Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009252.01.T01 | RHN74208.1 | 95.575 | 339 | 14 | 1 | 8 | 345 | 457 | 795 | 0 | 621 |
| MsG0280009252.01.T01 | RHN74208.1 | 79.351 | 339 | 67 | 3 | 6 | 342 | 4 | 341 | 1.07E-162 | 484 |
| MsG0280009252.01.T01 | RHN74208.1 | 88.636 | 88 | 10 | 0 | 95 | 182 | 334 | 421 | 7.67E-41 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009252.01.T01 | P94111 | 43.73 | 311 | 158 | 8 | 38 | 343 | 27 | 325 | 7.44E-76 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009252.01.T01 | A0A396JCT3 | 95.575 | 339 | 14 | 1 | 8 | 345 | 457 | 795 | 0.0 | 621 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0880046636.01 | MsG0280009252.01 | PPI |
| MsG0880046635.01 | MsG0280009252.01 | PPI |
| MsG0880046580.01 | MsG0280009252.01 | PPI |
| MsG0880046634.01 | MsG0280009252.01 | PPI |
| MsG0880046579.01 | MsG0280009252.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009252.01.T01 | MTR_2g058450 | 79.525 | 337 | 67 | 2 | 10 | 345 | 1 | 336 | 1.92e-175 | 490 |
| MsG0280009252.01.T01 | MTR_2g058410 | 96.983 | 232 | 7 | 0 | 113 | 344 | 1 | 232 | 4.55e-164 | 457 |
| MsG0280009252.01.T01 | MTR_4g112650 | 54.762 | 336 | 149 | 2 | 10 | 344 | 1 | 334 | 1.95e-120 | 350 |
| MsG0280009252.01.T01 | MTR_4g112670 | 53.846 | 338 | 149 | 4 | 8 | 343 | 2 | 334 | 4.43e-116 | 340 |
| MsG0280009252.01.T01 | MTR_4g112630 | 52.819 | 337 | 145 | 3 | 10 | 344 | 1 | 325 | 1.02e-110 | 325 |
| MsG0280009252.01.T01 | MTR_4g112620 | 48.817 | 338 | 133 | 4 | 8 | 344 | 2 | 300 | 3.76e-100 | 298 |
| MsG0280009252.01.T01 | MTR_7g490330 | 41.042 | 307 | 161 | 4 | 40 | 345 | 38 | 325 | 2.61e-70 | 222 |
| MsG0280009252.01.T01 | MTR_7g490350 | 37.812 | 320 | 167 | 5 | 49 | 342 | 53 | 366 | 3.35e-65 | 211 |
| MsG0280009252.01.T01 | MTR_5g091980 | 40.909 | 308 | 159 | 5 | 39 | 345 | 38 | 323 | 8.64e-64 | 206 |
| MsG0280009252.01.T01 | MTR_7g090320 | 37.725 | 334 | 157 | 7 | 49 | 340 | 58 | 382 | 1.10e-62 | 205 |
| MsG0280009252.01.T01 | MTR_7g090300 | 38.199 | 322 | 169 | 6 | 49 | 345 | 53 | 369 | 8.99e-62 | 202 |
| MsG0280009252.01.T01 | MTR_7g090310 | 37.805 | 328 | 164 | 8 | 49 | 340 | 58 | 381 | 1.61e-61 | 202 |
| MsG0280009252.01.T01 | MTR_4g050190 | 37.195 | 328 | 169 | 9 | 46 | 342 | 67 | 388 | 9.31e-60 | 197 |
| MsG0280009252.01.T01 | MTR_2g087780 | 37.092 | 337 | 176 | 8 | 37 | 342 | 61 | 392 | 1.51e-58 | 194 |
| MsG0280009252.01.T01 | MTR_0003s0530 | 54.696 | 181 | 79 | 2 | 157 | 335 | 2 | 181 | 1.20e-57 | 186 |
| MsG0280009252.01.T01 | MTR_2g099030 | 32.047 | 337 | 197 | 5 | 37 | 343 | 70 | 404 | 3.44e-51 | 175 |
| MsG0280009252.01.T01 | MTR_2g058430 | 88.095 | 84 | 10 | 0 | 102 | 185 | 50 | 133 | 1.61e-46 | 159 |
| MsG0280009252.01.T01 | MTR_8g074210 | 33.193 | 238 | 126 | 6 | 49 | 282 | 78 | 286 | 1.34e-30 | 119 |
| MsG0280009252.01.T01 | MTR_8g074270 | 31.933 | 238 | 135 | 6 | 46 | 282 | 75 | 286 | 4.36e-27 | 110 |
| MsG0280009252.01.T01 | MTR_4g112840 | 51.485 | 101 | 48 | 1 | 183 | 283 | 56 | 155 | 4.75e-27 | 105 |
| MsG0280009252.01.T01 | MTR_8g074170 | 32.365 | 241 | 130 | 7 | 46 | 282 | 75 | 286 | 1.80e-25 | 105 |
| MsG0280009252.01.T01 | MTR_2g042430 | 37.267 | 161 | 94 | 5 | 120 | 278 | 124 | 279 | 2.84e-19 | 88.2 |
