AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048992.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048992.01.T01 MTR_7g053090 97.837 416 8 1 1 415 1 416 0.0 800
MsG0080048992.01.T01 MTR_5g011440 41.424 309 167 5 96 393 110 415 5.02e-63 209
MsG0080048992.01.T01 MTR_5g011440 41.424 309 167 5 96 393 117 422 5.20e-63 209
MsG0080048992.01.T01 MTR_5g011450 41.860 301 165 5 96 387 16 315 3.36e-62 204
MsG0080048992.01.T01 MTR_4g113090 41.000 300 172 3 93 391 100 395 2.54e-60 201
MsG0080048992.01.T01 MTR_5g011440 41.980 293 156 5 96 377 117 406 6.48e-59 197
MsG0080048992.01.T01 MTR_2g073190 35.312 320 199 4 77 391 355 671 5.59e-46 168
MsG0080048992.01.T01 MTR_2g073070 37.288 236 142 4 167 399 8 240 2.58e-35 130
MsG0080048992.01.T01 MTR_2g078500 38.272 81 47 1 125 202 38 118 3.82e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048992.01.T01 AT3G25410 73.458 373 88 4 31 402 56 418 0.0 530
MsG0080048992.01.T01 AT4G22840 39.776 357 188 8 55 393 56 403 2.84e-70 227
MsG0080048992.01.T01 AT4G12030 41.479 311 168 5 97 396 9 316 8.80e-65 210
MsG0080048992.01.T01 AT4G12030 41.479 311 168 5 97 396 100 407 1.42e-64 213
MsG0080048992.01.T01 AT2G26900 41.333 300 171 3 93 391 99 394 1.79e-60 202
MsG0080048992.01.T01 AT4G12030 43.116 276 143 5 132 396 1 273 2.50e-57 189
MsG0080048992.01.T01 AT4G12030 43.116 276 143 5 132 396 1 273 2.50e-57 189
MsG0080048992.01.T01 AT4G12030 43.116 276 143 5 132 396 1 273 2.50e-57 189
MsG0080048992.01.T01 AT1G78560 36.093 302 189 3 93 393 95 393 4.71e-48 169

Find 115 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCTCACAGCTTGTGTTTC+AGG 0.064988 contig594end:-12402 MsG0080048992.01.T01:CDS
AAATCTTCGTTTCTTAAATT+TGG 0.131700 contig594end:-13798 MsG0080048992.01.T01:CDS
TTATTAACCGGTCTTCTAAT+TGG 0.198158 contig594end:-12276 MsG0080048992.01.T01:CDS
CTGCCTTCACCTTAGGATAT+TGG 0.236729 contig594end:-11741 MsG0080048992.01.T01:CDS
GGAATGGAAGCCATTGAAAA+AGG 0.319289 contig594end:+14002 MsG0080048992.01.T01:intergenic
AAGCCTGCATAAAACATTCT+AGG 0.319366 contig594end:+12426 MsG0080048992.01.T01:intergenic
ATGCAGAGCTCCACACTTGC+AGG 0.326442 contig594end:-10591 MsG0080048992.01.T01:CDS
ACTTATCGTTTCTCATTTGT+TGG 0.326589 contig594end:-10394 MsG0080048992.01.T01:three_prime_UTR
TGCTCAACTTCTAAGTTTCA+TGG 0.330319 contig594end:-13852 MsG0080048992.01.T01:CDS
ACGAAGATTTCCCTTCAATA+TGG 0.333533 contig594end:+13811 MsG0080048992.01.T01:intergenic
CATGTCAAAGTCAATATTAC+AGG 0.348460 contig594end:-12226 MsG0080048992.01.T01:intron
GTGTTGATTGCAAAGGCTTT+TGG 0.352496 contig594end:-12453 MsG0080048992.01.T01:CDS
TGTTGTAGCCATGGCTATAA+TGG 0.352603 contig594end:-10514 MsG0080048992.01.T01:CDS
CATGCTGCTGCCTTCACCTT+AGG 0.359179 contig594end:-11748 MsG0080048992.01.T01:CDS
TTTCAAGTGTATAGGTTAGT+TGG 0.369531 contig594end:-10297 MsG0080048992.01.T01:three_prime_UTR
ATTAGAAGACCGGTTAATAA+AGG 0.370953 contig594end:+12279 MsG0080048992.01.T01:intergenic
CATTGGGATAGGACTATCTA+TGG 0.373106 contig594end:-12656 MsG0080048992.01.T01:CDS
TCTCAAACCTTCCATCCTTA+AGG 0.384028 contig594end:-11717 MsG0080048992.01.T01:intron
AAGAGAGGTTGGAAAGATAG+AGG 0.386240 contig594end:+13939 MsG0080048992.01.T01:intergenic
AACAATAACCGACGCAATAG+TGG 0.386749 contig594end:+12305 MsG0080048992.01.T01:intergenic
AATGTTGTTGTTGGTGGTGG+TGG 0.391691 contig594end:-13765 MsG0080048992.01.T01:CDS
GCAGCATGAAATATTAATAC+TGG 0.392284 contig594end:+11763 MsG0080048992.01.T01:intergenic
ATTGTTACGCCTTTATTAAC+CGG 0.394459 contig594end:-12288 MsG0080048992.01.T01:CDS
GGACAATGAATTTAATATAG+TGG 0.410351 contig594end:-10363 MsG0080048992.01.T01:three_prime_UTR
GTTGGTGGTGGTGGTGATGT+TGG 0.410444 contig594end:-13756 MsG0080048992.01.T01:CDS
GTTGATGAAAATGTTGTTGT+TGG 0.424595 contig594end:-13774 MsG0080048992.01.T01:CDS
GTTGTAGCCATGGCTATAAT+GGG 0.430006 contig594end:-10513 MsG0080048992.01.T01:CDS
GTGGGATTATGTTGTCCATT+GGG 0.432042 contig594end:-12672 MsG0080048992.01.T01:CDS
GCAGTAACAGCAACAACAAA+AGG 0.435076 contig594end:+13696 MsG0080048992.01.T01:intergenic
GGCAGGAAGAACAGGTGAGC+AGG 0.444537 contig594end:-10635 MsG0080048992.01.T01:CDS
GACATGGCAACTGCATCAAC+CGG 0.444864 contig594end:+12243 MsG0080048992.01.T01:intergenic
TTGTCACAGGCAGGAAGAAC+AGG 0.451789 contig594end:-10643 MsG0080048992.01.T01:intron
GTTGGGTTTAACCATATTGA+AGG 0.457040 contig594end:-13822 MsG0080048992.01.T01:CDS
TGAGACCCTTTGAAGGGAAA+AGG 0.463191 contig594end:+13902 MsG0080048992.01.T01:intergenic
AGTTTCATGGTGGAAGAGTT+GGG 0.463551 contig594end:-13839 MsG0080048992.01.T01:CDS
CACCCTTTGAGACCCTTTGA+AGG 0.464243 contig594end:+13895 MsG0080048992.01.T01:intergenic
GTTGTTGCTCCGGTGACACT+TGG 0.473845 contig594end:-11940 MsG0080048992.01.T01:CDS
AAGTTTCATGGTGGAAGAGT+TGG 0.474732 contig594end:-13840 MsG0080048992.01.T01:CDS
