AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080049023.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080049023.01.T01 MTR_7g100540 82.197 264 31 4 1 261 1 251 1.53e-150 420
MsG0080049023.01.T01 MTR_4g097500 27.068 266 164 11 4 260 2 246 4.53e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080049023.01.T01 AT2G37240 58.264 242 71 6 31 261 26 248 8.66e-86 256
MsG0080049023.01.T01 AT5G65840 30.303 198 118 7 70 260 86 270 7.17e-16 75.9

Find 78 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAGATATCTTCAATTTC+TGG 0.106966 contig614end:-12569 None:intergenic
GAGGCCTTACAATTTGTTTC+TGG 0.198475 contig614end:+11818 MsG0080049023.01.T01:CDS
TCTTTCCACAAGTCGGAAAT+TGG 0.210759 contig614end:-10805 None:intergenic
ATTGGTGAAAGTCTTTAATT+TGG 0.225560 contig614end:+10768 MsG0080049023.01.T01:CDS
AGTGGATTATTAGAATATAT+TGG 0.314832 contig614end:-10201 None:intergenic
GTCTTTAATTTGGAAGGAAA+TGG 0.329692 contig614end:+10778 MsG0080049023.01.T01:CDS
GCTCTACCAACAGGATATAA+TGG 0.342546 contig614end:+11508 MsG0080049023.01.T01:CDS
TACCTCAAGTTCACTGGAAT+TGG 0.348966 contig614end:+10750 MsG0080049023.01.T01:CDS
TTAAGATATCTTCAATTTCT+GGG 0.369252 contig614end:-12568 None:intergenic
CCCTTTGCTTCTCCTTCTGC+AGG 0.378932 contig614end:+10258 MsG0080049023.01.T01:CDS
ACGCCATGGAAAGTGGTCTT+AGG 0.380704 contig614end:-10080 None:intergenic
TGGCATTTGCTCGTCACTTT+GGG 0.383103 contig614end:+10842 MsG0080049023.01.T01:CDS
TAAGATAATAGAATTGTATA+TGG 0.387939 contig614end:+12011 MsG0080049023.01.T01:CDS
CATACACACCTTGTGAATAT+AGG 0.399241 contig614end:-12419 None:intergenic
ATTTATTTGTAAGTTTGTTA+AGG 0.405437 contig614end:-10134 None:intergenic
TCTTTAATTTGGAAGGAAAT+GGG 0.405939 contig614end:+10779 MsG0080049023.01.T01:CDS
TTTGATTATGCTCTACCAAC+AGG 0.414977 contig614end:+11499 MsG0080049023.01.T01:CDS
CAAGGAGGAATTATAGTTGC+AGG 0.415807 contig614end:+12376 MsG0080049023.01.T01:CDS
GGATTCCAATTTCCGACTTG+TGG 0.451325 contig614end:+10800 MsG0080049023.01.T01:CDS
TTGGAAGCTTTCATTCGAAA+AGG 0.452486 contig614end:+12050 MsG0080049023.01.T01:CDS
GTGAAAGTCTTTAATTTGGA+AGG 0.460670 contig614end:+10772 MsG0080049023.01.T01:CDS
GGTGTAGCACTTGTATTGAT+TGG 0.464978 contig614end:+11539 MsG0080049023.01.T01:CDS
TGGAAGGTTATCGACAAGAT+TGG 0.474176 contig614end:+12031 MsG0080049023.01.T01:CDS
AACTCCAGAAACAAATTGTA+AGG 0.478715 contig614end:-11822 None:intergenic
AGGAGAAGCAAAGGGTATAG+TGG 0.493170 contig614end:-10250 None:intergenic
GTGGCATTTGCTCGTCACTT+TGG 0.493294 contig614end:+10841 MsG0080049023.01.T01:CDS
TGTGATGTGAGCTTGTCATT+TGG 0.496465 contig614end:-12730 None:intergenic
TGAGCTTGTCATTTGGCAAA+TGG 0.498674 contig614end:-12723 None:intergenic
AGCAAAGGGTATAGTGGTGG+TGG 0.503365 contig614end:-10244 None:intergenic
TCTGCATAGATTTCTAGAAC+AGG 0.505032 contig614end:-11776 None:intergenic
CTTGTCATTTGGCAAATGGC+TGG 0.508063 contig614end:-12719 None:intergenic
