - Chr1:75573678-75573697 MsG0180004248.01.T01:intron 40.0%
!!! TTTTTGGAGGATGATGGATG+AGG + Chr1:75576690-75576709 None:intergenic 40.0%
AAGATAAACCACCTCAGGTG+TGG + Chr1:75577972-75577991 None:intergenic 45.0%
AAGGCAATGATCTGGGTATG+CGG + Chr1:75577874-75577893 None:intergenic 45.0%
AATCAGCATATGGGTGGAAG+TGG - Chr1:75577525-75577544 MsG0180004248.01.T01:intron 45.0%
AATTGGACTTTGTAGGGACG+GGG - Chr1:75576961-75576980 MsG0180004248.01.T01:intron 45.0%
ATTAGCCCTGTACGATCTTG+CGG - Chr1:75575043-75575062 MsG0180004248.01.T01:intron 45.0%
CATTTCCGCAAGATCGTACA+GGG + Chr1:75575051-75575070 None:intergenic 45.0%
CGCACAATTCAGATCAGAGA+GGG + Chr1:75575940-75575959 None:intergenic 45.0%
CTCGAAAAGGGAGAACAGAA+TGG - Chr1:75574716-75574735 MsG0180004248.01.T01:intron 45.0%
CTTCTGATAGAAGACGTGTC+TGG - Chr1:75573151-75573170 MsG0180004248.01.T01:CDS 45.0%
GAAACAGAATTTGGGGGATG+GGG - Chr1:75572656-75572675 MsG0180004248.01.T01:three_prime_UTR 45.0%
GACATGCTGTCATCCATTAC+AGG - Chr1:75575650-75575669 MsG0180004248.01.T01:intron 45.0%
GCCATTTGATACAATCAGGC+AGG - Chr1:75573795-75573814 MsG0180004248.01.T01:intron 45.0%
GGATCACTGGAGAACATATG+AGG + Chr1:75577763-75577782 None:intergenic 45.0%
GTGAAACAGAATTTGGGGGA+TGG - Chr1:75572654-75572673 MsG0180004248.01.T01:three_prime_UTR 45.0%
TAGCAACCATGAATAGGCCA+TGG + Chr1:75573063-75573082 None:intergenic 45.0%
TCATTTCCGCAAGATCGTAC+AGG + Chr1:75575052-75575071 None:intergenic 45.0%
TGATTTCCAGCACACACTCA+AGG - Chr1:75577937-75577956 MsG0180004248.01.T01:intron 45.0%
TTACTTCGACACTCCTAGAC+CGG + Chr1:75576336-75576355 None:intergenic 45.0%
! CGGCTAAGGTCAAATTTTGG+TGG + Chr1:75577854-75577873 None:intergenic 45.0%
! GCAATTTTGTGGAACACCCT+TGG + Chr1:75574095-75574114 None:intergenic 45.0%
! GGAACATACTCTGGAAAAGG+TGG + Chr1:75576719-75576738 None:intergenic 45.0%
! TTTTGCTGCCTTCACTCAAC+CGG - Chr1:75575229-75575248 MsG0180004248.01.T01:intron 45.0%
!! ACTTGGAGAAGGTACCTTTG+CGG + Chr1:75577784-75577803 None:intergenic 45.0%
!! AGAGTTGGTTGTTGTTTGGG+GGG + Chr1:75572757-75572776 None:intergenic 45.0%
!! CCCGTGAAAATTTGCTAAGC+TGG + Chr1:75575551-75575570 None:intergenic 45.0%
!! CCTTTGTTGATGGCTTATGG+GGG - Chr1:75577890-75577909 MsG0180004248.01.T01:intron 45.0%
!! GAGAGTTGGTTGTTGTTTGG+GGG + Chr1:75572758-75572777 None:intergenic 45.0%
!! GCCTTTGTTGATGGCTTATG+GGG - Chr1:75577889-75577908 MsG0180004248.01.T01:intron 45.0%
!! GCGCTGTTTTCAATTAGCAG+TGG - Chr1:75576807-75576826 MsG0180004248.01.T01:intron 45.0%
