AlfalfaGEDB | MsG0280007504.01

M. sativa cultivar ZhongmuNo.1 / MsG0280007504.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007504.01.T01	XP_013462938.1	100	73	0	0	1	73	175	247	6.64E-45	155

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007504.01.T01	A0A072V6K8	100.000	73	0	0	1	73	175	247	3.17e-45	155

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048889.01	MsG0280007504.01	0.823192	1.580717e-53	1.351654e-50
MsG0080048992.01	MsG0280007504.01	-0.814522	1.476156e-51	9.927858e-49
MsG0080049023.01	MsG0280007504.01	-0.801312	9.555839e-49	4.549073e-46
MsG0180000096.01	MsG0280007504.01	0.809770	1.605299e-50	9.509224e-48
MsG0180000466.01	MsG0280007504.01	0.815859	7.450654e-52	5.196165e-49
MsG0180000719.01	MsG0280007504.01	-0.811585	6.503720e-51	4.041403e-48
MsG0180001054.01	MsG0280007504.01	-0.824928	6.188710e-54	5.559820e-51
MsG0180001169.01	MsG0280007504.01	0.816906	4.342260e-52	3.116548e-49
MsG0180001615.01	MsG0280007504.01	-0.826371	2.814259e-54	2.634376e-51
MsG0180003258.01	MsG0280007504.01	0.824180	9.282187e-54	8.161408e-51

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007504.01.T01	MTR_2g026670	100.000	73	0	0	1	73	175	247	8.04e-49	155
MsG0280007504.01.T01	MTR_4g133900	64.103	78	19	3	2	74	185	258	1.05e-22	88.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 36 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAAATGCCACCACCTATGG+CGG	0.640749	2:-16384400	None:intergenic
ACAGGTCTACCCTCGTAGCA+TGG	0.615096	2:+16384351	None:intergenic
ACGATAGCTATGGTGGAGGT+GGG	0.588196	2:-16384254	MsG0280007504.01.T01:CDS
ACTGGAACCGCCATAGGTGG+TGG	0.525042	2:+16384393	None:intergenic
AGACCAGTATACGATAGCTA+TGG	0.617281	2:-16384264	MsG0280007504.01.T01:CDS
ATCCCAACTGGAACCGCCAT+AGG	0.607318	2:+16384387	None:intergenic
CACCATACTGATTAGGGTAT+GGG	0.504883	2:+16384316	None:intergenic
CACCTATGGCGGTTCCAGTT+GGG	0.463164	2:-16384389	MsG0280007504.01.T01:CDS
CCAACTGGAACCGCCATAGG+TGG	0.630035	2:+16384390	None:intergenic
CCACCATACTGATTAGGGTA+TGG	0.446251	2:+16384315	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGTATCCGTCATAACATTG+TGG	+	Chr2:16384245-16384264	None:intergenic	35.0%
AGACCAGTATACGATAGCTA+TGG	-	Chr2:16384269-16384288	MsG0280007504.01.T01:CDS	40.0%
CCACCATAGCTATCGTATAC+TGG	+	Chr2:16384275-16384294	None:intergenic	45.0%
CCAGTATACGATAGCTATGG+TGG	-	Chr2:16384272-16384291	MsG0280007504.01.T01:CDS	45.0%
CCATACCCTAATCAGTATGG+TGG	-	Chr2:16384218-16384237	MsG0280007504.01.T01:CDS	45.0%
CGCTGAGATATTGATCGCAT+CGG	+	Chr2:16384319-16384338	None:intergenic	45.0%
GGAACATAACACATCCCAAC+TGG	+	Chr2:16384161-16384180	None:intergenic	45.0%
GGTGGACCACAATGTTATGA+CGG	-	Chr2:16384236-16384255	MsG0280007504.01.T01:CDS	45.0%
GTATACGATAGCTATGGTGG+AGG	-	Chr2:16384275-16384294	MsG0280007504.01.T01:CDS	45.0%
TATGTTCCACCATGCTACGA+GGG	-	Chr2:16384173-16384192	MsG0280007504.01.T01:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	16384137	16384418	16384137	ID=MsG0280007504.01;Name=MsG0280007504.01
Chr2	mRNA	16384137	16384418	16384137	ID=MsG0280007504.01.T01;Parent=MsG0280007504.01;Name=MsG0280007504.01.T01;_AED=0.46;_eAED=0.56;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|93
Chr2	exon	16384137	16384418	16384137	ID=MsG0280007504.01.T01:exon:1234;Parent=MsG0280007504.01.T01
Chr2	CDS	16384137	16384418	16384137	ID=MsG0280007504.01.T01:cds;Parent=MsG0280007504.01.T01

Gene Sequence	>MsG0280007504.01.T01 ATGCCACCACCTATGGCGGTTCCAGTTGGGATGTGTTATGTTCCACCATGCTACGAGGGTAGACCTGTTGGGCCATACGGCCCATACCCTAATCAGTATGGTGGACCACAATGTTATGACGGATACTATGCAAGACCAGTATACGATAGCTATGGTGGAGGTGGGCCGTGTTATGTGGGCCGATGCGATCAATATCTCAGCGAAGAAAACGCAACAGGTGCACATTATGTGATTCTTCATCACATTCACATCACTTTTAGAATTGTTCCTTTGTTTTTATAA
Protein sequence	>MsG0280007504.01.T01 MPPPMAVPVGMCYVPPCYEGRPVGPYGPYPNQYGGPQCYDGYYARPVYDSYGGGGPCYVGRCDQYLSEENATGAHYVILHHIHITFRIVPLFL*