Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046634.01.T01 | XP_003609164.2 | 94.333 | 300 | 17 | 0 | 1 | 300 | 4 | 303 | 0 | 580 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046634.01.T01 | Q4V3D9 | 44.615 | 260 | 125 | 2 | 35 | 278 | 55 | 311 | 3.93E-71 | 228 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046634.01.T01 | G7JT39 | 94.333 | 300 | 17 | 0 | 1 | 300 | 4 | 303 | 0.0 | 580 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0880046579.01 | MsG0880046634.01 | PPI |
| MsG0880046634.01 | MsG0880046636.01 | PPI |
| MsG0880046634.01 | MsG0880046580.01 | PPI |
| MsG0880046634.01 | MsG0280009252.01 | PPI |
| MsG0880046635.01 | MsG0880046634.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046634.01.T01 | MTR_4g112670 | 94.333 | 300 | 17 | 0 | 1 | 300 | 4 | 303 | 0.0 | 580 |
| MsG0880046634.01.T01 | MTR_4g112650 | 78.114 | 297 | 61 | 2 | 2 | 296 | 4 | 298 | 2.23e-168 | 472 |
| MsG0880046634.01.T01 | MTR_4g112630 | 71.141 | 298 | 71 | 2 | 2 | 296 | 4 | 289 | 2.05e-149 | 424 |
| MsG0880046634.01.T01 | MTR_4g112620 | 68.836 | 292 | 52 | 3 | 1 | 292 | 8 | 260 | 3.48e-138 | 394 |
| MsG0880046634.01.T01 | MTR_2g058450 | 60.905 | 243 | 94 | 1 | 24 | 265 | 28 | 270 | 1.25e-102 | 305 |
| MsG0880046634.01.T01 | MTR_0003s0530 | 91.558 | 154 | 13 | 0 | 143 | 296 | 1 | 154 | 4.74e-100 | 294 |
| MsG0880046634.01.T01 | MTR_7g490330 | 46.038 | 265 | 133 | 3 | 8 | 266 | 14 | 274 | 2.23e-74 | 233 |
| MsG0880046634.01.T01 | MTR_7g490350 | 47.619 | 231 | 118 | 1 | 36 | 266 | 53 | 280 | 2.47e-74 | 234 |
| MsG0880046634.01.T01 | MTR_7g090300 | 47.414 | 232 | 117 | 2 | 36 | 266 | 53 | 280 | 2.74e-71 | 226 |
| MsG0880046634.01.T01 | MTR_5g091980 | 45.200 | 250 | 134 | 1 | 17 | 266 | 29 | 275 | 8.16e-70 | 221 |
| MsG0880046634.01.T01 | MTR_4g050190 | 43.673 | 245 | 128 | 5 | 26 | 265 | 60 | 299 | 8.55e-67 | 215 |
| MsG0880046634.01.T01 | MTR_2g087780 | 42.339 | 248 | 134 | 4 | 23 | 265 | 60 | 303 | 1.45e-66 | 215 |
| MsG0880046634.01.T01 | MTR_7g090320 | 43.952 | 248 | 132 | 4 | 26 | 266 | 48 | 295 | 3.24e-66 | 214 |
| MsG0880046634.01.T01 | MTR_7g090310 | 43.750 | 240 | 129 | 3 | 36 | 269 | 58 | 297 | 4.88e-63 | 206 |
| MsG0880046634.01.T01 | MTR_2g058410 | 59.064 | 171 | 69 | 1 | 100 | 269 | 1 | 171 | 3.16e-62 | 198 |
| MsG0880046634.01.T01 | MTR_2g099030 | 39.431 | 246 | 143 | 2 | 24 | 264 | 70 | 314 | 7.40e-60 | 197 |
| MsG0880046634.01.T01 | MTR_4g112840 | 77.000 | 100 | 23 | 0 | 170 | 269 | 56 | 155 | 4.69e-49 | 162 |
| MsG0880046634.01.T01 | MTR_5g077620 | 73.563 | 87 | 21 | 2 | 1 | 87 | 1 | 85 | 1.61e-34 | 124 |
| MsG0880046634.01.T01 | MTR_8g074170 | 34.310 | 239 | 133 | 5 | 36 | 274 | 78 | 292 | 2.26e-32 | 124 |
