Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000096.01.T01 | XP_003589380.1 | 99 | 100 | 1 | 0 | 1 | 100 | 107 | 206 | 4.33E-62 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000096.01.T01 | Q9SVR0 | 76 | 100 | 24 | 0 | 1 | 100 | 107 | 206 | 5.15E-50 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000096.01.T01 | B7FMG6 | 99.000 | 100 | 1 | 0 | 1 | 100 | 107 | 206 | 2.07e-62 | 197 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048040.01 | MsG0180000096.01 | 0.809813 | 1.571614e-50 | 9.319801e-48 |
| MsG0080048922.01 | MsG0180000096.01 | 0.817526 | 3.150281e-52 | 2.299694e-49 |
| MsG0080048933.01 | MsG0180000096.01 | 0.802288 | 6.023916e-49 | 2.939659e-46 |
| MsG0180000096.01 | MsG0180000118.01 | 0.906906 | 8.988181e-81 | 1.555287e-76 |
| MsG0180000096.01 | MsG0180000698.01 | 0.802971 | 4.355800e-49 | 2.162741e-46 |
| MsG0180000096.01 | MsG0180001169.01 | 0.900800 | 5.095682e-78 | 6.690973e-74 |
| MsG0180000096.01 | MsG0180001588.01 | 0.813648 | 2.301050e-51 | 1.511284e-48 |
| MsG0180000096.01 | MsG0180001829.01 | 0.889274 | 2.805938e-73 | 2.248440e-69 |
| MsG0180000096.01 | MsG0180001837.01 | 0.872489 | 3.058491e-67 | 1.282409e-63 |
| MsG0180000096.01 | MsG0180003258.01 | 0.830490 | 2.852463e-55 | 3.009602e-52 |
| MsG0180000096.01 | MsG0180003897.01 | 0.864369 | 1.277721e-64 | 4.002036e-61 |
| MsG0180000096.01 | MsG0180003905.01 | 0.801231 | 9.925431e-49 | 4.715446e-46 |
| MsG0180000096.01 | MsG0180004064.01 | 0.902727 | 7.210585e-79 | 1.035216e-74 |
| MsG0180000096.01 | MsG0180004503.01 | 0.829223 | 5.806019e-55 | 5.905398e-52 |
| MsG0180000096.01 | MsG0180004829.01 | 0.824757 | 6.790699e-54 | 6.071016e-51 |
| MsG0180000096.01 | MsG0180005321.01 | 0.804279 | 2.331233e-49 | 1.197076e-46 |
| MsG0180000096.01 | MsG0180005384.01 | 0.897272 | 1.650685e-76 | 1.850502e-72 |
| MsG0180000096.01 | MsG0180005573.01 | 0.814390 | 1.578691e-51 | 1.057981e-48 |
| MsG0180000096.01 | MsG0180005839.01 | -0.802023 | 6.827924e-49 | 3.309464e-46 |
| MsG0180000096.01 | MsG0280006301.01 | 0.865650 | 5.063235e-65 | 1.660104e-61 |
| MsG0180000096.01 | MsG0280006629.01 | 0.811715 | 6.094689e-51 | 3.800229e-48 |
| MsG0180000096.01 | MsG0280006717.01 | 0.831346 | 1.758456e-55 | 1.903023e-52 |
| MsG0180000096.01 | MsG0280006747.01 | 0.890871 | 6.658147e-74 | 5.699668e-70 |
| MsG0180000096.01 | MsG0280007055.01 | 0.906263 | 1.787829e-80 | 3.003101e-76 |
| MsG0180000096.01 | MsG0280007084.01 | 0.863921 | 1.762742e-64 | 5.434915e-61 |
| MsG0180000096.01 | MsG0280007504.01 | 0.809770 | 1.605299e-50 | 9.509224e-48 |
| MsG0180000096.01 | MsG0280007606.01 | 0.810934 | 9.003926e-51 | 5.500283e-48 |
