Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046579.01.T01 | XP_003609162.2 | 86.826 | 334 | 15 | 1 | 1 | 305 | 14 | 347 | 0 | 580 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046579.01.T01 | P94111 | 40.789 | 304 | 143 | 7 | 27 | 301 | 27 | 322 | 3.15E-60 | 198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046579.01.T01 | A0A396IE01 | 86.826 | 334 | 15 | 1 | 1 | 305 | 14 | 347 | 0.0 | 580 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0880046579.01 | MsG0880046635.01 | 0.811991 | 5.307531e-51 | 3.333994e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0880046579.01 | MsG0880046634.01 | PPI |
| MsG0880046579.01 | MsG0880046635.01 | PPI |
| MsG0880046579.01 | MsG0880046580.01 | PPI |
| MsG0880046579.01 | MsG0280009252.01 | PPI |
| MsG0880046579.01 | MsG0880046636.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046579.01.T01 | MTR_4g112650 | 86.826 | 334 | 15 | 1 | 1 | 305 | 1 | 334 | 0.0 | 579 |
| MsG0880046579.01.T01 | MTR_4g112620 | 79.934 | 304 | 51 | 3 | 2 | 305 | 7 | 300 | 5.20e-173 | 481 |
| MsG0880046579.01.T01 | MTR_4g112630 | 73.214 | 336 | 50 | 2 | 1 | 306 | 1 | 326 | 2.17e-171 | 478 |
| MsG0880046579.01.T01 | MTR_4g112670 | 71.471 | 333 | 66 | 2 | 1 | 304 | 2 | 334 | 3.77e-167 | 468 |
| MsG0880046579.01.T01 | MTR_2g058450 | 49.180 | 305 | 127 | 2 | 26 | 302 | 28 | 332 | 8.73e-91 | 274 |
| MsG0880046579.01.T01 | MTR_0003s0530 | 63.536 | 181 | 37 | 2 | 145 | 296 | 1 | 181 | 6.70e-73 | 223 |
| MsG0880046579.01.T01 | MTR_7g490330 | 37.538 | 325 | 152 | 5 | 9 | 300 | 13 | 319 | 2.69e-63 | 203 |
| MsG0880046579.01.T01 | MTR_2g058410 | 46.552 | 232 | 96 | 1 | 102 | 305 | 1 | 232 | 2.46e-59 | 190 |
| MsG0880046579.01.T01 | MTR_7g490350 | 32.394 | 355 | 178 | 5 | 5 | 300 | 12 | 363 | 1.86e-57 | 189 |
| MsG0880046579.01.T01 | MTR_7g090300 | 33.696 | 368 | 171 | 8 | 1 | 300 | 1 | 363 | 5.58e-55 | 183 |
| MsG0880046579.01.T01 | MTR_5g091980 | 37.241 | 290 | 135 | 4 | 38 | 300 | 48 | 317 | 6.27e-55 | 181 |
| MsG0880046579.01.T01 | MTR_2g087780 | 35.398 | 339 | 155 | 9 | 25 | 304 | 60 | 393 | 3.53e-51 | 174 |
| MsG0880046579.01.T01 | MTR_7g090320 | 34.402 | 343 | 154 | 9 | 28 | 304 | 48 | 385 | 1.04e-49 | 170 |
| MsG0880046579.01.T01 | MTR_4g050190 | 34.675 | 323 | 148 | 8 | 36 | 300 | 68 | 385 | 1.18e-47 | 164 |
| MsG0880046579.01.T01 | MTR_2g099030 | 29.464 | 336 | 179 | 4 | 26 | 304 | 70 | 404 | 8.78e-47 | 162 |
| MsG0880046579.01.T01 | MTR_7g090310 | 34.251 | 327 | 155 | 8 | 38 | 304 | 58 | 384 | 6.29e-46 | 160 |
| MsG0880046579.01.T01 | MTR_4g112840 | 71.250 | 80 | 23 | 0 | 165 | 244 | 76 | 155 | 4.01e-33 | 120 |
| MsG0880046579.01.T01 | MTR_5g077620 | 73.810 | 84 | 19 | 3 | 4 | 87 | 2 | 82 | 3.06e-32 | 117 |
