AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009425.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009425.01.T01 MTR_1g115920 93.103 464 25 2 266 723 372 834 0.0 801
MsG0280009425.01.T01 MTR_1g115920 46.067 178 14 7 4 117 43 202 1.31e-23 107
MsG0280009425.01.T01 MTR_4g094355 89.005 191 18 1 536 723 250 440 4.22e-112 346
MsG0280009425.01.T01 MTR_4g094355 79.253 241 16 2 212 452 45 251 1.31e-109 340
MsG0280009425.01.T01 MTR_4g094355 83.721 43 7 0 34 76 2 44 2.03e-12 70.5
MsG0280009425.01.T01 MTR_5g039050 85.650 223 23 3 416 638 67 280 3.15e-109 338
MsG0280009425.01.T01 MTR_5g039050 80.000 45 8 1 278 321 6 50 1.83e-13 73.6
MsG0280009425.01.T01 MTR_5g039100 54.878 164 29 5 3 123 5 166 6.43e-36 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009425.01.T01 AT1G28060 49.342 760 306 14 2 720 65 786 0.0 621
MsG0280009425.01.T01 AT1G28060 49.342 760 306 14 2 720 65 786 0.0 621
MsG0280009425.01.T01 AT1G28060 49.342 760 306 14 2 720 65 786 0.0 621
MsG0280009425.01.T01 AT3G55930 62.214 262 96 3 459 717 9 270 3.07e-96 299
MsG0280009425.01.T01 AT3G56790 68.333 60 18 1 484 542 144 203 1.76e-11 64.7

Find 199 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACACCAGAACACATTTAT+TGG 0.127318 2:-51738184 None:intergenic
ATAAAATTGAAGAGTAAATT+TGG 0.190886 2:+51737313 MsG0280009425.01.T01:CDS
CTCATCTTGACCTTTGGTTT+TGG 0.219944 2:-51737745 None:intergenic
TGCTGGGGTTCCTCATTATT+GGG 0.233213 2:+51738293 MsG0280009425.01.T01:CDS
AATTGGATGATAAGAGAATT+AGG 0.237950 2:+51735096 MsG0280009425.01.T01:CDS
ATGCTGGGGTTCCTCATTAT+TGG 0.242299 2:+51738292 MsG0280009425.01.T01:CDS
CTTCTGCATTCTGGAAATTA+TGG 0.253483 2:+51737496 MsG0280009425.01.T01:CDS
ACAGGTGTGTCCAATGTATT+TGG 0.256768 2:-51737940 None:intergenic
AGAAGGAACGTAGGAGATTT+GGG 0.270274 2:+51735132 MsG0280009425.01.T01:CDS
TGATGAATGCAAACTGAAAA+TGG 0.271409 2:+51737543 MsG0280009425.01.T01:CDS
ACACACCTGTCTCACTTTAC+AGG 0.272620 2:+51737953 MsG0280009425.01.T01:CDS
TGGAGATTGGTGGCAGAGTT+TGG 0.286278 2:+51736459 MsG0280009425.01.T01:CDS
AAGAAGGAACGTAGGAGATT+TGG 0.290068 2:+51735131 MsG0280009425.01.T01:CDS
CTTTGCTAGCTGTGCTTGTT+TGG 0.291419 2:-51737362 None:intergenic
CTCCTTAGCTATACGCCTTT+GGG 0.294775 2:-51737680 None:intergenic
CTGCTCCTGTTTAGTTAGCT+TGG 0.303650 2:-51737644 None:intergenic
ACGTCCCACCACTCAATATC+TGG 0.306527 2:-51737469 None:intergenic
TCTCCTTAGCTATACGCCTT+TGG 0.307916 2:-51737681 None:intergenic
TTGGGAGGTTGAGGTGGTGG+AGG 0.312517 2:-51737625 None:intergenic
TGCTCCTGTTTAGTTAGCTT+GGG 0.318790 2:-51737643 None:intergenic
AACCAACCTTAGCACATTAA+AGG 0.319646 2:+51737108 MsG0280009425.01.T01:CDS
CGTGAAGTGTTTGTGGATGC+TGG 0.322935 2:+51738276 MsG0280009425.01.T01:CDS
CACCACTCAATATCTGGAAT+TGG 0.327730 2:-51737463 None:intergenic
GGTGGAGGGGCGGGCTCAGC+AGG 0.333316 2:-51737610 None:intergenic
GACGTGGCACTTCTGCATTC+TGG 0.335270 2:+51737487 MsG0280009425.01.T01:CDS
AGCTTGGGAGGTTGAGGTGG+TGG 0.339497 2:-51737628 None:intergenic
GTTCATCTATTTCACGTCCC+TGG 0.343803 2:-51737057 None:intergenic
AAAGGAAGCAGAGGCGGAAC+TGG 0.344863 2:-51736699 None:intergenic
TCAAAATGAGGATTAGATTC+AGG 0.353354 2:-51737193 None:intergenic
TGAAATACTAAAACCTGTAT+TGG 0.355353 2:+51737162 MsG0280009425.01.T01:CDS
TGGTGATTATTCACTGCATA+AGG 0.359911 2:+51735205 MsG0280009425.01.T01:CDS
TTAGGGTTTGTTGAGAGAAA+TGG 0.360063 2:+51736384 MsG0280009425.01.T01:intron
ATTGGATGATAAGAGAATTA+GGG 0.360540 2:+51735097 MsG0280009425.01.T01:CDS
GAACCTATTGAAGCTCGATT+TGG 0.361063 2:-51738220 None:intergenic
ATCAACTCTATAGCGGGCCT+TGG 0.361133 2:-51737995 None:intergenic
AAATTACTCATCTTGACCTT+TGG 0.381357 2:-51737751 None:intergenic
TAGTGTGGCTGTGACATCTT+TGG 0.384870 2:+51735241 MsG0280009425.01.T01:CDS
AAGTCTCATGAGGAGGATTC+TGG 0.387509 2:+51736764 MsG0280009425.01.T01:CDS
GGTTGAGGTGGTGGAGGGGC+GGG 0.389700 2:-51737619 None:intergenic
TGTTTGTGGAGGAAGGAAAA+TGG 0.392737 2:+51737272 MsG0280009425.01.T01:CDS
AGGTTGAGGTGGTGGAGGGG+CGG 0.392897 2:-51737620 None:intergenic
TTTGTAATTTCTATTAAGTT+CGG 0.393587 2:-51737409 None:intergenic
TCTACAACTGCTGGAAAACT+TGG 0.400509 2:+51736800 MsG0280009425.01.T01:CDS
AGCAAGTCAATTAAGAGGTA+TGG 0.404160 2:+51738096 MsG0280009425.01.T01:CDS
TTCTTCTCACGCAGCTCAGC+AGG 0.405655 2:-51737895 None:intergenic
TTGCCAAATCGAGCTTCAAT+AGG 0.406342 2:+51738217 MsG0280009425.01.T01:CDS
TGCAGCTGCTGAGCGTGAGC+AGG 0.412035 2:+51737837 MsG0280009425.01.T01:CDS
TTCATCTATTTCACGTCCCT+GGG 0.414957 2:-51737056 None:intergenic
TGATAATGAGGCTAGGGTTA+AGG 0.417089 2:+51735163 MsG0280009425.01.T01:CDS
ATTAGTGTTGTTGTGGTTGA+AGG 0.421250 2:+51738069 MsG0280009425.01.T01:CDS
GAATCTACAGCTATGTTTCC+TGG 0.422589 2:+51736965 MsG0280009425.01.T01:CDS
TTCCTCTTATGCGAGGAGTA+TGG 0.424460 2:-51735047 None:intergenic
CACCATACTCCTCGCATAAG+AGG 0.428130 2:+51735045 MsG0280009425.01.T01:CDS
ACATAGCTATGATCGGGAAT+TGG 0.430206 2:+51735079 MsG0280009425.01.T01:CDS
GGCTCAGCAGGCGGTTCAAT+AGG 0.433119 2:-51737598 None:intergenic
CAAAGCTCCTGCGGCCTAAG+AGG 0.436122 2:+51737239 MsG0280009425.01.T01:CDS
TAACGTCTGGTGTAGCAATC+TGG 0.436715 2:-51736988 None:intergenic
AAGGAAGCAGAGGCGGAACT+GGG 0.437370 2:-51736698 None:intergenic
ACCTCCCAAGCTAACTAAAC+AGG 0.443090 2:+51737639 MsG0280009425.01.T01:CDS
TTATGCGTAGACGTATTGAT+TGG 0.448965 2:+51738124 MsG0280009425.01.T01:CDS
AACAGAAAATTCATCCTCTT+AGG 0.449563 2:-51737253 None:intergenic
CGCCTTCTTAGCCTTTGCTA+AGG 0.450874 2:-51736843 None:intergenic
GGAGGGGCGGGCTCAGCAGG+CGG 0.453459 2:-51737607 None:intergenic