CACCAATTCCAGTGAACTTG+AGG 0.509684 contig614end:-10752 None:intergenic
TTTCCGACTTGTGGAAAGAT+CGG 0.512535 contig614end:+10809 MsG0080049023.01.T01:CDS
CAGGATATAATGGATGCATC+TGG 0.513244 contig614end:+11518 MsG0080049023.01.T01:CDS
CTTCCTAAGACCACTTTCCA+TGG 0.514061 contig614end:+10077 MsG0080049023.01.T01:exon
GGAATTATAGTTGCAGGTCC+TGG 0.514996 contig614end:+12382 MsG0080049023.01.T01:CDS
CCCCGCTCAATCGTCATATG+AGG 0.519619 contig614end:+11799 MsG0080049023.01.T01:CDS
GCCTCATATGACGATTGAGC+GGG 0.522306 contig614end:-11800 None:intergenic
TGAGGATACCTCAAGTTCAC+TGG 0.525231 contig614end:+10744 MsG0080049023.01.T01:CDS
ATCAGCACTTTAACAGAACC+TGG 0.526005 contig614end:+11750 MsG0080049023.01.T01:intron
TGGACCTGGCAACATTGATC+AGG 0.530445 contig614end:+11559 MsG0080049023.01.T01:CDS
TTAGCTGTTGCACTACAGGC+AGG 0.531261 contig614end:+11985 MsG0080049023.01.T01:CDS
ATAGTTGCAGGTCCTGGTAA+AGG 0.534747 contig614end:+12388 MsG0080049023.01.T01:CDS
GCCTGCAGAAGGAGAAGCAA+AGG 0.542339 contig614end:-10259 None:intergenic
AGCATAATCAAAACTAGAGA+AGG 0.544594 contig614end:-11488 None:intergenic
CATGAGTAGGACAAAGAAGC+AGG 0.545391 contig614end:+12539 MsG0080049023.01.T01:intron
GGTTGTTTCTCTTACTTTGG+GGG 0.547054 contig614end:-11858 None:intergenic
CGTACCTGATCAATGTTGCC+AGG 0.553282 contig614end:-11563 None:intergenic
TTTCCGATCTTTCCACAAGT+CGG 0.555110 contig614end:-10812 None:intergenic
ATAATAGAATTGTATATGGA+AGG 0.563362 contig614end:+12015 MsG0080049023.01.T01:CDS
AGACAAAACTTGCCTGCAGA+AGG 0.565291 contig614end:-10270 None:intergenic
GTAGAGCACGCCATGGAAAG+TGG 0.565597 contig614end:-10087 None:intergenic
GATTTCTAGAACAGGTAACC+AGG 0.569074 contig614end:-11768 None:intergenic
GAGGTATCCTCACTCAGCAC+TGG 0.577985 contig614end:-10733 None:intergenic
GAAAGATCGGAAAGCAGTTG+TGG 0.578451 contig614end:+10822 MsG0080049023.01.T01:CDS
AAAGGGTATAGTGGTGGTGG+TGG 0.582654 contig614end:-10241 None:intergenic
AAGGATACTGTTAGCAGAGG+AGG 0.583125 contig614end:+12069 MsG0080049023.01.T01:CDS
CCTGCAGAAGGAGAAGCAAA+GGG 0.584870 contig614end:-10258 None:intergenic
TAGGAGATGTTACCTTTACC+AGG 0.585319 contig614end:-12400 None:intergenic
ATGCATCCATTATATCCTGT+TGG 0.591089 contig614end:-11514 None:intergenic
GATACATGATGCAGTTTGAG+TGG 0.593247 contig614end:-10219 None:intergenic
AGAAGCAAAGGGTATAGTGG+TGG 0.594832 contig614end:-10247 None:intergenic
TGACACTGTGGCAGGCAACA+AGG 0.606308 contig614end:+12358 MsG0080049023.01.T01:intron
ATACTGTTAGCAGAGGAGGC+TGG 0.626834 contig614end:+12073 MsG0080049023.01.T01:CDS
GCAACAGCTAAAATTAACAC+GGG 0.626892 contig614end:-11973 None:intergenic
AAGCGTTGTAGAGCACGCCA+TGG 0.629032 contig614end:-10094 None:intergenic
TGCAACAGCTAAAATTAACA+CGG 0.639442 contig614end:-11974 None:intergenic
GCACTTGTATTGATTGGACC+TGG 0.646245 contig614end:+11545 MsG0080049023.01.T01:CDS
GCTCGTGAAGAAAGAAGAGG+TGG 0.647733 contig614end:+12600 MsG0080049023.01.T01:exon