| MsG0880046579.01.T01 | MTR_2g058430 | 40.152 | 132 | 64 | 2 | 75 | 200 | 43 | 165 | 2.33e-22 | 94.4 |
| MsG0880046579.01.T01 | MTR_8g074210 | 29.185 | 233 | 114 | 5 | 36 | 241 | 76 | 284 | 1.35e-17 | 82.8 |
| MsG0880046579.01.T01 | MTR_8g074270 | 28.139 | 231 | 115 | 5 | 38 | 241 | 78 | 284 | 2.97e-16 | 79.0 |
| MsG0880046579.01.T01 | MTR_8g074170 | 28.139 | 231 | 115 | 5 | 38 | 241 | 78 | 284 | 5.95e-16 | 77.8 |
| MsG0880046579.01.T01 | MTR_2g042430 | 27.948 | 229 | 111 | 8 | 39 | 239 | 77 | 279 | 3.96e-13 | 69.7 |
| MsG0880046579.01.T01 | MTR_5g093640 | 40.816 | 98 | 12 | 2 | 209 | 306 | 52 | 103 | 8.25e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046579.01.T01 | AT1G74020 | 40.789 | 304 | 143 | 7 | 27 | 301 | 27 | 322 | 3.21e-61 | 198 |
| MsG0880046579.01.T01 | AT3G57030 | 37.224 | 317 | 143 | 5 | 37 | 300 | 55 | 368 | 3.55e-58 | 191 |
| MsG0880046579.01.T01 | AT1G74010 | 40.594 | 303 | 144 | 8 | 27 | 301 | 26 | 320 | 1.57e-57 | 188 |
| MsG0880046579.01.T01 | AT1G74000 | 38.944 | 303 | 150 | 7 | 27 | 301 | 29 | 324 | 1.02e-56 | 186 |
| MsG0880046579.01.T01 | AT3G57010 | 39.095 | 243 | 115 | 3 | 25 | 240 | 41 | 277 | 5.97e-56 | 186 |
| MsG0880046579.01.T01 | AT1G08470 | 35.826 | 321 | 146 | 7 | 36 | 300 | 67 | 383 | 8.57e-54 | 180 |
| MsG0880046579.01.T01 | AT5G22020 | 35.890 | 326 | 147 | 11 | 36 | 304 | 73 | 393 | 2.28e-50 | 171 |
| MsG0880046579.01.T01 | AT5G22020 | 35.890 | 326 | 147 | 11 | 36 | 304 | 73 | 393 | 2.28e-50 | 171 |
| MsG0880046579.01.T01 | AT5G22020 | 35.890 | 326 | 147 | 11 | 36 | 304 | 73 | 393 | 2.28e-50 | 171 |
| MsG0880046579.01.T01 | AT3G57020 | 36.885 | 244 | 121 | 2 | 25 | 241 | 40 | 277 | 1.09e-49 | 169 |
| MsG0880046579.01.T01 | AT2G41290 | 35.185 | 324 | 147 | 10 | 38 | 301 | 51 | 371 | 1.57e-46 | 161 |
| MsG0880046579.01.T01 | AT2G41300 | 31.818 | 308 | 151 | 5 | 43 | 297 | 83 | 384 | 1.70e-45 | 159 |
| MsG0880046579.01.T01 | AT3G57020 | 34.979 | 243 | 111 | 2 | 25 | 240 | 40 | 262 | 5.73e-45 | 156 |
| MsG0880046579.01.T01 | AT3G59530 | 33.469 | 245 | 130 | 3 | 29 | 241 | 75 | 318 | 1.25e-41 | 149 |
| MsG0880046579.01.T01 | AT3G59530 | 33.469 | 245 | 130 | 3 | 29 | 241 | 75 | 318 | 1.25e-41 | 149 |
| MsG0880046579.01.T01 | AT3G59530 | 33.469 | 245 | 130 | 3 | 29 | 241 | 75 | 318 | 1.25e-41 | 149 |
| MsG0880046579.01.T01 | AT3G51440 | 24.521 | 261 | 140 | 8 | 16 | 241 | 40 | 278 | 2.96e-12 | 67.0 |
Find 75 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTCAGGAGGCCAATTT+TGG | 0.196374 | 8:+75076793 | MsG0880046579.01.T01:CDS |
| TATGTAGCTGATGCTTATTT+TGG | 0.237520 | 8:+75076003 | MsG0880046579.01.T01:CDS |
| TACTAACTGATATCCAAAAT+TGG | 0.256590 | 8:-75076806 | None:intergenic |