AGCGAGTGCGTAAGAGAGGT+TGG 0.474946 contig594end:+13928 MsG0080048992.01.T01:intergenic
AGGCCTTTGCCACTTTCCAT+TGG 0.475623 contig594end:-12513 MsG0080048992.01.T01:CDS
AACATAATCCCACCAAGTGC+TGG 0.478188 contig594end:+12682 MsG0080048992.01.T01:intergenic
TCTCATTTGTTGGCATTCGT+TGG 0.481508 contig594end:-10384 MsG0080048992.01.T01:three_prime_UTR
GATGAAAATGTTGTTGTTGG+TGG 0.483280 contig594end:-13771 MsG0080048992.01.T01:CDS
TTCCCTTCAAAGGGTCTCAA+AGG 0.483931 contig594end:-13898 MsG0080048992.01.T01:CDS
CGCCTGACAAAATTTGACTT+CGG 0.484249 contig594end:+11806 MsG0080048992.01.T01:intergenic
GGGGTGTGAAGAGGAATGAG+GGG 0.485071 contig594end:+14031 MsG0080048992.01.T01:intergenic
ATGCAAGCTTTATAAGCAAA+GGG 0.488212 contig594end:-12362 MsG0080048992.01.T01:CDS
TTTACAGGTTGTTGTTGCTC+CGG 0.497636 contig594end:-11950 MsG0080048992.01.T01:intron
TCCCTTCAAAGGGTCTCAAA+GGG 0.498763 contig594end:-13897 MsG0080048992.01.T01:CDS
CAGAGATGGCTAGGAAATGT+AGG 0.501301 contig594end:-10331 MsG0080048992.01.T01:three_prime_UTR
GGTGGGATTATGTTGTCCAT+TGG 0.503050 contig594end:-12673 MsG0080048992.01.T01:CDS
AAGTGTGGAGCTCTGCATTC+CGG 0.505559 contig594end:+10596 MsG0080048992.01.T01:intergenic
TTAGGCCTCAAAAGCAGAAT+CGG 0.509487 contig594end:+10416 MsG0080048992.01.T01:intergenic
GTCAGGCGAAGGTCTTCGAT+TGG 0.511001 contig594end:-11791 MsG0080048992.01.T01:CDS
GTGAAGGTAATGATGACAAC+AGG 0.512253 contig594end:+10445 MsG0080048992.01.T01:intergenic
CAAATGAGAAACGATAAGTT+AGG 0.512714 contig594end:+10398 MsG0080048992.01.T01:intergenic
GAAAATGTTGTTGTTGGTGG+TGG 0.514319 contig594end:-13768 MsG0080048992.01.T01:CDS
TGCAAGAAGGCCTGCAAGTG+TGG 0.515778 contig594end:+10581 MsG0080048992.01.T01:intergenic
AAGATTGAAGAAGAAGATGA+GGG 0.516460 contig594end:+14060 MsG0080048992.01.T01:intergenic
TGCATGTTCTGTTGTAGCCA+TGG 0.517184 contig594end:-10523 MsG0080048992.01.T01:CDS
GCTTGTAAGAACAATGCATA+AGG 0.519680 contig594end:+12332 MsG0080048992.01.T01:intergenic
GAAGATTGAAGAAGAAGATG+AGG 0.520443 contig594end:+14059 MsG0080048992.01.T01:intergenic
GGTCGAAGAATAGATACAAC+TGG 0.521194 contig594end:+11892 MsG0080048992.01.T01:intergenic
GGGTGTGAAGAGGAATGAGG+GGG 0.523434 contig594end:+14032 MsG0080048992.01.T01:intergenic
GCAATCAACACACCAAGTAC+AGG 0.525650 contig594end:+12465 MsG0080048992.01.T01:intergenic
GGAGTGAATGGAGAGAAAAC+AGG 0.528916 contig594end:+13981 MsG0080048992.01.T01:intergenic
TCTAATTGGATCTGTTGTGC+CGG 0.531991 contig594end:-12262 MsG0080048992.01.T01:CDS
GGAACCCCACCAAGTAAAAG+TGG 0.532912 contig594end:+13650 MsG0080048992.01.T01:intergenic
CTGTAATATTGACTTTGACA+TGG 0.533145 contig594end:+12227 MsG0080048992.01.T01:intergenic
GTGATGTTGGTGAAAGAGAT+TGG 0.536602 contig594end:-13743 MsG0080048992.01.T01:CDS
ATTATGTTGTCCATTGGGAT+AGG 0.538168 contig594end:-12667 MsG0080048992.01.T01:CDS
ACTTGGTGTGTTGATTGCAA+AGG 0.540051 contig594end:-12460 MsG0080048992.01.T01:CDS
GTACAAATCATAGCAACAAA+GGG 0.540347 contig594end:+11862 MsG0080048992.01.T01:intergenic
GAATGGAGAGAAAACAGGAA+TGG 0.540916 contig594end:+13986 MsG0080048992.01.T01:intergenic
GGTGTGAAGAGGAATGAGGG+GGG 0.541090 contig594end:+14033 MsG0080048992.01.T01:intergenic
ATAGCAACAAAGGGCATCAC+AGG 0.544933 contig594end:+11871 MsG0080048992.01.T01:intergenic
TATGCAAGCTTTATAAGCAA+AGG 0.546167 contig594end:-12363 MsG0080048992.01.T01:CDS
GCAATAAATCCAATGGAAAG+TGG 0.553333 contig594end:+12504 MsG0080048992.01.T01:intergenic
ACCCTTTGAGACCCTTTGAA+GGG 0.553739 contig594end:+13896 MsG0080048992.01.T01:intergenic
AGAAGAAGACCAAGTGTCAC+CGG 0.555128 contig594end:+11931 MsG0080048992.01.T01:intergenic
TTGGGTTTAACCATATTGAA+GGG 0.556859 contig594end:-13821 MsG0080048992.01.T01:CDS
TATGTACTGAAACCTGTACT+TGG 0.557862 contig594end:-12477 MsG0080048992.01.T01:CDS
TATATGCTCCAGCACTTGGT+GGG 0.561381 contig594end:-12690 MsG0080048992.01.T01:CDS
TACTAATATCAGAGATGGCT+AGG 0.561824 contig594end:-10340 MsG0080048992.01.T01:three_prime_UTR
AACAGATCCAATTAGAAGAC+CGG 0.566058 contig594end:+12269 MsG0080048992.01.T01:intergenic
ATTTGTACTTCATTGTGCAT+TGG 0.567873 contig594end:-11847 MsG0080048992.01.T01:CDS
AAGCTATACCACTATTGCGT+CGG 0.568809 contig594end:-12313 MsG0080048992.01.T01:CDS
GAGTTATATGCTCCAGCACT+TGG 0.569173 contig594end:-12694 MsG0080048992.01.T01:CDS
AAGTGGGCATACCTTAAGGA+TGG 0.574106 contig594end:+11706 MsG0080048992.01.T01:intergenic
GGGCATACCTTAAGGATGGA+AGG 0.574803 contig594end:+11710 MsG0080048992.01.T01:intergenic
TTATATGCTCCAGCACTTGG+TGG 0.577794 contig594end:-12691 MsG0080048992.01.T01:CDS
GAAGAGCGAGTGCGTAAGAG+AGG 0.579231 contig594end:+13924 MsG0080048992.01.T01:intergenic
AGGACAATTTCATTATGCAC+CGG 0.579651 contig594end:-10615 MsG0080048992.01.T01:CDS
TGACTTCGGTTTATAGCAAG+AGG 0.580840 contig594end:+11820 MsG0080048992.01.T01:intergenic