| MsG0280009252.01.T01 | MTR_2g042370 | 34.395 | 157 | 97 | 5 | 124 | 278 | 116 | 268 | 7.17e-17 | 81.3 |
| MsG0280009252.01.T01 | MTR_8g074320 | 35.811 | 148 | 79 | 6 | 94 | 234 | 81 | 219 | 7.22e-16 | 76.3 |
| MsG0280009252.01.T01 | MTR_5g077620 | 48.810 | 84 | 40 | 1 | 16 | 99 | 4 | 84 | 1.04e-15 | 73.6 |
| MsG0280009252.01.T01 | MTR_2g042420 | 33.121 | 157 | 98 | 5 | 124 | 278 | 109 | 260 | 2.29e-15 | 76.6 |
| MsG0280009252.01.T01 | MTR_1g075865 | 38.318 | 107 | 62 | 3 | 161 | 266 | 7 | 110 | 1.39e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009252.01.T01 | AT1G74020 | 43.730 | 311 | 158 | 8 | 38 | 343 | 27 | 325 | 7.58e-77 | 239 |
| MsG0280009252.01.T01 | AT1G74000 | 42.071 | 309 | 166 | 6 | 38 | 343 | 29 | 327 | 8.56e-76 | 236 |
| MsG0280009252.01.T01 | AT1G74010 | 42.444 | 311 | 165 | 7 | 38 | 345 | 26 | 325 | 1.14e-70 | 223 |
| MsG0280009252.01.T01 | AT3G57030 | 40.317 | 315 | 156 | 7 | 48 | 335 | 55 | 364 | 1.96e-63 | 206 |
| MsG0280009252.01.T01 | AT5G22020 | 37.423 | 326 | 170 | 9 | 46 | 342 | 72 | 392 | 1.68e-62 | 204 |
| MsG0280009252.01.T01 | AT5G22020 | 37.423 | 326 | 170 | 9 | 46 | 342 | 72 | 392 | 1.68e-62 | 204 |
| MsG0280009252.01.T01 | AT5G22020 | 37.423 | 326 | 170 | 9 | 46 | 342 | 72 | 392 | 1.68e-62 | 204 |
| MsG0280009252.01.T01 | AT1G08470 | 37.117 | 326 | 171 | 9 | 46 | 342 | 66 | 386 | 3.68e-58 | 193 |
| MsG0280009252.01.T01 | AT2G41290 | 36.970 | 330 | 171 | 8 | 49 | 345 | 51 | 376 | 3.36e-56 | 187 |
| MsG0280009252.01.T01 | AT3G57010 | 39.754 | 244 | 138 | 4 | 37 | 279 | 42 | 277 | 1.88e-53 | 180 |
| MsG0280009252.01.T01 | AT3G57020 | 37.975 | 237 | 140 | 2 | 43 | 279 | 47 | 276 | 3.69e-50 | 171 |
| MsG0280009252.01.T01 | AT3G59530 | 37.975 | 237 | 138 | 4 | 49 | 279 | 84 | 317 | 6.56e-48 | 166 |
| MsG0280009252.01.T01 | AT3G59530 | 37.975 | 237 | 138 | 4 | 49 | 279 | 84 | 317 | 6.56e-48 | 166 |
| MsG0280009252.01.T01 | AT3G59530 | 37.975 | 237 | 138 | 4 | 49 | 279 | 84 | 317 | 6.56e-48 | 166 |
| MsG0280009252.01.T01 | AT2G41300 | 37.815 | 238 | 137 | 3 | 44 | 279 | 73 | 301 | 1.86e-46 | 162 |
| MsG0280009252.01.T01 | AT3G57020 | 35.443 | 237 | 132 | 2 | 43 | 279 | 47 | 262 | 5.73e-44 | 155 |
| MsG0280009252.01.T01 | AT3G51440 | 30.380 | 237 | 133 | 8 | 47 | 278 | 67 | 276 | 4.88e-24 | 101 |
| MsG0280009252.01.T01 | AT3G51430 | 29.536 | 237 | 135 | 8 | 47 | 278 | 67 | 276 | 1.80e-22 | 97.4 |
| MsG0280009252.01.T01 | AT3G51430 | 29.536 | 237 | 135 | 8 | 47 | 278 | 67 | 276 | 1.92e-22 | 97.4 |
| MsG0280009252.01.T01 | AT3G51450 | 27.468 | 233 | 145 | 7 | 47 | 278 | 67 | 276 | 7.15e-21 | 92.8 |
| MsG0280009252.01.T01 | AT3G51420 | 28.631 | 241 | 132 | 11 | 47 | 278 | 67 | 276 | 3.26e-18 | 85.1 |
Find 92 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTACTAGGCAGCCCTTTC+GGG | 0.172090 | 2:-48723401 | MsG0280009252.01.T01:CDS |
| TATATAGCTGATGCTTATTA+TGG | 0.199171 | 2:-48723474 | MsG0280009252.01.T01:CDS |
| GGACCTCGAGGAACGAGTTT+TGG | 0.237051 | 2:-48722614 | MsG0280009252.01.T01:CDS |
| CGAATAGAATCCGGAGATTC+TGG | 0.258519 | 2:-48722707 | MsG0280009252.01.T01:CDS |
| ATCCGGAGATTCTGGCTTAC+AGG | 0.284143 | 2:-48722699 | MsG0280009252.01.T01:CDS |
| GTGCCTCTTGTTGAGGAGTT+TGG | 0.291880 | 2:-48722492 | MsG0280009252.01.T01:CDS |
| TAGGCCTCCCACATGTTTCT+TGG | 0.297657 | 2:+48723532 | None:intergenic |