!! TATATTAATTTATTTATAGA+CGG - Chr1:75576011-75576030 MsG0180004248.01.T01:intron 5.0%
AACATCGCTCACTCCTTCGA+CGG - Chr1:75572721-75572740 MsG0180004248.01.T01:three_prime_UTR 50.0%
ACAACAACAACGAGGTCCTC+CGG - Chr1:75573027-75573046 MsG0180004248.01.T01:CDS 50.0%
ACAATCAGGCAGGTGATGCA+TGG - Chr1:75573805-75573824 MsG0180004248.01.T01:intron 50.0%
ACGTGTCGTACGAGTGTCAT+GGG - Chr1:75576401-75576420 MsG0180004248.01.T01:intron 50.0%
ATCATTGGGCTTCATCCTCG+CGG - Chr1:75573848-75573867 MsG0180004248.01.T01:intron 50.0%
ATGATCTGGGTATGCGGCTA+AGG + Chr1:75577868-75577887 None:intergenic 50.0%
ATTGGACTTTGTAGGGACGG+GGG - Chr1:75576962-75576981 MsG0180004248.01.T01:intron 50.0%
CATCAAAACCTTGATCCGCG+AGG + Chr1:75573866-75573885 None:intergenic 50.0%
CCCCCATAAGCCATCAACAA+AGG + Chr1:75577893-75577912 None:intergenic 50.0%
GAAATGTGCGTGGAACACGT+TGG - Chr1:75573895-75573914 MsG0180004248.01.T01:intron 50.0%
GATGAACTCATTCTTCCCGC+TGG - Chr1:75572781-75572800 MsG0180004248.01.T01:three_prime_UTR 50.0%
GCGCACAATTCAGATCAGAG+AGG + Chr1:75575941-75575960 None:intergenic 50.0%
GCTTCTCCATGGCCTATTCA+TGG - Chr1:75573054-75573073 MsG0180004248.01.T01:CDS 50.0%
GGAGTGCACCACTGATATGA+AGG - Chr1:75578353-75578372 MsG0180004248.01.T01:CDS 50.0%
GTTTGGGTAGGAAATGTGCG+TGG - Chr1:75573885-75573904 MsG0180004248.01.T01:intron 50.0%
TAAACCACCTCAGGTGTGGA+TGG + Chr1:75577968-75577987 None:intergenic 50.0%
TATGAAGCACGGACACCTCT+AGG + Chr1:75576454-75576473 None:intergenic 50.0%
TCAGATCAGAGAGGGTGAGT+AGG + Chr1:75575932-75575951 None:intergenic 50.0%
TGTTCTCCAGTGATCCGCAA+AGG - Chr1:75577767-75577786 MsG0180004248.01.T01:intron 50.0%
TTCAGAGCAAGGGTAACCAG+CGG + Chr1:75572800-75572819 None:intergenic 50.0%
! AAGGTACCTTTGCGGATCAC+TGG + Chr1:75577776-75577795 None:intergenic 50.0%
!! GTGTTATAGGTGTCGGACAC+CGG - Chr1:75576314-75576333 MsG0180004248.01.T01:intron 50.0%
!!! AGCACTTTTGGGATTGGAGC+TGG - Chr1:75575015-75575034 MsG0180004248.01.T01:intron 50.0%
ACTTTGTAGGGACGGGGGTT+GGG - Chr1:75576967-75576986 MsG0180004248.01.T01:intron 55.0%
AGGCCATGGAGAAGCAGAAC+CGG + Chr1:75573049-75573068 None:intergenic 55.0%
CACGTGTCGTACGAGTGTCA+TGG - Chr1:75576400-75576419 MsG0180004248.01.T01:intron 55.0%
GACACTCGTACGACACGTGT+CGG + Chr1:75576399-75576418 None:intergenic 55.0%
GCAGTTCCTTGAGTGTGTGC+TGG + Chr1:75577946-75577965 None:intergenic 55.0%
GGAGTGAGCGATGTTTCCGA+AGG + Chr1:75572716-75572735 None:intergenic 55.0%
TCAGAGCAAGGGTAACCAGC+GGG + Chr1:75572799-75572818 None:intergenic 55.0%