ATATTGAGCAATAAATCCAA+TGG 0.589160 contig594end:+12497 MsG0080048992.01.T01:intergenic
AGTGGTACTAATATCAGAGA+TGG 0.590087 contig594end:-10345 MsG0080048992.01.T01:three_prime_UTR
GTTTGAGAACCAATATCCTA+AGG 0.590940 contig594end:+11732 MsG0080048992.01.T01:intergenic
TAGTAGCAAGTCTATGTACA+AGG 0.596487 contig594end:+10158 MsG0080048992.01.T01:intergenic
AATCCAATGGAAAGTGGCAA+AGG 0.598051 contig594end:+12510 MsG0080048992.01.T01:intergenic
CATAGATAGTCCTATCCCAA+TGG 0.598854 contig594end:+12657 MsG0080048992.01.T01:intergenic
GCAGAATCGGTTCTGAGTGA+AGG 0.602984 contig594end:+10429 MsG0080048992.01.T01:intergenic
CTTCAAAGGGTCTCAAAGGG+TGG 0.608490 contig594end:-13894 MsG0080048992.01.T01:CDS
AGTACAAATCATAGCAACAA+AGG 0.608493 contig594end:+11861 MsG0080048992.01.T01:intergenic
GAACCAATATCCTAAGGTGA+AGG 0.613291 contig594end:+11738 MsG0080048992.01.T01:intergenic
ACAGAGACCCATTATAGCCA+TGG 0.620465 contig594end:+10506 MsG0080048992.01.T01:intergenic
CCCCACCAAGTAAAAGTGGA+AGG 0.630594 contig594end:+13654 MsG0080048992.01.T01:intergenic
GACTTCGGTTTATAGCAAGA+GGG 0.640397 contig594end:+11821 MsG0080048992.01.T01:intergenic
ATGGCTACAACAGAACATGC+AGG 0.649051 contig594end:+10525 MsG0080048992.01.T01:intergenic
AGATTGAAGAAGAAGATGAG+GGG 0.662587 contig594end:+14061 MsG0080048992.01.T01:intergenic
CTCCTGAAACACAAGCTGTG+AGG 0.689260 contig594end:+12400 MsG0080048992.01.T01:intergenic
TAACACTGTATACACGACCA+AGG 0.698470 contig594end:-10259 MsG0080048992.01.T01:three_prime_UTR
TGCAAGCTTTATAAGCAAAG+GGG 0.704367 contig594end:-12361 MsG0080048992.01.T01:CDS
TCAACTTCTAAGTTTCATGG+TGG 0.738174 contig594end:-13849 MsG0080048992.01.T01:CDS
GCTACAACAGAACATGCAGG+AGG 0.738196 contig594end:+10528 MsG0080048992.01.T01:intergenic
AAAATGTATTCATTGTAACG+CGG 0.769348 contig594end:-10236 MsG0080048992.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAGTAGAAAATAAAATA+CGG + contig594end:13523-13542 MsG0080048992.01.T01:intergenic 10.0%
!! TCAATTATATTTAGAAAAAA+AGG - contig594end:13136-13155 MsG0080048992.01.T01:intron 10.0%
!!! ATTAATTAATACTTGTTTTA+AGG - contig594end:10632-10651 MsG0080048992.01.T01:CDS 10.0%
!!! TAAGTAAATTTTACTTTTTT+AGG + contig594end:11057-11076 MsG0080048992.01.T01:intergenic 10.0%
!! AAAATATATATCTTTCCATA+AGG - contig594end:12888-12907 MsG0080048992.01.T01:intron 15.0%
!! AAATTTACTTATAATTGAGA+AGG - contig594end:11066-11085 MsG0080048992.01.T01:intron 15.0%
!! AATTTACTTATAATTGAGAA+GGG - contig594end:11067-11086 MsG0080048992.01.T01:intron 15.0%
!! ATACATATAAACTAAACAAA+AGG + contig594end:10731-10750 MsG0080048992.01.T01:intergenic 15.0%
!! ATATATATAATTGTTCCTTA+TGG + contig594end:12906-12925 MsG0080048992.01.T01:intergenic 15.0%
!! TACATATAAACTAAACAAAA+GGG + contig594end:10730-10749 MsG0080048992.01.T01:intergenic 15.0%
!!! ATAGCAAAAAACAAAATTTT+AGG + contig594end:13330-13349 MsG0080048992.01.T01:intergenic 15.0%
!!! GGTTTTTCTATTTTTAAAAT+AGG - contig594end:13263-13282 MsG0080048992.01.T01:intron 15.0%
!!! TAGCAAAAAACAAAATTTTA+GGG + contig594end:13329-13348 MsG0080048992.01.T01:intergenic 15.0%
!!! TGTTTTTTATTGAGATTATT+GGG - contig594end:10775-10794 MsG0080048992.01.T01:intron 15.0%
!!! TTAATTTGTGAAAATTTTAC+AGG - contig594end:12254-12273 MsG0080048992.01.T01:CDS 15.0%
!!! TTGTTTTTTATTGAGATTAT+TGG - contig594end:10774-10793 MsG0080048992.01.T01:intron 15.0%
!!! TTTAGTTTATATGTATGTAT+TGG - contig594end:10735-10754 MsG0080048992.01.T01:intron 15.0%
!! AAATCTTCGTTTCTTAAATT+TGG - contig594end:10421-10440 MsG0080048992.01.T01:CDS 20.0%
!! ATTAGTTATGTTTGTTCATT+TGG - contig594end:12594-12613 MsG0080048992.01.T01:intron 20.0%
!! ATTTAGTACATACAGAAAAA+TGG - contig594end:13162-13181 MsG0080048992.01.T01:intron 20.0%
!! TAATGAATATTGAAAGAAGT+TGG + contig594end:11668-11687 MsG0080048992.01.T01:intergenic 20.0%
!!! ACAAAAAATTTCAAGTGTAT+AGG - contig594end:13914-13933 MsG0080048992.01.T01:CDS 20.0%
!!! CAATATATTGATTGACAAAT+TGG + contig594end:11324-11343 MsG0080048992.01.T01:intergenic 20.0%
!!! GTTTTTTATTGAGATTATTG+GGG - contig594end:10776-10795 MsG0080048992.01.T01:intron 20.0%
!!! TATTTGACATTGCATATTTT+GGG + contig594end:13065-13084 MsG0080048992.01.T01:intergenic 20.0%
!!! TTCAATATACTTTCTAAAGT+GGG + contig594end:12532-12551 MsG0080048992.01.T01:intergenic 20.0%
!!! TTTCAATATACTTTCTAAAG+TGG + contig594end:12533-12552 MsG0080048992.01.T01:intergenic 20.0%
!!! TTTTGTCTGTTTTTCAAAAA+CGG - contig594end:11636-11655 MsG0080048992.01.T01:intron 20.0%
!!! TTTTTAAAATAGGTCCAATT+TGG - contig594end:13273-13292 MsG0080048992.01.T01:intron 20.0%
! AAAATGTATTCATTGTAACG+CGG - contig594end:13983-14002 MsG0080048992.01.T01:CDS 25.0%
! ATAGCAATGCTATAACATAA+CGG + contig594end:13411-13430 MsG0080048992.01.T01:intergenic 25.0%