| MsG0880046634.01.T01 | MTR_8g074270 | 33.473 | 239 | 135 | 5 | 36 | 274 | 78 | 292 | 2.83e-30 | 119 |
| MsG0880046634.01.T01 | MTR_8g074210 | 33.191 | 235 | 133 | 5 | 34 | 268 | 76 | 286 | 2.33e-29 | 116 |
| MsG0880046634.01.T01 | MTR_2g042430 | 36.478 | 159 | 97 | 3 | 107 | 264 | 124 | 279 | 6.79e-25 | 103 |
| MsG0880046634.01.T01 | MTR_2g042370 | 32.086 | 187 | 117 | 4 | 107 | 292 | 112 | 289 | 3.55e-24 | 101 |
| MsG0880046634.01.T01 | MTR_2g042420 | 31.551 | 187 | 117 | 4 | 107 | 292 | 105 | 281 | 8.55e-24 | 100 |
| MsG0880046634.01.T01 | MTR_2g058430 | 50.495 | 101 | 41 | 1 | 73 | 173 | 43 | 134 | 6.16e-22 | 94.0 |
| MsG0880046634.01.T01 | MTR_8g074320 | 38.583 | 127 | 73 | 3 | 97 | 220 | 95 | 219 | 4.45e-19 | 85.1 |
| MsG0880046634.01.T01 | MTR_1g075865 | 38.095 | 105 | 64 | 1 | 148 | 252 | 7 | 110 | 1.08e-16 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046634.01.T01 | AT3G57030 | 44.615 | 260 | 125 | 2 | 35 | 278 | 55 | 311 | 4.01e-72 | 228 |
| MsG0880046634.01.T01 | AT3G57010 | 41.975 | 243 | 135 | 2 | 23 | 265 | 41 | 277 | 2.12e-69 | 221 |
| MsG0880046634.01.T01 | AT1G08470 | 44.444 | 243 | 128 | 4 | 26 | 265 | 59 | 297 | 2.73e-68 | 219 |
| MsG0880046634.01.T01 | AT3G57020 | 41.949 | 236 | 131 | 1 | 30 | 265 | 47 | 276 | 2.87e-67 | 216 |
| MsG0880046634.01.T01 | AT5G22020 | 42.623 | 244 | 131 | 5 | 26 | 265 | 65 | 303 | 1.93e-64 | 209 |
| MsG0880046634.01.T01 | AT5G22020 | 42.623 | 244 | 131 | 5 | 26 | 265 | 65 | 303 | 1.93e-64 | 209 |
| MsG0880046634.01.T01 | AT5G22020 | 42.623 | 244 | 131 | 5 | 26 | 265 | 65 | 303 | 1.93e-64 | 209 |
| MsG0880046634.01.T01 | AT1G74020 | 45.833 | 240 | 127 | 3 | 25 | 263 | 27 | 264 | 2.88e-64 | 207 |
| MsG0880046634.01.T01 | AT1G74010 | 42.336 | 274 | 148 | 7 | 25 | 295 | 26 | 292 | 1.49e-61 | 199 |
| MsG0880046634.01.T01 | AT3G57020 | 39.407 | 236 | 123 | 1 | 30 | 265 | 47 | 262 | 1.72e-61 | 201 |
| MsG0880046634.01.T01 | AT2G41300 | 39.381 | 226 | 131 | 1 | 41 | 266 | 83 | 302 | 1.95e-59 | 196 |
| MsG0880046634.01.T01 | AT1G74000 | 41.961 | 255 | 140 | 5 | 25 | 276 | 29 | 278 | 3.48e-59 | 194 |
| MsG0880046634.01.T01 | AT3G59530 | 39.095 | 243 | 142 | 3 | 27 | 264 | 75 | 316 | 1.49e-57 | 192 |
| MsG0880046634.01.T01 | AT3G59530 | 39.095 | 243 | 142 | 3 | 27 | 264 | 75 | 316 | 1.49e-57 | 192 |
| MsG0880046634.01.T01 | AT3G59530 | 39.095 | 243 | 142 | 3 | 27 | 264 | 75 | 316 | 1.49e-57 | 192 |
| MsG0880046634.01.T01 | AT2G41290 | 42.616 | 237 | 127 | 4 | 36 | 266 | 51 | 284 | 3.07e-57 | 190 |
| MsG0880046634.01.T01 | AT3G51440 | 29.502 | 261 | 154 | 7 | 14 | 266 | 40 | 278 | 6.55e-25 | 103 |
| MsG0880046634.01.T01 | AT3G51420 | 29.231 | 260 | 152 | 9 | 14 | 264 | 40 | 276 | 1.61e-24 | 102 |