| GTGGCAGTGAATTATCCTTT+TGG | 0.303939 | 2:-48722591 | MsG0280009252.01.T01:CDS |
| AGATATATTCTTGTGGCTTC+CGG | 0.309617 | 2:-48722658 | MsG0280009252.01.T01:CDS |
| GATATATTCTTGTGGCTTCC+GGG | 0.327223 | 2:-48722657 | MsG0280009252.01.T01:CDS |
| AGCCCTTTCGGGTTTCTTGC+TGG | 0.336808 | 2:-48723390 | MsG0280009252.01.T01:CDS |
| AATGTACTAGGCAGCCCTTT+CGG | 0.343008 | 2:-48723402 | MsG0280009252.01.T01:CDS |
| CTTGTTGAGGAGTTTGGCAC+TGG | 0.354664 | 2:-48722486 | MsG0280009252.01.T01:CDS |
| CGTAATCTAGCTATGGCAAC+AGG | 0.355591 | 2:-48722780 | MsG0280009252.01.T01:CDS |
| AGCAACATGGCTGTTATCAC+TGG | 0.386843 | 2:-48724089 | MsG0280009252.01.T01:CDS |
| TAGATGATGAATAGAGTATG+AGG | 0.400964 | 2:+48724054 | None:intergenic |
| ATAAGATAAGATACTAATAT+TGG | 0.401192 | 2:-48724134 | None:intergenic |
| CTCGGCTATTAAGGAGTCTC+TGG | 0.402750 | 2:+48722865 | None:intergenic |
| CTTGTGAAGGTTTCTTATGA+TGG | 0.407212 | 2:-48723450 | MsG0280009252.01.T01:CDS |
| CAACTTGTTTCTAATGTACT+AGG | 0.408485 | 2:-48723414 | MsG0280009252.01.T01:CDS |
| TATCTTCCACCATCACTAAC+AGG | 0.409455 | 2:-48723999 | MsG0280009252.01.T01:CDS |
| TTGTTGGATTGTATCTGAAC+AGG | 0.410505 | 2:+48722826 | None:intergenic |
| CTTAGTCCAAGAGGCAAAAC+AGG | 0.412973 | 2:+48722546 | None:intergenic |
| AAATAAACGATTCCAGTGTT+AGG | 0.413431 | 2:+48723354 | None:intergenic |
| TCCCTAGCATTTGATTCCAT+TGG | 0.419739 | 2:-48723969 | MsG0280009252.01.T01:CDS |
| CACTGGAATCGTTTATTTCA+CGG | 0.419917 | 2:-48723349 | MsG0280009252.01.T01:CDS |
| CTAGCATTTGATTCCATTGG+TGG | 0.422268 | 2:-48723966 | MsG0280009252.01.T01:CDS |
| TCTGTCTAGTAATTTGCAAT+AGG | 0.427239 | 2:+48724025 | None:intergenic |
| AATGTGGTTACTTTCGTTGT+TGG | 0.436585 | 2:+48722810 | None:intergenic |
| ATATCTGAAGTATATGCATT+TGG | 0.445300 | 2:+48722675 | None:intergenic |
| CTAGCTATTATCACAAGATC+AGG | 0.448677 | 2:-48723323 | MsG0280009252.01.T01:intron |
| AGAAACATGTGGGAGGCCTA+TGG | 0.451046 | 2:-48723529 | MsG0280009252.01.T01:CDS |
| GAATCAAATGCTAGGGACTC+AGG | 0.459141 | 2:+48723975 | None:intergenic |
| GCATTTGATTCCATTGGTGG+AGG | 0.460168 | 2:-48723963 | MsG0280009252.01.T01:CDS |
| CTGTTGCCATAGCTAGATTA+CGG | 0.466820 | 2:+48722781 | None:intergenic |
| GTCCTGTAAGCCAGAATCTC+CGG | 0.467572 | 2:+48722697 | None:intergenic |
| GAAACATGTGGGAGGCCTAT+GGG | 0.483364 | 2:-48723528 | MsG0280009252.01.T01:CDS |
| CCTTACACTGGTGTTTCTGA+TGG | 0.486655 | 2:-48723939 | MsG0280009252.01.T01:CDS |
| AGAGGCAAAACAGGAGGTAC+TGG | 0.493237 | 2:+48722555 | None:intergenic |
| AGAGGCTGTGCCTCTTGTTG+AGG | 0.494455 | 2:-48722499 | MsG0280009252.01.T01:CDS |
| TTTCGGGTTTCTTGCTGGCG+TGG | 0.506089 | 2:-48723385 | MsG0280009252.01.T01:CDS |
| CCATCAGAAACACCAGTGTA+AGG | 0.510401 | 2:+48723939 | None:intergenic |
| GACTCAGGGCCTGTTAGTGA+TGG | 0.512435 | 2:+48723990 | None:intergenic |
| TGTCCTTGTTAGTGAGTACA+AGG | 0.517539 | 2:-48722730 | MsG0280009252.01.T01:CDS |
| AGTACAAGGCGAATAGAATC+CGG | 0.518601 | 2:-48722716 | MsG0280009252.01.T01:CDS |
| AGATTAGACACGTACCGGTC+TGG | 0.523062 | 2:+48723858 | None:intergenic |
| ATTGGTGGAGGGCCTTACAC+TGG | 0.525491 | 2:-48723951 | MsG0280009252.01.T01:CDS |
| AGGAACAAAACAATTTGTGA+TGG | 0.525834 | 2:-48723576 | MsG0280009252.01.T01:CDS |
| AAAACAGGAGGTACTGGTGG+TGG | 0.526815 | 2:+48722561 | None:intergenic |