! ATATTGAGCAATAAATCCAA+TGG + contig594end:11725-11744 MsG0080048992.01.T01:intergenic 25.0%
! ATGATAACACTTTCCAAAAT+TGG + contig594end:13007-13026 MsG0080048992.01.T01:intergenic 25.0%
! GAACAAACATAACTAATTAC+TGG + contig594end:12591-12610 MsG0080048992.01.T01:intergenic 25.0%
! GGACAATGAATTTAATATAG+TGG - contig594end:13856-13875 MsG0080048992.01.T01:CDS 25.0%
! GTTAATTCACAACATTCAAT+TGG + contig594end:12752-12771 MsG0080048992.01.T01:intergenic 25.0%
! TATATTCTTACTACTGAGAT+TGG - contig594end:12971-12990 MsG0080048992.01.T01:intron 25.0%
! TCAAATAAATACTTTGTCAC+AGG - contig594end:13563-13582 MsG0080048992.01.T01:intron 25.0%
! TCACATCTCTGATATTAAAA+TGG + contig594end:12845-12864 MsG0080048992.01.T01:intergenic 25.0%
!! ACCTGAATTTGATTTAATGT+CGG - contig594end:12230-12249 MsG0080048992.01.T01:CDS 25.0%
!! CTATTTGACATTGCATATTT+TGG + contig594end:13066-13085 MsG0080048992.01.T01:intergenic 25.0%
!! TACAATGAATACATTTTCCT+TGG + contig594end:13980-13999 MsG0080048992.01.T01:intergenic 25.0%
!! TCAATATTACAGGTAAGTTT+TGG - contig594end:12003-12022 MsG0080048992.01.T01:intron 25.0%
!!! ACATTTTGATAAAGAGCTTT+AGG - contig594end:12688-12707 MsG0080048992.01.T01:CDS 25.0%
!!! CATTTTGATAAAGAGCTTTA+GGG - contig594end:12689-12708 MsG0080048992.01.T01:CDS 25.0%
AAGATTGAAGAAGAAGATGA+GGG + contig594end:10162-10181 MsG0080048991.01.T01:intergenic 30.0%
ACTTATCGTTTCTCATTTGT+TGG - contig594end:13825-13844 MsG0080048992.01.T01:CDS 30.0%
AGTACAAATCATAGCAACAA+AGG + contig594end:12361-12380 MsG0080048992.01.T01:intergenic 30.0%
ATTAGAAGACCGGTTAATAA+AGG + contig594end:11943-11962 MsG0080048992.01.T01:intergenic 30.0%
ATTGTTACGCCTTTATTAAC+CGG - contig594end:11931-11950 MsG0080048992.01.T01:CDS 30.0%
ATTTGTACTTCATTGTGCAT+TGG - contig594end:12372-12391 MsG0080048992.01.T01:CDS 30.0%
CAAAAGACATGCAAATTCTA+AGG + contig594end:10593-10612 MsG0080048992.01.T01:intergenic 30.0%
CAAATGAGAAACGATAAGTT+AGG + contig594end:13824-13843 MsG0080048992.01.T01:intergenic 30.0%
CATACAGAAAAATGGAATGT+AGG - contig594end:13170-13189 MsG0080048992.01.T01:intron 30.0%
CATGTCAAAGTCAATATTAC+AGG - contig594end:11993-12012 MsG0080048992.01.T01:intron 30.0%
CTACGTATTACAGTGAATAT+AGG - contig594end:13220-13239 MsG0080048992.01.T01:intron 30.0%
GATTTATTTCAACTGCTATG+TGG + contig594end:13118-13137 MsG0080048992.01.T01:intergenic 30.0%
GCAGCATGAAATATTAATAC+TGG + contig594end:12459-12478 MsG0080048992.01.T01:intergenic 30.0%
GCTATCATGTGTTTGATTAA+AGG - contig594end:10969-10988 MsG0080048992.01.T01:intron 30.0%
GTACAAATCATAGCAACAAA+GGG + contig594end:12360-12379 MsG0080048992.01.T01:intergenic 30.0%
GTTATGTTTGTTCATTTGGT+AGG - contig594end:12598-12617 MsG0080048992.01.T01:intron 30.0%
TACTTATAATTGAGAAGGGA+TGG - contig594end:11071-11090 MsG0080048992.01.T01:intron 30.0%
TCCGACATTAAATCAAATTC+AGG + contig594end:12234-12253 MsG0080048992.01.T01:intergenic 30.0%
TGTTATCATGTTATCAAGAG+TGG - contig594end:13018-13037 MsG0080048992.01.T01:intron 30.0%
TTATTAACCGGTCTTCTAAT+TGG - contig594end:11943-11962 MsG0080048992.01.T01:CDS 30.0%
TTGCAAACAAAAGTTAGTAC+AGG + contig594end:13475-13494 MsG0080048992.01.T01:intergenic 30.0%
TTGGGTTTAACCATATTGAA+GGG - contig594end:10398-10417 MsG0080048992.01.T01:exon 30.0%
! ACACATTTGTTAATAGAGAC+AGG + contig594end:11015-11034 MsG0080048992.01.T01:intergenic 30.0%
! ATGCAAGCTTTATAAGCAAA+GGG - contig594end:11857-11876 MsG0080048992.01.T01:CDS 30.0%
! ATTTGTTAATAGAGACAGGA+GGG + contig594end:11011-11030 MsG0080048992.01.T01:intergenic 30.0%
! ATTTTGCTCTTGCATTCAAA+AGG - contig594end:11589-11608 MsG0080048992.01.T01:intron 30.0%
! CTTAGAATTTGCATGTCTTT+TGG - contig594end:10591-10610 MsG0080048992.01.T01:CDS 30.0%
! CTTCTTGCAACTCAATTTTT+GGG - contig594end:13652-13671 MsG0080048992.01.T01:intron 30.0%
! GTTGATGAAAATGTTGTTGT+TGG - contig594end:10445-10464 MsG0080048992.01.T01:CDS 30.0%
! TATGCAAGCTTTATAAGCAA+AGG - contig594end:11856-11875 MsG0080048992.01.T01:CDS 30.0%
! TTTCAAGTGTATAGGTTAGT+TGG - contig594end:13922-13941 MsG0080048992.01.T01:CDS 30.0%
! TTTTAGTGTGCTTCATAGTT+AGG + contig594end:10831-10850 MsG0080048992.01.T01:intergenic 30.0%
!! AGGTTTATGCTTTTGTTTCA+TGG + contig594end:10263-10282 MsG0080048992.01.T01:intergenic 30.0%
!! CTGTAATATTGACTTTGACA+TGG + contig594end:11995-12014 MsG0080048992.01.T01:intergenic 30.0%
!! GGTTTATGCTTTTGTTTCAT+GGG + contig594end:10262-10281 MsG0080048992.01.T01:intergenic 30.0%
!!! ATTTGCATGTCTTTTGGTTT+TGG - contig594end:10597-10616 MsG0080048992.01.T01:CDS 30.0%
!!! TATTTTGATGATTCTGTTGC+AGG - contig594end:11686-11705 MsG0080048992.01.T01:intron 30.0%
!!! TCAACTTGTTTTACTGATCA+GGG - contig594end:11494-11513 MsG0080048992.01.T01:intron 30.0%
!!! TTCAACTTGTTTTACTGATC+AGG - contig594end:11493-11512 MsG0080048992.01.T01:intron 30.0%
