AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001832.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001832.01.T01 MTR_1g044720 77.895 475 25 5 1 420 25 474 0.0 716
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001832.01.T01 AT2G33340 58.281 477 111 8 1 420 27 472 0.0 525
MsG0180001832.01.T01 AT2G33340 58.281 477 111 8 1 420 27 472 0.0 525
MsG0180001832.01.T01 AT2G33340 58.281 477 111 8 1 420 27 472 0.0 525
MsG0180001832.01.T01 AT1G04510 57.322 478 115 8 1 420 27 473 0.0 517
MsG0180001832.01.T01 AT1G04510 57.322 478 115 8 1 420 27 473 0.0 517

Find 115 sgRNAs with CRISPR-Local

Find 549 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAATCGAAATAGGATTT+TGG 0.119211 1:+27885362 MsG0180001832.01.T01:intron
GACTGCAATGCTGCTCTTTC+CGG 0.154596 1:+27888588 MsG0180001832.01.T01:CDS
GCATTAGCTGTCACAGAATT+TGG 0.171506 1:-27888285 None:intergenic
GACCGGAATCTTCGAATATT+TGG 0.195869 1:+27893065 MsG0180001832.01.T01:three_prime_UTR
ACAGAATTTGGAGTAGAAAT+AGG 0.203246 1:-27888273 None:intergenic
ACAGCTTGGTAATTTCATTT+TGG 0.216380 1:+27893170 MsG0180001832.01.T01:three_prime_UTR
CATCCCGATGGTCTTATTCT+TGG 0.271510 1:+27891815 MsG0180001832.01.T01:CDS
GTGCAGGCAGCAAGCATTCC+TGG 0.291861 1:+27885613 MsG0180001832.01.T01:CDS
TCAAACTCTCCTGATTTATC+TGG 0.300478 1:+27892868 MsG0180001832.01.T01:exon
TTTGGGAAGTGTCCAGTTAC+AGG 0.305772 1:+27885380 MsG0180001832.01.T01:CDS
CGTGATTGCAAGGCTTAAAA+AGG 0.320139 1:+27888203 MsG0180001832.01.T01:CDS
GGATCCTACCTTGCAGTTGC+AGG 0.322521 1:+27892383 MsG0180001832.01.T01:CDS
CAGATTCTCTTGTTAAGATC+TGG 0.332806 1:+27891841 MsG0180001832.01.T01:CDS
GTTGGAGTTGCTGAGTCATA+TGG 0.342835 1:-27892239 None:intergenic
CAGTTGCAGGCTCTGATGTT+AGG 0.348094 1:+27892396 MsG0180001832.01.T01:CDS
GCAAATGTTGCTAAGTTTGA+TGG 0.357923 1:+27891979 MsG0180001832.01.T01:CDS
TCCATTAGCTTTGCCGATCC+AGG 0.358019 1:+27893130 MsG0180001832.01.T01:three_prime_UTR
GGAATGCTTGCTGCCTGCAC+TGG 0.360377 1:-27885610 None:intergenic
CTCATGATGGTGTAAAGCTT+TGG 0.362749 1:+27892180 MsG0180001832.01.T01:CDS
TTTGTGACTGCATCACTTGA+TGG 0.370664 1:+27891487 MsG0180001832.01.T01:CDS
TGCAGTCACAAAGTAATTAT+TGG 0.371362 1:-27891476 None:intergenic
AAATACTTAGCTTGCATCAA+TGG 0.373071 1:+27893043 MsG0180001832.01.T01:three_prime_UTR
CTTGCTGCCTGCACTGGTCT+AGG 0.374275 1:-27885604 None:intergenic
ACTGCAATGCTGCTCTTTCC+GGG 0.374696 1:+27888589 MsG0180001832.01.T01:CDS
CCCTGGATCGGCAAAGCTAA+TGG 0.382389 1:-27893131 None:intergenic
TGTTTATCCTACTTGTAATT+CGG 0.383478 1:+27889884 MsG0180001832.01.T01:CDS
GGATGTAATTTCTTCGCATT+AGG 0.388848 1:-27888531 None:intergenic
ACTCAGCGGTCACTCTAAAA+AGG 0.394859 1:+27889179 MsG0180001832.01.T01:CDS
AAGCGTGAAGTTTGTAGGTC+AGG 0.396085 1:+27889285 MsG0180001832.01.T01:CDS
ATGTCTAACAACAAAATTCC+TGG 0.400890 1:-27893408 None:intergenic
CAGGGTGAATCTATCATAAC+TGG 0.405085 1:+27889304 MsG0180001832.01.T01:CDS
GGCCAAATATTCGAAGATTC+CGG 0.405806 1:-27893067 None:intergenic
AAATCCACATGTGTAAAATT+CGG 0.407717 1:+27893010 MsG0180001832.01.T01:three_prime_UTR
GATATTGTGCCGATCAAAAC+AGG 0.410359 1:+27885422 MsG0180001832.01.T01:CDS
GTAAGCGGCTCTCCTGTAAC+TGG 0.411774 1:-27885392 None:intergenic
TCATGATGGTGTAAAGCTTT+GGG 0.421276 1:+27892181 MsG0180001832.01.T01:CDS
CTGCTTGCCGCGTGATTGCA+AGG 0.421314 1:+27888193 MsG0180001832.01.T01:CDS
TATTGCAGACAGTTCGTTTG+TGG 0.428520 1:+27889748 MsG0180001832.01.T01:intron
CATAACTGGTTCAGCAGATA+AGG 0.431703 1:+27889318 MsG0180001832.01.T01:CDS
TGTTAGCTCAGAAATTATAC+TGG 0.433157 1:-27888565 None:intergenic
TTACAGGACATAATCGCAAC+TGG 0.446375 1:+27889099 MsG0180001832.01.T01:intron
TCTCCTGATTTATCTGGAAC+AGG 0.447214 1:+27892874 MsG0180001832.01.T01:exon
ATTATACTGGAAGATATTCC+AGG 0.453120 1:-27888552 None:intergenic
AACATAATTCACCGATAGAT+AGG 0.453356 1:-27885011 None:intergenic
CAGAATTTGGAGTAGAAATA+GGG 0.462176 1:-27888272 None:intergenic
CTGCATCACTTGATGGCAGC+TGG 0.462700 1:+27891494 MsG0180001832.01.T01:CDS
TACAGGAGAGCCGCTTACTC+TGG 0.463440 1:+27885397 MsG0180001832.01.T01:CDS
TAGTGAGATAATGTAATTGT+TGG 0.464853 1:+27893376 MsG0180001832.01.T01:three_prime_UTR
GTAATATCCATTCTCAGAAA+AGG 0.469986 1:-27892028 None:intergenic
AGATTCTCTTGTTAAGATCT+GGG 0.470622 1:+27891842 MsG0180001832.01.T01:CDS
TAATAGCAGCAGCATGTCCC+TGG 0.471155 1:-27893148 None:intergenic
GAGTCAATACCAGAGTTTGT+TGG 0.471796 1:-27892257 None:intergenic
GCAAGCATTCCTGGCATGCT+TGG 0.474027 1:+27885622 MsG0180001832.01.T01:CDS
GTAACAAGCGTGAAGTTTGT+AGG 0.474487 1:+27889280 MsG0180001832.01.T01:CDS
ATGCTCCTGTTCATAGCAAT+GGG 0.482893 1:+27888304 MsG0180001832.01.T01:CDS
CAGAAATATCTTCGCTAGGT+TGG 0.484089 1:-27893088 None:intergenic
AGACAGTTCGTTTGTGGCAA+GGG 0.486431 1:+27889754 MsG0180001832.01.T01:intron
AGCTGCAGATGTATAGCCTT+CGG 0.487652 1:-27891789 None:intergenic
ATGCTGCTCTTTCCGGGAAG+AGG 0.487878 1:+27888595 MsG0180001832.01.T01:CDS
CTCATTTATAGGAATGGGAT+GGG 0.490049 1:+27885867 MsG0180001832.01.T01:intron
TTCACATACCATGGTGTATG+TGG 0.496836 1:+27893239 MsG0180001832.01.T01:three_prime_UTR
CAGACAGTTCGTTTGTGGCA+AGG 0.499376 1:+27889753 MsG0180001832.01.T01:intron
AATGCTCCTGTTCATAGCAA+TGG 0.505400 1:+27888303 MsG0180001832.01.T01:CDS
TGGAACATTCCAAGCATGCC+AGG 0.505625 1:-27885631 None:intergenic
AGCTGCTGATGACGAGGAGT+TGG 0.507322 1:+27888506 MsG0180001832.01.T01:intron
CCTCATTTATAGGAATGGGA+TGG 0.507870 1:+27885866 MsG0180001832.01.T01:intron
TTGGAGTTGCTGAGTCATAT+GGG 0.509156 1:-27892238 None:intergenic
TATGTTTATGTCCTATCTAT+CGG 0.511246 1:+27885000 None:intergenic
GTACCTGTTCCAGATAAATC+AGG 0.512887 1:-27892877 None:intergenic
AGTCATATGGGCCATAGTCC+CGG 0.517272 1:-27892226 None:intergenic
GTAGTTTCCTTCACATACCA+TGG 0.517376 1:+27893230 MsG0180001832.01.T01:three_prime_UTR
CAAAGTAATTATTGGTGGCA+TGG 0.525985 1:-27891468 None:intergenic
TTTCCAAGAATAAGACCATC+GGG 0.526614 1:-27891818 None:intergenic
AACAAAATTCCTGGTAGCAA+TGG 0.530161 1:-27893399 None:intergenic
GCTAAGTTTGATGGACATGT+TGG 0.531185 1:+27891988 MsG0180001832.01.T01:CDS
AGTGAAGCCTAGACCAGTGC+AGG 0.532479 1:+27885597 MsG0180001832.01.T01:CDS
AGCGTGAAGTTTGTAGGTCA+GGG 0.533196 1:+27889286 MsG0180001832.01.T01:CDS
AAAAGGAACGAGACGAAGCT+AGG 0.533326 1:+27888220 MsG0180001832.01.T01:CDS