| CATTTGATTCCATTGGTGGA+GGG | 0.528926 | 2:-48723962 | MsG0280009252.01.T01:CDS |
| GGAGACCAGATAACATCAAA+AGG | 0.530015 | 2:-48722635 | MsG0280009252.01.T01:CDS |
| AGTGTAAGGCCCTCCACCAA+TGG | 0.538991 | 2:+48723953 | None:intergenic |
| TCAGGGCCTGTTAGTGATGG+TGG | 0.541903 | 2:+48723993 | None:intergenic |
| AGATGATGAATAGAGTATGA+GGG | 0.545548 | 2:+48724055 | None:intergenic |
| CGCCAGCAAGAAACCCGAAA+GGG | 0.545590 | 2:+48723388 | None:intergenic |
| TTGCTCACATTTCACCAGAC+CGG | 0.560560 | 2:-48723872 | MsG0280009252.01.T01:intron |
| TGCTTATTATGGACTTGTGA+AGG | 0.563222 | 2:-48723463 | MsG0280009252.01.T01:CDS |
| ACCAATGGAATCAAATGCTA+GGG | 0.565533 | 2:+48723968 | None:intergenic |
| TTGATGTTATCTGGTCTCCC+CGG | 0.575311 | 2:+48722639 | None:intergenic |
| CACCAATGGAATCAAATGCT+AGG | 0.576942 | 2:+48723967 | None:intergenic |
| GTTGCTCCGTAATCTAGCTA+TGG | 0.579397 | 2:-48722787 | MsG0280009252.01.T01:CDS |
| ATACTTCAGATATATTCTTG+TGG | 0.582130 | 2:-48722665 | MsG0280009252.01.T01:CDS |
| TCAGAACTCCAAGAAACATG+TGG | 0.584132 | 2:-48723540 | MsG0280009252.01.T01:CDS |
| ACAGGAGGTACTGGTGGTGG+TGG | 0.586387 | 2:+48722564 | None:intergenic |
| GGGGTAGCAGTAAGCAGCAA+TGG | 0.587063 | 2:-48722759 | MsG0280009252.01.T01:CDS |
| ATATATTCTTGTGGCTTCCG+GGG | 0.588908 | 2:-48722656 | MsG0280009252.01.T01:CDS |
| GGACTAAGAATCAATGAGCA+AGG | 0.590807 | 2:-48722531 | MsG0280009252.01.T01:CDS |
| GAGTTTCAATTACAAGACAA+AGG | 0.594718 | 2:-48723502 | MsG0280009252.01.T01:CDS |
| CAGTGAAGTTCATGAAGCTG+AGG | 0.595249 | 2:-48722457 | MsG0280009252.01.T01:CDS |
| GTAATCTAGCTATGGCAACA+GGG | 0.595258 | 2:-48722779 | MsG0280009252.01.T01:CDS |
| AATCAAATGCTAGGGACTCA+GGG | 0.595632 | 2:+48723976 | None:intergenic |
| GTGCCAAACTCCTCAACAAG+AGG | 0.597643 | 2:+48722489 | None:intergenic |
| AAACATGTGGGAGGCCTATG+GGG | 0.604258 | 2:-48723527 | MsG0280009252.01.T01:CDS |
| TCATTGATTCTTAGTCCAAG+AGG | 0.611298 | 2:+48722537 | None:intergenic |
| TAATTGAAACTCAACCCCAT+AGG | 0.612502 | 2:+48723513 | None:intergenic |
| GTGAAATGTGAGCAAACTCA+AGG | 0.618650 | 2:+48723880 | None:intergenic |
| GTGAAGGTTTCTTATGATGG+AGG | 0.621834 | 2:-48723447 | MsG0280009252.01.T01:CDS |
| ATTAAACATGTCTAGCAACA+TGG | 0.622340 | 2:-48724102 | MsG0280009252.01.T01:CDS |
| GGTGGTGGTGGTGACCCAAA+AGG | 0.627094 | 2:+48722576 | None:intergenic |
| GCAACATGGCTGTTATCACT+GGG | 0.627898 | 2:-48724088 | MsG0280009252.01.T01:CDS |
| ACGCCAGCAAGAAACCCGAA+AGG | 0.628543 | 2:+48723387 | None:intergenic |
| GGCAAAACAGGAGGTACTGG+TGG | 0.653676 | 2:+48722558 | None:intergenic |
| CAGAACTCCAAGAAACATGT+GGG | 0.662175 | 2:-48723539 | MsG0280009252.01.T01:CDS |
| CACCCAAAACTCGTTCCTCG+AGG | 0.665102 | 2:+48722611 | None:intergenic |
| GTGGATGTCGATCCTAACAC+TGG | 0.666158 | 2:-48723366 | MsG0280009252.01.T01:CDS |
| AGTGAAGTTCATGAAGCTGA+GGG | 0.672665 | 2:-48722456 | MsG0280009252.01.T01:CDS |
| AACTCCAAGAAACATGTGGG+AGG | 0.685654 | 2:-48723536 | MsG0280009252.01.T01:CDS |
| TCGCCTTGTACTCACTAACA+AGG | 0.687142 | 2:+48722727 | None:intergenic |
| TAATCTAGCTATGGCAACAG+GGG | 0.694131 | 2:-48722778 | MsG0280009252.01.T01:CDS |
| AGTCCAAGAGGCAAAACAGG+AGG | 0.699465 | 2:+48722549 | None:intergenic |
| TAGATTACGGAGCAACAATG+TGG | 0.714952 | 2:+48722794 | None:intergenic |