GAAAAGGATACTGTTAGCAG+AGG 0.658204 contig614end:+12066 MsG0080049023.01.T01:CDS
TGTACATGCTCTACGATGAG+AGG 0.660110 contig614end:-12625 None:intergenic
TGAGTCTCCAGTGCTGAGTG+AGG 0.668139 contig614end:+10726 MsG0080049023.01.T01:CDS
GGCCTCATATGACGATTGAG+CGG 0.670971 contig614end:-11801 None:intergenic
CCTCATATGACGATTGAGCG+GGG 0.684441 contig614end:-11799 None:intergenic
GTTGCTCGTGAAGAAAGAAG+AGG 0.696037 contig614end:+12597 MsG0080049023.01.T01:exon
TAACATCTCCTATATTCACA+AGG 0.715027 contig614end:+12411 MsG0080049023.01.T01:CDS
CACTGTGGCAGGCAACAAGG+AGG 0.721602 contig614end:+12361 MsG0080049023.01.T01:intron
CAACAGCTAAAATTAACACG+GGG 0.744832 contig614end:-11972 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAAATATTAAACAAAA+AGG - contig614end:11440-11459 None:intergenic 10.0%
!! AAACAAATATTAAACAAAAA+GGG - contig614end:11439-11458 None:intergenic 10.0%
!! AATATATTAGTTAGATAATA+TGG + contig614end:10590-10609 MsG0080049023.01.T01:intron 10.0%
!! ATATATTAGTTAGATAATAT+GGG + contig614end:10591-10610 MsG0080049023.01.T01:intron 10.0%
!! TTACTTATGAATAAAAAATT+AGG - contig614end:11882-11901 None:intergenic 10.0%
!! TAAGATAATAGAATTGTATA+TGG + contig614end:12011-12030 MsG0080049023.01.T01:CDS 15.0%
!!! AAATTTTATAGAATCTATCT+TGG + contig614end:12458-12477 MsG0080049023.01.T01:intron 15.0%
!!! AGTTTTTGTTAAATATACAA+AGG + contig614end:11948-11967 MsG0080049023.01.T01:intron 15.0%
!!! ATTTATTTGTAAGTTTGTTA+AGG - contig614end:10137-10156 None:intergenic 15.0%
!!! GTATTTTCTTAAATTATTAC+AGG - contig614end:10480-10499 None:intergenic 15.0%
!!! TCTATAAAATTTTGAGTATA+GGG - contig614end:12450-12469 None:intergenic 15.0%
!!! TTCTATAAAATTTTGAGTAT+AGG - contig614end:12451-12470 None:intergenic 15.0%
!! AGTAATAAATAAAACACATG+TGG + contig614end:11897-11916 MsG0080049023.01.T01:intron 20.0%
!! ATAATAGAATTGTATATGGA+AGG + contig614end:12015-12034 MsG0080049023.01.T01:CDS 20.0%
!! TACATTGAATCTATAATTAG+AGG + contig614end:12226-12245 MsG0080049023.01.T01:intron 20.0%
!! TGTCAAGTTCATAATATTAA+AGG - contig614end:12343-12362 None:intergenic 20.0%
!! TTAAGATATCTTCAATTTCT+GGG - contig614end:12571-12590 None:intergenic 20.0%
!!! AGTGGATTATTAGAATATAT+TGG - contig614end:10204-10223 None:intergenic 20.0%
!!! ATTCATTTTCATGATAAACA+TGG + contig614end:10363-10382 MsG0080049023.01.T01:intron 20.0%
!!! TTTAAGATATCTTCAATTTC+TGG - contig614end:12572-12591 None:intergenic 20.0%
! AAAACAGCAATCTTAATATG+AGG - contig614end:11263-11282 None:intergenic 25.0%
! AATACAAGTGATTAAATGTG+TGG + contig614end:10495-10514 MsG0080049023.01.T01:intron 25.0%
! AATCTATCTTGGAATATTCA+TGG + contig614end:12469-12488 MsG0080049023.01.T01:intron 25.0%
! ATTGGTGAAAGTCTTTAATT+TGG + contig614end:10768-10787 MsG0080049023.01.T01:CDS 25.0%
! CTAATACCTATATTTAACAC+AGG + contig614end:11636-11655 MsG0080049023.01.T01:intron 25.0%
! GTTTAGATTAACAGTGAATA+GGG + contig614end:10921-10940 MsG0080049023.01.T01:intron 25.0%