TTGCTTCAACGAGTCACGCG+TGG - Chr1:75576644-75576663 MsG0180004248.01.T01:intron 55.0%
! TACGAGTGTCATGGGAGTGC+CGG - Chr1:75576409-75576428 MsG0180004248.01.T01:intron 55.0%
!! TTTGGGGGATGGGGAGTGTT+TGG - Chr1:75572665-75572684 MsG0180004248.01.T01:three_prime_UTR 55.0%
ACTGCCATCCACACCTGAGG+TGG - Chr1:75577961-75577980 MsG0180004248.01.T01:intron 60.0%
ATCGCTCACTCCTTCGACGG+CGG - Chr1:75572724-75572743 MsG0180004248.01.T01:three_prime_UTR 60.0%
CCATGGAGAAGCAGAACCGG+AGG + Chr1:75573046-75573065 None:intergenic 60.0%
CCTCCGGTTCTGCTTCTCCA+TGG - Chr1:75573043-75573062 MsG0180004248.01.T01:CDS 60.0%
CGTGGAACACGTTGGAGCCA+TGG - Chr1:75573903-75573922 MsG0180004248.01.T01:intron 60.0%
CTTTGTAGGGACGGGGGTTG+GGG - Chr1:75576968-75576987 MsG0180004248.01.T01:intron 60.0%
GACTTTGTAGGGACGGGGGT+TGG - Chr1:75576966-75576985 MsG0180004248.01.T01:intron 60.0%
GGAACTGCCATCCACACCTG+AGG - Chr1:75577958-75577977 MsG0180004248.01.T01:intron 60.0%
GGCTTCATCCTCGCGGATCA+AGG - Chr1:75573855-75573874 MsG0180004248.01.T01:intron 60.0%
TTTGTAGGGACGGGGGTTGG+GGG - Chr1:75576969-75576988 MsG0180004248.01.T01:intron 60.0%
!! CTCTAGGACTAGGCGTGTCG+CGG + Chr1:75576438-75576457 None:intergenic 60.0%
!! GCACGGACACCTCTAGGACT+AGG + Chr1:75576448-75576467 None:intergenic 60.0%
!! TAGGTGTCGGACACCGGTCT+AGG - Chr1:75576320-75576339 MsG0180004248.01.T01:intron 60.0%
ACTAGGCGTGTCGCGGTGTC+CGG + Chr1:75576431-75576450 None:intergenic 65.0%
CGCGACACGCCTAGTCCTAG+AGG - Chr1:75576436-75576455 MsG0180004248.01.T01:intron 65.0%
! GGGTGCGCTGCCGCCGTCGA+AGG + Chr1:75572737-75572756 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr1 gene 75572626 75578459 75572626 ID=MsG0180004248.01;Name=MsG0180004248.01
Chr1 mRNA 75572626 75578459 75572626 ID=MsG0180004248.01.T01;Parent=MsG0180004248.01;Name=MsG0180004248.01.T01;_AED=0.50;_eAED=0.50;_QI=47|0.66|1|1|0.66|0.71|7|360|339
Chr1 exon 75578260 75578459 75578260 ID=MsG0180004248.01.T01:exon:13449;Parent=MsG0180004248.01.T01
Chr1 exon 75578010 75578150 75578010 ID=MsG0180004248.01.T01:exon:13450;Parent=MsG0180004248.01.T01
Chr1 exon 75577132 75577272 75577132 ID=MsG0180004248.01.T01:exon:13451;Parent=MsG0180004248.01.T01
Chr1 exon 75575727 75575870 75575727 ID=MsG0180004248.01.T01:exon:13452;Parent=MsG0180004248.01.T01
Chr1 exon 75575601 75575641 75575601 ID=MsG0180004248.01.T01:exon:13453;Parent=MsG0180004248.01.T01
Chr1 exon 75575414 75575490 75575414 ID=MsG0180004248.01.T01:exon:13454;Parent=MsG0180004248.01.T01