| MsG0880046634.01.T01 | AT3G51430 | 30.736 | 231 | 137 | 6 | 37 | 266 | 70 | 278 | 1.82e-24 | 102 |
| MsG0880046634.01.T01 | AT3G51430 | 30.568 | 229 | 136 | 6 | 37 | 264 | 70 | 276 | 2.19e-24 | 102 |
| MsG0880046634.01.T01 | AT3G51450 | 30.769 | 234 | 133 | 7 | 37 | 266 | 70 | 278 | 5.63e-24 | 101 |
Find 80 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATGTAGCTGATGCTTATT+TGG | 0.184950 | 8:+75971230 | MsG0880046634.01.T01:CDS |
| GGAATTCAGGAGGCCAATTT+TGG | 0.191849 | 8:+75971759 | MsG0880046634.01.T01:CDS |
| GAATTCCTCTTGATGTTATT+TGG | 0.192006 | 8:-75971743 | None:intergenic |
| AAATATTTAGTTACCTGTTT+GGG | 0.255785 | 8:-75970844 | None:intergenic |
| CTTGTGCAGGTCCAACTAAT+TGG | 0.272786 | 8:-75971290 | None:intergenic |
| TATGCACTGAAATCCAAAAT+TGG | 0.298675 | 8:-75971772 | None:intergenic |
| TATGTAGCTGATGCTTATTT+GGG | 0.310175 | 8:+75971231 | MsG0880046634.01.T01:CDS |
| GCATCTCTTGCTGCTGAGTA+TGG | 0.315822 | 8:+75971886 | MsG0880046634.01.T01:CDS |
| AATAACATCAAGAGGAATTC+AGG | 0.320309 | 8:+75971746 | MsG0880046634.01.T01:CDS |
| GAACTATTCATGCTACTTAC+TGG | 0.331823 | 8:+75971716 | MsG0880046634.01.T01:CDS |
| CAAACAGAATTCAAAGAGTA+TGG | 0.337397 | 8:+75971666 | MsG0880046634.01.T01:CDS |
| TGCTTATTTGGGGCTTGTTA+AGG | 0.363818 | 8:+75971242 | MsG0880046634.01.T01:CDS |
| GAAATATTTAGTTACCTGTT+TGG | 0.366521 | 8:-75970845 | None:intergenic |
| CTCCACTAGTTAGCAGTGTT+TGG | 0.373816 | 8:-75971511 | None:intergenic |
| GCCGTACGCCTTGGAGATAT+TGG | 0.402807 | 8:-75971815 | None:intergenic |
| GCTAACTAGTGGAGATAGTT+CGG | 0.406368 | 8:+75971520 | MsG0880046634.01.T01:CDS |
| GCAACATGTGGAAGGCCATT+AGG | 0.408625 | 8:+75971177 | MsG0880046634.01.T01:CDS |
| TTGTGCAGGTCCAACTAATT+GGG | 0.417683 | 8:-75971289 | None:intergenic |
| AAAACAATGCTTACTTGAGT+TGG | 0.418022 | 8:-75971395 | None:intergenic |
| ATGGCCTTCCACATGTTGCT+TGG | 0.423208 | 8:-75971173 | None:intergenic |
| TGCTTAGCAACACCGTCGTT+TGG | 0.427505 | 8:-75971574 | None:intergenic |
| TGTGGAAGGCCATTAGGATT+GGG | 0.448985 | 8:+75971183 | MsG0880046634.01.T01:CDS |
| TTGGGTTTCAATCATCAAAC+AGG | 0.453284 | 8:+75971201 | MsG0880046634.01.T01:CDS |
| CTAACTAGTGGAGATAGTTC+GGG | 0.455356 | 8:+75971521 | MsG0880046634.01.T01:CDS |
| AGCAATCTTGCAATGCCATC+TGG | 0.458768 | 8:+75971593 | MsG0880046634.01.T01:CDS |
| AAATATAATGGTCCAGATGT+AGG | 0.459994 | 8:+75970797 | MsG0880046634.01.T01:CDS |
| ATGTGGAAGGCCATTAGGAT+TGG | 0.461713 | 8:+75971182 | MsG0880046634.01.T01:CDS |
| TACTCTTGAACCTCACTAGC+TGG | 0.468245 | 8:-75971916 | None:intergenic |
| ATGCTTACACTTCCCCAAAC+AGG | 0.470526 | 8:+75970831 | MsG0880046634.01.T01:CDS |
| AGTTCTGACGAATTTGCTCT+TGG | 0.471190 | 8:-75971698 | None:intergenic |
| CCTTATGTTGGCTCCTCTGA+TGG | 0.473712 | 8:+75970764 | MsG0880046634.01.T01:CDS |