! TGTTTAGATTAACAGTGAAT+AGG + contig614end:10920-10939 MsG0080049023.01.T01:intron 25.0%
! TTGAAGCTTCAATAAAATCA+TGG + contig614end:10987-11006 MsG0080049023.01.T01:intron 25.0%
! TTGTTACACAATTCAATTTC+AGG - contig614end:11064-11083 None:intergenic 25.0%
!! GATGTCTTCTTTATCATTTT+TGG + contig614end:12174-12193 MsG0080049023.01.T01:intron 25.0%
!! TAGTGAATTTTGTCAAATCA+CGG - contig614end:11018-11037 None:intergenic 25.0%
!!! ATTAAGATTGCTGTTTTTCT+TGG + contig614end:11266-11285 MsG0080049023.01.T01:intron 25.0%
!!! TCTTTAATTTGGAAGGAAAT+GGG + contig614end:10779-10798 MsG0080049023.01.T01:CDS 25.0%
!!! TTTTGATTAAGTGAAAGTGT+GGG - contig614end:10177-10196 None:intergenic 25.0%
AAATGTGTGGATATTGGTAT+TGG + contig614end:10508-10527 MsG0080049023.01.T01:intron 30.0%
AACAGAAAACATTACCTTCT+TGG - contig614end:11148-11167 None:intergenic 30.0%
AACTCCAGAAACAAATTGTA+AGG - contig614end:11825-11844 None:intergenic 30.0%
ACAAAAACCATGAGTATGTT+TGG - contig614end:11416-11435 None:intergenic 30.0%
AGCATAATCAAAACTAGAGA+AGG - contig614end:11491-11510 None:intergenic 30.0%
AGCTAGCAAGAATCAAATTA+TGG - contig614end:11236-11255 None:intergenic 30.0%
ATATTATGAACTTGACACTG+TGG + contig614end:12346-12365 MsG0080049023.01.T01:intron 30.0%
ATGCATCTCTATTCAAAATG+TGG + contig614end:11388-11407 MsG0080049023.01.T01:intron 30.0%
ATTATCCATACCACTCTTAA+AGG + contig614end:12142-12161 MsG0080049023.01.T01:intron 30.0%
GAGCAAACAAAATTTAAAGG+AGG + contig614end:11673-11692 MsG0080049023.01.T01:intron 30.0%
GCTGAGCAAACAAAATTTAA+AGG + contig614end:11670-11689 MsG0080049023.01.T01:intron 30.0%
GTGATTAAATGTGTGGATAT+TGG + contig614end:10502-10521 MsG0080049023.01.T01:intron 30.0%
GTGCAATAAAAATAGACAAG+TGG - contig614end:10328-10347 None:intergenic 30.0%
TAACATCTCCTATATTCACA+AGG + contig614end:12411-12430 MsG0080049023.01.T01:CDS 30.0%
TCACACATTGAAACAATTGT+TGG - contig614end:10692-10711 None:intergenic 30.0%
TGCAACAGCTAAAATTAACA+CGG - contig614end:11977-11996 None:intergenic 30.0%
TGCATCTCTATTCAAAATGT+GGG + contig614end:11389-11408 MsG0080049023.01.T01:intron 30.0%
TTAACAATTGCATATGTTGC+AGG + contig614end:11085-11104 MsG0080049023.01.T01:intron 30.0%
TTTCAATGTGTGAATATGAC+CGG + contig614end:10699-10718 MsG0080049023.01.T01:intron 30.0%
! TCTTAGAATGCTGGAATTTT+CGG + contig614end:11611-11630 MsG0080049023.01.T01:intron 30.0%
!! AAATTTTGTTTGCTCAGCAA+AGG - contig614end:11668-11687 None:intergenic 30.0%
!! CTTTTGATTAAGTGAAAGTG+TGG - contig614end:10178-10197 None:intergenic 30.0%
!! GTCTTTAATTTGGAAGGAAA+TGG + contig614end:10778-10797 MsG0080049023.01.T01:CDS 30.0%
!! GTGAAAGTCTTTAATTTGGA+AGG + contig614end:10772-10791 MsG0080049023.01.T01:CDS 30.0%
!! TAGGTTGTTTCTCTTACTTT+GGG - contig614end:11863-11882 None:intergenic 30.0%
!! TTAGGTTGTTTCTCTTACTT+TGG - contig614end:11864-11883 None:intergenic 30.0%
AAAAGGTAAGTGTTCAACAG+AGG - contig614end:10663-10682 None:intergenic 35.0%