Chr1 exon 75572626 75573308 75572626 ID=MsG0180004248.01.T01:exon:13455;Parent=MsG0180004248.01.T01
Chr1 five_prime_UTR 75578413 75578459 75578413 ID=MsG0180004248.01.T01:five_prime_utr;Parent=MsG0180004248.01.T01
Chr1 CDS 75578260 75578412 75578260 ID=MsG0180004248.01.T01:cds;Parent=MsG0180004248.01.T01
Chr1 CDS 75578010 75578150 75578010 ID=MsG0180004248.01.T01:cds;Parent=MsG0180004248.01.T01
Chr1 CDS 75577132 75577272 75577132 ID=MsG0180004248.01.T01:cds;Parent=MsG0180004248.01.T01
Chr1 CDS 75575727 75575870 75575727 ID=MsG0180004248.01.T01:cds;Parent=MsG0180004248.01.T01
Chr1 CDS 75575601 75575641 75575601 ID=MsG0180004248.01.T01:cds;Parent=MsG0180004248.01.T01
Chr1 CDS 75575414 75575490 75575414 ID=MsG0180004248.01.T01:cds;Parent=MsG0180004248.01.T01
Chr1 CDS 75572986 75573308 75572986 ID=MsG0180004248.01.T01:cds;Parent=MsG0180004248.01.T01
Chr1 three_prime_UTR 75572626 75572985 75572626 ID=MsG0180004248.01.T01:three_prime_utr;Parent=MsG0180004248.01.T01
Gene Sequence

>MsG0180004248.01.T01

ATGGGGAGTGTTTGGTTGACGACAATTGCCATACTCTTATCCTTCGGAAACATCGCTCACTCCTTCGACGGCGGCAGCGCACCCCCCAAACAACAACCAACTCTCTGTGATGAACTCATTCTTCCCGCTGGTTACCCTTGCTCTGAATATGTGATTGAAACAAAGGATGGTTTCTTGTTAGGTCTTCAGCGCGTGTCTTCATCTTCTTCTTCTTCTTTTGCGCGTATTCGTTATTCTGCTCAAAAACAACAACAACGAGGTCCTCCGGTTCTGCTTCTCCATGGCCTATTCATGGCAGGTGATGCATGGTTTCTAAATACACCAGAACAATCATTGGGCTTCATCCTCGCGGATCAAGGTTTTGATGTTTGGGTAGGAAATGTGCGTGGAACACGTTGGAGCCATGGACATAAATCTTTATCAGAGAAGAATAAGGGGACAATTATTTCTTTTGCTGCCTTCACTCAACCGGATATAGTAGAAAAGGTTGAAGCTGCAGCTCTTCTGTCTCCAATTTCATACTTGGATCATATTAGTGCACCTTTGGTACTAAGAATGGAAAAGATGCACATTGATCAGATGATTGCTACAATGGGTGTTCATCAGCTGAATTTCAAAAGCGATTGGGAAACCAATCTCTTGATTTCCTTATGTGATACTCGTCTAAGTTGCAGTGACATGCTGTCATCCATTACAGTGATCCGCAAAGGTACCTTCTCCAAGTACGATTATGGAAAGCTTAAAAATCTGATAGAGTATGGCAATTTCAAACCACCAAAATTTGACCTTAGCCGCATACCCAGATCATTGCCTTTGTTGATGGCTTATGGGGGAAACGATGCTTTAGCAGATGTAACTGATTTCCAGCACACACTCAAGGAACTGCCATCCACACCTGAGGTGGTTTATCTTGAAAACTATGGTCACATTGACTTCATTTTAAGCTTGCAAGCAAAACAAGATCTTTATGACCCTATCATCAGTTTCTTCAAGTCAATGGGGAAATTTAGTAGTATTTAA
Protein sequence

>MsG0180004248.01.T01

MGSVWLTTIAILLSFGNIAHSFDGGSAPPKQQPTLCDELILPAGYPCSEYVIETKDGFLLGLQRVSSSSSSSFARIRYSAQKQQQRGPPVLLLHGLFMAGDAWFLNTPEQSLGFILADQGFDVWVGNVRGTRWSHGHKSLSEKNKGTIISFAAFTQPDIVEKVEAAALLSPISYLDHISAPLVLRMEKMHIDQMIATMGVHQLNFKSDWETNLLISLCDTRLSCSDMLSSITVIRKGTFSKYDYGKLKNLIEYGNFKPPKFDLSRIPRSLPLLMAYGGNDALADVTDFQHTLKELPSTPEVVYLENYGHIDFILSLQAKQDLYDPIISFFKSMGKFSSI*