AGTAATTTACATAAGGTACT+AGG 0.456676 2:+51737766 MsG0280009425.01.T01:CDS
CCCCTCCTCCTTCCTTTCAG+TGG 0.457076 2:+51735264 MsG0280009425.01.T01:CDS
GTGAAGTGTTTGTGGATGCT+GGG 0.458044 2:+51738277 MsG0280009425.01.T01:CDS
TAGGGTTTGTGAAGCAAAGA+AGG 0.462240 2:+51735115 MsG0280009425.01.T01:CDS
AGGAAGCAGAGGCGGAACTG+GGG 0.462423 2:-51736697 None:intergenic
AGATGCCAATAAATGTGTTC+TGG 0.462586 2:+51738179 MsG0280009425.01.T01:CDS
TGTTCTTCGTCTTGACGCCC+AGG 0.463631 2:+51737039 MsG0280009425.01.T01:CDS
GGGTCATCATCTACAACTGC+TGG 0.466544 2:+51736791 MsG0280009425.01.T01:CDS
TGGGAGGTTGAGGTGGTGGA+GGG 0.468936 2:-51737624 None:intergenic
TCAGGATTGACATCCAATAC+AGG 0.470166 2:-51737175 None:intergenic
GCTCAAGAAAATCGTTTGAC+TGG 0.472903 2:+51738024 MsG0280009425.01.T01:CDS
GGGAGGTTGAGGTGGTGGAG+GGG 0.473436 2:-51737623 None:intergenic
TGCTGAGCTGCGTGAGAAGA+AGG 0.474449 2:+51737897 MsG0280009425.01.T01:CDS
ACCACTCAATATCTGGAATT+GGG 0.474879 2:-51737462 None:intergenic
CGAAGAACAGGAACCTTGGT+TGG 0.478730 2:-51737025 None:intergenic
TTTAATGTGCTAAGGTTGGT+TGG 0.479812 2:-51737106 None:intergenic
CATGAGGAGGATTCTGGAGA+TGG 0.480820 2:+51736770 MsG0280009425.01.T01:CDS
TGGGGATTATTATGATAATG+AGG 0.482713 2:+51735151 MsG0280009425.01.T01:CDS
TTAGTTAGCTTGGGAGGTTG+AGG 0.485289 2:-51737634 None:intergenic
GTGAGCAGGCTCACATAGAT+AGG 0.485650 2:+51737851 MsG0280009425.01.T01:CDS
GAGGAAGTTACTATTACTAA+TGG 0.487185 2:+51735185 MsG0280009425.01.T01:CDS
AATCGTGGCGGCTCCGATGA+TGG 0.489243 2:-51734956 None:intergenic
GGTGATTATTCACTGCATAA+GGG 0.491406 2:+51735206 MsG0280009425.01.T01:CDS
AGCTGCTCGTGAAGTGTTTG+TGG 0.491618 2:+51738269 MsG0280009425.01.T01:CDS
CCTCTGTATAGTTGACAGCT+TGG 0.492819 2:-51738317 None:intergenic
GTTAGCTTGGGAGGTTGAGG+TGG 0.493935 2:-51737631 None:intergenic
AGATCCCACCCGGCTCGAAA+AGG 0.494619 2:+51737804 MsG0280009425.01.T01:CDS
AGCTAAGGAGAAAGAGCGAC+AGG 0.494652 2:+51737693 MsG0280009425.01.T01:CDS
GCGACAGGAGATGATTAGAC+AGG 0.494709 2:+51737708 MsG0280009425.01.T01:CDS
TCATATAAAGGATGGGGTGG+CGG 0.494801 2:+51736656 MsG0280009425.01.T01:intron
CAAGATGAGTAATTTACATA+AGG 0.497213 2:+51737759 MsG0280009425.01.T01:CDS
ATGAAGATAGAGATGGAGAT+TGG 0.497268 2:+51736446 MsG0280009425.01.T01:CDS
TATAAAGGATGGGGTGGCGG+TGG 0.497450 2:+51736659 MsG0280009425.01.T01:intron
GGAAGCAGAGGCGGAACTGG+GGG 0.498568 2:-51736696 None:intergenic
GAAGCAGAGGCGGAACTGGG+GGG 0.502272 2:-51736695 None:intergenic
GGAACCTTGGTTGGTTTCTG+AGG 0.507895 2:-51737016 None:intergenic
TTCACAAGAAAGCACACAGT+TGG 0.508164 2:+51736931 MsG0280009425.01.T01:CDS
TGGGCGTCAAGACGAAGAAC+AGG 0.509477 2:-51737037 None:intergenic
CTCCTCCTTCCTTTCAGTGG+CGG 0.510744 2:+51735267 MsG0280009425.01.T01:CDS
CGAAGATAGCTTGGTAGGAA+AGG 0.510876 2:-51736717 None:intergenic
GGCGGCTCCGATGATGGTTA+CGG 0.511230 2:-51734950 None:intergenic
GCAAGTCAATTAAGAGGTAT+GGG 0.512247 2:+51738097 MsG0280009425.01.T01:CDS
TCAACTCTATAGCGGGCCTT+GGG 0.512863 2:-51737994 None:intergenic
TCCTGTTTAGTTAGCTTGGG+AGG 0.513523 2:-51737640 None:intergenic
TGGTGGCAGAGTTTGGTTTG+CGG 0.513966 2:+51736466 MsG0280009425.01.T01:CDS
CAGGTGTGTCCAATGTATTT+GGG 0.514012 2:-51737939 None:intergenic
GACCTTTAATGTGCTAAGGT+TGG 0.515442 2:-51737110 None:intergenic
CGCCACTGAAAGGAAGGAGG+AGG 0.517310 2:-51735266 None:intergenic
TTTACCCTGTAAAGTGAGAC+AGG 0.519082 2:-51737958 None:intergenic
TCACAAGAAAGCACACAGTT+GGG 0.520179 2:+51736932 MsG0280009425.01.T01:CDS
TGATGGTATTAGTGTTGTTG+TGG 0.521019 2:+51738062 MsG0280009425.01.T01:CDS
GTGGAAGCAAGTCAATTAAG+AGG 0.522404 2:+51738091 MsG0280009425.01.T01:CDS
ATTATTATGATAATGAGGCT+AGG 0.526801 2:+51735156 MsG0280009425.01.T01:CDS
TTCATCATCTATAGTACCGT+TGG 0.528603 2:-51737527 None:intergenic
AAGATAGAGATGGAGATTGG+TGG 0.528706 2:+51736449 MsG0280009425.01.T01:CDS
TAGAGAACATAGCTATGATC+GGG 0.530400 2:+51735073 MsG0280009425.01.T01:CDS
ACTTCGATTTAGATCGATGA+TGG 0.530842 2:-51734992 None:intergenic
TGATTGGACTGATGTTTCAA+AGG 0.530923 2:+51738140 MsG0280009425.01.T01:CDS
CACACCTGTCTCACTTTACA+GGG 0.531003 2:+51737954 MsG0280009425.01.T01:CDS
ATTTAGATCGATGATGGCAG+TGG 0.531501 2:-51734986 None:intergenic
TTCTGAGGGATAGTAACGTC+TGG 0.532884 2:-51737001 None:intergenic
TGCCTTAGCAAAGGCTAAGA+AGG 0.534221 2:+51736841 MsG0280009425.01.T01:CDS
GACCCAAAGGCGTATAGCTA+AGG 0.535984 2:+51737678 MsG0280009425.01.T01:CDS
AGTGTTGTTGTGGTTGAAGG+TGG 0.536548 2:+51738072 MsG0280009425.01.T01:CDS
TAATGAGGCTAGGGTTAAGG+AGG 0.542515 2:+51735166 MsG0280009425.01.T01:CDS
AGCTCAAGCAAAAGAGCTGA+AGG 0.543647 2:+51737339 MsG0280009425.01.T01:CDS
TGGCTCCGCCACTGAAAGGA+AGG 0.545516 2:-51735272 None:intergenic
GAACCTTGGTTGGTTTCTGA+GGG 0.546067 2:-51737015 None:intergenic
AGCTGCGTGAGAAGAAGGAA+AGG 0.547194 2:+51737902 MsG0280009425.01.T01:CDS
ATAGAGAACATAGCTATGAT+CGG 0.548241 2:+51735072 MsG0280009425.01.T01:CDS
AGATATTGAGTGGTGGGACG+TGG 0.548713 2:+51737471 MsG0280009425.01.T01:CDS
TTATTATGATAATGAGGCTA+GGG 0.548857 2:+51735157 MsG0280009425.01.T01:CDS
CCCATTCTCTCATCAAAATG+AGG 0.549338 2:-51737205 None:intergenic
CAAACAAGCACAGCTAGCAA+AGG 0.555686 2:+51737363 MsG0280009425.01.T01:CDS
TCGATGATGGCAGTGGTCAT+CGG 0.557491 2:-51734979 None:intergenic
GTAATCGAAGATAGCTTGGT+AGG 0.559296 2:-51736722 None:intergenic
GGCAGTGGTCATCGGAATCG+TGG 0.561202 2:-51734971 None:intergenic
TGTTGACCTTTAATGTGCTA+AGG 0.561959 2:-51737114 None:intergenic
GTTCTTCGTCTTGACGCCCA+GGG 0.562372 2:+51737040 MsG0280009425.01.T01:CDS
ATTAACATCAACTCTATAGC+GGG 0.562728 2:-51738001 None:intergenic