| MsG0180000096.01 | MsG0280007995.01 | 0.845742 | 3.359729e-59 | 5.654647e-56 |
| MsG0180000096.01 | MsG0280010519.01 | 0.814191 | 1.746880e-51 | 1.164304e-48 |
| MsG0180000096.01 | MsG0380015402.01 | 0.871133 | 8.621057e-67 | 3.438769e-63 |
| MsG0180000096.01 | MsG0380015446.01 | 0.845688 | 3.475364e-59 | 5.838904e-56 |
| MsG0180000096.01 | MsG0380015766.01 | 0.802775 | 4.779617e-49 | 2.361601e-46 |
| MsG0180000096.01 | MsG0380015857.01 | 0.942506 | 6.373051e-102 | 8.029235e-97 |
| MsG0180000096.01 | MsG0380016031.01 | 0.834944 | 2.235406e-56 | 2.693502e-53 |
| MsG0180000096.01 | MsG0380016653.01 | 0.815719 | 8.005047e-52 | 5.561933e-49 |
| MsG0180000096.01 | MsG0380016678.01 | 0.819453 | 1.152245e-52 | 8.870765e-50 |
| MsG0180000096.01 | MsG0380016732.01 | 0.820216 | 7.710672e-53 | 6.063599e-50 |
| MsG0180000096.01 | MsG0380016744.01 | 0.859796 | 3.227753e-63 | 8.630475e-60 |
| MsG0180000096.01 | MsG0380016760.01 | 0.903073 | 5.051833e-79 | 7.363267e-75 |
| MsG0180000096.01 | MsG0380017155.01 | 0.857529 | 1.534112e-62 | 3.797974e-59 |
| MsG0180000096.01 | MsG0380017385.01 | -0.836475 | 9.158909e-57 | 1.155502e-53 |
| MsG0180000096.01 | MsG0380017588.01 | 0.800805 | 1.213218e-48 | 5.701783e-46 |
| MsG0180000096.01 | MsG0380018056.01 | 0.823650 | 1.235901e-53 | 1.070628e-50 |
| MsG0180000096.01 | MsG0480018164.01 | 0.891377 | 4.200124e-74 | 3.673481e-70 |
| MsG0180000096.01 | MsG0480019165.01 | 0.857477 | 1.589059e-62 | 3.927173e-59 |
| MsG0180000096.01 | MsG0480020796.01 | 0.843667 | 1.216727e-58 | 1.917591e-55 |
| MsG0180000096.01 | MsG0480020911.01 | 0.868666 | 5.509523e-66 | 2.009574e-62 |
| MsG0180000096.01 | MsG0480021279.01 | 0.866581 | 2.568630e-65 | 8.701238e-62 |
| MsG0180000096.01 | MsG0480021417.01 | 0.855737 | 5.161690e-62 | 1.203567e-58 |
| MsG0180000096.01 | MsG0480022006.01 | 0.925708 | 1.271057e-90 | 5.752609e-86 |
| MsG0180000096.01 | MsG0480022302.01 | 0.854336 | 1.317128e-61 | 2.931573e-58 |
| MsG0180000096.01 | MsG0480022363.01 | 0.808411 | 3.137792e-50 | 1.792867e-47 |
| MsG0180000096.01 | MsG0480022789.01 | 0.842965 | 1.873697e-58 | 2.887832e-55 |
| MsG0180000096.01 | MsG0480022955.01 | 0.844850 | 5.855441e-59 | 9.576609e-56 |
| MsG0180000096.01 | MsG0480023380.01 | 0.899994 | 1.140985e-77 | 1.445694e-73 |
| MsG0180000096.01 | MsG0480023774.01 | 0.918439 | 1.556620e-86 | 4.736943e-82 |
| MsG0180000096.01 | MsG0480023931.01 | 0.840003 | 1.129282e-57 | 1.587239e-54 |
| MsG0180000096.01 | MsG0480023941.01 | 0.848074 | 7.725457e-60 | 1.400916e-56 |
| MsG0180000096.01 | MsG0480023996.01 | 0.837851 | 4.071985e-57 | 5.357552e-54 |