| GAATTCCTCTTGATGTTATC+TGG | 0.291665 | 8:-75076777 | None:intergenic |
| GCAATATGTGGAAGACCTTT+AGG | 0.300362 | 8:+75075949 | MsG0880046579.01.T01:CDS |
| GATAACATCAAGAGGAATTC+AGG | 0.341738 | 8:+75076780 | MsG0880046579.01.T01:CDS |
| AAATATGTTGGTTCAAATGA+AGG | 0.369592 | 8:+75075565 | MsG0880046579.01.T01:CDS |
| CTTGATGTTATCTGGTCTTC+CGG | 0.376966 | 8:-75076769 | None:intergenic |
| ATCGGCAAACATAGTTGAAT+TGG | 0.376978 | 8:-75076085 | None:intergenic |
| AACTATGTTTGCCGATGGTT+TGG | 0.379978 | 8:+75076092 | MsG0880046579.01.T01:CDS |
| TGAGTTGCATTCCCACCATT+GGG | 0.382610 | 8:-75076042 | None:intergenic |
| GAATTATTCATGCTACTTGC+CGG | 0.383828 | 8:+75076750 | MsG0880046579.01.T01:CDS |
| TGAACCTCACTAGCCGCTTC+AGG | 0.389938 | 8:-75076939 | None:intergenic |
| GTGTCTCTTGTTGAAGAGTA+TGG | 0.394726 | 8:+75076915 | MsG0880046579.01.T01:CDS |
| GGATGTTCTACTTTACCTTC+AGG | 0.402383 | 8:+75076855 | MsG0880046579.01.T01:CDS |
| TGTGGAAGACCTTTAGGATT+GGG | 0.405892 | 8:+75075955 | MsG0880046579.01.T01:CDS |
| GGTGTTAGAGTGAATGAAAA+TGG | 0.407349 | 8:+75076876 | MsG0880046579.01.T01:CDS |
| TTGAGTTGCATTCCCACCAT+TGG | 0.429082 | 8:-75076043 | None:intergenic |
| GTAGAACATCCTGGAGATCT+TGG | 0.431021 | 8:-75076843 | None:intergenic |
| GATTTATATATTTACCTGTT+GGG | 0.432026 | 8:-75075613 | None:intergenic |
| GAGTACAATGGAACACTCTA+TGG | 0.432828 | 8:+75076963 | MsG0880046579.01.T01:CDS |
| CGATGGTTTGGATGTAGATC+CGG | 0.453120 | 8:+75076104 | MsG0880046579.01.T01:CDS |
| TGGTTCAAATGAAGGTTTCA+AGG | 0.454128 | 8:+75075573 | MsG0880046579.01.T01:CDS |
| TCAGGTCCTGTCACTGGTGC+TGG | 0.455170 | 8:-75075478 | None:intergenic |
| CTGAAGCTTGTTCAGTAATA+CGG | 0.466301 | 8:-75075452 | None:intergenic |
| AAGAATCTTACAGTGCCATC+TGG | 0.469917 | 8:+75076627 | MsG0880046579.01.T01:CDS |
| CTTGTTAAGGTTGGCCCCAA+TGG | 0.472047 | 8:+75076027 | MsG0880046579.01.T01:CDS |
| AGTAATACGGCTACCGATGA+TGG | 0.472632 | 8:-75075439 | None:intergenic |
| AAGGTCTTCCACATATTGCT+TGG | 0.472662 | 8:-75075945 | None:intergenic |
| TTAGGGACACCAAGATCTCC+AGG | 0.481801 | 8:+75076834 | MsG0880046579.01.T01:CDS |
| ATGCTTACACTTCTCCCAAC+AGG | 0.489728 | 8:+75075599 | MsG0880046579.01.T01:CDS |
| GTTAAGGTTGGCCCCAATGG+TGG | 0.492288 | 8:+75076030 | MsG0880046579.01.T01:CDS |
| ATGTGGAAGACCTTTAGGAT+TGG | 0.494905 | 8:+75075954 | MsG0880046579.01.T01:CDS |
| AAATAAACGACTCCAGTGTC+CGG | 0.502679 | 8:-75076123 | None:intergenic |
| GGGAATGCAACTCAATTAGT+TGG | 0.502687 | 8:+75076051 | MsG0880046579.01.T01:CDS |
| AGTGACTCAGGTCCTGTCAC+TGG | 0.505698 | 8:-75075484 | None:intergenic |
| TCATTCACTCTAACACCTGA+AGG | 0.522134 | 8:-75076870 | None:intergenic |
| GGAGTGGCAGTAAGCAAAGA+TGG | 0.525475 | 8:+75076648 | MsG0880046579.01.T01:CDS |