| ATAACATCAAAAGGACCTCG+AGG | 0.715796 | 2:-48722626 | MsG0280009252.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTATTATGTATTATATTT+TGG | + | Chr2:48722869-48722888 | None:intergenic | 10.0% |
| !! | TTATATAGGTCATAATAAAA+TGG | - | Chr2:48722710-48722729 | MsG0280009252.01.T01:CDS | 15.0% |
| !! | ATGGATGTCTATTATTATAT+AGG | - | Chr2:48722696-48722715 | MsG0280009252.01.T01:CDS | 20.0% |
| !! | TATGTAATTATAGTCATAGT+CGG | - | Chr2:48722895-48722914 | MsG0280009252.01.T01:intron | 20.0% |
| !!! | ATTTAGGTCACAATTTTAAT+CGG | + | Chr2:48723625-48723644 | None:intergenic | 20.0% |
| ! | AAAAAATATCTCGGCTATTA+AGG | + | Chr2:48723670-48723689 | None:intergenic | 25.0% |
| ! | AATCATGAGATAGAATAGAA+TGG | + | Chr2:48723230-48723249 | None:intergenic | 25.0% |
| ! | ATACTTCAGATATATTCTTG+TGG | - | Chr2:48723858-48723877 | MsG0280009252.01.T01:intron | 25.0% |
| ! | GTTGTGTTTATAAAGTGTAT+AGG | + | Chr2:48723479-48723498 | None:intergenic | 25.0% |
| ! | TATATAGCTGATGCTTATTA+TGG | - | Chr2:48723049-48723068 | MsG0280009252.01.T01:intron | 25.0% |
| ! | TCTCAAAGCATGTATATTAA+AGG | - | Chr2:48723429-48723448 | MsG0280009252.01.T01:CDS | 25.0% |
| !! | ATATCTGAAGTATATGCATT+TGG | + | Chr2:48723851-48723870 | None:intergenic | 25.0% |
| !! | CTTTGAGAAGAGAATATTAT+AGG | + | Chr2:48723417-48723436 | None:intergenic | 25.0% |
| AAATAAACGATTCCAGTGTT+AGG | + | Chr2:48723172-48723191 | None:intergenic | 30.0% | |
| AATGTGAACATCTTTCTTGA+CGG | + | Chr2:48722745-48722764 | None:intergenic | 30.0% | |
| AGATGATGAATAGAGTATGA+GGG | + | Chr2:48722471-48722490 | None:intergenic | 30.0% | |
| AGGAACAAAACAATTTGTGA+TGG | - | Chr2:48722947-48722966 | MsG0280009252.01.T01:intron | 30.0% | |
| ATTAAACATGTCTAGCAACA+TGG | - | Chr2:48722421-48722440 | MsG0280009252.01.T01:CDS | 30.0% | |
| ATTATAGTCATAGTCGGTTA+AGG | - | Chr2:48722901-48722920 | MsG0280009252.01.T01:intron | 30.0% | |
| GAGTTTCAATTACAAGACAA+AGG | - | Chr2:48723021-48723040 | MsG0280009252.01.T01:intron | 30.0% | |
| TAGAGCAGATTAAACCTATA+TGG | + | Chr2:48722783-48722802 | None:intergenic | 30.0% | |
| TAGATGATGAATAGAGTATG+AGG | + | Chr2:48722472-48722491 | None:intergenic | 30.0% | |
| TTCCTATAACAACAATGACA+TGG | + | Chr2:48722932-48722951 | None:intergenic | 30.0% | |
| ! | AACCATGTCATTGTTGTTAT+AGG | - | Chr2:48722927-48722946 | MsG0280009252.01.T01:intron | 30.0% |
| ! | AATTGTGACCTAAATTTTGC+AGG | - | Chr2:48723630-48723649 | MsG0280009252.01.T01:intron | 30.0% |
| ! | AGTATTGAACTTGACCATAT+AGG | - | Chr2:48722766-48722785 | MsG0280009252.01.T01:CDS | 30.0% |
| ! | ATTGTGACCTAAATTTTGCA+GGG | - | Chr2:48723631-48723650 | MsG0280009252.01.T01:intron | 30.0% |
| ! | TCTGTCTAGTAATTTGCAAT+AGG | + | Chr2:48722501-48722520 | None:intergenic | 30.0% |
| !! | CAACTTGTTTCTAATGTACT+AGG | - | Chr2:48723109-48723128 | MsG0280009252.01.T01:intron | 30.0% |
| !! | TGAGCAAGGTTTAATTTTAG+AGG | - | Chr2:48724006-48724025 | MsG0280009252.01.T01:CDS | 30.0% |
| !!! | AATAGCCGAGATATTTTTTC+TGG | - | Chr2:48723671-48723690 | MsG0280009252.01.T01:intron | 30.0% |
| ACATTAGATTAGACACGTAC+CGG | + | Chr2:48722673-48722692 | None:intergenic | 35.0% | |
| ACCAATGGAATCAAATGCTA+GGG | + | Chr2:48722558-48722577 | None:intergenic | 35.0% | |
| AGATATATTCTTGTGGCTTC+CGG | - | Chr2:48723865-48723884 | MsG0280009252.01.T01:intron | 35.0% | |