| TGGTCCAGATGTAGGTTTCA+AGG | 0.477646 | 8:+75970805 | MsG0880046634.01.T01:CDS |
| TGCTAGCATAAGAAGCGAGC+AGG | 0.478207 | 8:-75971963 | None:intergenic |
| AAATAAACGATTCCAGTGTC+AGG | 0.481590 | 8:-75971351 | None:intergenic |
| TATTCCTTGAAACCTACATC+TGG | 0.482961 | 8:-75970809 | None:intergenic |
| TGGGTTACATTCCCTCCATC+GGG | 0.492632 | 8:-75971270 | None:intergenic |
| CGAGGCAAAGCCGTACGCCT+TGG | 0.499175 | 8:-75971824 | None:intergenic |
| AGTAATATAGCTACTGATGA+TGG | 0.504220 | 8:-75970671 | None:intergenic |
| TGATTGAAACCCAATCCTAA+TGG | 0.505270 | 8:-75971192 | None:intergenic |
| ACCAATATCTCCAAGGCGTA+CGG | 0.508075 | 8:+75971814 | MsG0880046634.01.T01:CDS |
| CCATCAGAGGAGCCAACATA+AGG | 0.508307 | 8:-75970764 | None:intergenic |
| ACCGTCGTTTGGTTGGTGCT+AGG | 0.509218 | 8:-75971563 | None:intergenic |
| TACAATGGAAAACTCTATGC+TGG | 0.510601 | 8:+75971937 | MsG0880046634.01.T01:CDS |
| TTGGGTTACATTCCCTCCAT+CGG | 0.513844 | 8:-75971271 | None:intergenic |
| TTATCAAATGCAAGTGACTC+AGG | 0.517239 | 8:-75970728 | None:intergenic |
| GGGAATGTAACCCAATTAGT+TGG | 0.517432 | 8:+75971279 | MsG0880046634.01.T01:CDS |
| CTTGTTAAGGTTAGTCCCGA+TGG | 0.524295 | 8:+75971255 | MsG0880046634.01.T01:CDS |
| TAGCAACACCGTCGTTTGGT+TGG | 0.526062 | 8:-75971570 | None:intergenic |
| TCAGGTCCTGTCACTGGTGA+TGG | 0.530888 | 8:-75970710 | None:intergenic |
| AGTGACTCAGGTCCTGTCAC+TGG | 0.531219 | 8:-75970716 | None:intergenic |
| ATAGTAGAATTGCCTTGTGC+AGG | 0.536515 | 8:-75971303 | None:intergenic |
| AATTCTACTATGTTTGCTGA+TGG | 0.537613 | 8:+75971315 | MsG0880046634.01.T01:CDS |
| TTTGAAAATTCTTCCATCAG+AGG | 0.540669 | 8:-75970777 | None:intergenic |
| ATTCAAAGAGTATGGCTGAC+AGG | 0.543963 | 8:+75971674 | MsG0880046634.01.T01:CDS |
| GGTGTGGCAGTAAGCAAAGA+TGG | 0.552392 | 8:+75971614 | MsG0880046634.01.T01:CDS |
| TTGCTTACTGCCACACCAGA+TGG | 0.555964 | 8:-75971608 | None:intergenic |
| AGGCGTACGGCTTTGCCTCG+TGG | 0.561801 | 8:+75971827 | MsG0880046634.01.T01:CDS |
| GCTAGCATAAGAAGCGAGCA+GGG | 0.568395 | 8:-75971962 | None:intergenic |
| CAGCTACCATCACCAGTGAC+AGG | 0.576598 | 8:+75970704 | MsG0880046634.01.T01:CDS |
| AACGGTGAAGGACCTTATGT+TGG | 0.580918 | 8:+75970752 | MsG0880046634.01.T01:CDS |
| GAAGACCAAATAACATCAAG+AGG | 0.582125 | 8:+75971738 | MsG0880046634.01.T01:CDS |
| TTGGAAGTTAGTGCTAGCTA+TGG | 0.588516 | 8:-75971376 | None:intergenic |
| CAGTCCAAGCAACATGTGGA+AGG | 0.599866 | 8:+75971169 | MsG0880046634.01.T01:CDS |
| TACCAAACACTGCTAACTAG+TGG | 0.600039 | 8:+75971509 | MsG0880046634.01.T01:CDS |
| CAATTAGTTGGACCTGCACA+AGG | 0.606283 | 8:+75971291 | MsG0880046634.01.T01:CDS |
| GTTAAGGTTAGTCCCGATGG+AGG | 0.606836 | 8:+75971258 | MsG0880046634.01.T01:CDS |