| MsG0180000096.01 | MsG0580024059.01 | 0.832046 | 1.181607e-55 | 1.305609e-52 |
| MsG0180000096.01 | MsG0580024481.01 | 0.872504 | 3.023170e-67 | 1.268303e-63 |
| MsG0180000096.01 | MsG0580024540.01 | 0.840646 | 7.671095e-58 | 1.099714e-54 |
| MsG0180000096.01 | MsG0580024738.01 | 0.860476 | 2.011375e-63 | 5.505493e-60 |
| MsG0180000096.01 | MsG0580024894.01 | 0.831437 | 1.670389e-55 | 1.812564e-52 |
| MsG0180000096.01 | MsG0580026029.01 | 0.830681 | 2.560715e-55 | 2.717302e-52 |
| MsG0180000096.01 | MsG0580026749.01 | 0.808302 | 3.310419e-50 | 1.886093e-47 |
| MsG0180000096.01 | MsG0580027135.01 | 0.803069 | 4.156849e-49 | 2.069066e-46 |
| MsG0180000096.01 | MsG0680031368.01 | 0.817410 | 3.345415e-52 | 2.434518e-49 |
| MsG0180000096.01 | MsG0680035611.01 | 0.859840 | 3.130543e-63 | 8.383576e-60 |
| MsG0180000096.01 | MsG0680035905.01 | 0.809262 | 2.064127e-50 | 1.206259e-47 |
| MsG0180000096.01 | MsG0780036859.01 | 0.806176 | 9.341436e-50 | 5.036661e-47 |
| MsG0180000096.01 | MsG0780037290.01 | 0.801477 | 8.840462e-49 | 4.226056e-46 |
| MsG0180000096.01 | MsG0780038383.01 | 0.856708 | 2.680289e-62 | 6.453413e-59 |
| MsG0180000096.01 | MsG0780039937.01 | 0.857387 | 1.690299e-62 | 4.164430e-59 |
| MsG0180000096.01 | MsG0780040594.01 | 0.818717 | 1.694543e-52 | 1.278210e-49 |
| MsG0180000096.01 | MsG0780040660.01 | 0.827296 | 1.692270e-54 | 1.627030e-51 |
| MsG0180000096.01 | MsG0780041240.01 | 0.832114 | 1.136741e-55 | 1.258346e-52 |
| MsG0180000096.01 | MsG0780041311.01 | 0.812848 | 3.447624e-51 | 2.215740e-48 |
| MsG0180000096.01 | MsG0780041522.01 | 0.852044 | 5.975565e-61 | 1.233049e-57 |
| MsG0180000096.01 | MsG0780041790.01 | 0.871397 | 7.051600e-67 | 2.840358e-63 |
| MsG0180000096.01 | MsG0880041941.01 | 0.820375 | 7.091139e-53 | 5.601330e-50 |
| MsG0180000096.01 | MsG0880042517.01 | 0.821034 | 5.004274e-53 | 4.026129e-50 |
| MsG0180000096.01 | MsG0880043076.01 | 0.829737 | 4.355160e-55 | 4.496952e-52 |
| MsG0180000096.01 | MsG0880044204.01 | 0.840176 | 1.018091e-57 | 1.438550e-54 |
| MsG0180000096.01 | MsG0880045761.01 | -0.822686 | 2.073897e-53 | 1.748209e-50 |
| MsG0180000096.01 | MsG0880045836.01 | 0.874722 | 5.407867e-68 | 2.460162e-64 |
| MsG0180000096.01 | MsG0880046220.01 | 0.828890 | 6.989683e-55 | 7.038724e-52 |
| MsG0180000096.01 | MsG0880046486.01 | 0.833017 | 6.787739e-56 | 7.719536e-53 |
| MsG0180000096.01 | MsG0880047090.01 | 0.843020 | 1.811121e-58 | 2.796158e-55 |
| MsG0180000096.01 | MsG0880047310.01 | 0.833876 | 4.144508e-56 | 4.836449e-53 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000096.01.T01 | MTR_1g023590 | 99.000 | 100 | 1 | 0 | 1 | 100 | 107 | 206 | 5.24e-66 | 197 |