AATTCATCCTCTTAGGCCGC+AGG 0.563858 2:-51737246 None:intergenic
GCCACTGAAAGGAAGGAGGA+GGG 0.564339 2:-51735265 None:intergenic
TCTGGTGTAGCAATCTGGCC+AGG 0.566957 2:-51736983 None:intergenic
AGTAGTAATCGAAGATAGCT+TGG 0.567160 2:-51736726 None:intergenic
AACGCGACCGTAACCATCAT+CGG 0.568326 2:+51734943 MsG0280009425.01.T01:CDS
GGGATCACCTGCTGCTAGTG+TGG 0.569990 2:+51735226 MsG0280009425.01.T01:CDS
GTCACAGCCACACTAGCAGC+AGG 0.579750 2:-51735233 None:intergenic
GTATTATGACCCAAATACAT+TGG 0.579784 2:+51737930 MsG0280009425.01.T01:CDS
CCACTGAAAGGAAGGAGGAG+GGG 0.581239 2:-51735264 None:intergenic
GTAATTTACATAAGGTACTA+GGG 0.581923 2:+51737767 MsG0280009425.01.T01:CDS
ATCGAAGTGCGATGAAGAGA+GGG 0.582378 2:+51735007 MsG0280009425.01.T01:CDS
ATGAGGAGGATTCTGGAGAT+GGG 0.584035 2:+51736771 MsG0280009425.01.T01:CDS
TGTCTGGCTCCGCCACTGAA+AGG 0.584477 2:-51735276 None:intergenic
CTCTTATGCGAGGAGTATGG+TGG 0.584930 2:-51735044 None:intergenic
CTAAGGCATCACTACTAGAG+AGG 0.588190 2:-51736826 None:intergenic
TGAAAATAACAAGTCTCATG+AGG 0.598446 2:+51736754 MsG0280009425.01.T01:CDS
AATTCCAGATATTGAGTGGT+GGG 0.600042 2:+51737465 MsG0280009425.01.T01:CDS
AATCGAAGTGCGATGAAGAG+AGG 0.601185 2:+51735006 MsG0280009425.01.T01:CDS
TGAAGAGAGGGAAGATTCAG+TGG 0.601353 2:+51735019 MsG0280009425.01.T01:CDS
TCTATCTTTCCTCTTATGCG+AGG 0.606208 2:-51735054 None:intergenic
CGACAGGAGATGATTAGACA+GGG 0.610803 2:+51737709 MsG0280009425.01.T01:CDS
AAGACGAAGAACAGGAACCT+TGG 0.611050 2:-51737029 None:intergenic
CTTGGTAGGAAAGGAAGCAG+AGG 0.615985 2:-51736708 None:intergenic
AAATGACCTCTCTCATCCCA+AGG 0.616566 2:+51737978 MsG0280009425.01.T01:CDS
GGATGTGCGGTGATTTGTGA+TGG 0.616908 2:+51738045 MsG0280009425.01.T01:CDS
ACAGCTTGGTCCCAATAATG+AGG 0.617442 2:-51738303 None:intergenic
TAGTAGTGATGCCTTAGCAA+AGG 0.620911 2:+51736832 MsG0280009425.01.T01:CDS
AGCACAGCTAGCAAAGGCAA+AGG 0.626359 2:+51737369 MsG0280009425.01.T01:CDS
CAATTCCAGATATTGAGTGG+TGG 0.626915 2:+51737464 MsG0280009425.01.T01:CDS
TCTCACTTCATAGTTCAGAT+CGG 0.627596 2:+51736421 MsG0280009425.01.T01:CDS
GCAGGCGGTTCAATAGGCCG+AGG 0.628346 2:-51737592 None:intergenic
ATCGGCGATGAAGATAGAGA+TGG 0.629687 2:+51736439 MsG0280009425.01.T01:CDS
CTCCGCCACTGAAAGGAAGG+AGG 0.630647 2:-51735269 None:intergenic
GGTAGGAAAGGAAGCAGAGG+CGG 0.633343 2:-51736705 None:intergenic
CCAATAAATGTGTTCTGGTG+TGG 0.635559 2:+51738184 MsG0280009425.01.T01:CDS
GAATTTGAGTTATTCAACTG+AGG 0.639060 2:-51736911 None:intergenic
GAAGGAACGTAGGAGATTTG+GGG 0.644948 2:+51735133 MsG0280009425.01.T01:CDS
ACCCAATTCCAGATATTGAG+TGG 0.645164 2:+51737461 MsG0280009425.01.T01:CDS
AGCGGGCCTTGGGATGAGAG+AGG 0.647591 2:-51737984 None:intergenic
AAATAACAAGTCTCATGAGG+AGG 0.649017 2:+51736757 MsG0280009425.01.T01:CDS
CTTAGCAAAGGCTAAGAAGG+CGG 0.652364 2:+51736844 MsG0280009425.01.T01:CDS
TGGCAGAGTTTGGTTTGCGG+TGG 0.653936 2:+51736469 MsG0280009425.01.T01:CDS
GGACGTGAAATAGATGAACA+TGG 0.655823 2:+51737061 MsG0280009425.01.T01:CDS
AAATGTGTTCTGGTGTGGCA+AGG 0.657323 2:+51738189 MsG0280009425.01.T01:CDS
TGAAGTGTTTGTGGATGCTG+GGG 0.659104 2:+51738278 MsG0280009425.01.T01:CDS
CATAGAACCTCCAAAACCAA+AGG 0.659248 2:+51737735 MsG0280009425.01.T01:CDS
AATTATGGTGACATTGCCAA+CGG 0.664930 2:+51737511 MsG0280009425.01.T01:CDS
ATTTCATATAAAGGATGGGG+TGG 0.665736 2:+51736653 MsG0280009425.01.T01:intron
CATTAACATCAACTCTATAG+CGG 0.679052 2:-51738002 None:intergenic
AGTGGTCATCGGAATCGTGG+CGG 0.685299 2:-51734968 None:intergenic
TCGACAAAACAAAGCTCCTG+CGG 0.696622 2:+51737230 MsG0280009425.01.T01:CDS
GTGAAGCAAAGAAGGAACGT+AGG 0.699586 2:+51735123 MsG0280009425.01.T01:CDS
AAGCAACTCAAGATCCCACC+CGG 0.703568 2:+51737794 MsG0280009425.01.T01:CDS
AAATCGTTTGACTGGATGTG+CGG 0.704841 2:+51738032 MsG0280009425.01.T01:CDS
CCAAGCTGTCAACTATACAG+AGG 0.726035 2:+51738317 MsG0280009425.01.T01:CDS
TATCCCTCAGAAACCAACCA+AGG 0.735568 2:+51737012 MsG0280009425.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTTTAGTTTATTTTGA+TGG - Chr2:51735329-51735348 None:intergenic 10.0%
!! ATAAAATTGAAGAGTAAATT+TGG + Chr2:51737313-51737332 MsG0280009425.01.T01:CDS 15.0%
!! ATAATGGTAATTTCATATAA+AGG + Chr2:51736644-51736663 MsG0280009425.01.T01:intron 15.0%
!! TTTGTAATTTCTATTAAGTT+CGG - Chr2:51737412-51737431 None:intergenic 15.0%
!!! ATAAAATCCAAATTTTTTGA+AGG - Chr2:51735876-51735895 None:intergenic 15.0%
!!! ATTGTTTATGTTTTTTTTGA+AGG - Chr2:51736255-51736274 None:intergenic 15.0%
!!! TAAAATCCAAATTTTTTGAA+GGG - Chr2:51735875-51735894 None:intergenic 15.0%
!!! TAGTAAGATATTTTACATTT+AGG - Chr2:51736601-51736620 None:intergenic 15.0%
!!! TTGTTTATGTTTTTTTTGAA+GGG - Chr2:51736254-51736273 None:intergenic 15.0%
!!! TTTTAACATCCAAATAAAAA+GGG + Chr2:51736079-51736098 MsG0280009425.01.T01:intron 15.0%
!!! TTTTTAACATCCAAATAAAA+AGG + Chr2:51736078-51736097 MsG0280009425.01.T01:intron 15.0%
!! AAACAATACATATAATCAAC+AGG + Chr2:51736268-51736287 MsG0280009425.01.T01:intron 20.0%
!! GTTATATTCATTCAGATTTA+GGG - Chr2:51735968-51735987 None:intergenic 20.0%
!!! AATTTTGAATGATCGATTTT+TGG - Chr2:51735391-51735410 None:intergenic 20.0%
!!! ACAATTTTCAACAACAATTA+GGG + Chr2:51736367-51736386 MsG0280009425.01.T01:intron 20.0%
!!! ATTTATATAGAAGGGTATAA+TGG + Chr2:51736628-51736647 MsG0280009425.01.T01:intron 20.0%
!!! GGTTTTGGTTATTTTTATAA+GGG - Chr2:51736031-51736050 None:intergenic 20.0%
!!! TACAATTTTCAACAACAATT+AGG + Chr2:51736366-51736385 MsG0280009425.01.T01:intron 20.0%
!!! TTTGATATTGTTTTTGAGAT+GGG - Chr2:51736052-51736071 None:intergenic 20.0%