| ATGTAGCTGATGCTTATTTG+GGG | 0.608065 | 8:+75971232 | MsG0880046634.01.T01:CDS |
| TGGTACTGAACCAGCTAGTG+AGG | 0.609133 | 8:+75971906 | MsG0880046634.01.T01:CDS |
| AGGAACAAGACAGTCTGTGA+TGG | 0.611137 | 8:+75971129 | MsG0880046634.01.T01:intron |
| AATATTTAGTTACCTGTTTG+GGG | 0.612782 | 8:-75970843 | None:intergenic |
| TCTTGCAATGCCATCTGGTG+TGG | 0.621845 | 8:+75971598 | MsG0880046634.01.T01:CDS |
| TTAAGGTTAGTCCCGATGGA+GGG | 0.624076 | 8:+75971259 | MsG0880046634.01.T01:CDS |
| TCAGCAGTCCAAGCAACATG+TGG | 0.630269 | 8:+75971165 | MsG0880046634.01.T01:CDS |
| TTAGATGTAGATCCTGACAC+TGG | 0.631098 | 8:+75971339 | MsG0880046634.01.T01:CDS |
| AATCATGATGAATATGGCAA+TGG | 0.636030 | 8:+75970607 | None:intergenic |
| AGTGAGGTTCAAGAGTACAA+TGG | 0.643469 | 8:+75971922 | MsG0880046634.01.T01:CDS |
| TAGGACTACCAATATCTCCA+AGG | 0.662210 | 8:+75971807 | MsG0880046634.01.T01:CDS |
| AACATCAAGAGGAATTCAGG+AGG | 0.674601 | 8:+75971749 | MsG0880046634.01.T01:CDS |
| TCCTAGCACCAACCAAACGA+CGG | 0.704747 | 8:+75971562 | MsG0880046634.01.T01:CDS |
| TCAGACACTCTGACTCCACG+AGG | 0.756470 | 8:-75971842 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTACTAAAAAAAAAAAAAA+AGG | - | Chr8:75970989-75971008 | None:intergenic | 10.0% |
| !!! | AATTTTTTTTATTTTGGATC+AGG | + | Chr8:75971109-75971128 | MsG0880046634.01.T01:intron | 15.0% |
| !!! | ACTTTACTTTATTTTTTGTA+GGG | + | Chr8:75971484-75971503 | MsG0880046634.01.T01:intron | 15.0% |
| !!! | TAGTACTTTTTCAAAATAAA+TGG | - | Chr8:75970920-75970939 | None:intergenic | 15.0% |
| !! | AAATATTTAGTTACCTGTTT+GGG | - | Chr8:75970847-75970866 | None:intergenic | 20.0% |
| !!! | CACTTTACTTTATTTTTTGT+AGG | + | Chr8:75971483-75971502 | MsG0880046634.01.T01:intron | 20.0% |
| !!! | GGAAGAATTTTCAAATATAA+TGG | + | Chr8:75970785-75970804 | MsG0880046634.01.T01:CDS | 20.0% |
| ! | AATATTTAGTTACCTGTTTG+GGG | - | Chr8:75970846-75970865 | None:intergenic | 25.0% |
| ! | GAAATATTTAGTTACCTGTT+TGG | - | Chr8:75970848-75970867 | None:intergenic | 25.0% |
| ! | TCACTTGCATTTGATAAAAA+CGG | + | Chr8:75970734-75970753 | MsG0880046634.01.T01:CDS | 25.0% |
| ! | TTGTTATAGTAATGCAGAAT+TGG | - | Chr8:75971458-75971477 | None:intergenic | 25.0% |
| !! | TCTTATGCTAGCATTTTTAT+CGG | + | Chr8:75971973-75971992 | MsG0880046634.01.T01:CDS | 25.0% |
| AAAACAATGCTTACTTGAGT+TGG | - | Chr8:75971398-75971417 | None:intergenic | 30.0% | |
| AAATATAATGGTCCAGATGT+AGG | + | Chr8:75970797-75970816 | MsG0880046634.01.T01:CDS | 30.0% | |
| AAATGGTCACTTAACTCATT+AGG | - | Chr8:75970903-75970922 | None:intergenic | 30.0% | |
| AATAACATCAAGAGGAATTC+AGG | + | Chr8:75971746-75971765 | MsG0880046634.01.T01:CDS | 30.0% | |
| AGTAATATAGCTACTGATGA+TGG | - | Chr8:75970674-75970693 | None:intergenic | 30.0% | |