| MsG0180000096.01.T01 | MTR_7g057770 | 90.000 | 100 | 10 | 0 | 1 | 100 | 107 | 206 | 1.34e-59 | 181 |
| MsG0180000096.01.T01 | MTR_5g083790 | 85.000 | 100 | 15 | 0 | 1 | 100 | 107 | 206 | 8.97e-56 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000096.01.T01 | AT4G13170 | 76.000 | 100 | 24 | 0 | 1 | 100 | 107 | 206 | 5.25e-51 | 159 |
| MsG0180000096.01.T01 | AT5G48760 | 76.000 | 100 | 24 | 0 | 1 | 100 | 107 | 206 | 1.84e-50 | 158 |
| MsG0180000096.01.T01 | AT5G48760 | 76.000 | 100 | 24 | 0 | 1 | 100 | 107 | 206 | 1.84e-50 | 158 |
| MsG0180000096.01.T01 | AT3G07110 | 77.000 | 100 | 23 | 0 | 1 | 100 | 107 | 206 | 2.98e-50 | 157 |
| MsG0180000096.01.T01 | AT3G07110 | 76.238 | 101 | 23 | 1 | 1 | 100 | 107 | 207 | 1.54e-48 | 153 |
| MsG0180000096.01.T01 | AT3G24830 | 73.000 | 100 | 27 | 0 | 1 | 100 | 107 | 206 | 3.90e-48 | 152 |
Find 43 sgRNAs with CRISPR-Local
Find 53 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTATTATAAGGTTTAGTT+TGG | 0.304616 | 1:-1386403 | MsG0180000096.01.T01:three_prime_UTR |
| TTCCAGTAGTGTTGCCCCTT+TGG | 0.316652 | 1:-1386244 | MsG0180000096.01.T01:three_prime_UTR |
| GCTTGTTATTCTATGTTTGT+TGG | 0.318515 | 1:-1386339 | MsG0180000096.01.T01:three_prime_UTR |
| TATTTGTTAACATTATTATA+AGG | 0.320139 | 1:-1386413 | MsG0180000096.01.T01:three_prime_UTR |
| ACTATGAAGCTTATAGTTGT+TGG | 0.329462 | 1:-1386182 | MsG0180000096.01.T01:three_prime_UTR |
| CACCAAAGGGGCAACACTAC+TGG | 0.369640 | 1:+1386242 | None:intergenic |
| GGGAGCAAGGACTTCAAGTT+GGG | 0.380650 | 1:+1386452 | None:intergenic |
| TATAGGAGCTGGAGGATAAG+AGG | 0.397991 | 1:-1386566 | MsG0180000096.01.T01:intron |
| AATAACAAGCAAAACTGAAA+TGG | 0.403835 | 1:+1386352 | None:intergenic |
| ATATATGATGTTACACCAAA+GGG | 0.406117 | 1:+1386229 | None:intergenic |
| GAGGAAGGAACGCGCAGGTT+TGG | 0.417217 | 1:-1386547 | MsG0180000096.01.T01:CDS |
| TAGGGTGTTGAGACTTCAAA+AGG | 0.434162 | 1:-1386744 | MsG0180000096.01.T01:CDS |
| ATCCTCTTGATCTTGTCATA+TGG | 0.437541 | 1:+1386883 | None:intergenic |
| CGGGAGCAAGGACTTCAAGT+TGG | 0.439216 | 1:+1386451 | None:intergenic |
| AATAGTACTCAGTACTTAAC+GGG | 0.449959 | 1:+1386432 | None:intergenic |
| AAATAGTACTCAGTACTTAA+CGG | 0.452401 | 1:+1386431 | None:intergenic |
| GGTTCTTACTTGAGAGCATC+GGG | 0.471713 | 1:+1386853 | None:intergenic |
| AGAAGCTGCTCAATAAATTG+AGG | 0.480348 | 1:-1386512 | MsG0180000096.01.T01:CDS |
| TCGCGCGATGAAGGTCTATG+AGG | 0.510907 | 1:-1386917 | None:intergenic |
| GAAGCTGCTCAATAAATTGA+GGG | 0.519049 | 1:-1386511 | MsG0180000096.01.T01:CDS |
| AACACTACTGGAAAGTAAGT+TGG | 0.529696 | 1:+1386254 | None:intergenic |