!!! TTTTCTAATTTTGATTGATG+AGG + Chr2:51735490-51735509 MsG0280009425.01.T01:intron 20.0%
!!! TTTTGATATTGTTTTTGAGA+TGG - Chr2:51736053-51736072 None:intergenic 20.0%
! AATACACCCTTCAAAAAATT+TGG + Chr2:51735866-51735885 MsG0280009425.01.T01:intron 25.0%
! AATTGGATGATAAGAGAATT+AGG + Chr2:51735096-51735115 MsG0280009425.01.T01:CDS 25.0%
! ATTGGATGATAAGAGAATTA+GGG + Chr2:51735097-51735116 MsG0280009425.01.T01:CDS 25.0%
! CAAGATGAGTAATTTACATA+AGG + Chr2:51737759-51737778 MsG0280009425.01.T01:CDS 25.0%
! GGTAATTTCATATAAAGGAT+GGG + Chr2:51736649-51736668 MsG0280009425.01.T01:intron 25.0%
! GGTTATATTCATTCAGATTT+AGG - Chr2:51735969-51735988 None:intergenic 25.0%
! GTAATTTCATATAAAGGATG+GGG + Chr2:51736650-51736669 MsG0280009425.01.T01:intron 25.0%
! TAAATGACCATATACTAACA+CGG + Chr2:51735816-51735835 MsG0280009425.01.T01:intron 25.0%
! TCAACTCTATTAACCTTTAA+AGG + Chr2:51735625-51735644 MsG0280009425.01.T01:intron 25.0%
! TGAAATACTAAAACCTGTAT+TGG + Chr2:51737162-51737181 MsG0280009425.01.T01:CDS 25.0%
! TGGTAATTTCATATAAAGGA+TGG + Chr2:51736648-51736667 MsG0280009425.01.T01:intron 25.0%
! TGTAATGAAAGAAAAACTGA+AGG + Chr2:51737438-51737457 MsG0280009425.01.T01:CDS 25.0%
!! ACATTGAGAATTCTTTAGAA+AGG - Chr2:51735597-51735616 None:intergenic 25.0%
!! AGTAATTTACATAAGGTACT+AGG + Chr2:51737766-51737785 MsG0280009425.01.T01:CDS 25.0%
!! ATTATTATGATAATGAGGCT+AGG + Chr2:51735156-51735175 MsG0280009425.01.T01:CDS 25.0%
!! CATTGAGAATTCTTTAGAAA+GGG - Chr2:51735596-51735615 None:intergenic 25.0%
!! GACTCATTTTCTTCAATTAT+TGG + Chr2:51735652-51735671 MsG0280009425.01.T01:intron 25.0%
!! GGAAAAATTCAACTTTTATG+TGG + Chr2:51737564-51737583 MsG0280009425.01.T01:CDS 25.0%
!! GTAATTTACATAAGGTACTA+GGG + Chr2:51737767-51737786 MsG0280009425.01.T01:CDS 25.0%
!! TAAATTTTCTCTTTCATCAG+TGG - Chr2:51736576-51736595 None:intergenic 25.0%
!! TAAGATGAAGTATCAAAGAA+TGG - Chr2:51735763-51735782 None:intergenic 25.0%
!! TTATTATGATAATGAGGCTA+GGG + Chr2:51735157-51735176 MsG0280009425.01.T01:CDS 25.0%
!!! GGGTTTTGGTTATTTTTATA+AGG - Chr2:51736032-51736051 None:intergenic 25.0%
!!! TTTGGTTATTTTTATAAGGG+TGG - Chr2:51736028-51736047 None:intergenic 25.0%
AAAGAATTCTCAATGTCATC+TGG + Chr2:51735601-51735620 MsG0280009425.01.T01:intron 30.0%
AAATTACTCATCTTGACCTT+TGG - Chr2:51737754-51737773 None:intergenic 30.0%
AACAGAAAATTCATCCTCTT+AGG - Chr2:51737256-51737275 None:intergenic 30.0%
ATAGAGAACATAGCTATGAT+CGG + Chr2:51735072-51735091 MsG0280009425.01.T01:CDS 30.0%
ATTAACATCAACTCTATAGC+GGG - Chr2:51738004-51738023 None:intergenic 30.0%
ATTCTGCTTTCAATCTTCTT+CGG - Chr2:51736212-51736231 None:intergenic 30.0%
CATTAACATCAACTCTATAG+CGG - Chr2:51738005-51738024 None:intergenic 30.0%
CTTCATCTCTTGAATATCAA+CGG + Chr2:51735716-51735735 MsG0280009425.01.T01:intron 30.0%
GAGGAAGTTACTATTACTAA+TGG + Chr2:51735185-51735204 MsG0280009425.01.T01:CDS 30.0%
GTATTATGACCCAAATACAT+TGG + Chr2:51737930-51737949 MsG0280009425.01.T01:CDS 30.0%
TCAAAATGAGGATTAGATTC+AGG - Chr2:51737196-51737215 None:intergenic 30.0%
TGAAAATAACAAGTCTCATG+AGG + Chr2:51736754-51736773 MsG0280009425.01.T01:CDS 30.0%
TGATGAATGCAAACTGAAAA+TGG + Chr2:51737543-51737562 MsG0280009425.01.T01:CDS 30.0%
! AATTCTTTAGAAAGGGATAC+AGG - Chr2:51735589-51735608 None:intergenic 30.0%
! GAATTTGAGTTATTCAACTG+AGG - Chr2:51736914-51736933 None:intergenic 30.0%
! GATTTTACCGTGTTAGTATA+TGG - Chr2:51735826-51735845 None:intergenic 30.0%
! TGGGGATTATTATGATAATG+AGG + Chr2:51735151-51735170 MsG0280009425.01.T01:CDS 30.0%
!! GAATGGATTCTATTTTCAAG+AGG - Chr2:51735746-51735765 None:intergenic 30.0%
!! GGAGTATTACCCTTTTTATT+TGG - Chr2:51736091-51736110 None:intergenic 30.0%
!! TCTTTCGGTATGTTTTTATG+TGG - Chr2:51736112-51736131 None:intergenic 30.0%
!! TTGTTTTGTAGCATTTGAAG+CGG - Chr2:51735787-51735806 None:intergenic 30.0%
!!! ATTGTTTTTGAGATGGGTTT+TGG - Chr2:51736046-51736065 None:intergenic 30.0%
!!! CACGATTTGATTTTTTGGTT+GGG + Chr2:51736516-51736535 MsG0280009425.01.T01:intron 30.0%
!!! TCACGATTTGATTTTTTGGT+TGG + Chr2:51736515-51736534 MsG0280009425.01.T01:intron 30.0%
!!! TGGATCACGATTTGATTTTT+TGG + Chr2:51736511-51736530 MsG0280009425.01.T01:intron 30.0%
!!! TGTTTTTTTTGAAGGGTGTA+TGG - Chr2:51736247-51736266 None:intergenic 30.0%
AAATAACAAGTCTCATGAGG+AGG + Chr2:51736757-51736776 MsG0280009425.01.T01:CDS 35.0%
AAATGAGTCTCGTCCTTTAA+AGG - Chr2:51735641-51735660 None:intergenic 35.0%
AACAGGAGCAGAAAAAACTA+AGG + Chr2:51737656-51737675 MsG0280009425.01.T01:CDS 35.0%
AACCAACCTTAGCACATTAA+AGG + Chr2:51737108-51737127 MsG0280009425.01.T01:CDS 35.0%
AATTATGGTGACATTGCCAA+CGG + Chr2:51737511-51737530 MsG0280009425.01.T01:CDS 35.0%
AATTCCAGATATTGAGTGGT+GGG + Chr2:51737465-51737484 MsG0280009425.01.T01:CDS 35.0%
ACTTCGATTTAGATCGATGA+TGG - Chr2:51734995-51735014 None:intergenic 35.0%
AGAAAAAACTAAGGACCCAA+AGG + Chr2:51737665-51737684 MsG0280009425.01.T01:CDS 35.0%
AGATGCCAATAAATGTGTTC+TGG + Chr2:51738179-51738198 MsG0280009425.01.T01:CDS 35.0%
AGCAAGTCAATTAAGAGGTA+TGG + Chr2:51738096-51738115 MsG0280009425.01.T01:CDS 35.0%
AGTAGTAATCGAAGATAGCT+TGG - Chr2:51736729-51736748 None:intergenic 35.0%
ATGAAGATAGAGATGGAGAT+TGG + Chr2:51736446-51736465 MsG0280009425.01.T01:CDS 35.0%
ATTTCATATAAAGGATGGGG+TGG + Chr2:51736653-51736672 MsG0280009425.01.T01:intron 35.0%
CAGGAAAACGTATTCCAATT+TGG - Chr2:51735570-51735589 None:intergenic 35.0%
GCAATATCCACCAAATCAAA+AGG - Chr2:51735548-51735567 None:intergenic 35.0%
GGTGATTATTCACTGCATAA+GGG + Chr2:51735206-51735225 MsG0280009425.01.T01:CDS 35.0%