AAAGTGCAGCTTACAACATA+AGG - contig614end:11467-11486 None:intergenic 35.0%
AAATTTCATCGAACGCATCA+CGG + contig614end:11187-11206 MsG0080049023.01.T01:intron 35.0%
ACAAGTGGTTGAGAATACAA+GGG - contig614end:10313-10332 None:intergenic 35.0%
ATGCATCCATTATATCCTGT+TGG - contig614end:11517-11536 None:intergenic 35.0%
CAACAGCTAAAATTAACACG+GGG - contig614end:11975-11994 None:intergenic 35.0%
CATACACACCTTGTGAATAT+AGG - contig614end:12422-12441 None:intergenic 35.0%
CATGCACACATCTAACAAAA+TGG - contig614end:10902-10921 None:intergenic 35.0%
CTTTGGCCTGTGTTAAATAT+AGG - contig614end:11645-11664 None:intergenic 35.0%
GATAGTGTAAGACTTCTTGT+AGG - contig614end:12112-12131 None:intergenic 35.0%
GCAACAGCTAAAATTAACAC+GGG - contig614end:11976-11995 None:intergenic 35.0%
TACATTACAGAAACTAGCAC+AGG - contig614end:11720-11739 None:intergenic 35.0%
TCAGTACTTACAGTCTTCTT+AGG + contig614end:11310-11329 MsG0080049023.01.T01:intron 35.0%
TGATAAAGAAGACATCACAG+AGG - contig614end:12170-12189 None:intergenic 35.0%
TGATAGAAGAAAGCTCTCTT+TGG + contig614end:12273-12292 MsG0080049023.01.T01:intron 35.0%
TGATTATCTTGCATCCAAGA+AGG + contig614end:11131-11150 MsG0080049023.01.T01:intron 35.0%
TTCAATGTGTGAATATGACC+GGG + contig614end:10700-10719 MsG0080049023.01.T01:intron 35.0%
TTGGAAGCTTTCATTCGAAA+AGG + contig614end:12050-12069 MsG0080049023.01.T01:CDS 35.0%
TTTGATTATGCTCTACCAAC+AGG + contig614end:11499-11518 MsG0080049023.01.T01:CDS 35.0%
! AGTTTTTGCCAAAATTGTCG+TGG - contig614end:10962-10981 None:intergenic 35.0%
! CAAGATAATCAGCTCTTTTG+CGG - contig614end:11122-11141 None:intergenic 35.0%
!! ACAATTGTTGGCTCTCAAAA+AGG - contig614end:10680-10699 None:intergenic 35.0%
!! AGGTTGTTTCTCTTACTTTG+GGG - contig614end:11862-11881 None:intergenic 35.0%
!! TCTGCATAGATTTCTAGAAC+AGG - contig614end:11779-11798 None:intergenic 35.0%
!! TGAACAGTAGCTTTTTCTTG+AGG + contig614end:12662-12681 MsG0080049023.01.T01:three_prime_UTR 35.0%
!! TTCCAGCATTCTAAGATGTT+AGG - contig614end:11607-11626 None:intergenic 35.0%
!!! AATTTTAGCTGTTGCACTAC+AGG + contig614end:11981-12000 MsG0080049023.01.T01:CDS 35.0%
ACGTCTTCACTCTAATGTCT+CGG + contig614end:10557-10576 MsG0080049023.01.T01:intron 40.0%
ATCAGCACTTTAACAGAACC+TGG + contig614end:11750-11769 MsG0080049023.01.T01:intron 40.0%
CAAGGAGGAATTATAGTTGC+AGG + contig614end:12376-12395 MsG0080049023.01.T01:CDS 40.0%
CAAGTGGTTGAGAATACAAG+GGG - contig614end:10312-10331 None:intergenic 40.0%
CAGTGAATAGGGAAGAATCA+AGG + contig614end:10932-10951 MsG0080049023.01.T01:intron 40.0%
CTCCTAACATCTTAGAATGC+TGG + contig614end:11602-11621 MsG0080049023.01.T01:intron 40.0%
CTTTCTTCTATCAGCAAGCA+AGG - contig614end:12266-12285 None:intergenic 40.0%
GAAAAGGATACTGTTAGCAG+AGG + contig614end:12066-12085 MsG0080049023.01.T01:CDS 40.0%
GACAAGTGGTTGAGAATACA+AGG - contig614end:10314-10333 None:intergenic 40.0%
GATACATGATGCAGTTTGAG+TGG - contig614end:10222-10241 None:intergenic 40.0%