| TGGTTCTTACTTGAGAGCAT+CGG | 0.539745 | 1:+1386852 | None:intergenic |
| TTCTTGTTTATAGGAGCTGG+AGG | 0.546787 | 1:-1386574 | MsG0180000096.01.T01:intron |
| GGACACAAATACTGCTTGCT+CGG | 0.550212 | 1:-1386722 | MsG0180000096.01.T01:CDS |
| CTCAGTACTTAACGGGAGCA+AGG | 0.561409 | 1:+1386439 | None:intergenic |
| AGTTGTCATCAGAGGTTGGA+TGG | 0.565112 | 1:-1386697 | MsG0180000096.01.T01:CDS |
| TTGATCTTGTCATATGGAGG+AGG | 0.574582 | 1:+1386889 | None:intergenic |
| CTCCATATGACAAGATCAAG+AGG | 0.577162 | 1:-1386885 | MsG0180000096.01.T01:CDS |
| TCAGAGGTTGGATGGAACTA+CGG | 0.586349 | 1:-1386689 | MsG0180000096.01.T01:CDS |
| AATATATGATGTTACACCAA+AGG | 0.587013 | 1:+1386228 | None:intergenic |
| GGAGCTGGAGGATAAGAGGA+AGG | 0.587458 | 1:-1386562 | MsG0180000096.01.T01:CDS |
| GAACTACGGTGGCATCATCA+AGG | 0.590785 | 1:-1386675 | MsG0180000096.01.T01:intron |
| GGACAGTTGTCATCAGAGGT+TGG | 0.592395 | 1:-1386701 | MsG0180000096.01.T01:CDS |
| CTCTTGATCTTGTCATATGG+AGG | 0.593959 | 1:+1386886 | None:intergenic |
| GCTCGGACAGTTGTCATCAG+AGG | 0.597789 | 1:-1386705 | MsG0180000096.01.T01:CDS |
| AGGGTGTTGAGACTTCAAAA+GGG | 0.620018 | 1:-1386743 | MsG0180000096.01.T01:CDS |
| ATATGACAAGATCAAGAGGA+TGG | 0.634497 | 1:-1386881 | MsG0180000096.01.T01:CDS |
| GGAGCAAGGACTTCAAGTTG+GGG | 0.640419 | 1:+1386453 | None:intergenic |
| AGCAAGGACTTCAAGTTGGG+GGG | 0.650449 | 1:+1386455 | None:intergenic |
| GATAAGAGGAAGGAACGCGC+AGG | 0.659068 | 1:-1386552 | MsG0180000096.01.T01:CDS |
| GAGCAAGGACTTCAAGTTGG+GGG | 0.688692 | 1:+1386454 | None:intergenic |
| TATATGATGTTACACCAAAG+GGG | 0.699513 | 1:+1386230 | None:intergenic |
| GAGGTTGGATGGAACTACGG+TGG | 0.706495 | 1:-1386686 | MsG0180000096.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTGTTAACATTATTATA+AGG | - | Chr1:1386666-1386685 | MsG0180000096.01.T01:intron | 10.0% |
| !! | CTGTAAATTATACAATAAAA+TGG | + | Chr1:1386250-1386269 | None:intergenic | 15.0% |
| !! | CATTATTATAAGGTTTAGTT+TGG | - | Chr1:1386676-1386695 | MsG0180000096.01.T01:CDS | 20.0% |
| !!! | ACTTTTGTTGTTGAATTAAA+AGG | - | Chr1:1386275-1386294 | MsG0180000096.01.T01:three_prime_UTR | 20.0% |
| !!! | GTGATTTTTTTTGTTTTGTT+TGG | - | Chr1:1386426-1386445 | MsG0180000096.01.T01:exon | 20.0% |
| !!! | GTGGTTTTGAATTTTTTAAT+TGG | - | Chr1:1386481-1386500 | MsG0180000096.01.T01:CDS | 20.0% |
| !!! | TTAATTGGTTTCTTGTTTAT+AGG | - | Chr1:1386496-1386515 | MsG0180000096.01.T01:CDS | 20.0% |
| !!! | TTCCAAAATTGTCATTTTTA+AGG | + | Chr1:1386767-1386786 | None:intergenic | 20.0% |
| ! | AAATAGTACTCAGTACTTAA+CGG | + | Chr1:1386651-1386670 | None:intergenic | 25.0% |