TAGAGAACATAGCTATGATC+GGG + Chr2:51735073-51735092 MsG0280009425.01.T01:CDS 35.0%
TCTCACTTCATAGTTCAGAT+CGG + Chr2:51736421-51736440 MsG0280009425.01.T01:CDS 35.0%
TGATTGGACTGATGTTTCAA+AGG + Chr2:51738140-51738159 MsG0280009425.01.T01:CDS 35.0%
TGGTGATTATTCACTGCATA+AGG + Chr2:51735205-51735224 MsG0280009425.01.T01:CDS 35.0%
TGTTGACCTTTAATGTGCTA+AGG - Chr2:51737117-51737136 None:intergenic 35.0%
TTAGAAAACTATCCCATGTC+CGG - Chr2:51735478-51735497 None:intergenic 35.0%
TTCATCATCTATAGTACCGT+TGG - Chr2:51737530-51737549 None:intergenic 35.0%
TTTGCTTCAAGGCTTTCTTT+CGG - Chr2:51736127-51736146 None:intergenic 35.0%
! AATTTTCTGTTTGTGGAGGA+AGG + Chr2:51737265-51737284 MsG0280009425.01.T01:CDS 35.0%
! ACCACTCAATATCTGGAATT+GGG - Chr2:51737465-51737484 None:intergenic 35.0%
! ACGAAGAGCGTATCTAAAAT+GGG - Chr2:51735518-51735537 None:intergenic 35.0%
! ACTTTTATGTGGAACATCCT+CGG + Chr2:51737575-51737594 MsG0280009425.01.T01:CDS 35.0%
! ATTAGTGTTGTTGTGGTTGA+AGG + Chr2:51738069-51738088 MsG0280009425.01.T01:CDS 35.0%
! CTTCTGCATTCTGGAAATTA+TGG + Chr2:51737496-51737515 MsG0280009425.01.T01:CDS 35.0%
! GAGGATGAATTTTCTGTTTG+TGG + Chr2:51737258-51737277 MsG0280009425.01.T01:CDS 35.0%
! GATGAATTTTCTGTTTGTGG+AGG + Chr2:51737261-51737280 MsG0280009425.01.T01:CDS 35.0%
! GCAAGTCAATTAAGAGGTAT+GGG + Chr2:51738097-51738116 MsG0280009425.01.T01:CDS 35.0%
! TACGAAGAGCGTATCTAAAA+TGG - Chr2:51735519-51735538 None:intergenic 35.0%
! TCAACTGAGGAATTTTCTTC+AGG - Chr2:51736901-51736920 None:intergenic 35.0%
! TGATGGTATTAGTGTTGTTG+TGG + Chr2:51738062-51738081 MsG0280009425.01.T01:CDS 35.0%
! TTATGCGTAGACGTATTGAT+TGG + Chr2:51738124-51738143 MsG0280009425.01.T01:CDS 35.0%
! TTTAATGTGCTAAGGTTGGT+TGG - Chr2:51737109-51737128 None:intergenic 35.0%
! TTTGGTGGATATTGCCAAAT+TGG + Chr2:51735553-51735572 MsG0280009425.01.T01:intron 35.0%
!! ATAAGGGTGGTGATGATTTT+GGG - Chr2:51736015-51736034 None:intergenic 35.0%
!! CCTCATTTTGATGAGAGAAT+GGG + Chr2:51737205-51737224 MsG0280009425.01.T01:CDS 35.0%
!! GGATTCTATTTTCAAGAGGA+AGG - Chr2:51735742-51735761 None:intergenic 35.0%
!! GGTGATGATTTTGGGTAATT+GGG - Chr2:51736007-51736026 None:intergenic 35.0%
!! TATAAGGGTGGTGATGATTT+TGG - Chr2:51736016-51736035 None:intergenic 35.0%
!! TCCTCATTTTGATGAGAGAA+TGG + Chr2:51737204-51737223 MsG0280009425.01.T01:CDS 35.0%
!! TGATTTTGGGTAATTGGGTA+TGG - Chr2:51736002-51736021 None:intergenic 35.0%
!! TGGTGATGATTTTGGGTAAT+TGG - Chr2:51736008-51736027 None:intergenic 35.0%
!! TTAGGGTTTGTTGAGAGAAA+TGG + Chr2:51736384-51736403 MsG0280009425.01.T01:intron 35.0%
!!! AGTTTATTTTGATGGCGAGA+TGG - Chr2:51735321-51735340 None:intergenic 35.0%
AAATCGTTTGACTGGATGTG+CGG + Chr2:51738032-51738051 MsG0280009425.01.T01:CDS 40.0%
AAGAAGGAACGTAGGAGATT+TGG + Chr2:51735131-51735150 MsG0280009425.01.T01:CDS 40.0%
AAGATAGAGATGGAGATTGG+TGG + Chr2:51736449-51736468 MsG0280009425.01.T01:CDS 40.0%
ACAGGTGTGTCCAATGTATT+TGG - Chr2:51737943-51737962 None:intergenic 40.0%
ACATAGCTATGATCGGGAAT+TGG + Chr2:51735079-51735098 MsG0280009425.01.T01:CDS 40.0%
ACCCAATTCCAGATATTGAG+TGG + Chr2:51737461-51737480 MsG0280009425.01.T01:CDS 40.0%
AGAAAGCCTTGAAGCAAAAG+TGG + Chr2:51736129-51736148 MsG0280009425.01.T01:intron 40.0%
AGAAGGAACGTAGGAGATTT+GGG + Chr2:51735132-51735151 MsG0280009425.01.T01:CDS 40.0%
CAATTCCAGATATTGAGTGG+TGG + Chr2:51737464-51737483 MsG0280009425.01.T01:CDS 40.0%
CAGGTGTGTCCAATGTATTT+GGG - Chr2:51737942-51737961 None:intergenic 40.0%
CATAGAACCTCCAAAACCAA+AGG + Chr2:51737735-51737754 MsG0280009425.01.T01:CDS 40.0%
CCAATAAATGTGTTCTGGTG+TGG + Chr2:51738184-51738203 MsG0280009425.01.T01:CDS 40.0%
CCACACCAGAACACATTTAT+TGG - Chr2:51738187-51738206 None:intergenic 40.0%
CCCATTCTCTCATCAAAATG+AGG - Chr2:51737208-51737227 None:intergenic 40.0%
GAACCTATTGAAGCTCGATT+TGG - Chr2:51738223-51738242 None:intergenic 40.0%
GAATCTACAGCTATGTTTCC+TGG + Chr2:51736965-51736984 MsG0280009425.01.T01:CDS 40.0%
GACCTTTAATGTGCTAAGGT+TGG - Chr2:51737113-51737132 None:intergenic 40.0%
GAGCCAGACAAAAAAGTTTG+GGG + Chr2:51735289-51735308 MsG0280009425.01.T01:CDS 40.0%
GCTCAAGAAAATCGTTTGAC+TGG + Chr2:51738024-51738043 MsG0280009425.01.T01:CDS 40.0%
GGACGTGAAATAGATGAACA+TGG + Chr2:51737061-51737080 MsG0280009425.01.T01:CDS 40.0%
GGAGCCAGACAAAAAAGTTT+GGG + Chr2:51735288-51735307 MsG0280009425.01.T01:CDS 40.0%
GTAATCGAAGATAGCTTGGT+AGG - Chr2:51736725-51736744 None:intergenic 40.0%
GTGGAAGCAAGTCAATTAAG+AGG + Chr2:51738091-51738110 MsG0280009425.01.T01:CDS 40.0%
TAGGGTTTGTGAAGCAAAGA+AGG + Chr2:51735115-51735134 MsG0280009425.01.T01:CDS 40.0%
TAGTAGTGATGCCTTAGCAA+AGG + Chr2:51736832-51736851 MsG0280009425.01.T01:CDS 40.0%
TCAGGATTGACATCCAATAC+AGG - Chr2:51737178-51737197 None:intergenic 40.0%
TCTACAACTGCTGGAAAACT+TGG + Chr2:51736800-51736819 MsG0280009425.01.T01:CDS 40.0%
TCTATCTTTCCTCTTATGCG+AGG - Chr2:51735057-51735076 None:intergenic 40.0%
TGTTTGTGGAGGAAGGAAAA+TGG + Chr2:51737272-51737291 MsG0280009425.01.T01:CDS 40.0%
TTCATCTATTTCACGTCCCT+GGG - Chr2:51737059-51737078 None:intergenic 40.0%
TTGCCAAATCGAGCTTCAAT+AGG + Chr2:51738217-51738236 MsG0280009425.01.T01:CDS 40.0%
TTTACCCTGTAAAGTGAGAC+AGG - Chr2:51737961-51737980 None:intergenic 40.0%
! ATTTAGATCGATGATGGCAG+TGG - Chr2:51734989-51735008 None:intergenic 40.0%
! CACCACTCAATATCTGGAAT+TGG - Chr2:51737466-51737485 None:intergenic 40.0%
! CGAAGAGCGTATCTAAAATG+GGG - Chr2:51735517-51735536 None:intergenic 40.0%