| CTATCAAATGCAAGTGACTC+AGG | 0.525659 | 8:-75075496 | None:intergenic |
| CCATCAGAAGAAGTAACATA+AGG | 0.525792 | 8:-75075532 | None:intergenic |
| TCTACTGCGTTCTCCATCAT+CGG | 0.525948 | 8:+75075426 | MsG0880046579.01.T01:CDS |
| CCTTATGTTACTTCTTCTGA+TGG | 0.527626 | 8:+75075532 | MsG0880046579.01.T01:CDS |
| GACAGTGACAACCATCGACT+TGG | 0.528736 | 8:-75075386 | None:intergenic |
| TCACTTGCATTTGATAGAAA+CGG | 0.530670 | 8:+75075502 | MsG0880046579.01.T01:CDS |
| AGGTTGCATAAGAAGCAAGC+AGG | 0.532375 | 8:-75076992 | None:intergenic |
| ATTCAGCGAGTGTGGTTGAA+AGG | 0.546046 | 8:+75076708 | MsG0880046579.01.T01:CDS |
| TCAGTAGTCCAAGCAATATG+TGG | 0.548585 | 8:+75075937 | MsG0880046579.01.T01:CDS |
| AATTCTGATGAATTTGCTCT+CGG | 0.549648 | 8:-75076732 | None:intergenic |
| CAGCTACCAGCACCAGTGAC+AGG | 0.551193 | 8:+75075472 | MsG0880046579.01.T01:CDS |
| TTGCTTACTGCCACTCCAGA+TGG | 0.551639 | 8:-75076642 | None:intergenic |
| GAAGGTAAAGTAGAACATCC+TGG | 0.568828 | 8:-75076852 | None:intergenic |
| AATTCAACTATGTTTGCCGA+TGG | 0.570302 | 8:+75076087 | MsG0880046579.01.T01:CDS |
| CAAACAGAATTCAGCGAGTG+TGG | 0.570481 | 8:+75076700 | MsG0880046579.01.T01:CDS |
| TAATACCATGTCCAAGTCGA+TGG | 0.572475 | 8:+75075375 | None:intergenic |
| TTAAGGTTGGCCCCAATGGT+GGG | 0.574022 | 8:+75076031 | MsG0880046579.01.T01:CDS |
| TTGGATGTAGATCCGGACAC+TGG | 0.580301 | 8:+75076111 | MsG0880046579.01.T01:CDS |
| TGATTGAAACCCAATCCTAA+AGG | 0.582627 | 8:-75075964 | None:intergenic |
| TGGTCCTGAAGCGGCTAGTG+AGG | 0.589941 | 8:+75076935 | MsG0880046579.01.T01:CDS |
| ATAGTTGAATTGGCTTGTGT+CGG | 0.596354 | 8:-75076075 | None:intergenic |
| GGTTGCATAAGAAGCAAGCA+GGG | 0.600341 | 8:-75076991 | None:intergenic |
| CTTGTAATTAGAGCTAGCTA+TGG | 0.601850 | 8:-75076148 | None:intergenic |
| AAAACTCTAGGGAGTAAATG+AGG | 0.602595 | 8:-75077012 | None:intergenic |
| TCTTACAGTGCCATCTGGAG+TGG | 0.604508 | 8:+75076632 | MsG0880046579.01.T01:CDS |
| CGGATCTACATCCAAACCAT+CGG | 0.609491 | 8:-75076103 | None:intergenic |
| GACAACCATCGACTTGGACA+TGG | 0.613511 | 8:-75075380 | None:intergenic |
| GCATTTGATAGAAACGGTGG+AGG | 0.636595 | 8:+75075508 | MsG0880046579.01.T01:CDS |
| AGGAATAGGACAGTCTGTGA+TGG | 0.636740 | 8:+75075901 | MsG0880046579.01.T01:intron |
| GAGTTGCATTCCCACCATTG+GGG | 0.641897 | 8:-75076041 | None:intergenic |
| CTTGCATTTGATAGAAACGG+TGG | 0.644459 | 8:+75075505 | MsG0880046579.01.T01:CDS |
| GAAGACCAGATAACATCAAG+AGG | 0.646688 | 8:+75076772 | MsG0880046579.01.T01:CDS |
| TACAATGGAACACTCTATGG+TGG | 0.656288 | 8:+75076966 | MsG0880046579.01.T01:CDS |
| AGTGAGGTTCAAGAGTACAA+TGG | 0.673039 | 8:+75076951 | MsG0880046579.01.T01:CDS |
| TGAAGAGTATGGTCCTGAAG+CGG | 0.674281 | 8:+75076926 | MsG0880046579.01.T01:CDS |