| ! | AATAACAAGCAAAACTGAAA+TGG | + | Chr1:1386730-1386749 | None:intergenic | 25.0% |
| ! | AATATATGATGTTACACCAA+AGG | + | Chr1:1386854-1386873 | None:intergenic | 25.0% |
| ! | ATATATGATGTTACACCAAA+GGG | + | Chr1:1386853-1386872 | None:intergenic | 25.0% |
| ! | TGAATGAGTGAATGAAATTA+GGG | - | Chr1:1386317-1386336 | MsG0180000096.01.T01:three_prime_UTR | 25.0% |
| !! | GAATTTGATCAACAATTTTG+TGG | - | Chr1:1386462-1386481 | MsG0180000096.01.T01:CDS | 25.0% |
| !! | GACCTTAAAAATGACAATTT+TGG | - | Chr1:1386762-1386781 | MsG0180000096.01.T01:intron | 25.0% |
| AATAGTACTCAGTACTTAAC+GGG | + | Chr1:1386650-1386669 | None:intergenic | 30.0% | |
| ACTATGAAGCTTATAGTTGT+TGG | - | Chr1:1386897-1386916 | MsG0180000096.01.T01:CDS | 30.0% | |
| CTGAATGAGTGAATGAAATT+AGG | - | Chr1:1386316-1386335 | MsG0180000096.01.T01:three_prime_UTR | 30.0% | |
| TATATGATGTTACACCAAAG+GGG | + | Chr1:1386852-1386871 | None:intergenic | 30.0% | |
| !! | GCTTGTTATTCTATGTTTGT+TGG | - | Chr1:1386740-1386759 | MsG0180000096.01.T01:CDS | 30.0% |
| AACACTACTGGAAAGTAAGT+TGG | + | Chr1:1386828-1386847 | None:intergenic | 35.0% | |
| AGAAGCTGCTCAATAAATTG+AGG | - | Chr1:1386567-1386586 | MsG0180000096.01.T01:intron | 35.0% | |
| ATATGACAAGATCAAGAGGA+TGG | - | Chr1:1386198-1386217 | MsG0180000096.01.T01:three_prime_UTR | 35.0% | |
| ATCCTCTTGATCTTGTCATA+TGG | + | Chr1:1386199-1386218 | None:intergenic | 35.0% | |
| GAAGCTGCTCAATAAATTGA+GGG | - | Chr1:1386568-1386587 | MsG0180000096.01.T01:intron | 35.0% | |
| CTCCATATGACAAGATCAAG+AGG | - | Chr1:1386194-1386213 | MsG0180000096.01.T01:three_prime_UTR | 40.0% | |
| CTCTTGATCTTGTCATATGG+AGG | + | Chr1:1386196-1386215 | None:intergenic | 40.0% | |
| TTGATCTTGTCATATGGAGG+AGG | + | Chr1:1386193-1386212 | None:intergenic | 40.0% | |
| ! | GGTTTCTTGTTTATAGGAGC+TGG | - | Chr1:1386502-1386521 | MsG0180000096.01.T01:CDS | 40.0% |
| ! | TGGTTCTTACTTGAGAGCAT+CGG | + | Chr1:1386230-1386249 | None:intergenic | 40.0% |
| ! | TTCTTGTTTATAGGAGCTGG+AGG | - | Chr1:1386505-1386524 | MsG0180000096.01.T01:CDS | 40.0% |
| !! | AGGGTGTTGAGACTTCAAAA+GGG | - | Chr1:1386336-1386355 | MsG0180000096.01.T01:three_prime_UTR | 40.0% |
| !! | TAGGGTGTTGAGACTTCAAA+AGG | - | Chr1:1386335-1386354 | MsG0180000096.01.T01:three_prime_UTR | 40.0% |
| AGTTGTCATCAGAGGTTGGA+TGG | - | Chr1:1386382-1386401 | MsG0180000096.01.T01:three_prime_UTR | 45.0% | |
| GGACACAAATACTGCTTGCT+CGG | - | Chr1:1386357-1386376 | MsG0180000096.01.T01:three_prime_UTR | 45.0% | |
| TATAGGAGCTGGAGGATAAG+AGG | - | Chr1:1386513-1386532 | MsG0180000096.01.T01:CDS | 45.0% | |
| TCAGAGGTTGGATGGAACTA+CGG | - | Chr1:1386390-1386409 | MsG0180000096.01.T01:three_prime_UTR | 45.0% | |