TTGTCAGAAATATCTTCGCT+AGG 0.533415 1:-27893092 None:intergenic
TAACTGCAAACAGATCTTGA+AGG 0.534904 1:+27889794 MsG0180001832.01.T01:CDS
AATTGTTGGCCATTGCTACC+AGG 0.534982 1:+27893390 MsG0180001832.01.T01:three_prime_UTR
GTTCATAGCAATGGGAAAAG+AGG 0.541436 1:+27888312 MsG0180001832.01.T01:CDS
CTAAGTTTGATGGACATGTT+GGG 0.541761 1:+27891989 MsG0180001832.01.T01:CDS
TTGCAAATGTGAAATCTGAA+TGG 0.541920 1:+27892838 MsG0180001832.01.T01:CDS
GTAGCTAATACTTGTCCTGA+TGG 0.546408 1:-27889156 None:intergenic
TTGTGGCAAGGGTCAGATGA+TGG 0.550255 1:+27889765 MsG0180001832.01.T01:CDS
CCATTAGCTTTGCCGATCCA+GGG 0.557628 1:+27893131 MsG0180001832.01.T01:three_prime_UTR
TTTCATACCGAATTACAAGT+AGG 0.560373 1:-27889891 None:intergenic
AGCTAGGTCTATACTTGCAC+AGG 0.561984 1:+27888236 MsG0180001832.01.T01:CDS
TAGGTTTCTGACTCTTCCGA+AGG 0.569370 1:+27891773 MsG0180001832.01.T01:intron
CTTAGCTTGCATCAATGGAC+CGG 0.573892 1:+27893048 MsG0180001832.01.T01:three_prime_UTR
CTATACTTGCACAGGCAGAA+AGG 0.575588 1:+27888244 MsG0180001832.01.T01:CDS
TCAGCAACTCCAACAAACTC+TGG 0.577891 1:+27892248 MsG0180001832.01.T01:CDS
AGAGCCTGCAACTGCAAGGT+AGG 0.584256 1:-27892387 None:intergenic
GTTTCCAAGAATAAGACCAT+CGG 0.586441 1:-27891819 None:intergenic
GTTAAGTCATGCTCTATACC+AGG 0.586754 1:+27885943 MsG0180001832.01.T01:CDS
AATGCGAAGAAATTACATCC+TGG 0.591581 1:+27888534 MsG0180001832.01.T01:CDS
AGTCACAAAGTAATTATTGG+TGG 0.592605 1:-27891473 None:intergenic
GCAGCAGCATGTCCCTGGAT+CGG 0.597209 1:-27893143 None:intergenic
AATCTGAGTCTGTATTGCCT+CGG 0.598525 1:+27893329 MsG0180001832.01.T01:three_prime_UTR
ATGCTGCTGCTATTACAGCT+TGG 0.600460 1:+27893156 MsG0180001832.01.T01:three_prime_UTR
CTAATACTTGTCCTGATGGA+CGG 0.602167 1:-27889152 None:intergenic
CATCAGAGCCTGCAACTGCA+AGG 0.620846 1:-27892391 None:intergenic
ACATACACCATGGTATGTGA+AGG 0.629136 1:-27893237 None:intergenic
ACAATATCATCCAGAGTAAG+CGG 0.631161 1:-27885407 None:intergenic
AGCAGCAGTTGCATACAGCA+AGG 0.634251 1:+27885915 MsG0180001832.01.T01:CDS
TGATAGACCGCAGCTCATGA+TGG 0.652388 1:+27892167 MsG0180001832.01.T01:intron
TGTGCCGATCAAAACAGGCA+AGG 0.675176 1:+27885427 MsG0180001832.01.T01:CDS
TGAGAATGGATATTACCTTG+CGG 0.683014 1:+27892035 MsG0180001832.01.T01:CDS
CTTTACACCATCATGAGCTG+CGG 0.684333 1:-27892174 None:intergenic
ATACCATGGTGTATGTGGAG+TGG 0.684790 1:+27893244 MsG0180001832.01.T01:three_prime_UTR
GCTCCACTCCACATACACCA+TGG 0.696162 1:-27893247 None:intergenic
GCAGTGGAGTTTGACCACAG+TGG 0.700459 1:+27892362 MsG0180001832.01.T01:intron
CAAGTATTAGCTACACTCAG+CGG 0.734442 1:+27889165 MsG0180001832.01.T01:CDS
CTGCAAGGTAGGATCCACTG+TGG 0.800585 1:-27892376 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACCTTAATATATAAAAAT+AGG - Chr1:27887393-27887412 None:intergenic 10.0%
!! AATATAAAAGAAAAAATGTT+CGG - Chr1:27891561-27891580 None:intergenic 10.0%
!! ACTAATTTAATTGAAATATA+TGG - Chr1:27890706-27890725 None:intergenic 10.0%
!! TATTTCCTATAATTTATAAT+TGG + Chr1:27886062-27886081 MsG0180001832.01.T01:intron 10.0%
!!! AGCAAAATATTTTTTAATTA+AGG + Chr1:27888950-27888969 MsG0180001832.01.T01:intron 10.0%
!!! TTGTAAAATAATAAATGTTT+TGG + Chr1:27890066-27890085 MsG0180001832.01.T01:intron 10.0%
!!! TTTTATTTTGAAATGATATT+TGG + Chr1:27891950-27891969 MsG0180001832.01.T01:intron 10.0%
!! AAAACTAAAATTAACAACTA+GGG - Chr1:27888157-27888176 None:intergenic 15.0%
!! AAGAAAGTTATAAAGAATTA+TGG - Chr1:27886821-27886840 None:intergenic 15.0%
!! AGAAACCAATTATAAATTAT+AGG - Chr1:27886070-27886089 None:intergenic 15.0%
!! ATTTAATAATGAAATTCAAG+AGG - Chr1:27886142-27886161 None:intergenic 15.0%
!! CAAAAATCAATATAATTCTT+CGG - Chr1:27892744-27892763 None:intergenic 15.0%
!! TAAAACTAAAATTAACAACT+AGG - Chr1:27888158-27888177 None:intergenic 15.0%
!! TAAGATAATAACTAATCAAA+GGG + Chr1:27887699-27887718 MsG0180001832.01.T01:intron 15.0%
!! TATATAAAATGAATCTCAAA+TGG - Chr1:27887193-27887212 None:intergenic 15.0%
!! TGATAAGAATTTATAAATAG+AGG + Chr1:27891025-27891044 MsG0180001832.01.T01:intron 15.0%
!! TTAAGATAATAACTAATCAA+AGG + Chr1:27887698-27887717 MsG0180001832.01.T01:intron 15.0%
!!! AAAATGATTTTTTTCTTTTC+TGG + Chr1:27886163-27886182 MsG0180001832.01.T01:intron 15.0%
!!! AACTCCTATTTTATATATTA+AGG + Chr1:27887253-27887272 MsG0180001832.01.T01:intron 15.0%
!!! ACTCCTATTTTTATATATTA+AGG + Chr1:27887387-27887406 MsG0180001832.01.T01:intron 15.0%
!!! ATTTTATATATTCTCAGATA+AGG + Chr1:27887203-27887222 MsG0180001832.01.T01:intron 15.0%
!!! CACCAAATTTAATTTAAATT+GGG - Chr1:27891093-27891112 None:intergenic 15.0%
!!! TATTTTCTTCATATGAAAAT+TGG + Chr1:27886683-27886702 MsG0180001832.01.T01:intron 15.0%
!!! TGTAATTTCAAATTTTTCAA+AGG - Chr1:27888709-27888728 None:intergenic 15.0%
!!! TTCTTTTTTAAAAAAACTTG+AGG + Chr1:27891225-27891244 MsG0180001832.01.T01:intron 15.0%
!!! TTTTTGATTAAAAAAAAGAC+AGG + Chr1:27887742-27887761 MsG0180001832.01.T01:intron 15.0%
!! AAAAAAATTGTCCAGAAAAT+CGG - Chr1:27886797-27886816 None:intergenic 20.0%
!! AAAACATGAAGAAAATTGAT+TGG - Chr1:27886586-27886605 None:intergenic 20.0%
!! AAAGTAATACCTTAGAATAA+AGG - Chr1:27888994-27889013 None:intergenic 20.0%
!! AAATAGTGAAAAATCGTAAA+TGG - Chr1:27886668-27886687 None:intergenic 20.0%
!! AAGATAATAACTAATCAAAG+GGG + Chr1:27887700-27887719 MsG0180001832.01.T01:intron 20.0%
!! ACAAGAAACAATGAAAAATT+AGG - Chr1:27889861-27889880 None:intergenic 20.0%
!! ACTACCTTATAAAATTAGAA+AGG - Chr1:27889356-27889375 None:intergenic 20.0%
!! ACTTTAAACTCTAATGTTTA+GGG - Chr1:27888394-27888413 None:intergenic 20.0%
!! ATTAGAAAATGGATAAAGAT+AGG - Chr1:27887099-27887118 None:intergenic 20.0%
!! ATTCTAGTATGTAAATAGTA+GGG - Chr1:27892300-27892319 None:intergenic 20.0%
!! ATTTATAAGTTAATTGTTCC+AGG + Chr1:27885743-27885762 MsG0180001832.01.T01:intron 20.0%
!! CCAATTTAAATTAAATTTGG+TGG + Chr1:27891091-27891110 MsG0180001832.01.T01:intron 20.0%
!! CTACCTTATAAAATTAGAAA+GGG - Chr1:27889355-27889374 None:intergenic 20.0%
!! TAAAATTACAAAGAAGCAAT+AGG - Chr1:27886403-27886422 None:intergenic 20.0%
!! TAAAGATTTATAGACCATTA+GGG - Chr1:27889719-27889738 None:intergenic 20.0%
!! TAAGTCAAACAAATGAAAAA+AGG - Chr1:27888009-27888028 None:intergenic 20.0%
!! TACGCCTTAATATATAAAAT+AGG - Chr1:27887260-27887279 None:intergenic 20.0%
!! TATAGGAAATATTAATAACC+CGG - Chr1:27886053-27886072 None:intergenic 20.0%