| GGACTACTGAGAAGTCAGCA+AGG | 0.682750 | 8:-75075924 | None:intergenic |
| AACATCAAGAGGAATTCAGG+AGG | 0.698815 | 8:+75076783 | MsG0880046579.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAATTATATTATTGTTTA+TGG | + | Chr8:75076477-75076496 | MsG0880046579.01.T01:intron | 10.0% |
| !!! | AATGACTGTTTTTTATTTTT+TGG | + | Chr8:75075875-75075894 | MsG0880046579.01.T01:intron | 15.0% |
| !! | AAGCAAAAATAGAAAATAAC+AGG | - | Chr8:75076433-75076452 | None:intergenic | 20.0% |
| !! | GATTTATATATTTACCTGTT+GGG | - | Chr8:75075616-75075635 | None:intergenic | 20.0% |
| !! | TGATTTATATATTTACCTGT+TGG | - | Chr8:75075617-75075636 | None:intergenic | 20.0% |
| !!! | ATATCAGTTAGTAGTTTTTT+AGG | + | Chr8:75076816-75076835 | MsG0880046579.01.T01:CDS | 20.0% |
| !!! | GATATTTTATGAGAAGAAAT+GGG | - | Chr8:75076232-75076251 | None:intergenic | 20.0% |
| !!! | TATCAGTTAGTAGTTTTTTA+GGG | + | Chr8:75076817-75076836 | MsG0880046579.01.T01:CDS | 20.0% |
| !!! | TGATATTTTATGAGAAGAAA+TGG | - | Chr8:75076233-75076252 | None:intergenic | 20.0% |
| !!! | TGTTTTTTATTTTTTGGTTC+AGG | + | Chr8:75075881-75075900 | MsG0880046579.01.T01:intron | 20.0% |
| ! | TACTAACTGATATCCAAAAT+TGG | - | Chr8:75076809-75076828 | None:intergenic | 25.0% |
| !! | GGAAGAATTTTCAAATATGT+TGG | + | Chr8:75075553-75075572 | MsG0880046579.01.T01:CDS | 25.0% |
| !!! | AAATATGTTGGTTCAAATGA+AGG | + | Chr8:75075565-75075584 | MsG0880046579.01.T01:CDS | 25.0% |
| !!! | TTATTTTTTGGTTCAGGAAT+AGG | + | Chr8:75075887-75075906 | MsG0880046579.01.T01:intron | 25.0% |
| TCACTTGCATTTGATAGAAA+CGG | + | Chr8:75075502-75075521 | MsG0880046579.01.T01:CDS | 30.0% | |
| TGAATCCTACAAATTATTCG+AGG | - | Chr8:75076461-75076480 | None:intergenic | 30.0% | |
| ! | AATTCTGATGAATTTGCTCT+CGG | - | Chr8:75076735-75076754 | None:intergenic | 30.0% |
| ! | AGATGCTTTCTAAAAGAACA+CGG | - | Chr8:75075744-75075763 | None:intergenic | 30.0% |
| ! | TATGTAGCTGATGCTTATTT+TGG | + | Chr8:75076003-75076022 | MsG0880046579.01.T01:CDS | 30.0% |
| ! | TCTTTCCTCGAATAATTTGT+AGG | + | Chr8:75076453-75076472 | MsG0880046579.01.T01:intron | 30.0% |
| !!! | TATTTTGGACTTGTTAAGGT+TGG | + | Chr8:75076018-75076037 | MsG0880046579.01.T01:CDS | 30.0% |
| !!! | TGCTTATTTTGGACTTGTTA+AGG | + | Chr8:75076014-75076033 | MsG0880046579.01.T01:CDS | 30.0% |
| AACGATCACTTGATTCATGT+TGG | - | Chr8:75075656-75075675 | None:intergenic | 35.0% | |
| AATTCAACTATGTTTGCCGA+TGG | + | Chr8:75076087-75076106 | MsG0880046579.01.T01:CDS | 35.0% | |
| ACGATCACTTGATTCATGTT+GGG | - | Chr8:75075655-75075674 | None:intergenic | 35.0% | |
| ATCGGCAAACATAGTTGAAT+TGG | - | Chr8:75076088-75076107 | None:intergenic | 35.0% | |