| CACTGGAATCGTTTATTTCA+CGG | - | Chr2:48723174-48723193 | MsG0280009252.01.T01:intron | 35.0% | |
| CTAGCTATTATCACAAGATC+AGG | - | Chr2:48723200-48723219 | MsG0280009252.01.T01:intron | 35.0% | |
| CTTGTGAAGGTTTCTTATGA+TGG | - | Chr2:48723073-48723092 | MsG0280009252.01.T01:intron | 35.0% | |
| GCAAATATTCTCTCTAGTCT+TGG | - | Chr2:48723599-48723618 | MsG0280009252.01.T01:intron | 35.0% | |
| GGCTTCCAGAAAAAATATCT+CGG | + | Chr2:48723679-48723698 | None:intergenic | 35.0% | |
| GTGTCTAATCTAATGTGCAA+TGG | - | Chr2:48722677-48722696 | MsG0280009252.01.T01:CDS | 35.0% | |
| TAATTGAAACTCAACCCCAT+AGG | + | Chr2:48723013-48723032 | None:intergenic | 35.0% | |
| TATAGCAACGCGAAAAAACA+TGG | + | Chr2:48723256-48723275 | None:intergenic | 35.0% | |
| TGCTTATTATGGACTTGTGA+AGG | - | Chr2:48723060-48723079 | MsG0280009252.01.T01:intron | 35.0% | |
| TTGTTGGATTGTATCTGAAC+AGG | + | Chr2:48723700-48723719 | None:intergenic | 35.0% | |
| ! | AATGTGGTTACTTTCGTTGT+TGG | + | Chr2:48723716-48723735 | None:intergenic | 35.0% |
| ! | TGGCAGTGAATTATCCTTTT+GGG | - | Chr2:48723933-48723952 | MsG0280009252.01.T01:CDS | 35.0% |
| !! | TCATTGATTCTTAGTCCAAG+AGG | + | Chr2:48723989-48724008 | None:intergenic | 35.0% |
| AATCAAATGCTAGGGACTCA+GGG | + | Chr2:48722550-48722569 | None:intergenic | 40.0% | |
| AGTACAAGGCGAATAGAATC+CGG | - | Chr2:48723807-48723826 | MsG0280009252.01.T01:intron | 40.0% | |
| AGTGAAGTTCATGAAGCTGA+GGG | - | Chr2:48724067-48724086 | MsG0280009252.01.T01:CDS | 40.0% | |
| ATAACATCAAAAGGACCTCG+AGG | - | Chr2:48723897-48723916 | MsG0280009252.01.T01:CDS | 40.0% | |
| ATATATTCTTGTGGCTTCCG+GGG | - | Chr2:48723867-48723886 | MsG0280009252.01.T01:intron | 40.0% | |
| CACCAATGGAATCAAATGCT+AGG | + | Chr2:48722559-48722578 | None:intergenic | 40.0% | |
| CAGAACTCCAAGAAACATGT+GGG | - | Chr2:48722984-48723003 | MsG0280009252.01.T01:intron | 40.0% | |
| CATTTGATTCCATTGGTGGA+GGG | - | Chr2:48722561-48722580 | MsG0280009252.01.T01:CDS | 40.0% | |
| CTAGCATTTGATTCCATTGG+TGG | - | Chr2:48722557-48722576 | MsG0280009252.01.T01:CDS | 40.0% | |
| CTGTTGCCATAGCTAGATTA+CGG | + | Chr2:48723745-48723764 | None:intergenic | 40.0% | |
| GATATATTCTTGTGGCTTCC+GGG | - | Chr2:48723866-48723885 | MsG0280009252.01.T01:intron | 40.0% | |
| GGACTAAGAATCAATGAGCA+AGG | - | Chr2:48723992-48724011 | MsG0280009252.01.T01:CDS | 40.0% | |
| GGAGACCAGATAACATCAAA+AGG | - | Chr2:48723888-48723907 | MsG0280009252.01.T01:CDS | 40.0% | |
| GTAATCTAGCTATGGCAACA+GGG | - | Chr2:48723744-48723763 | MsG0280009252.01.T01:intron | 40.0% | |
| GTGAAATGTGAGCAAACTCA+AGG | + | Chr2:48722646-48722665 | None:intergenic | 40.0% | |
| GTGAAGGTTTCTTATGATGG+AGG | - | Chr2:48723076-48723095 | MsG0280009252.01.T01:intron | 40.0% | |
| TAATCTAGCTATGGCAACAG+GGG | - | Chr2:48723745-48723764 | MsG0280009252.01.T01:intron | 40.0% | |
| TAGATTACGGAGCAACAATG+TGG | + | Chr2:48723732-48723751 | None:intergenic | 40.0% | |
| TATCTTCCACCATCACTAAC+AGG | - | Chr2:48722524-48722543 | MsG0280009252.01.T01:CDS | 40.0% | |
| TCAGAACTCCAAGAAACATG+TGG | - | Chr2:48722983-48723002 | MsG0280009252.01.T01:intron | 40.0% | |
| TCCCTAGCATTTGATTCCAT+TGG | - | Chr2:48722554-48722573 | MsG0280009252.01.T01:CDS | 40.0% | |
| TGATAGTAGTGAGTTCACAC+AGG | - | Chr2:48723562-48723581 | MsG0280009252.01.T01:CDS | 40.0% | |