!! TATTCTAGTATGTAAATAGT+AGG - Chr1:27892301-27892320 None:intergenic 20.0%
!! TTAAAGATTTATAGACCATT+AGG - Chr1:27889720-27889739 None:intergenic 20.0%
!! TTAATCATTACCAATCTAAA+GGG - Chr1:27892713-27892732 None:intergenic 20.0%
!! TTTAATCATTACCAATCTAA+AGG - Chr1:27892714-27892733 None:intergenic 20.0%
!!! AAAATATCAAGTGTGAATTT+TGG - Chr1:27889570-27889589 None:intergenic 20.0%
!!! AAATTTTTTCCCTCATTTAT+AGG + Chr1:27885856-27885875 MsG0180001832.01.T01:intron 20.0%
!!! AGCATATATGAATTATGTTT+TGG + Chr1:27885066-27885085 MsG0180001832.01.T01:intron 20.0%
!!! ATAAAACTTGATTGTCTTTT+TGG + Chr1:27890019-27890038 MsG0180001832.01.T01:intron 20.0%
!!! ATTTTATTCTATCATGTGTT+TGG - Chr1:27887002-27887021 None:intergenic 20.0%
!!! CCACCAAATTTAATTTAAAT+TGG - Chr1:27891094-27891113 None:intergenic 20.0%
!!! CGAAGAATTATATTGATTTT+TGG + Chr1:27892742-27892761 MsG0180001832.01.T01:intron 20.0%
!!! GAAAATTTGAAATCATTATC+AGG - Chr1:27888103-27888122 None:intergenic 20.0%
!!! GCATATATGAATTATGTTTT+GGG + Chr1:27885067-27885086 MsG0180001832.01.T01:intron 20.0%
!!! GTAATTTTAATCCTTAGTTT+TGG + Chr1:27886414-27886433 MsG0180001832.01.T01:intron 20.0%
!!! GTTTTGGTATACAAATTATT+GGG + Chr1:27890972-27890991 MsG0180001832.01.T01:intron 20.0%
!!! TAAAACTTGATTGTCTTTTT+GGG + Chr1:27890020-27890039 MsG0180001832.01.T01:intron 20.0%
!!! TAAATGTTTTGTTATGCAAT+AGG + Chr1:27885236-27885255 MsG0180001832.01.T01:intron 20.0%
!!! TAACAGACTTTAAAACATTT+TGG + Chr1:27890561-27890580 MsG0180001832.01.T01:intron 20.0%
!!! TAGTTTTCATGATATTTTTC+AGG + Chr1:27885284-27885303 MsG0180001832.01.T01:intron 20.0%
!!! TATCCCTTTCTAATTTTATA+AGG + Chr1:27889349-27889368 MsG0180001832.01.T01:intron 20.0%
!!! TCAAATTCACAATTTTAAGA+CGG - Chr1:27889667-27889686 None:intergenic 20.0%
!!! TCTAATTTTATAAGGTAGTT+TGG + Chr1:27889357-27889376 MsG0180001832.01.T01:intron 20.0%
!!! TCTTTTACTATTGGAAAATA+AGG + Chr1:27887336-27887355 MsG0180001832.01.T01:intron 20.0%
!!! TGTAGAAGATAATAATTTGT+TGG - Chr1:27885991-27886010 None:intergenic 20.0%
!!! TTCTATACATACATACATTT+TGG - Chr1:27885654-27885673 None:intergenic 20.0%
!!! TTTTAGCAAAAGTTTGTTTT+GGG + Chr1:27890612-27890631 MsG0180001832.01.T01:intron 20.0%
! AAAAATGATTGGAGTAACAT+TGG - Chr1:27886748-27886767 None:intergenic 25.0%
! AAAACATCAAATTGTAGTGA+AGG - Chr1:27891177-27891196 None:intergenic 25.0%
! AAAATGATTGGAGTAACATT+GGG - Chr1:27886747-27886766 None:intergenic 25.0%
! AAAGTAATACCTTAGAATGA+AGG - Chr1:27888908-27888927 None:intergenic 25.0%
! AAATCCACATGTGTAAAATT+CGG + Chr1:27893010-27893029 MsG0180001832.01.T01:three_prime_UTR 25.0%
! AAATCGTAATTCAGAAAGAT+TGG - Chr1:27886856-27886875 None:intergenic 25.0%
! AATAATGAAATTCAAGAGGA+TGG - Chr1:27886138-27886157 None:intergenic 25.0%
! AATACTACATGTGTATGTTA+TGG - Chr1:27892944-27892963 None:intergenic 25.0%
! AATAGGATAGGATAAGTAAT+AGG - Chr1:27886386-27886405 None:intergenic 25.0%
! AATCGTAATTCAGAAAGATT+GGG - Chr1:27886855-27886874 None:intergenic 25.0%
! ACACACATAATTAAATCGAT+TGG - Chr1:27886946-27886965 None:intergenic 25.0%
! AGAATAATAATAGATAGGAG+CGG - Chr1:27892916-27892935 None:intergenic 25.0%
! AGGTACAATAAATTAGTTCA+AGG - Chr1:27892793-27892812 None:intergenic 25.0%
! ATAGGAAAATAAAAGAACCA+CGG - Chr1:27885531-27885550 None:intergenic 25.0%
! ATCATAATGTTAAGGAGTTA+AGG - Chr1:27890223-27890242 None:intergenic 25.0%
! CACACATAATTAAATCGATT+GGG - Chr1:27886945-27886964 None:intergenic 25.0%
! CACTTTAAACTCTAATGTTT+AGG - Chr1:27888395-27888414 None:intergenic 25.0%
! CAGGAAGAATAATAATAGAT+AGG - Chr1:27892921-27892940 None:intergenic 25.0%
! CTTTAAACTCTAATGTTTAG+GGG - Chr1:27888393-27888412 None:intergenic 25.0%
! GAATATTGTACCTATTCATA+AGG + Chr1:27892316-27892335 MsG0180001832.01.T01:intron 25.0%
! GGCCCAATTTAAATTAAATT+TGG + Chr1:27891088-27891107 MsG0180001832.01.T01:intron 25.0%
! TAATTGTTCCAGGAATTTAA+TGG + Chr1:27885753-27885772 MsG0180001832.01.T01:intron 25.0%
! TAGCAGGTTTATCATTAATA+TGG + Chr1:27892083-27892102 MsG0180001832.01.T01:intron 25.0%
! TAGTGAGATAATGTAATTGT+TGG + Chr1:27893376-27893395 MsG0180001832.01.T01:three_prime_UTR 25.0%
! TATATCTTATCATCTTGTTG+AGG + Chr1:27888338-27888357 MsG0180001832.01.T01:intron 25.0%
! TATCGTTGAATGAAGAAAAT+GGG + Chr1:27885150-27885169 MsG0180001832.01.T01:intron 25.0%
! TATGTTTATGTCCTATCTAT+AGG + Chr1:27885028-27885047 MsG0180001832.01.T01:intron 25.0%
! TCTGCATTTAAATAAACTGT+CGG - Chr1:27890905-27890924 None:intergenic 25.0%
! TCTTGATATCCTTTATTCTA+AGG + Chr1:27888982-27889001 MsG0180001832.01.T01:intron 25.0%
! TGATTGGGAAGAAAATATAT+TGG - Chr1:27886615-27886634 None:intergenic 25.0%
! TGGAGCAAAAAATATATTCA+AGG + Chr1:27893264-27893283 MsG0180001832.01.T01:three_prime_UTR 25.0%
! TGTATGTATGTATAGAATTG+AGG + Chr1:27885657-27885676 MsG0180001832.01.T01:intron 25.0%
! TGTTTATCCTACTTGTAATT+CGG + Chr1:27889884-27889903 MsG0180001832.01.T01:CDS 25.0%
! TTAAACAAAACTAGCAAACA+GGG + Chr1:27888864-27888883 MsG0180001832.01.T01:intron 25.0%
! TTGTTGAAAACAATCGAAAT+AGG + Chr1:27885355-27885374 MsG0180001832.01.T01:intron 25.0%
! TTTAAACTCTAATGTTTAGG+GGG - Chr1:27888392-27888411 None:intergenic 25.0%
!! AAAACTTGATTGTCTTTTTG+GGG + Chr1:27890021-27890040 MsG0180001832.01.T01:intron 25.0%
!! AAACAATCGAAATAGGATTT+TGG + Chr1:27885362-27885381 MsG0180001832.01.T01:intron 25.0%
!! AACAAACTTTTGCTAAAACA+TGG - Chr1:27890610-27890629 None:intergenic 25.0%
!! AACAATCGAAATAGGATTTT+GGG + Chr1:27885363-27885382 MsG0180001832.01.T01:intron 25.0%
!! AATATTAATAACCCGGTTTT+AGG - Chr1:27886046-27886065 None:intergenic 25.0%
!! ATTGAAAAGTTTCCTTTTTG+AGG - Chr1:27890150-27890169 None:intergenic 25.0%
!! TATTTTCTTCCCAATCAATT+TGG + Chr1:27886618-27886637 MsG0180001832.01.T01:intron 25.0%
!! TGGTAATTTCATTTTGGATA+GGG + Chr1:27893176-27893195 MsG0180001832.01.T01:three_prime_UTR 25.0%
!! TTTGCAGTTTGATAATTATC+AGG + Chr1:27885556-27885575 MsG0180001832.01.T01:intron 25.0%
!!! AAGCTAAGTATTTTGAATCT+GGG - Chr1:27893036-27893055 None:intergenic 25.0%
!!! ACTTTAAAACATTTTGGTTG+TGG + Chr1:27890567-27890586 MsG0180001832.01.T01:intron 25.0%
!!! ATTTTAATCCTTAGTTTTGG+TGG + Chr1:27886417-27886436 MsG0180001832.01.T01:intron 25.0%
!!! CTTATTTTAGTTGGAATTGA+AGG + Chr1:27889207-27889226 MsG0180001832.01.T01:intron 25.0%