| ATATAAACACAAAGTTCGTG+AGG | - | Chr8:75971039-75971058 | None:intergenic | 30.0% | |
| CAAACAGAATTCAAAGAGTA+TGG | + | Chr8:75971666-75971685 | MsG0880046634.01.T01:CDS | 30.0% | |
| GAATCTAGCTAGATAATAGT+TGG | - | Chr8:75970876-75970895 | None:intergenic | 30.0% | |
| GAATTCCTCTTGATGTTATT+TGG | - | Chr8:75971746-75971765 | None:intergenic | 30.0% | |
| TATGCACTGAAATCCAAAAT+TGG | - | Chr8:75971775-75971794 | None:intergenic | 30.0% | |
| TATGTAGCTGATGCTTATTT+GGG | + | Chr8:75971231-75971250 | MsG0880046634.01.T01:CDS | 30.0% | |
| TTTGAAAATTCTTCCATCAG+AGG | - | Chr8:75970780-75970799 | None:intergenic | 30.0% | |
| ! | AATTCTACTATGTTTGCTGA+TGG | + | Chr8:75971315-75971334 | MsG0880046634.01.T01:CDS | 30.0% |
| ! | ATTTCAGTGCATAGTGTTTT+AGG | + | Chr8:75971782-75971801 | MsG0880046634.01.T01:CDS | 30.0% |
| AAATAAACGATTCCAGTGTC+AGG | - | Chr8:75971354-75971373 | None:intergenic | 35.0% | |
| ATGTAGCTGATGCTTATTTG+GGG | + | Chr8:75971232-75971251 | MsG0880046634.01.T01:CDS | 35.0% | |
| GAAGACCAAATAACATCAAG+AGG | + | Chr8:75971738-75971757 | MsG0880046634.01.T01:CDS | 35.0% | |
| GCATTTGATAAAAACGGTGA+AGG | + | Chr8:75970740-75970759 | MsG0880046634.01.T01:CDS | 35.0% | |
| GTATGTAGCTGATGCTTATT+TGG | + | Chr8:75971230-75971249 | MsG0880046634.01.T01:CDS | 35.0% | |
| TACAATGGAAAACTCTATGC+TGG | + | Chr8:75971937-75971956 | MsG0880046634.01.T01:CDS | 35.0% | |
| TATTCCTTGAAACCTACATC+TGG | - | Chr8:75970812-75970831 | None:intergenic | 35.0% | |
| TGATTGAAACCCAATCCTAA+TGG | - | Chr8:75971195-75971214 | None:intergenic | 35.0% | |
| TTATCAAATGCAAGTGACTC+AGG | - | Chr8:75970731-75970750 | None:intergenic | 35.0% | |
| TTGGGTTTCAATCATCAAAC+AGG | + | Chr8:75971201-75971220 | MsG0880046634.01.T01:CDS | 35.0% | |
| ! | GAACTATTCATGCTACTTAC+TGG | + | Chr8:75971716-75971735 | MsG0880046634.01.T01:CDS | 35.0% |
| !!! | GTGCATAGTGTTTTAGGATT+AGG | + | Chr8:75971788-75971807 | MsG0880046634.01.T01:CDS | 35.0% |
| AACATCAAGAGGAATTCAGG+AGG | + | Chr8:75971749-75971768 | MsG0880046634.01.T01:CDS | 40.0% | |
| ATAGTAGAATTGCCTTGTGC+AGG | - | Chr8:75971306-75971325 | None:intergenic | 40.0% | |
| CTAACTAGTGGAGATAGTTC+GGG | + | Chr8:75971521-75971540 | MsG0880046634.01.T01:CDS | 40.0% | |
| GCTAACTAGTGGAGATAGTT+CGG | + | Chr8:75971520-75971539 | MsG0880046634.01.T01:CDS | 40.0% | |
| GGGAATGTAACCCAATTAGT+TGG | + | Chr8:75971279-75971298 | MsG0880046634.01.T01:CDS | 40.0% | |
| TACCAAACACTGCTAACTAG+TGG | + | Chr8:75971509-75971528 | MsG0880046634.01.T01:CDS | 40.0% | |
| TAGGACTACCAATATCTCCA+AGG | + | Chr8:75971807-75971826 | MsG0880046634.01.T01:CDS | 40.0% | |
| TTAGATGTAGATCCTGACAC+TGG | + | Chr8:75971339-75971358 | MsG0880046634.01.T01:CDS | 40.0% | |
| TTGGAAGTTAGTGCTAGCTA+TGG | - | Chr8:75971379-75971398 | None:intergenic | 40.0% | |