| !! | GGTTCTTACTTGAGAGCATC+GGG | + | Chr1:1386229-1386248 | None:intergenic | 45.0% |
| CTCAGTACTTAACGGGAGCA+AGG | + | Chr1:1386643-1386662 | None:intergenic | 50.0% | |
| GAACTACGGTGGCATCATCA+AGG | - | Chr1:1386404-1386423 | MsG0180000096.01.T01:three_prime_UTR | 50.0% | |
| GGACAGTTGTCATCAGAGGT+TGG | - | Chr1:1386378-1386397 | MsG0180000096.01.T01:three_prime_UTR | 50.0% | |
| TTCCAGTAGTGTTGCCCCTT+TGG | - | Chr1:1386835-1386854 | MsG0180000096.01.T01:intron | 50.0% | |
| ! | GGGAGCAAGGACTTCAAGTT+GGG | + | Chr1:1386630-1386649 | None:intergenic | 50.0% |
| !! | AGCAAGGACTTCAAGTTGGG+GGG | + | Chr1:1386627-1386646 | None:intergenic | 50.0% |
| !! | GAGCAAGGACTTCAAGTTGG+GGG | + | Chr1:1386628-1386647 | None:intergenic | 50.0% |
| !! | GGAGCAAGGACTTCAAGTTG+GGG | + | Chr1:1386629-1386648 | None:intergenic | 50.0% |
| CACCAAAGGGGCAACACTAC+TGG | + | Chr1:1386840-1386859 | None:intergenic | 55.0% | |
| CGGGAGCAAGGACTTCAAGT+TGG | + | Chr1:1386631-1386650 | None:intergenic | 55.0% | |
| GAGGTTGGATGGAACTACGG+TGG | - | Chr1:1386393-1386412 | MsG0180000096.01.T01:three_prime_UTR | 55.0% | |
| GATAAGAGGAAGGAACGCGC+AGG | - | Chr1:1386527-1386546 | MsG0180000096.01.T01:CDS | 55.0% | |
| GCTCGGACAGTTGTCATCAG+AGG | - | Chr1:1386374-1386393 | MsG0180000096.01.T01:three_prime_UTR | 55.0% | |
| GGAGCTGGAGGATAAGAGGA+AGG | - | Chr1:1386517-1386536 | MsG0180000096.01.T01:CDS | 55.0% | |
| GAGGAAGGAACGCGCAGGTT+TGG | - | Chr1:1386532-1386551 | MsG0180000096.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 1386169 | 1386932 | 1386169 | ID=MsG0180000096.01;Name=MsG0180000096.01 |
| Chr1 | mRNA | 1386169 | 1386932 | 1386169 | ID=MsG0180000096.01.T01;Parent=MsG0180000096.01;Name=MsG0180000096.01.T01;_AED=0.44;_eAED=0.44;_QI=0|1|1|1|0.66|0.5|4|271|100 |
| Chr1 | exon | 1386862 | 1386932 | 1386862 | ID=MsG0180000096.01.T01:exon:7287;Parent=MsG0180000096.01.T01 |
| Chr1 | exon | 1386676 | 1386763 | 1386676 | ID=MsG0180000096.01.T01:exon:7288;Parent=MsG0180000096.01.T01 |
| Chr1 | exon | 1386169 | 1386583 | 1386169 | ID=MsG0180000096.01.T01:exon:7289;Parent=MsG0180000096.01.T01 |
| Chr1 | CDS | 1386862 | 1386932 | 1386862 | ID=MsG0180000096.01.T01:cds;Parent=MsG0180000096.01.T01 |
| Chr1 | CDS | 1386676 | 1386763 | 1386676 | ID=MsG0180000096.01.T01:cds;Parent=MsG0180000096.01.T01 |
| Chr1 | CDS | 1386440 | 1386583 | 1386440 | ID=MsG0180000096.01.T01:cds;Parent=MsG0180000096.01.T01 |
| Chr1 | three_prime_UTR | 1386169 | 1386439 | 1386169 | ID=MsG0180000096.01.T01:three_prime_utr;Parent=MsG0180000096.01.T01 |
| Gene Sequence |
| Protein sequence |