!!! GGTTTTGGTATACAAATTAT+TGG + Chr1:27890971-27890990 MsG0180001832.01.T01:intron 25.0%
!!! GTTTTAGCAAAAGTTTGTTT+TGG + Chr1:27890611-27890630 MsG0180001832.01.T01:intron 25.0%
!!! TCTATATCTCTTAGCTTTTA+CGG + Chr1:27886260-27886279 MsG0180001832.01.T01:intron 25.0%
!!! TGTTTGCTAGTTTTGTTTAA+GGG - Chr1:27888864-27888883 None:intergenic 25.0%
!!! TTGGTAATTTCATTTTGGAT+AGG + Chr1:27893175-27893194 MsG0180001832.01.T01:three_prime_UTR 25.0%
!!! TTTTAATCCTTAGTTTTGGT+GGG + Chr1:27886418-27886437 MsG0180001832.01.T01:intron 25.0%
AAAAATTAGGAACAGCAATG+TGG - Chr1:27889848-27889867 None:intergenic 30.0%
AAAATGTAACCAGTATTAGC+AGG + Chr1:27892067-27892086 MsG0180001832.01.T01:intron 30.0%
AAATGCAAATGTAAATCGCA+AGG - Chr1:27889599-27889618 None:intergenic 30.0%
AACATAATTCACCGATAGAT+AGG - Chr1:27885014-27885033 None:intergenic 30.0%
AATATGGTAAGTGGTCTAAT+TGG - Chr1:27890480-27890499 None:intergenic 30.0%
AATCGTTCAAATTCTGATTC+AGG - Chr1:27890852-27890871 None:intergenic 30.0%
AATGATAAACCTGCTAATAC+TGG - Chr1:27892079-27892098 None:intergenic 30.0%
AATGCAAATGTAAATCGCAA+GGG - Chr1:27889598-27889617 None:intergenic 30.0%
ACTAAAATTAACAACTAGGG+CGG - Chr1:27888154-27888173 None:intergenic 30.0%
AGACTTGTAAAAGTTAACTG+TGG - Chr1:27890278-27890297 None:intergenic 30.0%
AGATTCTCTTGTTAAGATCT+GGG + Chr1:27891842-27891861 MsG0180001832.01.T01:CDS 30.0%
AGCCTGTTATCATAATGTTA+AGG - Chr1:27890231-27890250 None:intergenic 30.0%
AGTCAAGAATAGCAATCATA+AGG - Chr1:27891308-27891327 None:intergenic 30.0%
AGTCACAAAGTAATTATTGG+TGG - Chr1:27891476-27891495 None:intergenic 30.0%
ATAATGTTAAGGAGTTAAGG+AGG - Chr1:27890220-27890239 None:intergenic 30.0%
ATCAAACTGCAAATACACAT+AGG - Chr1:27885549-27885568 None:intergenic 30.0%
ATCACGTTAAAAATTATCCG+AGG - Chr1:27893349-27893368 None:intergenic 30.0%
ATCGTTGAATGAAGAAAATG+GGG + Chr1:27885151-27885170 MsG0180001832.01.T01:intron 30.0%
ATGTCTAACAACAAAATTCC+TGG - Chr1:27893411-27893430 None:intergenic 30.0%
ATTAGTTCAAGGAAAGACTA+TGG - Chr1:27892782-27892801 None:intergenic 30.0%
ATTATACTGGAAGATATTCC+AGG - Chr1:27888555-27888574 None:intergenic 30.0%
CAACTTGAACCATTTATTTC+AGG + Chr1:27892986-27893005 MsG0180001832.01.T01:intron 30.0%
CACATGATAGGATTAGAAAA+TGG - Chr1:27887110-27887129 None:intergenic 30.0%
CATAGTTCACATAAATTCAC+AGG - Chr1:27889543-27889562 None:intergenic 30.0%
CATTTATCCTATCATGTGTT+TGG - Chr1:27887055-27887074 None:intergenic 30.0%
CTATCGTTGAATGAAGAAAA+TGG + Chr1:27885149-27885168 MsG0180001832.01.T01:intron 30.0%
CTCCTTAACATTATGATAAC+AGG + Chr1:27890226-27890245 MsG0180001832.01.T01:intron 30.0%
CTGCATTTAAATAAACTGTC+GGG - Chr1:27890904-27890923 None:intergenic 30.0%
CTGTGAATTTATGTGAACTA+TGG + Chr1:27889541-27889560 MsG0180001832.01.T01:intron 30.0%
CTTAAACAAAACTAGCAAAC+AGG + Chr1:27888863-27888882 MsG0180001832.01.T01:intron 30.0%
CTTTCAAATCTCCTATAGAT+AGG - Chr1:27885042-27885061 None:intergenic 30.0%
GAAAACTTACACTAACGAAT+CGG - Chr1:27886116-27886135 None:intergenic 30.0%
GTAATATCCATTCTCAGAAA+AGG - Chr1:27892031-27892050 None:intergenic 30.0%
GTACATTATCATGTTGTGAT+GGG - Chr1:27886193-27886212 None:intergenic 30.0%
GTGGATTTACCTGAAATAAA+TGG - Chr1:27892998-27893017 None:intergenic 30.0%
GTTGCACAAAACATAACATT+GGG - Chr1:27886775-27886794 None:intergenic 30.0%
GTTTATGAAATCCTGATTCT+TGG - Chr1:27891277-27891296 None:intergenic 30.0%
TAATGAGTATCCTTTGATTG+TGG + Chr1:27890429-27890448 MsG0180001832.01.T01:intron 30.0%
TAATTCTTTGTATCTTGCAG+TGG + Chr1:27892346-27892365 MsG0180001832.01.T01:intron 30.0%
TACACATTACAACTAAGTAC+AGG + Chr1:27887771-27887790 MsG0180001832.01.T01:intron 30.0%
TCAACAGACACATCTATTAT+GGG - Chr1:27889627-27889646 None:intergenic 30.0%
TCAAGATAAGAAATCATACC+AGG - Chr1:27888068-27888087 None:intergenic 30.0%
TCGGTATGAAATTGAATCTT+GGG + Chr1:27889903-27889922 MsG0180001832.01.T01:intron 30.0%
TCTTGATATCCTTCATTCTA+AGG + Chr1:27888896-27888915 MsG0180001832.01.T01:intron 30.0%
TGATATGATAGACACATGAT+AGG - Chr1:27887122-27887141 None:intergenic 30.0%
TGATTGGAATTGATATCGAT+TGG - Chr1:27886570-27886589 None:intergenic 30.0%
TGCAGTCACAAAGTAATTAT+TGG - Chr1:27891479-27891498 None:intergenic 30.0%
TGTTAGCTCAGAAATTATAC+TGG - Chr1:27888568-27888587 None:intergenic 30.0%
TTACAAAGAAGCAATAGGAT+AGG - Chr1:27886398-27886417 None:intergenic 30.0%
TTAGATGAGACCTTATGAAT+AGG - Chr1:27892329-27892348 None:intergenic 30.0%
TTATCTTCAATCCAAGAATC+AGG + Chr1:27891263-27891282 MsG0180001832.01.T01:intron 30.0%
TTATGATAACAGGCTTATTC+AGG + Chr1:27890236-27890255 MsG0180001832.01.T01:intron 30.0%
TTCAACAGACACATCTATTA+TGG - Chr1:27889628-27889647 None:intergenic 30.0%
TTCGGTATGAAATTGAATCT+TGG + Chr1:27889902-27889921 MsG0180001832.01.T01:intron 30.0%
TTCTTCATTCAACGATAGAT+AGG - Chr1:27885147-27885166 None:intergenic 30.0%
TTGAAATGATATTTGGTTGC+AGG + Chr1:27891957-27891976 MsG0180001832.01.T01:intron 30.0%
TTGCAAATGTGAAATCTGAA+TGG + Chr1:27892838-27892857 MsG0180001832.01.T01:CDS 30.0%
TTGGGAAGAAAATATATTGG+AGG - Chr1:27886612-27886631 None:intergenic 30.0%
TTGGGTAAACATTTGATCAA+TGG - Chr1:27892687-27892706 None:intergenic 30.0%
TTTCATACCGAATTACAAGT+AGG - Chr1:27889894-27889913 None:intergenic 30.0%
TTTCCCTCATTTATAGGAAT+GGG + Chr1:27885862-27885881 MsG0180001832.01.T01:intron 30.0%
! AAGTTTTCCTGACAAATACT+TGG + Chr1:27885790-27885809 MsG0180001832.01.T01:intron 30.0%
! ACAGAATTTGGAGTAGAAAT+AGG - Chr1:27888276-27888295 None:intergenic 30.0%
! ATAATTTTGTTACCCTTACC+TGG - Chr1:27885964-27885983 None:intergenic 30.0%
! ATCAACTTATTCCGTTTTAC+AGG + Chr1:27889083-27889102 MsG0180001832.01.T01:intron 30.0%
! ATCACAACATGATAATGTAC+GGG + Chr1:27886193-27886212 MsG0180001832.01.T01:intron 30.0%
! ATGCAAAACTACATCTTTTC+AGG - Chr1:27889695-27889714 None:intergenic 30.0%
! ATTGATTCATAAGTGTCTTG+TGG + Chr1:27891592-27891611 MsG0180001832.01.T01:intron 30.0%
! CAGAATTTGGAGTAGAAATA+GGG - Chr1:27888275-27888294 None:intergenic 30.0%
! CATCACAACATGATAATGTA+CGG + Chr1:27886192-27886211 MsG0180001832.01.T01:intron 30.0%
! GACAATGATTTGGCATTTAT+AGG + Chr1:27891754-27891773 MsG0180001832.01.T01:intron 30.0%
! GATGCTATCTAATTTTGCAT+TGG + Chr1:27885892-27885911 MsG0180001832.01.T01:CDS 30.0%