| TGGAGATCCCTGCAAAATTT+AGG | + | Chr2:48723641-48723660 | None:intergenic | 40.0% | |
| TGTCCTTGTTAGTGAGTACA+AGG | - | Chr2:48723793-48723812 | MsG0280009252.01.T01:intron | 40.0% | |
| ! | GAGGTCCTTTTGATGTTATC+TGG | + | Chr2:48723896-48723915 | None:intergenic | 40.0% |
| ! | GTGGCAGTGAATTATCCTTT+TGG | - | Chr2:48723932-48723951 | MsG0280009252.01.T01:CDS | 40.0% |
| ! | TCATGATGCCTTGATGATTC+AGG | + | Chr2:48723363-48723382 | None:intergenic | 40.0% |
| AACTCCAAGAAACATGTGGG+AGG | - | Chr2:48722987-48723006 | MsG0280009252.01.T01:intron | 45.0% | |
| AATGTACTAGGCAGCCCTTT+CGG | - | Chr2:48723121-48723140 | MsG0280009252.01.T01:intron | 45.0% | |
| AGCAACATGGCTGTTATCAC+TGG | - | Chr2:48722434-48722453 | MsG0280009252.01.T01:CDS | 45.0% | |
| CAGTGAAGTTCATGAAGCTG+AGG | - | Chr2:48724066-48724085 | MsG0280009252.01.T01:CDS | 45.0% | |
| CCATCAGAAACACCAGTGTA+AGG | + | Chr2:48722587-48722606 | None:intergenic | 45.0% | |
| CGAATAGAATCCGGAGATTC+TGG | - | Chr2:48723816-48723835 | MsG0280009252.01.T01:intron | 45.0% | |
| CGTAATCTAGCTATGGCAAC+AGG | - | Chr2:48723743-48723762 | MsG0280009252.01.T01:intron | 45.0% | |
| CTTAGTCCAAGAGGCAAAAC+AGG | + | Chr2:48723980-48723999 | None:intergenic | 45.0% | |
| GAATCAAATGCTAGGGACTC+AGG | + | Chr2:48722551-48722570 | None:intergenic | 45.0% | |
| GCAACATGGCTGTTATCACT+GGG | - | Chr2:48722435-48722454 | MsG0280009252.01.T01:CDS | 45.0% | |
| GCATTTGATTCCATTGGTGG+AGG | - | Chr2:48722560-48722579 | MsG0280009252.01.T01:CDS | 45.0% | |
| GTTGCTCCGTAATCTAGCTA+TGG | - | Chr2:48723736-48723755 | MsG0280009252.01.T01:intron | 45.0% | |
| TCGCCTTGTACTCACTAACA+AGG | + | Chr2:48723799-48723818 | None:intergenic | 45.0% | |
| TTGATGTTATCTGGTCTCCC+CGG | + | Chr2:48723887-48723906 | None:intergenic | 45.0% | |
| TTGCCATGCCTGAATCATCA+AGG | - | Chr2:48723352-48723371 | MsG0280009252.01.T01:CDS | 45.0% | |
| TTGCTCACATTTCACCAGAC+CGG | - | Chr2:48722651-48722670 | MsG0280009252.01.T01:CDS | 45.0% | |
| ! | ATGCCTTGATGATTCAGGCA+TGG | + | Chr2:48723358-48723377 | None:intergenic | 45.0% |
| ! | CCTTACACTGGTGTTTCTGA+TGG | - | Chr2:48722584-48722603 | MsG0280009252.01.T01:CDS | 45.0% |
| !! | AGTGTCGACGTGCTTTCATA+GGG | - | Chr2:48722836-48722855 | MsG0280009252.01.T01:CDS | 45.0% |
| AAACATGTGGGAGGCCTATG+GGG | - | Chr2:48722996-48723015 | MsG0280009252.01.T01:intron | 50.0% | |
| AGAAACATGTGGGAGGCCTA+TGG | - | Chr2:48722994-48723013 | MsG0280009252.01.T01:intron | 50.0% | |
| AGTCCAAGAGGCAAAACAGG+AGG | + | Chr2:48723977-48723996 | None:intergenic | 50.0% | |
| ATGTACTAGGCAGCCCTTTC+GGG | - | Chr2:48723122-48723141 | MsG0280009252.01.T01:intron | 50.0% | |
| CTCGGCTATTAAGGAGTCTC+TGG | + | Chr2:48723661-48723680 | None:intergenic | 50.0% | |
| CTTGTTGAGGAGTTTGGCAC+TGG | - | Chr2:48724037-48724056 | MsG0280009252.01.T01:CDS | 50.0% | |
| GAAACATGTGGGAGGCCTAT+GGG | - | Chr2:48722995-48723014 | MsG0280009252.01.T01:intron | 50.0% | |
| GTCCTGTAAGCCAGAATCTC+CGG | + | Chr2:48723829-48723848 | None:intergenic | 50.0% | |
| GTGCCAAACTCCTCAACAAG+AGG | + | Chr2:48724037-48724056 | None:intergenic | 50.0% | |
| GTGCCTCTTGTTGAGGAGTT+TGG | - | Chr2:48724031-48724050 | MsG0280009252.01.T01:CDS | 50.0% | |