! TCACAAGAAAGCACACAGTT+GGG + Chr2:51736932-51736951 MsG0280009425.01.T01:CDS 40.0%
! TGATAATGAGGCTAGGGTTA+AGG + Chr2:51735163-51735182 MsG0280009425.01.T01:CDS 40.0%
! TGCTCCTGTTTAGTTAGCTT+GGG - Chr2:51737646-51737665 None:intergenic 40.0%
! TTCACAAGAAAGCACACAGT+TGG + Chr2:51736931-51736950 MsG0280009425.01.T01:CDS 40.0%
!! CGTATAGCGTCCTTTTGATT+TGG + Chr2:51735535-51735554 MsG0280009425.01.T01:intron 40.0%
!! CTCATCTTGACCTTTGGTTT+TGG - Chr2:51737748-51737767 None:intergenic 40.0%
!!! ATAGCGTCCTTTTGATTTGG+TGG + Chr2:51735538-51735557 MsG0280009425.01.T01:intron 40.0%
!!! ATCTTGACCTTTGGTTTTGG+AGG - Chr2:51737745-51737764 None:intergenic 40.0%
!!! TTATTTTGATGGCGAGATGG+CGG - Chr2:51735318-51735337 None:intergenic 40.0%
AAAGGCGGTTTCAACACACT+TGG - Chr2:51735441-51735460 None:intergenic 45.0%
AAATGACCTCTCTCATCCCA+AGG + Chr2:51737978-51737997 MsG0280009425.01.T01:CDS 45.0%
AAATGTGTTCTGGTGTGGCA+AGG + Chr2:51738189-51738208 MsG0280009425.01.T01:CDS 45.0%
AACTATCCCATGTCCGGTAT+CGG - Chr2:51735472-51735491 None:intergenic 45.0%
AAGACGAAGAACAGGAACCT+TGG - Chr2:51737032-51737051 None:intergenic 45.0%
AAGTCTCATGAGGAGGATTC+TGG + Chr2:51736764-51736783 MsG0280009425.01.T01:CDS 45.0%
AATCGAAGTGCGATGAAGAG+AGG + Chr2:51735006-51735025 MsG0280009425.01.T01:CDS 45.0%
AATTGGGTATGGCTGTGATG+TGG - Chr2:51735991-51736010 None:intergenic 45.0%
ACACACCTGTCTCACTTTAC+AGG + Chr2:51737953-51737972 MsG0280009425.01.T01:CDS 45.0%
ACAGCTTGGTCCCAATAATG+AGG - Chr2:51738306-51738325 None:intergenic 45.0%
ACCTCCCAAGCTAACTAAAC+AGG + Chr2:51737639-51737658 MsG0280009425.01.T01:CDS 45.0%
AGCTCAAGCAAAAGAGCTGA+AGG + Chr2:51737339-51737358 MsG0280009425.01.T01:CDS 45.0%
ATCGAAGTGCGATGAAGAGA+GGG + Chr2:51735007-51735026 MsG0280009425.01.T01:CDS 45.0%
ATCGGCGATGAAGATAGAGA+TGG + Chr2:51736439-51736458 MsG0280009425.01.T01:CDS 45.0%
ATGCTGGGGTTCCTCATTAT+TGG + Chr2:51738292-51738311 MsG0280009425.01.T01:CDS 45.0%
ATTGGGTATGGCTGTGATGT+GGG - Chr2:51735990-51736009 None:intergenic 45.0%
CAAACAAGCACAGCTAGCAA+AGG + Chr2:51737363-51737382 MsG0280009425.01.T01:CDS 45.0%
CACACCTGTCTCACTTTACA+GGG + Chr2:51737954-51737973 MsG0280009425.01.T01:CDS 45.0%
CCAAGCTGTCAACTATACAG+AGG + Chr2:51738317-51738336 MsG0280009425.01.T01:CDS 45.0%
CCAGACAAAAAAGTTTGGGG+TGG + Chr2:51735292-51735311 MsG0280009425.01.T01:intron 45.0%
CCTCTGTATAGTTGACAGCT+TGG - Chr2:51738320-51738339 None:intergenic 45.0%
CGAAGATAGCTTGGTAGGAA+AGG - Chr2:51736720-51736739 None:intergenic 45.0%
CGACAGGAGATGATTAGACA+GGG + Chr2:51737709-51737728 MsG0280009425.01.T01:CDS 45.0%
CGGAGCCAGACAAAAAAGTT+TGG + Chr2:51735287-51735306 MsG0280009425.01.T01:CDS 45.0%
CTCCTTAGCTATACGCCTTT+GGG - Chr2:51737683-51737702 None:intergenic 45.0%
CTGCTCCTGTTTAGTTAGCT+TGG - Chr2:51737647-51737666 None:intergenic 45.0%
CTTAGCAAAGGCTAAGAAGG+CGG + Chr2:51736844-51736863 MsG0280009425.01.T01:CDS 45.0%
CTTTGCTAGCTGTGCTTGTT+TGG - Chr2:51737365-51737384 None:intergenic 45.0%
GAAGGAACGTAGGAGATTTG+GGG + Chr2:51735133-51735152 MsG0280009425.01.T01:CDS 45.0%
GTGAAGCAAAGAAGGAACGT+AGG + Chr2:51735123-51735142 MsG0280009425.01.T01:CDS 45.0%
GTTCATCTATTTCACGTCCC+TGG - Chr2:51737060-51737079 None:intergenic 45.0%
TAACGTCTGGTGTAGCAATC+TGG - Chr2:51736991-51737010 None:intergenic 45.0%
TAATGAGGCTAGGGTTAAGG+AGG + Chr2:51735166-51735185 MsG0280009425.01.T01:CDS 45.0%
TAGTGTGGCTGTGACATCTT+TGG + Chr2:51735241-51735260 MsG0280009425.01.T01:CDS 45.0%
TATCCCTCAGAAACCAACCA+AGG + Chr2:51737012-51737031 MsG0280009425.01.T01:CDS 45.0%
TCATATAAAGGATGGGGTGG+CGG + Chr2:51736656-51736675 MsG0280009425.01.T01:intron 45.0%
TCGACAAAACAAAGCTCCTG+CGG + Chr2:51737230-51737249 MsG0280009425.01.T01:CDS 45.0%
TCTCCTTAGCTATACGCCTT+TGG - Chr2:51737684-51737703 None:intergenic 45.0%
TGAAGAGAGGGAAGATTCAG+TGG + Chr2:51735019-51735038 MsG0280009425.01.T01:CDS 45.0%
TGCCTTAGCAAAGGCTAAGA+AGG + Chr2:51736841-51736860 MsG0280009425.01.T01:CDS 45.0%
TGCTGGGGTTCCTCATTATT+GGG + Chr2:51738293-51738312 MsG0280009425.01.T01:CDS 45.0%
TTCCTCTTATGCGAGGAGTA+TGG - Chr2:51735050-51735069 None:intergenic 45.0%
! AGTGTTGTTGTGGTTGAAGG+TGG + Chr2:51738072-51738091 MsG0280009425.01.T01:CDS 45.0%
! ATGAGGAGGATTCTGGAGAT+GGG + Chr2:51736771-51736790 MsG0280009425.01.T01:CDS 45.0%
! CTAAGGCATCACTACTAGAG+AGG - Chr2:51736829-51736848 None:intergenic 45.0%
! CTCGTGAACTTGTTCAGGTT+CGG + Chr2:51735678-51735697 MsG0280009425.01.T01:intron 45.0%
! GGATTCTCGTGAACTTGTTC+AGG + Chr2:51735673-51735692 MsG0280009425.01.T01:intron 45.0%
! GTGAAGTGTTTGTGGATGCT+GGG + Chr2:51738277-51738296 MsG0280009425.01.T01:CDS 45.0%
! TCCTGTTTAGTTAGCTTGGG+AGG - Chr2:51737643-51737662 None:intergenic 45.0%
! TGAAGTGTTTGTGGATGCTG+GGG + Chr2:51738278-51738297 MsG0280009425.01.T01:CDS 45.0%
! TTAGTTAGCTTGGGAGGTTG+AGG - Chr2:51737637-51737656 None:intergenic 45.0%
! TTCTGAGGGATAGTAACGTC+TGG - Chr2:51737004-51737023 None:intergenic 45.0%
!! CTGGTACCACTTTTGCTTCA+AGG - Chr2:51736138-51736157 None:intergenic 45.0%
!! GAACCTTGGTTGGTTTCTGA+GGG - Chr2:51737018-51737037 None:intergenic 45.0%
!! TACGTACTTCCTTTTCGAGC+CGG - Chr2:51737816-51737835 None:intergenic 45.0%
!!! CCACCCCAAACTTTTTTGTC+TGG - Chr2:51735295-51735314 None:intergenic 45.0%
!! AAAATATTATTTATATAGAA+GGG + Chr2:51736620-51736639 MsG0280009425.01.T01:intron 5.0%
!! TAAAATATTATTTATATAGA+AGG + Chr2:51736619-51736638 MsG0280009425.01.T01:intron 5.0%
AACGCGACCGTAACCATCAT+CGG + Chr2:51734943-51734962 MsG0280009425.01.T01:CDS 50.0%
AAGCAACTCAAGATCCCACC+CGG + Chr2:51737794-51737813 MsG0280009425.01.T01:CDS 50.0%