| CCATCAGAAGAAGTAACATA+AGG | - | Chr8:75075535-75075554 | None:intergenic | 35.0% | |
| CTTGTAATTAGAGCTAGCTA+TGG | - | Chr8:75076151-75076170 | None:intergenic | 35.0% | |
| GAATTCCTCTTGATGTTATC+TGG | - | Chr8:75076780-75076799 | None:intergenic | 35.0% | |
| GATAACATCAAGAGGAATTC+AGG | + | Chr8:75076780-75076799 | MsG0880046579.01.T01:CDS | 35.0% | |
| GGTGTTAGAGTGAATGAAAA+TGG | + | Chr8:75076876-75076895 | MsG0880046579.01.T01:CDS | 35.0% | |
| TGACAAATGTGAATGTCACT+TGG | + | Chr8:75076501-75076520 | MsG0880046579.01.T01:intron | 35.0% | |
| TGATTGAAACCCAATCCTAA+AGG | - | Chr8:75075967-75075986 | None:intergenic | 35.0% | |
| TGCTTGGATCATATCTCAAT+AGG | - | Chr8:75076585-75076604 | None:intergenic | 35.0% | |
| TGGTTCAAATGAAGGTTTCA+AGG | + | Chr8:75075573-75075592 | MsG0880046579.01.T01:CDS | 35.0% | |
| TTCCATCCATGTAAGATATG+AGG | - | Chr8:75076406-75076425 | None:intergenic | 35.0% | |
| TTCTTAGCAACACTGTTGTT+TGG | - | Chr8:75076612-75076631 | None:intergenic | 35.0% | |
| ! | CCTTATGTTACTTCTTCTGA+TGG | + | Chr8:75075532-75075551 | MsG0880046579.01.T01:CDS | 35.0% |
| ! | CTGAAGCTTGTTCAGTAATA+CGG | - | Chr8:75075455-75075474 | None:intergenic | 35.0% |
| ! | GAATTATTCATGCTACTTGC+CGG | + | Chr8:75076750-75076769 | MsG0880046579.01.T01:CDS | 35.0% |
| !! | ATAGTTGAATTGGCTTGTGT+CGG | - | Chr8:75076078-75076097 | None:intergenic | 35.0% |
| AAATAAACGACTCCAGTGTC+CGG | - | Chr8:75076126-75076145 | None:intergenic | 40.0% | |
| AACATCAAGAGGAATTCAGG+AGG | + | Chr8:75076783-75076802 | MsG0880046579.01.T01:CDS | 40.0% | |
| AACTATGTTTGCCGATGGTT+TGG | + | Chr8:75076092-75076111 | MsG0880046579.01.T01:CDS | 40.0% | |
| AAGAATCTTACAGTGCCATC+TGG | + | Chr8:75076627-75076646 | MsG0880046579.01.T01:CDS | 40.0% | |
| AAGGTCTTCCACATATTGCT+TGG | - | Chr8:75075948-75075967 | None:intergenic | 40.0% | |
| CACCTCATATCTTACATGGA+TGG | + | Chr8:75076401-75076420 | MsG0880046579.01.T01:intron | 40.0% | |
| CTATCAAATGCAAGTGACTC+AGG | - | Chr8:75075499-75075518 | None:intergenic | 40.0% | |
| CTTGCATTTGATAGAAACGG+TGG | + | Chr8:75075505-75075524 | MsG0880046579.01.T01:CDS | 40.0% | |
| GAAGACCAGATAACATCAAG+AGG | + | Chr8:75076772-75076791 | MsG0880046579.01.T01:CDS | 40.0% | |
| GAAGGTAAAGTAGAACATCC+TGG | - | Chr8:75076855-75076874 | None:intergenic | 40.0% | |
| GAGTACAATGGAACACTCTA+TGG | + | Chr8:75076963-75076982 | MsG0880046579.01.T01:CDS | 40.0% | |
| GCAATATGTGGAAGACCTTT+AGG | + | Chr8:75075949-75075968 | MsG0880046579.01.T01:CDS | 40.0% | |
| GGATGTTCTACTTTACCTTC+AGG | + | Chr8:75076855-75076874 | MsG0880046579.01.T01:CDS | 40.0% | |
| GGGAATGCAACTCAATTAGT+TGG | + | Chr8:75076051-75076070 | MsG0880046579.01.T01:CDS | 40.0% | |
| GTGTCTCTTGTTGAAGAGTA+TGG | + | Chr8:75076915-75076934 | MsG0880046579.01.T01:CDS | 40.0% | |