GCTCTACCAACAGGATATAA+TGG + contig614end:11508-11527 MsG0080049023.01.T01:CDS 40.0%
TACCTCAAGTTCACTGGAAT+TGG + contig614end:10750-10769 MsG0080049023.01.T01:CDS 40.0%
TAGGAGATGTTACCTTTACC+AGG - contig614end:12403-12422 None:intergenic 40.0%
TCAAATGTGCTCACATGAGT+AGG + contig614end:12526-12545 MsG0080049023.01.T01:intron 40.0%
TCTTTCCACAAGTCGGAAAT+TGG - contig614end:10808-10827 None:intergenic 40.0%
TGGAAGGTTATCGACAAGAT+TGG + contig614end:12031-12050 MsG0080049023.01.T01:CDS 40.0%
TGTAAGCTGTGCAAGATTCT+TGG - contig614end:10410-10429 None:intergenic 40.0%
TGTGATGTGAGCTTGTCATT+TGG - contig614end:12733-12752 None:intergenic 40.0%
TTTCCGATCTTTCCACAAGT+CGG - contig614end:10815-10834 None:intergenic 40.0%
! AGGATCCTTTAAGAGTGGTA+TGG - contig614end:12150-12169 None:intergenic 40.0%
! GAGGCCTTACAATTTGTTTC+TGG + contig614end:11818-11837 MsG0080049023.01.T01:CDS 40.0%
! GGTGTAGCACTTGTATTGAT+TGG + contig614end:11539-11558 MsG0080049023.01.T01:CDS 40.0%
! GTCTTCTTAGGAGACGATTT+TGG + contig614end:11322-11341 MsG0080049023.01.T01:intron 40.0%
! TCTTACTTTGGGGGTAAATG+TGG - contig614end:11852-11871 None:intergenic 40.0%
! TGAGCTTGTCATTTGGCAAA+TGG - contig614end:12726-12745 None:intergenic 40.0%
! TTTCCGACTTGTGGAAAGAT+CGG + contig614end:10809-10828 MsG0080049023.01.T01:CDS 40.0%
!! CAGGATATAATGGATGCATC+TGG + contig614end:11518-11537 MsG0080049023.01.T01:CDS 40.0%
!! GATTTCTAGAACAGGTAACC+AGG - contig614end:11771-11790 None:intergenic 40.0%
!! GGTTGTTTCTCTTACTTTGG+GGG - contig614end:11861-11880 None:intergenic 40.0%
!!! TTAGGAGACGATTTTGGTTC+TGG + contig614end:11328-11347 MsG0080049023.01.T01:intron 40.0%
AAGGATACTGTTAGCAGAGG+AGG + contig614end:12069-12088 MsG0080049023.01.T01:CDS 45.0%
AGACAAAACTTGCCTGCAGA+AGG - contig614end:10273-10292 None:intergenic 45.0%
ATAGTTGCAGGTCCTGGTAA+AGG + contig614end:12388-12407 MsG0080049023.01.T01:CDS 45.0%
CACCAATTCCAGTGAACTTG+AGG - contig614end:10755-10774 None:intergenic 45.0%
CATGAGTAGGACAAAGAAGC+AGG + contig614end:12539-12558 MsG0080049023.01.T01:intron 45.0%
CATTAGAGTGAAGACGTGTC+TGG - contig614end:10554-10573 None:intergenic 45.0%
CTTCCTAAGACCACTTTCCA+TGG + contig614end:10077-10096 MsG0080049023.01.T01:exon 45.0%
GAAAGATCGGAAAGCAGTTG+TGG + contig614end:10822-10841 MsG0080049023.01.T01:CDS 45.0%
GGAATTATAGTTGCAGGTCC+TGG + contig614end:12382-12401 MsG0080049023.01.T01:CDS 45.0%
GTTGCTCGTGAAGAAAGAAG+AGG + contig614end:12597-12616 MsG0080049023.01.T01:exon 45.0%
TATGAACTTGACACTGTGGC+AGG + contig614end:12350-12369 MsG0080049023.01.T01:intron 45.0%
TCAGGAGCTAAGTGCATGAT+TGG - contig614end:11046-11065 None:intergenic 45.0%
TGAGGATACCTCAAGTTCAC+TGG + contig614end:10744-10763 MsG0080049023.01.T01:CDS 45.0%
TGTACATGCTCTACGATGAG+AGG - contig614end:12628-12647 None:intergenic 45.0%
TGTGGGTCCAAACATACTCA+TGG + contig614end:11406-11425 MsG0080049023.01.T01:intron 45.0%