AATTCATCCTCTTAGGCCGC+AGG - Chr2:51737249-51737268 None:intergenic 50.0%
ACGTCCCACCACTCAATATC+TGG - Chr2:51737472-51737491 None:intergenic 50.0%
ACTATCCCATGTCCGGTATC+GGG - Chr2:51735471-51735490 None:intergenic 50.0%
AGCACAGCTAGCAAAGGCAA+AGG + Chr2:51737369-51737388 MsG0280009425.01.T01:CDS 50.0%
AGCTAAGGAGAAAGAGCGAC+AGG + Chr2:51737693-51737712 MsG0280009425.01.T01:CDS 50.0%
AGCTGCGTGAGAAGAAGGAA+AGG + Chr2:51737902-51737921 MsG0280009425.01.T01:CDS 50.0%
CACCATACTCCTCGCATAAG+AGG + Chr2:51735045-51735064 MsG0280009425.01.T01:CDS 50.0%
CCTTTGTGCTTTCCCGATAC+CGG + Chr2:51735456-51735475 MsG0280009425.01.T01:intron 50.0%
CGAAGAACAGGAACCTTGGT+TGG - Chr2:51737028-51737047 None:intergenic 50.0%
CTTGGTAGGAAAGGAAGCAG+AGG - Chr2:51736711-51736730 None:intergenic 50.0%
GCGACAGGAGATGATTAGAC+AGG + Chr2:51737708-51737727 MsG0280009425.01.T01:CDS 50.0%
GGGTCATCATCTACAACTGC+TGG + Chr2:51736791-51736810 MsG0280009425.01.T01:CDS 50.0%
GTGAGCAGGCTCACATAGAT+AGG + Chr2:51737851-51737870 MsG0280009425.01.T01:CDS 50.0%
! AGATATTGAGTGGTGGGACG+TGG + Chr2:51737471-51737490 MsG0280009425.01.T01:CDS 50.0%
! AGCTGCTCGTGAAGTGTTTG+TGG + Chr2:51738269-51738288 MsG0280009425.01.T01:CDS 50.0%
! CATGAGGAGGATTCTGGAGA+TGG + Chr2:51736770-51736789 MsG0280009425.01.T01:CDS 50.0%
! CGCCTTCTTAGCCTTTGCTA+AGG - Chr2:51736846-51736865 None:intergenic 50.0%
! CGTGAAGTGTTTGTGGATGC+TGG + Chr2:51738276-51738295 MsG0280009425.01.T01:CDS 50.0%
! CTCTTATGCGAGGAGTATGG+TGG - Chr2:51735047-51735066 None:intergenic 50.0%
! GACCCAAAGGCGTATAGCTA+AGG + Chr2:51737678-51737697 MsG0280009425.01.T01:CDS 50.0%
! GGATGTGCGGTGATTTGTGA+TGG + Chr2:51738045-51738064 MsG0280009425.01.T01:CDS 50.0%
! GTATCGGGAAAGCACAAAGG+CGG - Chr2:51735456-51735475 None:intergenic 50.0%
! TCGATGATGGCAGTGGTCAT+CGG - Chr2:51734982-51735001 None:intergenic 50.0%
! TGGAGATTGGTGGCAGAGTT+TGG + Chr2:51736459-51736478 MsG0280009425.01.T01:CDS 50.0%
!! ACGTACTTCCTTTTCGAGCC+GGG - Chr2:51737815-51737834 None:intergenic 50.0%
!! ATCAACTCTATAGCGGGCCT+TGG - Chr2:51737998-51738017 None:intergenic 50.0%
!! GGAACCTTGGTTGGTTTCTG+AGG - Chr2:51737019-51737038 None:intergenic 50.0%
!! TCAACTCTATAGCGGGCCTT+GGG - Chr2:51737997-51738016 None:intergenic 50.0%
!! TGGTGGCAGAGTTTGGTTTG+CGG + Chr2:51736466-51736485 MsG0280009425.01.T01:CDS 50.0%
AAAGGAAGCAGAGGCGGAAC+TGG - Chr2:51736702-51736721 None:intergenic 55.0%
AAGGAAGCAGAGGCGGAACT+GGG - Chr2:51736701-51736720 None:intergenic 55.0%
AGCAGAAGAGGAGGCAGAGA+AGG + Chr2:51736186-51736205 MsG0280009425.01.T01:intron 55.0%
AGCTACAGCAGCAGAAGAGG+AGG + Chr2:51736177-51736196 MsG0280009425.01.T01:intron 55.0%
AGTGGTCATCGGAATCGTGG+CGG - Chr2:51734971-51734990 None:intergenic 55.0%
CCACTGAAAGGAAGGAGGAG+GGG - Chr2:51735267-51735286 None:intergenic 55.0%
CTCCTCCTTCCTTTCAGTGG+CGG + Chr2:51735267-51735286 MsG0280009425.01.T01:CDS 55.0%
GACGTGGCACTTCTGCATTC+TGG + Chr2:51737487-51737506 MsG0280009425.01.T01:CDS 55.0%
GCCACTGAAAGGAAGGAGGA+GGG - Chr2:51735268-51735287 None:intergenic 55.0%
GCTTTCCCGATACCGGACAT+GGG + Chr2:51735463-51735482 MsG0280009425.01.T01:intron 55.0%
GGTAGGAAAGGAAGCAGAGG+CGG - Chr2:51736708-51736727 None:intergenic 55.0%
GTGTGAACGTGTGTGGTGGT+TGG + Chr2:51736491-51736510 MsG0280009425.01.T01:intron 55.0%
GTTCTTCGTCTTGACGCCCA+GGG + Chr2:51737040-51737059 MsG0280009425.01.T01:CDS 55.0%
TCTGGTGTAGCAATCTGGCC+AGG - Chr2:51736986-51737005 None:intergenic 55.0%
TGCAGCTACAGCAGCAGAAG+AGG + Chr2:51736174-51736193 MsG0280009425.01.T01:intron 55.0%
TGCTGAGCTGCGTGAGAAGA+AGG + Chr2:51737897-51737916 MsG0280009425.01.T01:CDS 55.0%
TGCTTTCCCGATACCGGACA+TGG + Chr2:51735462-51735481 MsG0280009425.01.T01:intron 55.0%
TGGGCGTCAAGACGAAGAAC+AGG - Chr2:51737040-51737059 None:intergenic 55.0%
TGTTCTTCGTCTTGACGCCC+AGG + Chr2:51737039-51737058 MsG0280009425.01.T01:CDS 55.0%
TTCTTCTCACGCAGCTCAGC+AGG - Chr2:51737898-51737917 None:intergenic 55.0%
! CCGGTATCGGGAAAGCACAA+AGG - Chr2:51735459-51735478 None:intergenic 55.0%
! GCAGCTGCTTCTTTTGCTGC+TGG - Chr2:51736157-51736176 None:intergenic 55.0%
! GTTAGCTTGGGAGGTTGAGG+TGG - Chr2:51737634-51737653 None:intergenic 55.0%
! TATAAAGGATGGGGTGGCGG+TGG + Chr2:51736659-51736678 MsG0280009425.01.T01:intron 55.0%
!! ACTTCCTTTTCGAGCCGGGT+GGG - Chr2:51737811-51737830 None:intergenic 55.0%
!! TACTTCCTTTTCGAGCCGGG+TGG - Chr2:51737812-51737831 None:intergenic 55.0%
!! TGGCAGAGTTTGGTTTGCGG+TGG + Chr2:51736469-51736488 MsG0280009425.01.T01:CDS 55.0%
AATCGTGGCGGCTCCGATGA+TGG - Chr2:51734959-51734978 None:intergenic 60.0%
AGCTTGGGAGGTTGAGGTGG+TGG - Chr2:51737631-51737650 None:intergenic 60.0%
AGGAAGCAGAGGCGGAACTG+GGG - Chr2:51736700-51736719 None:intergenic 60.0%
CAAAGCTCCTGCGGCCTAAG+AGG + Chr2:51737239-51737258 MsG0280009425.01.T01:CDS 60.0%
CCCCTCCTCCTTCCTTTCAG+TGG + Chr2:51735264-51735283 MsG0280009425.01.T01:CDS 60.0%
CGCCACTGAAAGGAAGGAGG+AGG - Chr2:51735269-51735288 None:intergenic 60.0%
CTCCGCCACTGAAAGGAAGG+AGG - Chr2:51735272-51735291 None:intergenic 60.0%
GGCAGTGGTCATCGGAATCG+TGG - Chr2:51734974-51734993 None:intergenic 60.0%
GGCTCAGCAGGCGGTTCAAT+AGG - Chr2:51737601-51737620 None:intergenic 60.0%
GGGATCACCTGCTGCTAGTG+TGG + Chr2:51735226-51735245 MsG0280009425.01.T01:CDS 60.0%
GGTGGTGTGAACGTGTGTGG+TGG + Chr2:51736487-51736506 MsG0280009425.01.T01:intron 60.0%
GTCACAGCCACACTAGCAGC+AGG - Chr2:51735236-51735255 None:intergenic 60.0%
TGCGGTGGTGTGAACGTGTG+TGG + Chr2:51736484-51736503 MsG0280009425.01.T01:intron 60.0%