AACAGATCCAATTAGAAGAC+CGG + contig594end:11953-11972 MsG0080048991.01.T01:intergenic 35.0%
AACATCTAATCTTGATCCAG+CGG + contig594end:11180-11199 MsG0080048991.01.T01:intergenic 35.0%
AAGCCTGCATAAAACATTCT+AGG + contig594end:11796-11815 MsG0080048991.01.T01:intergenic 35.0%
AATCAAACACATGATAGCCT+AGG + contig594end:10967-10986 MsG0080048992.01.T01:intergenic 35.0%
ACGAAGATTTCCCTTCAATA+TGG + contig594end:10411-10430 MsG0080048992.01.T01:intergenic 35.0%
AGATTGAAGAAGAAGATGAG+GGG + contig594end:10161-10180 MsG0080048992.01.T01:intergenic 35.0%
AGGACAATTTCATTATGCAC+CGG - contig594end:13604-13623 MsG0080048992.01.T01:intron 35.0%
AGTGGTACTAATATCAGAGA+TGG - contig594end:13874-13893 MsG0080048992.01.T01:CDS 35.0%
ATAAATACTTTGTCACAGGC+AGG - contig594end:13567-13586 MsG0080048992.01.T01:intron 35.0%
ATACTCTGCATTTGCATAGT+CGG - contig594end:11143-11162 MsG0080048992.01.T01:intron 35.0%
ATTATGTTGTCCATTGGGAT+AGG - contig594end:11552-11571 MsG0080048992.01.T01:intron 35.0%
ATTGCCATAATAGCGAAACT+AGG - contig594end:13348-13367 MsG0080048992.01.T01:intron 35.0%
CCAACTTCAATCCTAAATCA+AGG + contig594end:12658-12677 MsG0080048992.01.T01:intergenic 35.0%
CTATCCTAGTTTCGCTATTA+TGG + contig594end:13355-13374 MsG0080048992.01.T01:intergenic 35.0%
GAAGATTGAAGAAGAAGATG+AGG + contig594end:10163-10182 MsG0080048992.01.T01:intergenic 35.0%
GATATTTGACAACACTGCAT+CGG - contig594end:13435-13454 MsG0080048992.01.T01:intron 35.0%
GCAATAAATCCAATGGAAAG+TGG + contig594end:11718-11737 MsG0080048992.01.T01:intergenic 35.0%
GCTTGTAAGAACAATGCATA+AGG + contig594end:11890-11909 MsG0080048992.01.T01:intergenic 35.0%
GTATTCATTTCCATAGCAGA+GGG + contig594end:11112-11131 MsG0080048992.01.T01:intergenic 35.0%
GTTAGTTGACGCATATAGAA+AGG - contig594end:11442-11461 MsG0080048992.01.T01:intron 35.0%
GTTGGGTTTAACCATATTGA+AGG - contig594end:10397-10416 MsG0080048992.01.T01:exon 35.0%
GTTTGAGAACCAATATCCTA+AGG + contig594end:12490-12509 MsG0080048992.01.T01:intergenic 35.0%
TAATCAGTGTTGTCAACTAG+AGG - contig594end:12053-12072 MsG0080048992.01.T01:intron 35.0%
TACTAATATCAGAGATGGCT+AGG - contig594end:13879-13898 MsG0080048992.01.T01:CDS 35.0%
TAGTAGCAAGTCTATGTACA+AGG + contig594end:14064-14083 MsG0080048992.01.T01:intergenic 35.0%
TATGTACTGAAACCTGTACT+TGG - contig594end:11742-11761 MsG0080048992.01.T01:CDS 35.0%
TATTCATTTCCATAGCAGAG+GGG + contig594end:11111-11130 MsG0080048992.01.T01:intergenic 35.0%
TCAACTTCTAAGTTTCATGG+TGG - contig594end:10370-10389 MsG0080048992.01.T01:three_prime_UTR 35.0%
TCTTCCTTCTCATTCTTGTT+GGG - contig594end:12779-12798 MsG0080048992.01.T01:intron 35.0%
TGCTCAACTTCTAAGTTTCA+TGG - contig594end:10367-10386 MsG0080048992.01.T01:three_prime_UTR 35.0%
TGTATTCATTTCCATAGCAG+AGG + contig594end:11113-11132 MsG0080048992.01.T01:intergenic 35.0%
TTATTGAGATTATTGGGGAG+TGG - contig594end:10781-10800 MsG0080048992.01.T01:intron 35.0%
TTCTTCCTTCTCATTCTTGT+TGG - contig594end:12778-12797 MsG0080048992.01.T01:intron 35.0%
TTGACGCATATAGAAAGGAA+TGG - contig594end:11447-11466 MsG0080048992.01.T01:intron 35.0%
! AACCGAAGTCAAATTTTGTC+AGG - contig594end:12411-12430 MsG0080048992.01.T01:CDS 35.0%
! AAGGGATGGAGTATTATATC+AGG - contig594end:11085-11104 MsG0080048992.01.T01:intron 35.0%
! ACTTTCCAAAATTGGTTCAG+AGG + contig594end:12999-13018 MsG0080048992.01.T01:intergenic 35.0%
! CATTTGTTAATAGAGACAGG+AGG + contig594end:11012-11031 MsG0080048992.01.T01:intergenic 35.0%
! CCAAAAATTGAGTTGCAAGA+AGG + contig594end:13654-13673 MsG0080048992.01.T01:intergenic 35.0%
! CCTTCTTGCAACTCAATTTT+TGG - contig594end:13651-13670 MsG0080048992.01.T01:intron 35.0%
! CCTTGATTTAGGATTGAAGT+TGG - contig594end:12655-12674 MsG0080048992.01.T01:CDS 35.0%
! GATGAAAATGTTGTTGTTGG+TGG - contig594end:10448-10467 MsG0080048992.01.T01:CDS 35.0%
! TGCAAGCTTTATAAGCAAAG+GGG - contig594end:11858-11877 MsG0080048992.01.T01:CDS 35.0%
! TTGCCTAGAATGTTTTATGC+AGG - contig594end:11790-11809 MsG0080048992.01.T01:CDS 35.0%
! TTGTGTCATTGCCTTGATTT+AGG - contig594end:12644-12663 MsG0080048992.01.T01:CDS 35.0%
!! ATCAAAAGTGTCGGTGTTAA+AGG - contig594end:10937-10956 MsG0080048992.01.T01:intron 35.0%
!! ATGTTATCAAGAGTGGATTG+CGG - contig594end:13025-13044 MsG0080048992.01.T01:intron 35.0%
!! TCAAAAGTGTCGGTGTTAAA+GGG - contig594end:10938-10957 MsG0080048992.01.T01:intron 35.0%
!! TTTTGTTTCATGGGAGTGAA+TGG + contig594end:10253-10272 MsG0080048992.01.T01:intergenic 35.0%
!!! AGCATCACTGTTTTTTGTAG+TGG - contig594end:13373-13392 MsG0080048992.01.T01:intron 35.0%
AAAACCCTTTCCCCAAAAAG+AGG + contig594end:13743-13762 MsG0080048991.01.T01:intergenic 40.0%
AACAATAACCGACGCAATAG+TGG + contig594end:11917-11936 MsG0080048991.01.T01:intergenic 40.0%
AACCGAGTAGAATAAGTCGT+TGG + contig594end:12726-12745 MsG0080048991.01.T01:intergenic 40.0%