| TTGTGCAGGTCCAACTAATT+GGG | - | Chr8:75971292-75971311 | None:intergenic | 40.0% | |
| ! | AGTGAGGTTCAAGAGTACAA+TGG | + | Chr8:75971922-75971941 | MsG0880046634.01.T01:CDS | 40.0% |
| ! | AGTTCTGACGAATTTGCTCT+TGG | - | Chr8:75971701-75971720 | None:intergenic | 40.0% |
| ! | ATTCAAAGAGTATGGCTGAC+AGG | + | Chr8:75971674-75971693 | MsG0880046634.01.T01:CDS | 40.0% |
| !! | TGCTTATTTGGGGCTTGTTA+AGG | + | Chr8:75971242-75971261 | MsG0880046634.01.T01:CDS | 40.0% |
| AACGGTGAAGGACCTTATGT+TGG | + | Chr8:75970752-75970771 | MsG0880046634.01.T01:CDS | 45.0% | |
| ACCAATATCTCCAAGGCGTA+CGG | + | Chr8:75971814-75971833 | MsG0880046634.01.T01:CDS | 45.0% | |
| AGCAATCTTGCAATGCCATC+TGG | + | Chr8:75971593-75971612 | MsG0880046634.01.T01:CDS | 45.0% | |
| AGGAACAAGACAGTCTGTGA+TGG | + | Chr8:75971129-75971148 | MsG0880046634.01.T01:intron | 45.0% | |
| ATGCTTACACTTCCCCAAAC+AGG | + | Chr8:75970831-75970850 | MsG0880046634.01.T01:CDS | 45.0% | |
| ATGTGGAAGGCCATTAGGAT+TGG | + | Chr8:75971182-75971201 | MsG0880046634.01.T01:CDS | 45.0% | |
| CAATTAGTTGGACCTGCACA+AGG | + | Chr8:75971291-75971310 | MsG0880046634.01.T01:CDS | 45.0% | |
| CTCCACTAGTTAGCAGTGTT+TGG | - | Chr8:75971514-75971533 | None:intergenic | 45.0% | |
| CTTGTGCAGGTCCAACTAAT+TGG | - | Chr8:75971293-75971312 | None:intergenic | 45.0% | |
| TACTCTTGAACCTCACTAGC+TGG | - | Chr8:75971919-75971938 | None:intergenic | 45.0% | |
| TGGTCCAGATGTAGGTTTCA+AGG | + | Chr8:75970805-75970824 | MsG0880046634.01.T01:CDS | 45.0% | |
| TGTGGAAGGCCATTAGGATT+GGG | + | Chr8:75971183-75971202 | MsG0880046634.01.T01:CDS | 45.0% | |
| TTGGGTTACATTCCCTCCAT+CGG | - | Chr8:75971274-75971293 | None:intergenic | 45.0% | |
| ! | CTTGTTAAGGTTAGTCCCGA+TGG | + | Chr8:75971255-75971274 | MsG0880046634.01.T01:CDS | 45.0% |
| ! | GGAATTCAGGAGGCCAATTT+TGG | + | Chr8:75971759-75971778 | MsG0880046634.01.T01:CDS | 45.0% |
| ! | TTAAGGTTAGTCCCGATGGA+GGG | + | Chr8:75971259-75971278 | MsG0880046634.01.T01:CDS | 45.0% |
| !!! | AGAAATAATTTTTTTTATTT+TGG | + | Chr8:75971103-75971122 | MsG0880046634.01.T01:intron | 5.0% |
| ATGGCCTTCCACATGTTGCT+TGG | - | Chr8:75971176-75971195 | None:intergenic | 50.0% | |
| CAGTCCAAGCAACATGTGGA+AGG | + | Chr8:75971169-75971188 | MsG0880046634.01.T01:CDS | 50.0% | |
| CCATCAGAGGAGCCAACATA+AGG | - | Chr8:75970767-75970786 | None:intergenic | 50.0% | |
| GCAACATGTGGAAGGCCATT+AGG | + | Chr8:75971177-75971196 | MsG0880046634.01.T01:CDS | 50.0% | |
| GCATCTCTTGCTGCTGAGTA+TGG | + | Chr8:75971886-75971905 | MsG0880046634.01.T01:CDS | 50.0% | |
| GCTAGCATAAGAAGCGAGCA+GGG | - | Chr8:75971965-75971984 | None:intergenic | 50.0% | |
| GGTGTGGCAGTAAGCAAAGA+TGG | + | Chr8:75971614-75971633 | MsG0880046634.01.T01:CDS | 50.0% | |