TGGCTCCGCCACTGAAAGGA+AGG - Chr2:51735275-51735294 None:intergenic 60.0%
! AGATCCCACCCGGCTCGAAA+AGG + Chr2:51737804-51737823 MsG0280009425.01.T01:CDS 60.0%
! GGCGGCTCCGATGATGGTTA+CGG - Chr2:51734953-51734972 None:intergenic 60.0%
! TGTCTGGCTCCGCCACTGAA+AGG - Chr2:51735279-51735298 None:intergenic 60.0%
! TTGGGAGGTTGAGGTGGTGG+AGG - Chr2:51737628-51737647 None:intergenic 60.0%
!! TGGGAGGTTGAGGTGGTGGA+GGG - Chr2:51737627-51737646 None:intergenic 60.0%
AGCGGGCCTTGGGATGAGAG+AGG - Chr2:51737987-51738006 None:intergenic 65.0%
GAAGCAGAGGCGGAACTGGG+GGG - Chr2:51736698-51736717 None:intergenic 65.0%
GCAGGCGGTTCAATAGGCCG+AGG - Chr2:51737595-51737614 None:intergenic 65.0%
GGAAGCAGAGGCGGAACTGG+GGG - Chr2:51736699-51736718 None:intergenic 65.0%
TGCAGCTGCTGAGCGTGAGC+AGG + Chr2:51737837-51737856 MsG0280009425.01.T01:CDS 65.0%
!! AGGTTGAGGTGGTGGAGGGG+CGG - Chr2:51737623-51737642 None:intergenic 65.0%
!! GGGAGGTTGAGGTGGTGGAG+GGG - Chr2:51737626-51737645 None:intergenic 65.0%
CGGAACTGGGGGGTGGCAAG+GGG - Chr2:51736688-51736707 None:intergenic 70.0%
GCGGAACTGGGGGGTGGCAA+GGG - Chr2:51736689-51736708 None:intergenic 70.0%
GGAACTGGGGGGTGGCAAGG+GGG - Chr2:51736687-51736706 None:intergenic 70.0%
!! GGTTGAGGTGGTGGAGGGGC+GGG - Chr2:51737622-51737641 None:intergenic 70.0%
GCAGAGGCGGAACTGGGGGG+TGG - Chr2:51736695-51736714 None:intergenic 75.0%
GGCGGAACTGGGGGGTGGCA+AGG - Chr2:51736690-51736709 None:intergenic 75.0%
!! GGAGGGGCGGGCTCAGCAGG+CGG - Chr2:51737610-51737629 None:intergenic 80.0%
!! GGTGGAGGGGCGGGCTCAGC+AGG - Chr2:51737613-51737632 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr2 gene 51734930 51738353 51734930 ID=MsG0280009425.01;Name=MsG0280009425.01
Chr2 mRNA 51734930 51738353 51734930 ID=MsG0280009425.01.T01;Parent=MsG0280009425.01;Name=MsG0280009425.01.T01;_AED=0.34;_eAED=0.34;_QI=0|0|0|0.66|1|1|3|0|723
Chr2 exon 51734930 51735310 51734930 ID=MsG0280009425.01.T01:exon:8407;Parent=MsG0280009425.01.T01
Chr2 exon 51736388 51736490 51736388 ID=MsG0280009425.01.T01:exon:8408;Parent=MsG0280009425.01.T01
Chr2 exon 51736666 51738353 51736666 ID=MsG0280009425.01.T01:exon:8409;Parent=MsG0280009425.01.T01
Chr2 CDS 51734930 51735310 51734930 ID=MsG0280009425.01.T01:cds;Parent=MsG0280009425.01.T01
Chr2 CDS 51736388 51736490 51736388 ID=MsG0280009425.01.T01:cds;Parent=MsG0280009425.01.T01
Chr2 CDS 51736666 51738353 51736666 ID=MsG0280009425.01.T01:cds;Parent=MsG0280009425.01.T01
Gene Sequence

>MsG0280009425.01.T01

ATGCGAAACAGAGAACGCGACCGTAACCATCATCGGAGCCGCCACGATTCCGATGACCACTGCCATCATCGATCTAAATCGAAGTGCGATGAAGAGAGGGAAGATTCAGTGGAACCACCATACTCCTCGCATAAGAGGAAAGATAGAGAACATAGCTATGATCGGGAATTGGATGATAAGAGAATTAGGGTTTGTGAAGCAAAGAAGGAACGTAGGAGATTTGGGGATTATTATGATAATGAGGCTAGGGTTAAGGAGGAAGTTACTATTACTAATGGTGATTATTCACTGCATAAGGGATCACCTGCTGCTAGTGTGGCTGTGACATCTTTGGCCCCTCCTCCTTCCTTTCAGTGGCGGAGCCAGACAAAAAAGTTTGGGGGTTTGTTGAGAGAAATGGAGATAGCTCTCTGTTCTCACTTCATAGTTCAGATCGGCGATGAAGATAGAGATGGAGATTGGTGGCAGAGTTTGGTTTGCGGTGGATGGGGTGGCGGTGGCTCCCCCTTGCCACCCCCCAGTTCCGCCTCTGCTTCCTTTCCTACCAAGCTATCTTCGATTACTACTACAATTGAAAATAACAAGTCTCATGAGGAGGATTCTGGAGATGGGTCATCATCTACAACTGCTGGAAAACTTGGAAGCCTCTCTAGTAGTGATGCCTTAGCAAAGGCTAAGAAGGCGGCTTTACAAATGCAGAAATTGTTGTCAGAGAACCTGAAGAAAATTCCTCAGTTGAATAACTCAAATTCACAAGAAAGCACACAGTTGGGTAACAAGACTGAATCTACAGCTATGTTTCCTGGCCAGATTGCTACACCAGACGTTACTATCCCTCAGAAACCAACCAAGGTTCCTGTTCTTCGTCTTGACGCCCAGGGACGTGAAATAGATGAACATGGAAATGTTGTTAATGTTACTAAGCCAACCAACCTTAGCACATTAAAGGTCAACATTAATAAACACAAGAAAGATGCATTTGAAATACTAAAACCTGTATTGGATGTCAATCCTGAATCTAATCCTCATTTTGATGAGAGAATGGGTATCGACAAAACAAAGCTCCTGCGGCCTAAGAGGATGAATTTTCTGTTTGTGGAGGAAGGAAAATGGTCAAGAGATGCTGAATCAATAAAATTGAAGAGTAAATTTGGAGAAGCTCAAGCAAAAGAGCTGAAGGCCAAACAAGCACAGCTAGCAAAGGCAAAGGCTGCTTCTGATATCAATCCGAACTTAATAGAAATTACAAAGAGAGTTGTAATGAAAGAAAAACTGAAGGACCCAATTCCAGATATTGAGTGGTGGGACGTGGCACTTCTGCATTCTGGAAATTATGGTGACATTGCCAACGGTACTATAGATGATGAATGCAAACTGAAAATGGAAAAATTCAACTTTTATGTGGAACATCCTCGGCCTATTGAACCGCCTGCTGAGCCCGCCCCTCCACCACCTCAACCTCCCAAGCTAACTAAACAGGAGCAGAAAAAACTAAGGACCCAAAGGCGTATAGCTAAGGAGAAAGAGCGACAGGAGATGATTAGACAGGGTGTCATAGAACCTCCAAAACCAAAGGTCAAGATGAGTAATTTACATAAGGTACTAGGGACTCAAGCAACTCAAGATCCCACCCGGCTCGAAAAGGAAGTACGTAATGCAGCTGCTGAGCGTGAGCAGGCTCACATAGATAGGAATATTGCACGCAAGCTTACTCCTGCTGAGCTGCGTGAGAAGAAGGAAAGGAAGTTGTATTATGACCCAAATACATTGGACACACCTGTCTCACTTTACAGGGTAAATGACCTCTCTCATCCCAAGGCCCGCTATAGAGTTGATGTTAATGCTCAAGAAAATCGTTTGACTGGATGTGCGGTGATTTGTGATGGTATTAGTGTTGTTGTGGTTGAAGGTGGAAGCAAGTCAATTAAGAGGTATGGGAAACTTATGCGTAGACGTATTGATTGGACTGATGTTTCAAAGGAGAAAGAAGATGATGAAGATGCCAATAAATGTGTTCTGGTGTGGCAAGGAAGTGTTGCCAAATCGAGCTTCAATAGGTTCAGTGTTCATGACTGCATCACTGAAGCAGCTGCTCGTGAAGTGTTTGTGGATGCTGGGGTTCCTCATTATTGGGACCAAGCTGTCAACTATACAGAGGACAATGCTGTTTGA
Protein sequence

>MsG0280009425.01.T01

MRNRERDRNHHRSRHDSDDHCHHRSKSKCDEEREDSVEPPYSSHKRKDREHSYDRELDDKRIRVCEAKKERRRFGDYYDNEARVKEEVTITNGDYSLHKGSPAASVAVTSLAPPPSFQWRSQTKKFGGLLREMEIALCSHFIVQIGDEDRDGDWWQSLVCGGWGGGGSPLPPPSSASASFPTKLSSITTTIENNKSHEEDSGDGSSSTTAGKLGSLSSSDALAKAKKAALQMQKLLSENLKKIPQLNNSNSQESTQLGNKTESTAMFPGQIATPDVTIPQKPTKVPVLRLDAQGREIDEHGNVVNVTKPTNLSTLKVNINKHKKDAFEILKPVLDVNPESNPHFDERMGIDKTKLLRPKRMNFLFVEEGKWSRDAESIKLKSKFGEAQAKELKAKQAQLAKAKAASDINPNLIEITKRVVMKEKLKDPIPDIEWWDVALLHSGNYGDIANGTIDDECKLKMEKFNFYVEHPRPIEPPAEPAPPPPQPPKLTKQEQKKLRTQRRIAKEKERQEMIRQGVIEPPKPKVKMSNLHKVLGTQATQDPTRLEKEVRNAAAEREQAHIDRNIARKLTPAELREKKERKLYYDPNTLDTPVSLYRVNDLSHPKARYRVDVNAQENRLTGCAVICDGISVVVVEGGSKSIKRYGKLMRRRIDWTDVSKEKEDDEDANKCVLVWQGSVAKSSFNRFSVHDCITEAAAREVFVDAGVPHYWDQAVNYTEDNAV*