AAGAGAGGTTGGAAAGATAG+AGG + contig594end:10283-10302 MsG0080048991.01.T01:intergenic 40.0%
AAGCCATTGAAAAAGGAGAG+AGG + contig594end:10213-10232 MsG0080048991.01.T01:intergenic 40.0%
AAGCTATACCACTATTGCGT+CGG - contig594end:11906-11925 MsG0080048992.01.T01:CDS 40.0%
AATCCAATGGAAAGTGGCAA+AGG + contig594end:11712-11731 MsG0080048992.01.T01:intergenic 40.0%
AGCCATTGAAAAAGGAGAGA+GGG + contig594end:10212-10231 MsG0080048992.01.T01:intergenic 40.0%
CAAATAGCAGATAGTGATGC+TGG - contig594end:13079-13098 MsG0080048992.01.T01:intron 40.0%
CATAGATAGTCCTATCCCAA+TGG + contig594end:11565-11584 MsG0080048992.01.T01:intergenic 40.0%
CATTGGGATAGGACTATCTA+TGG - contig594end:11563-11582 MsG0080048992.01.T01:intron 40.0%
GAACCAATATCCTAAGGTGA+AGG + contig594end:12484-12503 MsG0080048992.01.T01:intergenic 40.0%
GAATGGAGAGAAAACAGGAA+TGG + contig594end:10236-10255 MsG0080048992.01.T01:intergenic 40.0%
GACTTCGGTTTATAGCAAGA+GGG + contig594end:12401-12420 MsG0080048992.01.T01:intergenic 40.0%
GCAGATGTACTATAGCATAG+CGG - contig594end:12160-12179 MsG0080048992.01.T01:intron 40.0%
GCAGTAACAGCAACAACAAA+AGG + contig594end:10526-10545 MsG0080048992.01.T01:intergenic 40.0%
GGAATGGAAGCCATTGAAAA+AGG + contig594end:10220-10239 MsG0080048992.01.T01:intergenic 40.0%
GGTCGAAGAATAGATACAAC+TGG + contig594end:12330-12349 MsG0080048992.01.T01:intergenic 40.0%
GTCCAACGACTTATTCTACT+CGG - contig594end:12721-12740 MsG0080048992.01.T01:intron 40.0%
GTGAAGGTAATGATGACAAC+AGG + contig594end:13777-13796 MsG0080048992.01.T01:intergenic 40.0%
GTGGGATTATGTTGTCCATT+GGG - contig594end:11547-11566 MsG0080048992.01.T01:intron 40.0%
GTTGTAGCCATGGCTATAAT+GGG - contig594end:13706-13725 MsG0080048992.01.T01:CDS 40.0%
TAACACTGTATACACGACCA+AGG - contig594end:13960-13979 MsG0080048992.01.T01:CDS 40.0%
TCTAATTGGATCTGTTGTGC+CGG - contig594end:11957-11976 MsG0080048992.01.T01:intron 40.0%
TCTCAAACCTTCCATCCTTA+AGG - contig594end:12502-12521 MsG0080048992.01.T01:CDS 40.0%
TGACTTCGGTTTATAGCAAG+AGG + contig594end:12402-12421 MsG0080048992.01.T01:intergenic 40.0%
TGCTGATACAGTCAACAATC+CGG + contig594end:12821-12840 MsG0080048992.01.T01:intergenic 40.0%
TGTTGTAGCCATGGCTATAA+TGG - contig594end:13705-13724 MsG0080048992.01.T01:CDS 40.0%
TTAGGCCTCAAAAGCAGAAT+CGG + contig594end:13806-13825 MsG0080048992.01.T01:intergenic 40.0%
TTGGAGTCAGAGTACAGATA+TGG + contig594end:11305-11324 MsG0080048992.01.T01:intergenic 40.0%
! AAGTTTCATGGTGGAAGAGT+TGG - contig594end:10379-10398 MsG0080048992.01.T01:three_prime_UTR 40.0%
! ACGCCTTCAATCAAAAGTGT+CGG - contig594end:10928-10947 MsG0080048992.01.T01:intron 40.0%
! AGTCAAATTTTGTCAGGCGA+AGG - contig594end:12417-12436 MsG0080048992.01.T01:CDS 40.0%
! AGTTTCATGGTGGAAGAGTT+GGG - contig594end:10380-10399 MsG0080048992.01.T01:three_prime_UTR 40.0%
! CGCCTGACAAAATTTGACTT+CGG + contig594end:12416-12435 MsG0080048992.01.T01:intergenic 40.0%
! CTCTTCCTTTTCCCTTCAAA+GGG - contig594end:10312-10331 MsG0080048992.01.T01:three_prime_UTR 40.0%
! GAAAATGTTGTTGTTGGTGG+TGG - contig594end:10451-10470 MsG0080048992.01.T01:CDS 40.0%
! GTACTATAGCATAGCGGAAT+TGG - contig594end:12166-12185 MsG0080048992.01.T01:intron 40.0%
! GTGATGTTGGTGAAAGAGAT+TGG - contig594end:10476-10495 MsG0080048992.01.T01:CDS 40.0%
! TCTAAAGTGGGCATACCTTA+AGG + contig594end:12520-12539 MsG0080048992.01.T01:intergenic 40.0%
! TCTCATTTGTTGGCATTCGT+TGG - contig594end:13835-13854 MsG0080048992.01.T01:CDS 40.0%
! TCTCTGTCTTGCCTCTTTTT+GGG - contig594end:13729-13748 MsG0080048992.01.T01:CDS 40.0%
! TGGTACCTCTGAACCAATTT+TGG - contig594end:12991-13010 MsG0080048992.01.T01:intron 40.0%
! TTTACAGGTTGTTGTTGCTC+CGG - contig594end:12269-12288 MsG0080048992.01.T01:CDS 40.0%
!! AACCTTCCACTTTTACTTGG+TGG - contig594end:10563-10582 MsG0080048992.01.T01:CDS 40.0%
!! ACACCGACACTTTTGATTGA+AGG + contig594end:10934-10953 MsG0080048992.01.T01:intergenic 40.0%
!! ACCTTCCACTTTTACTTGGT+GGG - contig594end:10564-10583 MsG0080048992.01.T01:CDS 40.0%
!! ACTTGGTGTGTTGATTGCAA+AGG - contig594end:11759-11778 MsG0080048992.01.T01:CDS 40.0%
!! CTCAACCTTCCACTTTTACT+TGG - contig594end:10560-10579 MsG0080048992.01.T01:CDS 40.0%
!! GAGCAGTATCATTGACTCTT+TGG - contig594end:13242-13261 MsG0080048992.01.T01:intron 40.0%
!!! GTGTTGATTGCAAAGGCTTT+TGG - contig594end:11766-11785 MsG0080048992.01.T01:CDS 40.0%
AAACCGCTTGTGTGCCAAAT+TGG + contig594end:13290-13309 MsG0080048991.01.T01:intergenic 45.0%
AACATAATCCCACCAAGTGC+TGG + contig594end:11540-11559 MsG0080048991.01.T01:intergenic 45.0%
AAGTGGGCATACCTTAAGGA+TGG + contig594end:12516-12535 MsG0080048992.01.T01:intergenic 45.0%
ACAGAGACCCATTATAGCCA+TGG + contig594end:13716-13735 MsG0080048992.01.T01:intergenic 45.0%
AGAAGAAGACCAAGTGTCAC+CGG + contig594end:12291-12310 MsG0080048992.01.T01:intergenic 45.0%