! GATTGGAATTGATATCGATT+GGG - Chr1:27886569-27886588 None:intergenic 30.0%
! GTTGCGATTTCTTTTACTAT+TGG + Chr1:27887327-27887346 MsG0180001832.01.T01:intron 30.0%
! TGCAAAACTACATCTTTTCA+GGG - Chr1:27889694-27889713 None:intergenic 30.0%
! TGCTTTTATGAACTATCTTC+AGG + Chr1:27891517-27891536 MsG0180001832.01.T01:intron 30.0%
! TTTTCCCTCATTTATAGGAA+TGG + Chr1:27885861-27885880 MsG0180001832.01.T01:intron 30.0%
!! AAATACTTAGCTTGCATCAA+TGG + Chr1:27893043-27893062 MsG0180001832.01.T01:three_prime_UTR 30.0%
!! ACAGCTTGGTAATTTCATTT+TGG + Chr1:27893170-27893189 MsG0180001832.01.T01:three_prime_UTR 30.0%
!! AGTTTTATCCTACTTGTACT+AGG - Chr1:27890007-27890026 None:intergenic 30.0%
!! CAAGCTAAGTATTTTGAATC+TGG - Chr1:27893037-27893056 None:intergenic 30.0%
!! GAAGTTGGAGAGTATTTAAA+TGG + Chr1:27887795-27887814 MsG0180001832.01.T01:intron 30.0%
!! TACCAATCTAAAGGGTATTT+GGG - Chr1:27892705-27892724 None:intergenic 30.0%
!! TAGAGGTGTCTAAAAGAATA+CGG + Chr1:27891625-27891644 MsG0180001832.01.T01:intron 30.0%
!! TTACCAATCTAAAGGGTATT+TGG - Chr1:27892706-27892725 None:intergenic 30.0%
!! TTTGATAGCTTTATGCTATC+AGG - Chr1:27886451-27886470 None:intergenic 30.0%
!!! AAAACATTTTGGTTGTGGAT+TGG + Chr1:27890572-27890591 MsG0180001832.01.T01:intron 30.0%
!!! AAACATTTTGGTTGTGGATT+GGG + Chr1:27890573-27890592 MsG0180001832.01.T01:intron 30.0%
!!! AAGTTGTTTTTGCATAGCTT+AGG + Chr1:27892567-27892586 MsG0180001832.01.T01:intron 30.0%
!!! AGTTGTTTTTGCATAGCTTA+GGG + Chr1:27892568-27892587 MsG0180001832.01.T01:intron 30.0%
!!! CTGTTTGCTAGTTTTGTTTA+AGG - Chr1:27888865-27888884 None:intergenic 30.0%
!!! GAATTATGTTTTGGGAGATT+TGG + Chr1:27885075-27885094 MsG0180001832.01.T01:intron 30.0%
!!! TAAATGGCGAGAAGTTTTTT+TGG + Chr1:27887811-27887830 MsG0180001832.01.T01:intron 30.0%
AAAACACAATTGGTTGTGTC+TGG - Chr1:27889499-27889518 None:intergenic 35.0%
AAACTAATGTGCAATGACTG+AGG + Chr1:27889060-27889079 MsG0180001832.01.T01:intron 35.0%
AAAGCTAAGAGATATAGACC+AGG - Chr1:27886258-27886277 None:intergenic 35.0%
AAATCGATTGGGAACAAGAT+TGG - Chr1:27886934-27886953 None:intergenic 35.0%
AAATTATGCCAGTAAGAGAG+GGG + Chr1:27887904-27887923 MsG0180001832.01.T01:intron 35.0%
AACAAAATTCCTGGTAGCAA+TGG - Chr1:27893402-27893421 None:intergenic 35.0%
AAGTGTATCAAGTTTCGCAA+TGG + Chr1:27888658-27888677 MsG0180001832.01.T01:intron 35.0%
AATATCCTGCATAAAGTAGC+AGG - Chr1:27892813-27892832 None:intergenic 35.0%
AATCGATTGGGAACAAGATT+GGG - Chr1:27886933-27886952 None:intergenic 35.0%
AATGCGAAGAAATTACATCC+TGG + Chr1:27888534-27888553 MsG0180001832.01.T01:CDS 35.0%
ACAAGGAATGTAGCAATACA+TGG - Chr1:27889471-27889490 None:intergenic 35.0%
ACAATATCATCCAGAGTAAG+CGG - Chr1:27885410-27885429 None:intergenic 35.0%
ACTTCTTATCTGGTACAGAA+TGG - Chr1:27890822-27890841 None:intergenic 35.0%
AGAAACCACCATTAAATTCC+TGG - Chr1:27885764-27885783 None:intergenic 35.0%
AGAAATTATGCCAGTAAGAG+AGG + Chr1:27887902-27887921 MsG0180001832.01.T01:intron 35.0%
AGGATTGAGAACTTCTTATC+TGG - Chr1:27890832-27890851 None:intergenic 35.0%
ATATGTTTGCAGCCTAAAAC+CGG + Chr1:27886031-27886050 MsG0180001832.01.T01:intron 35.0%
ATCAGAGATCTATCCAATCT+AGG - Chr1:27891009-27891028 None:intergenic 35.0%
ATCATATCATACGCACCAAA+CGG + Chr1:27887133-27887152 MsG0180001832.01.T01:intron 35.0%
ATTCCTTCCAAGTATTTGTC+AGG - Chr1:27885800-27885819 None:intergenic 35.0%
CAACAGACACATCTATTATG+GGG - Chr1:27889626-27889645 None:intergenic 35.0%
CAAGAATTAACAGCACATAG+GGG - Chr1:27888451-27888470 None:intergenic 35.0%
CAAGATTGGGAAGAAAATGA+TGG - Chr1:27886920-27886939 None:intergenic 35.0%
CAGATTCTCTTGTTAAGATC+TGG + Chr1:27891841-27891860 MsG0180001832.01.T01:CDS 35.0%
CATCCCATTCCTATAAATGA+GGG - Chr1:27885868-27885887 None:intergenic 35.0%
CATTGGGAAGCAAAAATGAT+TGG - Chr1:27886759-27886778 None:intergenic 35.0%
CGCATAAATGAGAACCTTAA+GGG - Chr1:27887160-27887179 None:intergenic 35.0%
CGTACATTATCATGTTGTGA+TGG - Chr1:27886194-27886213 None:intergenic 35.0%
CTCATTTATAGGAATGGGAT+GGG + Chr1:27885867-27885886 MsG0180001832.01.T01:intron 35.0%
CTTCATGTTACAATTCGTCA+GGG + Chr1:27887578-27887597 MsG0180001832.01.T01:intron 35.0%
CTTGTTTGTGACATGTTCTA+TGG + Chr1:27888767-27888786 MsG0180001832.01.T01:intron 35.0%
GAAATTATGCCAGTAAGAGA+GGG + Chr1:27887903-27887922 MsG0180001832.01.T01:intron 35.0%
GACAAAGGAAATGTGAAAGA+TGG + Chr1:27887849-27887868 MsG0180001832.01.T01:intron 35.0%
GCAAACATATTCCACCAATT+GGG - Chr1:27886021-27886040 None:intergenic 35.0%
GCAAATGTTGCTAAGTTTGA+TGG + Chr1:27891979-27891998 MsG0180001832.01.T01:CDS 35.0%
GCAAGAATTAACAGCACATA+GGG - Chr1:27888452-27888471 None:intergenic 35.0%
GGATGTAATTTCTTCGCATT+AGG - Chr1:27888534-27888553 None:intergenic 35.0%
GGTTGCACAAAACATAACAT+TGG - Chr1:27886776-27886795 None:intergenic 35.0%
GGTTTCTTGTAAGATTCGAT+TGG + Chr1:27886083-27886102 MsG0180001832.01.T01:intron 35.0%
GTCTAGTGTAGAAGAGTTAT+TGG + Chr1:27892430-27892449 MsG0180001832.01.T01:intron 35.0%
GTGTATGAGAGAAACATAAC+TGG - Chr1:27891382-27891401 None:intergenic 35.0%
GTTTCCAAGAATAAGACCAT+CGG - Chr1:27891822-27891841 None:intergenic 35.0%
TAACTGCAAACAGATCTTGA+AGG + Chr1:27889794-27889813 MsG0180001832.01.T01:CDS 35.0%
TACCCAAATACCCTTTAGAT+TGG + Chr1:27892700-27892719 MsG0180001832.01.T01:intron 35.0%
TATGAGAGAAACATAACTGG+CGG - Chr1:27891379-27891398 None:intergenic 35.0%
TCAAACTCTCCTGATTTATC+TGG + Chr1:27892868-27892887 MsG0180001832.01.T01:exon 35.0%
TCGCATAAATGAGAACCTTA+AGG - Chr1:27887161-27887180 None:intergenic 35.0%
TCGTAGAGAGATGATAGTTA+TGG + Chr1:27889952-27889971 MsG0180001832.01.T01:intron 35.0%
TCTTCATGTTACAATTCGTC+AGG + Chr1:27887577-27887596 MsG0180001832.01.T01:intron 35.0%
TGACTCTCTCTTATTGTCAA+TGG + Chr1:27892274-27892293 MsG0180001832.01.T01:intron 35.0%
TGAGAATGGATATTACCTTG+CGG + Chr1:27892035-27892054 MsG0180001832.01.T01:CDS 35.0%
TGCAAACATATTCCACCAAT+TGG - Chr1:27886022-27886041 None:intergenic 35.0%
TGCATCATGCAAAACACAAT+TGG - Chr1:27889509-27889528 None:intergenic 35.0%
TGCGATTATGTCCTGTAAAA+CGG - Chr1:27889097-27889116 None:intergenic 35.0%
TGCTATTCTTGACTATCTGA+GGG + Chr1:27891314-27891333 MsG0180001832.01.T01:intron 35.0%
TGTTGAATGTCATTCTCACT+TGG + Chr1:27889641-27889660 MsG0180001832.01.T01:intron 35.0%
TTCAAGGAAAGACTATGGAA+TGG - Chr1:27892777-27892796 None:intergenic 35.0%