TGTTTGCTCAGCAAAGGCTT+TGG - contig614end:11662-11681 None:intergenic 45.0%
! AAGGTGAGCCACGACAATTT+TGG + contig614end:10951-10970 MsG0080049023.01.T01:intron 45.0%
! AGAAGCAAAGGGTATAGTGG+TGG - contig614end:10250-10269 None:intergenic 45.0%
! AGGAGAAGCAAAGGGTATAG+TGG - contig614end:10253-10272 None:intergenic 45.0%
! CACAGAGGATCCTTTAAGAG+TGG - contig614end:12155-12174 None:intergenic 45.0%
! CTTGTCATTTGGCAAATGGC+TGG - contig614end:12722-12741 None:intergenic 45.0%
! GGATTCCAATTTCCGACTTG+TGG + contig614end:10800-10819 MsG0080049023.01.T01:CDS 45.0%
! TGGCATTTGCTCGTCACTTT+GGG + contig614end:10842-10861 MsG0080049023.01.T01:CDS 45.0%
!! GCACTTGTATTGATTGGACC+TGG + contig614end:11545-11564 MsG0080049023.01.T01:CDS 45.0%
!!! CGATTTTGGTTCTGGACTTC+TGG + contig614end:11336-11355 MsG0080049023.01.T01:intron 45.0%
ACGCCATGGAAAGTGGTCTT+AGG - contig614end:10083-10102 None:intergenic 50.0%
ATACTGTTAGCAGAGGAGGC+TGG + contig614end:12073-12092 MsG0080049023.01.T01:CDS 50.0%
CCTCATATGACGATTGAGCG+GGG - contig614end:11802-11821 None:intergenic 50.0%
CCTGCAGAAGGAGAAGCAAA+GGG - contig614end:10261-10280 None:intergenic 50.0%
CGTACCTGATCAATGTTGCC+AGG - contig614end:11566-11585 None:intergenic 50.0%
GCAACATTGATCAGGTACGC+AGG + contig614end:11567-11586 MsG0080049023.01.T01:intron 50.0%
GCCTCATATGACGATTGAGC+GGG - contig614end:11803-11822 None:intergenic 50.0%
GCTCGTGAAGAAAGAAGAGG+TGG + contig614end:12600-12619 MsG0080049023.01.T01:exon 50.0%
GGCCTCATATGACGATTGAG+CGG - contig614end:11804-11823 None:intergenic 50.0%
GTGGCATTTGCTCGTCACTT+TGG + contig614end:10841-10860 MsG0080049023.01.T01:CDS 50.0%
TGGACCTGGCAACATTGATC+AGG + contig614end:11559-11578 MsG0080049023.01.T01:CDS 50.0%
TTAGCTGTTGCACTACAGGC+AGG + contig614end:11985-12004 MsG0080049023.01.T01:CDS 50.0%
! AGCAAAGGGTATAGTGGTGG+TGG - contig614end:10247-10266 None:intergenic 50.0%
!! AAAGGGTATAGTGGTGGTGG+TGG - contig614end:10244-10263 None:intergenic 50.0%
CCCCGCTCAATCGTCATATG+AGG + contig614end:11799-11818 MsG0080049023.01.T01:CDS 55.0%
CCCTTTGCTTCTCCTTCTGC+AGG + contig614end:10258-10277 MsG0080049023.01.T01:CDS 55.0%
GCCTGCAGAAGGAGAAGCAA+AGG - contig614end:10262-10281 None:intergenic 55.0%
GTAGAGCACGCCATGGAAAG+TGG - contig614end:10090-10109 None:intergenic 55.0%
TGACACTGTGGCAGGCAACA+AGG + contig614end:12358-12377 MsG0080049023.01.T01:intron 55.0%
! AAGCGTTGTAGAGCACGCCA+TGG - contig614end:10097-10116 None:intergenic 55.0%
! AGCACTGGAGACTCAACTCC+CGG - contig614end:10721-10740 None:intergenic 55.0%
! GAGGTATCCTCACTCAGCAC+TGG - contig614end:10736-10755 None:intergenic 55.0%
! TGAGTCTCCAGTGCTGAGTG+AGG + contig614end:10726-10745 MsG0080049023.01.T01:CDS 55.0%
CACTGTGGCAGGCAACAAGG+AGG + contig614end:12361-12380 MsG0080049023.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
contig614end gene 10042 12834 10042 ID=MsG0080049023.01;Name=MsG0080049023.01