ATGGCTACAACAGAACATGC+AGG + contig594end:13697-13716 MsG0080048992.01.T01:intergenic 45.0%
CAGAGATGGCTAGGAAATGT+AGG - contig594end:13888-13907 MsG0080048992.01.T01:CDS 45.0%
CAGGTCAGTGTTGTCAATCA+CGG + contig594end:12215-12234 MsG0080048992.01.T01:intergenic 45.0%
CCATTGAAAAAGGAGAGAGG+GGG + contig594end:10210-10229 MsG0080048992.01.T01:intergenic 45.0%
CTGCCTTCACCTTAGGATAT+TGG - contig594end:12478-12497 MsG0080048992.01.T01:CDS 45.0%
GAGTTATATGCTCCAGCACT+TGG - contig594end:11525-11544 MsG0080048992.01.T01:intron 45.0%
GCAATCAACACACCAAGTAC+AGG + contig594end:11757-11776 MsG0080048992.01.T01:intergenic 45.0%
GCCATTGAAAAAGGAGAGAG+GGG + contig594end:10211-10230 MsG0080048992.01.T01:intergenic 45.0%
GGAGTGAATGGAGAGAAAAC+AGG + contig594end:10241-10260 MsG0080048992.01.T01:intergenic 45.0%
GGTGGGATTATGTTGTCCAT+TGG - contig594end:11546-11565 MsG0080048992.01.T01:intron 45.0%
TATATGCTCCAGCACTTGGT+GGG - contig594end:11529-11548 MsG0080048992.01.T01:intron 45.0%
TCCCTTCAAAGGGTCTCAAA+GGG - contig594end:10322-10341 MsG0080048992.01.T01:three_prime_UTR 45.0%
TGACTATTTGAACGCAGGCA+GGG - contig594end:11261-11280 MsG0080048992.01.T01:intron 45.0%
TGCATGTTCTGTTGTAGCCA+TGG - contig594end:13696-13715 MsG0080048992.01.T01:CDS 45.0%
TTATATGCTCCAGCACTTGG+TGG - contig594end:11528-11547 MsG0080048992.01.T01:intron 45.0%
TTCCCTTCAAAGGGTCTCAA+AGG - contig594end:10321-10340 MsG0080048992.01.T01:three_prime_UTR 45.0%
! CTCTGTCTTGCCTCTTTTTG+GGG - contig594end:13730-13749 MsG0080048992.01.T01:CDS 45.0%
! GCTCTTCCTTTTCCCTTCAA+AGG - contig594end:10311-10330 MsG0080048992.01.T01:three_prime_UTR 45.0%
! GTCTCTGTCTTGCCTCTTTT+TGG - contig594end:13728-13747 MsG0080048992.01.T01:CDS 45.0%
! TGAGACCCTTTGAAGGGAAA+AGG + contig594end:10320-10339 MsG0080048992.01.T01:intergenic 45.0%
!! AATGTTGTTGTTGGTGGTGG+TGG - contig594end:10454-10473 MsG0080048992.01.T01:CDS 45.0%
!! ACCCTTTGAGACCCTTTGAA+GGG + contig594end:10326-10345 MsG0080048992.01.T01:intergenic 45.0%
!! AGAGGCACTATAGCACTACA+AGG - contig594end:12071-12090 MsG0080048992.01.T01:intron 45.0%
!! ATAGCAACAAAGGGCATCAC+AGG + contig594end:12351-12370 MsG0080048992.01.T01:intergenic 45.0%
!! CAGAACCGATTCTGCTTTTG+AGG - contig594end:13798-13817 MsG0080048992.01.T01:CDS 45.0%
!! CCTTCCACTTTTACTTGGTG+GGG - contig594end:10565-10584 MsG0080048992.01.T01:CDS 45.0%
!! CTTGCCTCTTTTTGGGGAAA+GGG - contig594end:13736-13755 MsG0080048992.01.T01:CDS 45.0%
!! GAGTGGATTGCGGAAAATAG+CGG - contig594end:13035-13054 MsG0080048992.01.T01:intron 45.0%
!! TCTTGCCTCTTTTTGGGGAA+AGG - contig594end:13735-13754 MsG0080048992.01.T01:CDS 45.0%
!! TGTGCTGACTATTTGAACGC+AGG - contig594end:11256-11275 MsG0080048992.01.T01:intron 45.0%
AAGTGTGGAGCTCTGCATTC+CGG + contig594end:13626-13645 MsG0080048992.01.T01:intergenic 50.0%
CCCCACCAAGTAAAAGTGGA+AGG + contig594end:10568-10587 MsG0080048992.01.T01:intergenic 50.0%
CTCCTGAAACACAAGCTGTG+AGG + contig594end:11822-11841 MsG0080048992.01.T01:intergenic 50.0%
CTGACTATTTGAACGCAGGC+AGG - contig594end:11260-11279 MsG0080048992.01.T01:intron 50.0%
CTTCAAAGGGTCTCAAAGGG+TGG - contig594end:10325-10344 MsG0080048992.01.T01:three_prime_UTR 50.0%
GACATGGCAACTGCATCAAC+CGG + contig594end:11979-11998 MsG0080048992.01.T01:intergenic 50.0%
GCAGCCCAACAAGAATGAGA+AGG + contig594end:12786-12805 MsG0080048992.01.T01:intergenic 50.0%
GCTACAACAGAACATGCAGG+AGG + contig594end:13694-13713 MsG0080048992.01.T01:intergenic 50.0%
GGAACCCCACCAAGTAAAAG+TGG + contig594end:10572-10591 MsG0080048992.01.T01:intergenic 50.0%
GGGCATACCTTAAGGATGGA+AGG + contig594end:12512-12531 MsG0080048992.01.T01:intergenic 50.0%
GGTCCAATTTGGCACACAAG+CGG - contig594end:13284-13303 MsG0080048992.01.T01:intron 50.0%
GTCCAACACGTGTTCGACAT+TGG + contig594end:10900-10919 MsG0080048992.01.T01:intergenic 50.0%
GTCCTCACAGCTTGTGTTTC+AGG - contig594end:11817-11836 MsG0080048992.01.T01:CDS 50.0%
TATATCAGGCCCCTCTGCTA+TGG - contig594end:11099-11118 MsG0080048992.01.T01:intron 50.0%
TGCCAATGTCGAACACGTGT+TGG - contig594end:10895-10914 MsG0080048992.01.T01:intron 50.0%
TTGTCACAGGCAGGAAGAAC+AGG - contig594end:13576-13595 MsG0080048992.01.T01:intron 50.0%
!! AGGCCTTTGCCACTTTCCAT+TGG - contig594end:11706-11725 MsG0080048992.01.T01:intron 50.0%
!! CACCCTTTGAGACCCTTTGA+AGG + contig594end:10327-10346 MsG0080048992.01.T01:intergenic 50.0%
!! GCAGAATCGGTTCTGAGTGA+AGG + contig594end:13793-13812 MsG0080048992.01.T01:intergenic 50.0%
!! TCGGTGTTAAAGGGACACCT+AGG - contig594end:10947-10966 MsG0080048992.01.T01:intron 50.0%
!!! AGGCAGGGTATTTTGACAGC+AGG - contig594end:11276-11295 MsG0080048992.01.T01:intron 50.0%
!!! CCCCCTCTCTCCTTTTTCAA+TGG - contig594end:10207-10226 MsG0080048992.01.T01:three_prime_UTR 50.0%