| TACAATGGAACACTCTATGG+TGG | + | Chr8:75076966-75076985 | MsG0880046579.01.T01:CDS | 40.0% | |
| TCAGTAGTCCAAGCAATATG+TGG | + | Chr8:75075937-75075956 | MsG0880046579.01.T01:CDS | 40.0% | |
| TCATTCACTCTAACACCTGA+AGG | - | Chr8:75076873-75076892 | None:intergenic | 40.0% | |
| TTACAGAGATTTCCAGACAG+TGG | + | Chr8:75076528-75076547 | MsG0880046579.01.T01:intron | 40.0% | |
| ! | AGTGAGGTTCAAGAGTACAA+TGG | + | Chr8:75076951-75076970 | MsG0880046579.01.T01:CDS | 40.0% |
| ! | CTTGATGTTATCTGGTCTTC+CGG | - | Chr8:75076772-75076791 | None:intergenic | 40.0% |
| ! | TAGCAACACTGTTGTTTGGT+TGG | - | Chr8:75076608-75076627 | None:intergenic | 40.0% |
| !! | ATGTGGAAGACCTTTAGGAT+TGG | + | Chr8:75075954-75075973 | MsG0880046579.01.T01:CDS | 40.0% |
| !! | TGTGGAAGACCTTTAGGATT+GGG | + | Chr8:75075955-75075974 | MsG0880046579.01.T01:CDS | 40.0% |
| AGCGCACCTCATATCTTACA+TGG | + | Chr8:75076397-75076416 | MsG0880046579.01.T01:intron | 45.0% | |
| AGGAATAGGACAGTCTGTGA+TGG | + | Chr8:75075901-75075920 | MsG0880046579.01.T01:intron | 45.0% | |
| AGGTTGCATAAGAAGCAAGC+AGG | - | Chr8:75076995-75077014 | None:intergenic | 45.0% | |
| AGTAATACGGCTACCGATGA+TGG | - | Chr8:75075442-75075461 | None:intergenic | 45.0% | |
| AGTGGCAGTGGAGATAATTC+AGG | + | Chr8:75076556-75076575 | MsG0880046579.01.T01:intron | 45.0% | |
| ATGCTTACACTTCTCCCAAC+AGG | + | Chr8:75075599-75075618 | MsG0880046579.01.T01:CDS | 45.0% | |
| ATTCAGCGAGTGTGGTTGAA+AGG | + | Chr8:75076708-75076727 | MsG0880046579.01.T01:CDS | 45.0% | |
| CAAACAGAATTCAGCGAGTG+TGG | + | Chr8:75076700-75076719 | MsG0880046579.01.T01:CDS | 45.0% | |
| CGGATCTACATCCAAACCAT+CGG | - | Chr8:75076106-75076125 | None:intergenic | 45.0% | |
| GCATTTGATAGAAACGGTGG+AGG | + | Chr8:75075508-75075527 | MsG0880046579.01.T01:CDS | 45.0% | |
| GGTTGCATAAGAAGCAAGCA+GGG | - | Chr8:75076994-75077013 | None:intergenic | 45.0% | |
| GTAGAACATCCTGGAGATCT+TGG | - | Chr8:75076846-75076865 | None:intergenic | 45.0% | |
| TCTACTGCGTTCTCCATCAT+CGG | + | Chr8:75075426-75075445 | MsG0880046579.01.T01:CDS | 45.0% | |
| TGAGTTGCATTCCCACCATT+GGG | - | Chr8:75076045-75076064 | None:intergenic | 45.0% | |
| ! | ACTGTTGTTTGGTTGGTGCT+TGG | - | Chr8:75076601-75076620 | None:intergenic | 45.0% |
| ! | CGATGGTTTGGATGTAGATC+CGG | + | Chr8:75076104-75076123 | MsG0880046579.01.T01:CDS | 45.0% |
| ! | GGAATTCAGGAGGCCAATTT+TGG | + | Chr8:75076793-75076812 | MsG0880046579.01.T01:CDS | 45.0% |
| ! | TGAAGAGTATGGTCCTGAAG+CGG | + | Chr8:75076926-75076945 | MsG0880046579.01.T01:CDS | 45.0% |
| ! | TTGAGTTGCATTCCCACCAT+TGG | - | Chr8:75076046-75076065 | None:intergenic | 45.0% |