contig614end mRNA 10042 12834 10042 ID=MsG0080049023.01.T01;Parent=MsG0080049023.01;Name=MsG0080049023.01.T01;_AED=0.37;_eAED=0.40;_QI=54|0.5|0.57|1|0.83|0.71|7|227|261
contig614end exon 10042 10279 10042 ID=MsG0080049023.01.T01:exon:17494;Parent=MsG0080049023.01.T01
contig614end exon 10722 10863 10722 ID=MsG0080049023.01.T01:exon:17495;Parent=MsG0080049023.01.T01
contig614end exon 11478 11580 11478 ID=MsG0080049023.01.T01:exon:17496;Parent=MsG0080049023.01.T01
contig614end exon 11755 11865 11755 ID=MsG0080049023.01.T01:exon:17497;Parent=MsG0080049023.01.T01
contig614end exon 11970 12094 11970 ID=MsG0080049023.01.T01:exon:17498;Parent=MsG0080049023.01.T01
contig614end exon 12372 12432 12372 ID=MsG0080049023.01.T01:exon:17499;Parent=MsG0080049023.01.T01
contig614end exon 12548 12834 12548 ID=MsG0080049023.01.T01:exon:17500;Parent=MsG0080049023.01.T01
contig614end five_prime_UTR 10042 10095 10042 ID=MsG0080049023.01.T01:five_prime_utr;Parent=MsG0080049023.01.T01
contig614end CDS 10096 10279 10096 ID=MsG0080049023.01.T01:cds;Parent=MsG0080049023.01.T01
contig614end CDS 10722 10863 10722 ID=MsG0080049023.01.T01:cds;Parent=MsG0080049023.01.T01
contig614end CDS 11478 11580 11478 ID=MsG0080049023.01.T01:cds;Parent=MsG0080049023.01.T01
contig614end CDS 11755 11865 11755 ID=MsG0080049023.01.T01:cds;Parent=MsG0080049023.01.T01
contig614end CDS 11970 12094 11970 ID=MsG0080049023.01.T01:cds;Parent=MsG0080049023.01.T01
contig614end CDS 12372 12432 12372 ID=MsG0080049023.01.T01:cds;Parent=MsG0080049023.01.T01
contig614end CDS 12548 12607 12548 ID=MsG0080049023.01.T01:cds;Parent=MsG0080049023.01.T01
contig614end three_prime_UTR 12608 12834 12608 ID=MsG0080049023.01.T01:three_prime_utr;Parent=MsG0080049023.01.T01
Gene Sequence

>MsG0080049023.01.T01

ATGGCGTGCTCTACAACGCTTTTGTCGAATTCTTTTCACCTTAACAAACTTACAAATAAATGTAAGCTACATGTATATCCCACACTTTCACTTAATCAAAAGCTTCCAATATATTCTAATAATCCACTCAAACTGCATCATGTATCCACCACCACCACTATACCCTTTGCTTCTCCTTCTGCAGGAGTTGAGTCTCCAGTGCTGAGTGAGGATACCTCAAGTTCACTGGAATTGGTGAAAGTCTTTAATTTGGAAGGAAATGGGATTCCAATTTCCGACTTGTGGAAAGATCGGAAAGCAGTTGTGGCATTTGCTCGTCACTTTGGCTGCACTTTACCTTCTCTAGTTTTGATTATGCTCTACCAACAGGATATAATGGATGCATCTGGTGTAGCACTTGTATTGATTGGACCTGGCAACATTGATCAGCACTTTAACAGAACCTGGTTACCTGTTCTAGAAATCTATGCAGACCCCGCTCAATCGTCATATGAGGCCTTACAATTTGTTTCTGGAGTTTTAACCACATTTACCCCCAAAGACCCCGTGTTAATTTTAGCTGTTGCACTACAGGCAGGTCTTAAGATAATAGAATTGTATATGGAAGGTTATCGACAAGATTGGAAGCTTTCATTCGAAAAGGATACTGTTAGCAGAGGAGGCTGGCAACAAGGAGGAATTATAGTTGCAGGTCCTGGTAAAGGTAACATCTCCTATATTCACAAGGACAAAGAAGCAGGAGATGACCCAGAAATTGAAGATATCTTAAAAGCATGTTGCTCGTGA

Protein sequence

>MsG0080049023.01.T01

MACSTTLLSNSFHLNKLTNKCKLHVYPTLSLNQKLPIYSNNPLKLHHVSTTTTIPFASPSAGVESPVLSEDTSSSLELVKVFNLEGNGIPISDLWKDRKAVVAFARHFGCTLPSLVLIMLYQQDIMDASGVALVLIGPGNIDQHFNRTWLPVLEIYADPAQSSYEALQFVSGVLTTFTPKDPVLILAVALQAGLKIIELYMEGYRQDWKLSFEKDTVSRGGWQQGGIIVAGPGKGNISYIHKDKEAGDDPEIEDILKACCS*