AGCGAGTGCGTAAGAGAGGT+TGG + contig594end:10294-10313 MsG0080048992.01.T01:intergenic 55.0%
ATGCAGAGCTCCACACTTGC+AGG - contig594end:13628-13647 MsG0080048992.01.T01:intron 55.0%
CATGCTGCTGCCTTCACCTT+AGG - contig594end:12471-12490 MsG0080048992.01.T01:CDS 55.0%
GAAGAGCGAGTGCGTAAGAG+AGG + contig594end:10298-10317 MsG0080048992.01.T01:intergenic 55.0%
GGGGTGTGAAGAGGAATGAG+GGG + contig594end:10191-10210 MsG0080048992.01.T01:intergenic 55.0%
GGGTGTGAAGAGGAATGAGG+GGG + contig594end:10190-10209 MsG0080048992.01.T01:intergenic 55.0%
GGTGTGAAGAGGAATGAGGG+GGG + contig594end:10189-10208 MsG0080048992.01.T01:intergenic 55.0%
GTCAGGCGAAGGTCTTCGAT+TGG - contig594end:12428-12447 MsG0080048992.01.T01:CDS 55.0%
GTTGTTGCTCCGGTGACACT+TGG - contig594end:12279-12298 MsG0080048992.01.T01:CDS 55.0%
TGCAAGAAGGCCTGCAAGTG+TGG + contig594end:13641-13660 MsG0080048992.01.T01:intergenic 55.0%
! AGGGGGTGTGAAGAGGAATG+AGG + contig594end:10193-10212 MsG0080048992.01.T01:intergenic 55.0%
! GGGGGTGTGAAGAGGAATGA+GGG + contig594end:10192-10211 MsG0080048992.01.T01:intergenic 55.0%
!! GTTGGTGGTGGTGGTGATGT+TGG - contig594end:10463-10482 MsG0080048992.01.T01:CDS 55.0%
GGCAGGAAGAACAGGTGAGC+AGG - contig594end:13584-13603 MsG0080048992.01.T01:intron 60.0%
! AGGAGAGAGGGGGTGTGAAG+AGG + contig594end:10200-10219 MsG0080048992.01.T01:intergenic 60.0%
! GGGCTGCTCTGTACTGATGC+CGG - contig594end:12799-12818 MsG0080048992.01.T01:intron 60.0%
GTCGGCACATCTGTGACCGC+TGG - contig594end:11161-11180 MsG0080048992.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
contig594end gene 10135 14106 10135 ID=MsG0080048992.01;Name=MsG0080048992.01
contig594end mRNA 10135 14106 10135 ID=MsG0080048992.01.T01;Parent=MsG0080048992.01;Name=MsG0080048992.01.T01;_AED=0.50;_eAED=0.50;_QI=91|1|1|1|1|1|5|281|415
contig594end exon 13660 14106 13660 ID=MsG0080048992.01.T01:exon:10983;Parent=MsG0080048992.01.T01
contig594end exon 12631 12726 12631 ID=MsG0080048992.01.T01:exon:10984;Parent=MsG0080048992.01.T01
contig594end exon 12227 12533 12227 ID=MsG0080048992.01.T01:exon:10985;Parent=MsG0080048992.01.T01
contig594end exon 11718 11965 11718 ID=MsG0080048992.01.T01:exon:10986;Parent=MsG0080048992.01.T01
contig594end exon 10135 10656 10135 ID=MsG0080048992.01.T01:exon:10987;Parent=MsG0080048992.01.T01
contig594end five_prime_UTR 14016 14106 14016 ID=MsG0080048992.01.T01:five_prime_utr;Parent=MsG0080048992.01.T01
contig594end CDS 13660 14015 13660 ID=MsG0080048992.01.T01:cds;Parent=MsG0080048992.01.T01
contig594end CDS 12631 12726 12631 ID=MsG0080048992.01.T01:cds;Parent=MsG0080048992.01.T01
contig594end CDS 12227 12533 12227 ID=MsG0080048992.01.T01:cds;Parent=MsG0080048992.01.T01
contig594end CDS 11718 11965 11718 ID=MsG0080048992.01.T01:cds;Parent=MsG0080048992.01.T01
contig594end CDS 10416 10656 10416 ID=MsG0080048992.01.T01:cds;Parent=MsG0080048992.01.T01
contig594end three_prime_UTR 10135 10415 10135 ID=MsG0080048992.01.T01:three_prime_utr;Parent=MsG0080048992.01.T01
Gene Sequence

>MsG0080048992.01.T01

ATGGCTTCCATTCCTGTTTTCTCTCCATTCACTCCCATGAAACAAAAGCATAAACCTCTATCTTTCCAACCTCTCTTACGCACTCGCTCTTCCTTTTCCCTTCAAAGGGTCTCAAAGGGTGGCTCAATATCGAGTTTTGCTTGCTCAACTTCTAAGTTTCATGGTGGAAGAGTTGGGTTTAACCATATTGAAGGGAAATCTTCGTTTCTTAAATTTGGTGTTGATGAAAATGTTGTTGTTGGTGGTGGTGGTGATGTTGGTGAAAGAGATTGGTCTCAGATTTTGTCTGCATTGCTTCCTTTTGTTGTTGCTGTTACTGCTGTTGCTGCTCTTTCTCAACCTTCCACTTTTACTTGGGTATCTAAAGAGTTATATGCTCCAGCACTTGGTGGGATTATGTTGTCCATTGGGATAGGACTATCTATGGAAGATTTTGCTCTTGCATTCAAAAGGCCTTTGCCACTTTCCATTGGATTTATTGCTCAATATGTACTGAAACCTGTACTTGGTGTGTTGATTGCAAAGGCTTTTGGCTTGCCTAGAATGTTTTATGCAGGCTTTGTCCTCACAGCTTGTGTTTCAGGAGCTCAGTTATCTAGCTATGCAAGCTTTATAAGCAAAGGGGATGTAGCCTTATGCATTGTTCTTACAAGCTATACCACTATTGCGTCGGTTATTGTTACGCCTTTATTAACCGGTCTTCTAATTGGATCTGTTGTGCCGGTTGATGCAGTTGCCATGTCAAAGTCAATATTACAGGTTGTTGTTGCTCCGGTGACACTTGGTCTTCTTCTCAATACGTATGCAAAGCCAGTTGTATCTATTCTTCGACCTGTGATGCCCTTTGTTGCTATGATTTGTACTTCATTGTGCATTGGCAGCCCTCTTGCTATAAACCGAAGTCAAATTTTGTCAGGCGAAGGTCTTCGATTGGTTGCTCCAGTATTAATATTTCATGCTGCTGCCTTCACCTTAGGATATTGGTTCTCAAACCTTCCATCCTTAAGGCAGGAAGAACAGGTGAGCAGGACAATTTCATTATGCACCGGAATGCAGAGCTCCACACTTGCAGGCCTTCTTGCAACTCAATTTTTGGGAAGTAGTCAAGCAGTTCCTCCTGCATGTTCTGTTGTAGCCATGGCTATAATGGGTCTCTGTCTTGCCTCTTTTTGGGGAAAGGGTTTTGAAATTAAAAACCTGTTGTCATCATTACCTTCACTCAGAACCGATTCTGCTTTTGAGGCCTAA

Protein sequence

>MsG0080048992.01.T01

MASIPVFSPFTPMKQKHKPLSFQPLLRTRSSFSLQRVSKGGSISSFACSTSKFHGGRVGFNHIEGKSSFLKFGVDENVVVGGGGDVGERDWSQILSALLPFVVAVTAVAALSQPSTFTWVSKELYAPALGGIMLSIGIGLSMEDFALAFKRPLPLSIGFIAQYVLKPVLGVLIAKAFGLPRMFYAGFVLTACVSGAQLSSYASFISKGDVALCIVLTSYTTIASVIVTPLLTGLLIGSVVPVDAVAMSKSILQVVVAPVTLGLLLNTYAKPVVSILRPVMPFVAMICTSLCIGSPLAINRSQILSGEGLRLVAPVLIFHAAAFTLGYWFSNLPSLRQEEQVSRTISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVVAMAIMGLCLASFWGKGFEIKNLLSSLPSLRTDSAFEA*