TTCACATAAATTCACAGGTC+TGG - Chr1:27889538-27889557 None:intergenic 35.0%
TTCTACAGTTATGTCCCAAT+TGG + Chr1:27886004-27886023 MsG0180001832.01.T01:intron 35.0%
TTGAAATCATTATCAGGCAC+AGG - Chr1:27888097-27888116 None:intergenic 35.0%
TTGAGTGTGCAGTTTATAAG+TGG + Chr1:27885486-27885505 MsG0180001832.01.T01:intron 35.0%
TTGTCAGAAATATCTTCGCT+AGG - Chr1:27893095-27893114 None:intergenic 35.0%
TTGTTCCAGGAATTTAATGG+TGG + Chr1:27885756-27885775 MsG0180001832.01.T01:intron 35.0%
TTTATCCTACTTGTACTAGG+TGG - Chr1:27890004-27890023 None:intergenic 35.0%
TTTCCAAGAATAAGACCATC+GGG - Chr1:27891821-27891840 None:intergenic 35.0%
TTTCCTGACAAATACTTGGA+AGG + Chr1:27885794-27885813 MsG0180001832.01.T01:intron 35.0%
TTTGGGGATTGTAAACTCAA+GGG - Chr1:27886231-27886250 None:intergenic 35.0%
! ATAGCTTTTGCCACAATCAA+AGG - Chr1:27890442-27890461 None:intergenic 35.0%
! ATTTGCCTTTCCAACTTTTC+AGG + Chr1:27891429-27891448 MsG0180001832.01.T01:intron 35.0%
! CAAAGTAATTATTGGTGGCA+TGG - Chr1:27891471-27891490 None:intergenic 35.0%
! CTAAGTTTGATGGACATGTT+GGG + Chr1:27891989-27892008 MsG0180001832.01.T01:CDS 35.0%
! TACGCAAGTTGAAAAACTTC+CGG + Chr1:27892207-27892226 MsG0180001832.01.T01:CDS 35.0%
! TCATGATGGTGTAAAGCTTT+GGG + Chr1:27892181-27892200 MsG0180001832.01.T01:CDS 35.0%
! TTGCTATTCTTGACTATCTG+AGG + Chr1:27891313-27891332 MsG0180001832.01.T01:intron 35.0%
!! AGAGGTGTCTAAAAGAATAC+GGG + Chr1:27891626-27891645 MsG0180001832.01.T01:intron 35.0%
!! GCAATATCCTTTTCTGAGAA+TGG + Chr1:27892021-27892040 MsG0180001832.01.T01:CDS 35.0%
!! TGTAGTTTTGCATTCCCTAA+TGG + Chr1:27889702-27889721 MsG0180001832.01.T01:intron 35.0%
!! TTACCTACCAAAAGCATTAC+AGG - Chr1:27889264-27889283 None:intergenic 35.0%
!!! AAGGTCGGTCTTATTTTAGT+TGG + Chr1:27889198-27889217 MsG0180001832.01.T01:intron 35.0%
!!! AGTGCATGTTTGTTTTGCAT+TGG - Chr1:27890643-27890662 None:intergenic 35.0%
!!! CTTGTGGAATAGTTTTGTAG+AGG + Chr1:27891608-27891627 MsG0180001832.01.T01:intron 35.0%
!!! GTTGTTTTTGCATAGCTTAG+GGG + Chr1:27892569-27892588 MsG0180001832.01.T01:intron 35.0%
!!! TGCTAGTTTTGTTTAAGGGA+TGG - Chr1:27888860-27888879 None:intergenic 35.0%
AACAGTCGTAGATTATGTCG+TGG + Chr1:27890391-27890410 MsG0180001832.01.T01:intron 40.0%
AACATAACTGGCGGGAAATA+AGG - Chr1:27891370-27891389 None:intergenic 40.0%
AAGAGGTGAAGTCCTCAAAA+AGG + Chr1:27890135-27890154 MsG0180001832.01.T01:intron 40.0%
AAGAGTAATCGAAGGGAGAA+GGG + Chr1:27887639-27887658 MsG0180001832.01.T01:intron 40.0%
AATCCCAGTATGCGATTTGT+AGG - Chr1:27887538-27887557 None:intergenic 40.0%
AATCTGAGTCTGTATTGCCT+CGG + Chr1:27893329-27893348 MsG0180001832.01.T01:three_prime_UTR 40.0%
AATGCTCCTGTTCATAGCAA+TGG + Chr1:27888303-27888322 MsG0180001832.01.T01:CDS 40.0%
AATTATGCCAGTAAGAGAGG+GGG + Chr1:27887905-27887924 MsG0180001832.01.T01:intron 40.0%
ACAGTCGTAGATTATGTCGT+GGG + Chr1:27890392-27890411 MsG0180001832.01.T01:intron 40.0%
ACATACACCATGGTATGTGA+AGG - Chr1:27893240-27893259 None:intergenic 40.0%
ACCTAGCAGTCAAGAGTTTA+TGG - Chr1:27890954-27890973 None:intergenic 40.0%
ACTATTTGACCAGGGTAAAG+AGG - Chr1:27890764-27890783 None:intergenic 40.0%
AGAGGTTTACTGAGGAATAG+AGG - Chr1:27886481-27886500 None:intergenic 40.0%
AGATATAGACCAGGAAGGTT+TGG - Chr1:27886249-27886268 None:intergenic 40.0%
AGGAAATGTGAAAGATGGTG+TGG + Chr1:27887854-27887873 MsG0180001832.01.T01:intron 40.0%
ATATAGACCAGGAAGGTTTG+GGG - Chr1:27886247-27886266 None:intergenic 40.0%
ATCCCAGTATGCGATTTGTA+GGG - Chr1:27887537-27887556 None:intergenic 40.0%
ATGAGAGAAACATAACTGGC+GGG - Chr1:27891378-27891397 None:intergenic 40.0%
ATGCTCCTGTTCATAGCAAT+GGG + Chr1:27888304-27888323 MsG0180001832.01.T01:CDS 40.0%
ATGTGATCGAACTCAATGTG+CGG - Chr1:27890370-27890389 None:intergenic 40.0%
ATTTCAGATTCCTGCGACTT+TGG + Chr1:27888793-27888812 MsG0180001832.01.T01:intron 40.0%
CAACTAAGTACAGGTGAAGT+TGG + Chr1:27887780-27887799 MsG0180001832.01.T01:intron 40.0%
CAAGTATTAGCTACACTCAG+CGG + Chr1:27889165-27889184 MsG0180001832.01.T01:CDS 40.0%
CACACACACACACACATTAA+TGG + Chr1:27888731-27888750 MsG0180001832.01.T01:intron 40.0%
CAGAAATATCTTCGCTAGGT+TGG - Chr1:27893091-27893110 None:intergenic 40.0%
CAGGGTGAATCTATCATAAC+TGG + Chr1:27889304-27889323 MsG0180001832.01.T01:CDS 40.0%
CCAACATGTCAAGGTCAATA+TGG - Chr1:27890496-27890515 None:intergenic 40.0%
CCATATTGACCTTGACATGT+TGG + Chr1:27890493-27890512 MsG0180001832.01.T01:intron 40.0%
CCATCCCATTCCTATAAATG+AGG - Chr1:27885869-27885888 None:intergenic 40.0%
CCTAGCAGTCAAGAGTTTAT+GGG - Chr1:27890953-27890972 None:intergenic 40.0%
CCTCATTTATAGGAATGGGA+TGG + Chr1:27885866-27885885 MsG0180001832.01.T01:intron 40.0%
CGCAAGAATTAACAGCACAT+AGG - Chr1:27888453-27888472 None:intergenic 40.0%
CGTGATTGCAAGGCTTAAAA+AGG + Chr1:27888203-27888222 MsG0180001832.01.T01:CDS 40.0%
CTAACTCATCCTTGCAAAAC+CGG - Chr1:27891069-27891088 None:intergenic 40.0%
CTAAGAGATATAGACCAGGA+AGG - Chr1:27886254-27886273 None:intergenic 40.0%
CTAATACTTGTCCTGATGGA+CGG - Chr1:27889155-27889174 None:intergenic 40.0%
CTACATGTGTATGTTATGGC+AGG - Chr1:27892940-27892959 None:intergenic 40.0%
GACCGGAATCTTCGAATATT+TGG + Chr1:27893065-27893084 MsG0180001832.01.T01:three_prime_UTR 40.0%
GAGTCAATACCAGAGTTTGT+TGG - Chr1:27892260-27892279 None:intergenic 40.0%
GAGTCTGTTCTCACTGAAAA+AGG + Chr1:27887674-27887693 MsG0180001832.01.T01:intron 40.0%
GATATAGACCAGGAAGGTTT+GGG - Chr1:27886248-27886267 None:intergenic 40.0%
GCATTAGCTGTCACAGAATT+TGG - Chr1:27888288-27888307 None:intergenic 40.0%
GGAAATGTGAAAGATGGTGT+GGG + Chr1:27887855-27887874 MsG0180001832.01.T01:intron 40.0%
GGATGTACGACTTACTAAAG+AGG - Chr1:27891145-27891164 None:intergenic 40.0%
GGCCAAATATTCGAAGATTC+CGG - Chr1:27893070-27893089 None:intergenic 40.0%
GGGATTTGTGTTCATGTTCA+CGG + Chr1:27887552-27887571 MsG0180001832.01.T01:intron 40.0%
GTAACAAGCGTGAAGTTTGT+AGG + Chr1:27889280-27889299 MsG0180001832.01.T01:CDS 40.0%
GTAAGTGGTCTAATTGGCAT+AGG - Chr1:27890474-27890493 None:intergenic 40.0%
GTACCTGTTCCAGATAAATC+AGG - Chr1:27892880-27892899 None:intergenic 40.0%
GTAGCTAATACTTGTCCTGA+TGG - Chr1:27889159-27889178 None:intergenic 40.0%
GTAGTTTCCTTCACATACCA+TGG + Chr1:27893230-27893249 MsG0180001832.01.T01:three_prime_UTR 40.0%