| TAGCAACACCGTCGTTTGGT+TGG | - | Chr8:75971573-75971592 | None:intergenic | 50.0% | |
| TCAGCAGTCCAAGCAACATG+TGG | + | Chr8:75971165-75971184 | MsG0880046634.01.T01:CDS | 50.0% | |
| TCCTAGCACCAACCAAACGA+CGG | + | Chr8:75971562-75971581 | MsG0880046634.01.T01:CDS | 50.0% | |
| TCTTGCAATGCCATCTGGTG+TGG | + | Chr8:75971598-75971617 | MsG0880046634.01.T01:CDS | 50.0% | |
| TGCTAGCATAAGAAGCGAGC+AGG | - | Chr8:75971966-75971985 | None:intergenic | 50.0% | |
| TGCTTAGCAACACCGTCGTT+TGG | - | Chr8:75971577-75971596 | None:intergenic | 50.0% | |
| TGGGTTACATTCCCTCCATC+GGG | - | Chr8:75971273-75971292 | None:intergenic | 50.0% | |
| TTGCTTACTGCCACACCAGA+TGG | - | Chr8:75971611-75971630 | None:intergenic | 50.0% | |
| ! | GTTAAGGTTAGTCCCGATGG+AGG | + | Chr8:75971258-75971277 | MsG0880046634.01.T01:CDS | 50.0% |
| ! | TGGTACTGAACCAGCTAGTG+AGG | + | Chr8:75971906-75971925 | MsG0880046634.01.T01:CDS | 50.0% |
| !! | CCTTATGTTGGCTCCTCTGA+TGG | + | Chr8:75970764-75970783 | MsG0880046634.01.T01:CDS | 50.0% |
| AGTGACTCAGGTCCTGTCAC+TGG | - | Chr8:75970719-75970738 | None:intergenic | 55.0% | |
| CAGCTACCATCACCAGTGAC+AGG | + | Chr8:75970704-75970723 | MsG0880046634.01.T01:CDS | 55.0% | |
| GCCGTACGCCTTGGAGATAT+TGG | - | Chr8:75971818-75971837 | None:intergenic | 55.0% | |
| TCAGACACTCTGACTCCACG+AGG | - | Chr8:75971845-75971864 | None:intergenic | 55.0% | |
| TCAGGTCCTGTCACTGGTGA+TGG | - | Chr8:75970713-75970732 | None:intergenic | 55.0% | |
| ! | ACCGTCGTTTGGTTGGTGCT+AGG | - | Chr8:75971566-75971585 | None:intergenic | 55.0% |
| AGGCGTACGGCTTTGCCTCG+TGG | + | Chr8:75971827-75971846 | MsG0880046634.01.T01:CDS | 65.0% | |
| CGAGGCAAAGCCGTACGCCT+TGG | - | Chr8:75971827-75971846 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 75970620 | 75972021 | 75970620 | ID=MsG0880046634.01;Name=MsG0880046634.01 |
| Chr8 | mRNA | 75970620 | 75972021 | 75970620 | ID=MsG0880046634.01.T01;Parent=MsG0880046634.01;Name=MsG0880046634.01.T01;_AED=0.49;_eAED=0.51;_QI=0|0|0|1|1|1|3|0|340 |
| Chr8 | exon | 75970620 | 75970852 | 75970620 | ID=MsG0880046634.01.T01:exon:32387;Parent=MsG0880046634.01.T01 |
| Chr8 | exon | 75971131 | 75971403 | 75971131 | ID=MsG0880046634.01.T01:exon:32388;Parent=MsG0880046634.01.T01 |
| Chr8 | exon | 75971505 | 75972021 | 75971505 | ID=MsG0880046634.01.T01:exon:32389;Parent=MsG0880046634.01.T01 |
| Chr8 | CDS | 75970620 | 75970852 | 75970620 | ID=MsG0880046634.01.T01:cds;Parent=MsG0880046634.01.T01 |
| Chr8 | CDS | 75971131 | 75971403 | 75971131 | ID=MsG0880046634.01.T01:cds;Parent=MsG0880046634.01.T01 |
| Chr8 | CDS | 75971505 | 75972021 | 75971505 | ID=MsG0880046634.01.T01:cds;Parent=MsG0880046634.01.T01 |
| Gene Sequence |
| Protein sequence |