| GTGGATGTCGATCCTAACAC+TGG | - | Chr2:48723157-48723176 | MsG0280009252.01.T01:intron | 50.0% | |
| TAGGCCTCCCACATGTTTCT+TGG | + | Chr2:48722994-48723013 | None:intergenic | 50.0% | |
| ! | AGAGGCAAAACAGGAGGTAC+TGG | + | Chr2:48723971-48723990 | None:intergenic | 50.0% |
| ! | AGATTAGACACGTACCGGTC+TGG | + | Chr2:48722668-48722687 | None:intergenic | 50.0% |
| ! | GACCTCGAGGAACGAGTTTT+GGG | - | Chr2:48723910-48723929 | MsG0280009252.01.T01:CDS | 50.0% |
| ! | GTACCTCCTGTTTTGCCTCT+TGG | - | Chr2:48723971-48723990 | MsG0280009252.01.T01:CDS | 50.0% |
| !! | AAAACAGGAGGTACTGGTGG+TGG | + | Chr2:48723965-48723984 | None:intergenic | 50.0% |
| !! | ATCCGGAGATTCTGGCTTAC+AGG | - | Chr2:48723824-48723843 | MsG0280009252.01.T01:intron | 50.0% |
| !! | CAGTGTCGACGTGCTTTCAT+AGG | - | Chr2:48722835-48722854 | MsG0280009252.01.T01:CDS | 50.0% |
| ACGCCAGCAAGAAACCCGAA+AGG | + | Chr2:48723139-48723158 | None:intergenic | 55.0% | |
| AGAGGCTGTGCCTCTTGTTG+AGG | - | Chr2:48724024-48724043 | MsG0280009252.01.T01:CDS | 55.0% | |
| AGTGTAAGGCCCTCCACCAA+TGG | + | Chr2:48722573-48722592 | None:intergenic | 55.0% | |
| ATTGGTGGAGGGCCTTACAC+TGG | - | Chr2:48722572-48722591 | MsG0280009252.01.T01:CDS | 55.0% | |
| CACCCAAAACTCGTTCCTCG+AGG | + | Chr2:48723915-48723934 | None:intergenic | 55.0% | |
| CGCCAGCAAGAAACCCGAAA+GGG | + | Chr2:48723138-48723157 | None:intergenic | 55.0% | |
| GACTCAGGGCCTGTTAGTGA+TGG | + | Chr2:48722536-48722555 | None:intergenic | 55.0% | |
| GGGGTAGCAGTAAGCAGCAA+TGG | - | Chr2:48723764-48723783 | MsG0280009252.01.T01:intron | 55.0% | |
| TCAGGGCCTGTTAGTGATGG+TGG | + | Chr2:48722533-48722552 | None:intergenic | 55.0% | |
| ! | GGACCTCGAGGAACGAGTTT+TGG | - | Chr2:48723909-48723928 | MsG0280009252.01.T01:CDS | 55.0% |
| !! | AGCCCTTTCGGGTTTCTTGC+TGG | - | Chr2:48723133-48723152 | MsG0280009252.01.T01:intron | 55.0% |
| !! | GGCAAAACAGGAGGTACTGG+TGG | + | Chr2:48723968-48723987 | None:intergenic | 55.0% |
| !! | TTTCGGGTTTCTTGCTGGCG+TGG | - | Chr2:48723138-48723157 | MsG0280009252.01.T01:intron | 55.0% |
| !!! | CTCGAGGAACGAGTTTTGGG+TGG | - | Chr2:48723913-48723932 | MsG0280009252.01.T01:CDS | 55.0% |
| !! | ACAGGAGGTACTGGTGGTGG+TGG | + | Chr2:48723962-48723981 | None:intergenic | 60.0% |
| !! | GGTGGTGGTGGTGACCCAAA+AGG | + | Chr2:48723950-48723969 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 48722401 | 48724144 | 48722401 | ID=MsG0280009252.01;Name=MsG0280009252.01 |
| Chr2 | mRNA | 48722401 | 48724144 | 48722401 | ID=MsG0280009252.01.T01;Parent=MsG0280009252.01;Name=MsG0280009252.01.T01;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|345 |
| Chr2 | exon | 48723873 | 48724144 | 48723873 | ID=MsG0280009252.01.T01:exon:44862;Parent=MsG0280009252.01.T01 |
| Chr2 | exon | 48723324 | 48723596 | 48723324 | ID=MsG0280009252.01.T01:exon:44861;Parent=MsG0280009252.01.T01 |
| Chr2 | exon | 48722401 | 48722893 | 48722401 | ID=MsG0280009252.01.T01:exon:44860;Parent=MsG0280009252.01.T01 |
| Chr2 | CDS | 48723873 | 48724144 | 48723873 | ID=MsG0280009252.01.T01:cds;Parent=MsG0280009252.01.T01 |
| Chr2 | CDS | 48723324 | 48723596 | 48723324 | ID=MsG0280009252.01.T01:cds;Parent=MsG0280009252.01.T01 |
| Chr2 | CDS | 48722401 | 48722893 | 48722401 | ID=MsG0280009252.01.T01:cds;Parent=MsG0280009252.01.T01 |
| Gene Sequence |
| Protein sequence |