GTCAAGGTCAATATGGTAAG+TGG - Chr1:27890489-27890508 None:intergenic 40.0%
GTGCAACAGCCAAATTGATT+GGG - Chr1:27886630-27886649 None:intergenic 40.0%
GTTAAGTCATGCTCTATACC+AGG + Chr1:27885943-27885962 MsG0180001832.01.T01:CDS 40.0%
GTTCATAGCAATGGGAAAAG+AGG + Chr1:27888312-27888331 MsG0180001832.01.T01:CDS 40.0%
GTTTGGGGATTGTAAACTCA+AGG - Chr1:27886232-27886251 None:intergenic 40.0%
TAAGAGTAATCGAAGGGAGA+AGG + Chr1:27887638-27887657 MsG0180001832.01.T01:intron 40.0%
TAAGGAGTTAAGGAGGAATG+AGG - Chr1:27890213-27890232 None:intergenic 40.0%
TACAGTTATGTCCCAATTGG+TGG + Chr1:27886007-27886026 MsG0180001832.01.T01:intron 40.0%
TAGGAGCGGAAAAATCAAGA+CGG - Chr1:27892902-27892921 None:intergenic 40.0%
TATGTTTGCAGCCTAAAACC+GGG + Chr1:27886032-27886051 MsG0180001832.01.T01:intron 40.0%
TATTGCAGACAGTTCGTTTG+TGG + Chr1:27889748-27889767 MsG0180001832.01.T01:intron 40.0%
TCAAAACAGGCAAGGTATGT+TGG + Chr1:27885435-27885454 MsG0180001832.01.T01:intron 40.0%
TCATACCAGGAAAGAACAGT+TGG - Chr1:27888055-27888074 None:intergenic 40.0%
TCATGCTCTATACCAGGTAA+GGG + Chr1:27885949-27885968 MsG0180001832.01.T01:intron 40.0%
TCATTGTCAACTCAGCACTT+AGG - Chr1:27891742-27891761 None:intergenic 40.0%
TCCCTTCGATTACTCTTAGA+AGG - Chr1:27887636-27887655 None:intergenic 40.0%
TGTACGCAACTATTTGACCA+GGG - Chr1:27890772-27890791 None:intergenic 40.0%
TGTGCAACAGCCAAATTGAT+TGG - Chr1:27886631-27886650 None:intergenic 40.0%
TTAAGGAGGAATGAGGAAGT+GGG - Chr1:27890206-27890225 None:intergenic 40.0%
TTACAGGACATAATCGCAAC+TGG + Chr1:27889099-27889118 MsG0180001832.01.T01:intron 40.0%
TTCACATACCATGGTGTATG+TGG + Chr1:27893239-27893258 MsG0180001832.01.T01:three_prime_UTR 40.0%
TTCCACCTGAAAAGTTGGAA+AGG - Chr1:27891437-27891456 None:intergenic 40.0%
TTGAAAAACTTCCGGGACTA+TGG + Chr1:27892215-27892234 MsG0180001832.01.T01:CDS 40.0%
TTGCTAACCCACCAAAACTA+AGG - Chr1:27886428-27886447 None:intergenic 40.0%
TTGGAGTTGCTGAGTCATAT+GGG - Chr1:27892241-27892260 None:intergenic 40.0%
TTTATTCACAGCGAATCGTG+TGG + Chr1:27885178-27885197 MsG0180001832.01.T01:intron 40.0%
TTTCTCCAACTGTTCTTTCC+TGG + Chr1:27888047-27888066 MsG0180001832.01.T01:intron 40.0%
TTTGGCTGTTGCACATGAAT+TGG + Chr1:27886636-27886655 MsG0180001832.01.T01:intron 40.0%
TTTGTGACTGCATCACTTGA+TGG + Chr1:27891487-27891506 MsG0180001832.01.T01:CDS 40.0%
! AACTCTTGACTGCTAGGTTT+TGG + Chr1:27890956-27890975 MsG0180001832.01.T01:intron 40.0%
! ACGCAAGTTGAAAAACTTCC+GGG + Chr1:27892208-27892227 MsG0180001832.01.T01:CDS 40.0%
! ACGGGAAAGATTGATGACAA+AGG + Chr1:27887834-27887853 MsG0180001832.01.T01:intron 40.0%
! AGATCTATCCAATCTAGGAC+TGG - Chr1:27891004-27891023 None:intergenic 40.0%
! CATAACTGGTTCAGCAGATA+AGG + Chr1:27889318-27889337 MsG0180001832.01.T01:CDS 40.0%
! CTCATGATGGTGTAAAGCTT+TGG + Chr1:27892180-27892199 MsG0180001832.01.T01:CDS 40.0%
! CTTTTCAATTTCACTTCCCC+TGG + Chr1:27890161-27890180 MsG0180001832.01.T01:intron 40.0%
! CTTTTCCCATTGCTATGAAC+AGG - Chr1:27888312-27888331 None:intergenic 40.0%
! GAGGTGTCTAAAAGAATACG+GGG + Chr1:27891627-27891646 MsG0180001832.01.T01:intron 40.0%
! GATATTGTGCCGATCAAAAC+AGG + Chr1:27885422-27885441 MsG0180001832.01.T01:CDS 40.0%
! GATCTATCCAATCTAGGACT+GGG - Chr1:27891003-27891022 None:intergenic 40.0%
! GATCTGGGATGTAAAAAGTC+AGG + Chr1:27891857-27891876 MsG0180001832.01.T01:CDS 40.0%
! GCCTTCTAAGAGTAATCGAA+GGG + Chr1:27887632-27887651 MsG0180001832.01.T01:intron 40.0%
! GCTAAGTTTGATGGACATGT+TGG + Chr1:27891988-27892007 MsG0180001832.01.T01:CDS 40.0%
! GTGCTGAGTTGACAATGATT+TGG + Chr1:27891744-27891763 MsG0180001832.01.T01:intron 40.0%
! TAGCTGACCTGTAATGCTTT+TGG + Chr1:27889254-27889273 MsG0180001832.01.T01:intron 40.0%
! TCTCCTGATTTATCTGGAAC+AGG + Chr1:27892874-27892893 MsG0180001832.01.T01:exon 40.0%
! TGACCTGTAATGCTTTTGGT+AGG + Chr1:27889258-27889277 MsG0180001832.01.T01:intron 40.0%
! TTTTAAGCCTTGCAATCACG+CGG - Chr1:27888203-27888222 None:intergenic 40.0%
!! GTTTTGTGCAACCGATTTTC+TGG + Chr1:27886783-27886802 MsG0180001832.01.T01:intron 40.0%
!! TTGTACCTGCTACTTTATGC+AGG + Chr1:27892805-27892824 MsG0180001832.01.T01:intron 40.0%
!! TTTTTGAGGACTTCACCTCT+TGG - Chr1:27890136-27890155 None:intergenic 40.0%
!!! CATACCTTGCCTGTTTTGAT+CGG - Chr1:27885434-27885453 None:intergenic 40.0%
!!! CATTTTTTTCACGTACCGCA+AGG - Chr1:27892053-27892072 None:intergenic 40.0%
!!! GTTATTTTTGACCGTCCATC+AGG + Chr1:27889141-27889160 MsG0180001832.01.T01:CDS 40.0%
!!! TGGCGAGAAGTTTTTTTGGA+CGG + Chr1:27887815-27887834 MsG0180001832.01.T01:intron 40.0%
AAAAGGAACGAGACGAAGCT+AGG + Chr1:27888220-27888239 MsG0180001832.01.T01:CDS 45.0%
AACTCAGCACTTAGGTAGGA+AGG - Chr1:27891734-27891753 None:intergenic 45.0%
AACTGTGGAGCAACAGAGTA+GGG - Chr1:27890263-27890282 None:intergenic 45.0%
AAGCGTGAAGTTTGTAGGTC+AGG + Chr1:27889285-27889304 MsG0180001832.01.T01:CDS 45.0%
AATTGTTGGCCATTGCTACC+AGG + Chr1:27893390-27893409 MsG0180001832.01.T01:three_prime_UTR 45.0%
ACAGCTTCCACCTGAAAAGT+TGG - Chr1:27891442-27891461 None:intergenic 45.0%
AGAACCACGGCTAACATGAA+CGG - Chr1:27885518-27885537 None:intergenic 45.0%
AGACAGTTCGTTTGTGGCAA+GGG + Chr1:27889754-27889773 MsG0180001832.01.T01:intron 45.0%
AGAGCTGTTTGTGAGAATGC+TGG - Chr1:27890541-27890560 None:intergenic 45.0%
AGCGTGAAGTTTGTAGGTCA+GGG + Chr1:27889286-27889305 MsG0180001832.01.T01:CDS 45.0%
AGCTAGGTCTATACTTGCAC+AGG + Chr1:27888236-27888255 MsG0180001832.01.T01:CDS 45.0%
AGCTGCAGATGTATAGCCTT+CGG - Chr1:27891792-27891811 None:intergenic 45.0%
AGGGAGAAGGGAAAATGAGA+AGG + Chr1:27887651-27887670 MsG0180001832.01.T01:intron 45.0%
ATACCATGGTGTATGTGGAG+TGG + Chr1:27893244-27893263 MsG0180001832.01.T01:three_prime_UTR 45.0%
ATGAGGAAGTGGGAGGTTAA+CGG - Chr1:27890196-27890215 None:intergenic 45.0%
ATGCTGCTGCTATTACAGCT+TGG + Chr1:27893156-27893175 MsG0180001832.01.T01:three_prime_UTR 45.0%
ATTCGTCAGGGAAGATGTGT+TGG + Chr1:27887590-27887609 MsG0180001832.01.T01:intron 45.0%
CCCATAAACTCTTGACTGCT+AGG + Chr1:27890950-27890969 MsG0180001832.01.T01:intron 45.0%
CCTGCTTAAATCCGTTGCTT+GGG + Chr1:27886333-27886352 MsG0180001832.01.T01:intron 45.0%
CGATTACTCTTAGAAGGCCA+AGG - Chr1:27887630-27887649 None:intergenic 45.0%
CTATACTTGCACAGGCAGAA+AGG + Chr1:27888244-27888263 MsG0180001832.01.T01:CDS 45.0%
CTATCATGTGTTTGGCGCAA+AGG - Chr1:27886994-27887013 None:intergenic 45.0%