| GAGTTGCATTCCCACCATTG+GGG | - | Chr8:75076044-75076063 | None:intergenic | 50.0% | |
| GGACTACTGAGAAGTCAGCA+AGG | - | Chr8:75075927-75075946 | None:intergenic | 50.0% | |
| GGAGTGGCAGTAAGCAAAGA+TGG | + | Chr8:75076648-75076667 | MsG0880046579.01.T01:CDS | 50.0% | |
| TCTTACAGTGCCATCTGGAG+TGG | + | Chr8:75076632-75076651 | MsG0880046579.01.T01:CDS | 50.0% | |
| TTAGGGACACCAAGATCTCC+AGG | + | Chr8:75076834-75076853 | MsG0880046579.01.T01:CDS | 50.0% | |
| TTCCAGACAGTGGTAGCTAG+TGG | + | Chr8:75076538-75076557 | MsG0880046579.01.T01:intron | 50.0% | |
| TTGCTTACTGCCACTCCAGA+TGG | - | Chr8:75076645-75076664 | None:intergenic | 50.0% | |
| TTGGATGTAGATCCGGACAC+TGG | + | Chr8:75076111-75076130 | MsG0880046579.01.T01:CDS | 50.0% | |
| ! | CTTGTTAAGGTTGGCCCCAA+TGG | + | Chr8:75076027-75076046 | MsG0880046579.01.T01:CDS | 50.0% |
| ! | GACAGTGACAACCATCGACT+TGG | - | Chr8:75075389-75075408 | None:intergenic | 50.0% |
| ! | TTAAGGTTGGCCCCAATGGT+GGG | + | Chr8:75076031-75076050 | MsG0880046579.01.T01:CDS | 50.0% |
| ACAGTGGTAGCTAGTGGCAG+TGG | + | Chr8:75076544-75076563 | MsG0880046579.01.T01:intron | 55.0% | |
| AGTGACTCAGGTCCTGTCAC+TGG | - | Chr8:75075487-75075506 | None:intergenic | 55.0% | |
| TGAACCTCACTAGCCGCTTC+AGG | - | Chr8:75076942-75076961 | None:intergenic | 55.0% | |
| TGCCACTAGCTACCACTGTC+TGG | - | Chr8:75076543-75076562 | None:intergenic | 55.0% | |
| ! | GTTAAGGTTGGCCCCAATGG+TGG | + | Chr8:75076030-75076049 | MsG0880046579.01.T01:CDS | 55.0% |
| CAGCTACCAGCACCAGTGAC+AGG | + | Chr8:75075472-75075491 | MsG0880046579.01.T01:CDS | 60.0% | |
| TCAGGTCCTGTCACTGGTGC+TGG | - | Chr8:75075481-75075500 | None:intergenic | 60.0% | |
| TGGTCCTGAAGCGGCTAGTG+AGG | + | Chr8:75076935-75076954 | MsG0880046579.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 75075382 | 75077028 | 75075382 | ID=MsG0880046579.01;Name=MsG0880046579.01 |
| Chr8 | mRNA | 75075382 | 75077028 | 75075382 | ID=MsG0880046579.01.T01;Parent=MsG0880046579.01;Name=MsG0880046579.01.T01;_AED=0.39;_eAED=0.39;_QI=0|0|0|1|1|1|3|0|306 |
| Chr8 | exon | 75075382 | 75075620 | 75075382 | ID=MsG0880046579.01.T01:exon:31464;Parent=MsG0880046579.01.T01 |
| Chr8 | exon | 75075903 | 75076175 | 75075903 | ID=MsG0880046579.01.T01:exon:31465;Parent=MsG0880046579.01.T01 |
| Chr8 | exon | 75076620 | 75077028 | 75076620 | ID=MsG0880046579.01.T01:exon:31466;Parent=MsG0880046579.01.T01 |
| Chr8 | CDS | 75075382 | 75075620 | 75075382 | ID=MsG0880046579.01.T01:cds;Parent=MsG0880046579.01.T01 |
| Chr8 | CDS | 75075903 | 75076175 | 75075903 | ID=MsG0880046579.01.T01:cds;Parent=MsG0880046579.01.T01 |
| Chr8 | CDS | 75076620 | 75077028 | 75076620 | ID=MsG0880046579.01.T01:cds;Parent=MsG0880046579.01.T01 |
| Gene Sequence |
| Protein sequence |