CTCCCTACAAATCGCATACT+GGG + Chr1:27887532-27887551 MsG0180001832.01.T01:intron 45.0%
CTTCACCTCTTGGATTCTTG+AGG - Chr1:27890126-27890145 None:intergenic 45.0%
CTTTACACCATCATGAGCTG+CGG - Chr1:27892177-27892196 None:intergenic 45.0%
GAAGATGTGTTGGGAGTTTG+GGG + Chr1:27887600-27887619 MsG0180001832.01.T01:intron 45.0%
GAGTCGAAAGAGGTTTACTG+AGG - Chr1:27886489-27886508 None:intergenic 45.0%
GCACATAGGGGAAGCTATTA+AGG - Chr1:27888439-27888458 None:intergenic 45.0%
GCTTTCAACAAGGACTTCAC+AGG - Chr1:27890519-27890538 None:intergenic 45.0%
GGAAAAACCCAGTCCTAGAT+TGG + Chr1:27890993-27891012 MsG0180001832.01.T01:intron 45.0%
GGAAGATGTGTTGGGAGTTT+GGG + Chr1:27887599-27887618 MsG0180001832.01.T01:intron 45.0%
GGAGATATCTCTGACTAAGG+TGG - Chr1:27890349-27890368 None:intergenic 45.0%
GGGAGAAGGGAAAATGAGAA+GGG + Chr1:27887652-27887671 MsG0180001832.01.T01:intron 45.0%
GGTAGGAAGGAATGCAGTAA+AGG - Chr1:27891721-27891740 None:intergenic 45.0%
GGTTGTGTCTGGAGAAAACA+AGG - Chr1:27889488-27889507 None:intergenic 45.0%
GTAGGGAGAGTGACTGAATT+TGG - Chr1:27887520-27887539 None:intergenic 45.0%
GTCATGCTCTATACCAGGTA+AGG + Chr1:27885948-27885967 MsG0180001832.01.T01:intron 45.0%
GTGTACGCAACTATTTGACC+AGG - Chr1:27890773-27890792 None:intergenic 45.0%
GTGTGCACCAAACACATGAT+AGG + Chr1:27887045-27887064 MsG0180001832.01.T01:intron 45.0%
GTTAACGGTTCAGAGAACCA+GGG - Chr1:27890181-27890200 None:intergenic 45.0%
GTTAAGGAGGAATGAGGAAG+TGG - Chr1:27890207-27890226 None:intergenic 45.0%
GTTGGAGTTGCTGAGTCATA+TGG - Chr1:27892242-27892261 None:intergenic 45.0%
TAACTGTGGAGCAACAGAGT+AGG - Chr1:27890264-27890283 None:intergenic 45.0%
TAGAAGCAGAGAGTCGAAAG+AGG - Chr1:27886499-27886518 None:intergenic 45.0%
TAGCAACATCCTCTTTACCC+TGG + Chr1:27890752-27890771 MsG0180001832.01.T01:intron 45.0%
TAGGTTTCTGACTCTTCCGA+AGG + Chr1:27891773-27891792 MsG0180001832.01.T01:intron 45.0%
TCAGCAACTCCAACAAACTC+TGG + Chr1:27892248-27892267 MsG0180001832.01.T01:CDS 45.0%
TCCTGCTTAAATCCGTTGCT+TGG + Chr1:27886332-27886351 MsG0180001832.01.T01:intron 45.0%
TCTCCCTACAAATCGCATAC+TGG + Chr1:27887531-27887550 MsG0180001832.01.T01:intron 45.0%
TGCGGAGATATCTCTGACTA+AGG - Chr1:27890352-27890371 None:intergenic 45.0%
TGGCATGCATTTGATGTGAG+CGG - Chr1:27890802-27890821 None:intergenic 45.0%
TGGTTTCACAGCTCAGAAGT+TGG + Chr1:27889377-27889396 MsG0180001832.01.T01:intron 45.0%
TGTCAACTCAGCACTTAGGT+AGG - Chr1:27891738-27891757 None:intergenic 45.0%
TTAACGGTTCAGAGAACCAG+GGG - Chr1:27890180-27890199 None:intergenic 45.0%
TTACAATCCCCAAACCTTCC+TGG + Chr1:27886237-27886256 MsG0180001832.01.T01:intron 45.0%
TTATGTCGTGGGATGTCAGT+CGG + Chr1:27890403-27890422 MsG0180001832.01.T01:intron 45.0%
TTCAGGAACTTGTCTGACTC+AGG + Chr1:27891534-27891553 MsG0180001832.01.T01:intron 45.0%
TTCGTCAGGGAAGATGTGTT+GGG + Chr1:27887591-27887610 MsG0180001832.01.T01:intron 45.0%
! ACTCAGCGGTCACTCTAAAA+AGG + Chr1:27889179-27889198 MsG0180001832.01.T01:CDS 45.0%
! AGCGGTCACTCTAAAAAGGT+CGG + Chr1:27889183-27889202 MsG0180001832.01.T01:intron 45.0%
! CAGGCAAGGTATGTTGGTAA+TGG + Chr1:27885441-27885460 MsG0180001832.01.T01:intron 45.0%
! CGGTTTTGCAAGGATGAGTT+AGG + Chr1:27891067-27891086 MsG0180001832.01.T01:intron 45.0%
! GGCCTTCTAAGAGTAATCGA+AGG + Chr1:27887631-27887650 MsG0180001832.01.T01:intron 45.0%
! TGGGCCGAATTTTACACATG+TGG - Chr1:27893017-27893036 None:intergenic 45.0%
!! CATCCCGATGGTCTTATTCT+TGG + Chr1:27891815-27891834 MsG0180001832.01.T01:CDS 45.0%
!! CTTAGCTTGCATCAATGGAC+CGG + Chr1:27893048-27893067 MsG0180001832.01.T01:three_prime_UTR 45.0%
!! CTTAGCTTTTACGGCCTGTT+TGG + Chr1:27886269-27886288 MsG0180001832.01.T01:intron 45.0%
!! GAGAATGCTGGCTTTCAACA+AGG - Chr1:27890529-27890548 None:intergenic 45.0%
!! GTCTGCTCTAAGACGAAAGA+GGG - Chr1:27889421-27889440 None:intergenic 45.0%
!! TGCCTTTCCAACTTTTCAGG+TGG + Chr1:27891432-27891451 MsG0180001832.01.T01:intron 45.0%
!! TGTCTGCTCTAAGACGAAAG+AGG - Chr1:27889422-27889441 None:intergenic 45.0%
!! TTGTAGTGAAGGTACTCGAC+TGG - Chr1:27891166-27891185 None:intergenic 45.0%
!! TTTGGGAAGTGTCCAGTTAC+AGG + Chr1:27885380-27885399 MsG0180001832.01.T01:CDS 45.0%
!!! GGCGAGAAGTTTTTTTGGAC+GGG + Chr1:27887816-27887835 MsG0180001832.01.T01:intron 45.0%
!!! TGTTTTAGCTGCTGATGACG+AGG + Chr1:27888500-27888519 MsG0180001832.01.T01:intron 45.0%
!! AAAAAATAAAATCATTAATA+TGG + Chr1:27892119-27892138 MsG0180001832.01.T01:intron 5.0%
!! TAAATGATAAATTTAATATT+TGG + Chr1:27887978-27887997 MsG0180001832.01.T01:intron 5.0%
ACTGCAATGCTGCTCTTTCC+GGG + Chr1:27888589-27888608 MsG0180001832.01.T01:CDS 50.0%
AGCAGCAGTTGCATACAGCA+AGG + Chr1:27885915-27885934 MsG0180001832.01.T01:CDS 50.0%
AGTCATATGGGCCATAGTCC+CGG - Chr1:27892229-27892248 None:intergenic 50.0%
CAGACAGTTCGTTTGTGGCA+AGG + Chr1:27889753-27889772 MsG0180001832.01.T01:intron 50.0%
CGACACCTCAAGAATCCAAG+AGG + Chr1:27890118-27890137 MsG0180001832.01.T01:intron 50.0%
CTACTGATGCACCCAAGCAA+CGG - Chr1:27886347-27886366 None:intergenic 50.0%
CTTCACAGGCCAACATGTCA+AGG - Chr1:27890505-27890524 None:intergenic 50.0%
GACTGCAATGCTGCTCTTTC+CGG + Chr1:27888588-27888607 MsG0180001832.01.T01:CDS 50.0%
GAGAACCTTAAGGGTCCGTT+TGG - Chr1:27887151-27887170 None:intergenic 50.0%
GGCATGCATTTGATGTGAGC+GGG - Chr1:27890801-27890820 None:intergenic 50.0%
GGCGGCAGATATATAGCAAG+AGG - Chr1:27888136-27888155 None:intergenic 50.0%
GGGAAGATGTGTTGGGAGTT+TGG + Chr1:27887598-27887617 MsG0180001832.01.T01:intron 50.0%
GGTTAACGGTTCAGAGAACC+AGG - Chr1:27890182-27890201 None:intergenic 50.0%
TAAGCCGTTCATGTTAGCCG+TGG + Chr1:27885511-27885530 MsG0180001832.01.T01:intron 50.0%
TAATAGCAGCAGCATGTCCC+TGG - Chr1:27893151-27893170 None:intergenic 50.0%
TATGTCGTGGGATGTCAGTC+GGG + Chr1:27890404-27890423 MsG0180001832.01.T01:intron 50.0%
TCAACAGAAGCCAAAGTCGC+AGG - Chr1:27888806-27888825 None:intergenic 50.0%
TCTTATCCTGCGCACCAAAC+AGG - Chr1:27886286-27886305 None:intergenic 50.0%
TGATAGACCGCAGCTCATGA+TGG + Chr1:27892167-27892186 MsG0180001832.01.T01:intron 50.0%
TGGAACATTCCAAGCATGCC+AGG - Chr1:27885634-27885653 None:intergenic 50.0%
TTGTGGCAAGGGTCAGATGA+TGG + Chr1:27889765-27889784 MsG0180001832.01.T01:CDS 50.0%
! CAGTTGCAGGCTCTGATGTT+AGG + Chr1:27892396-27892415 MsG0180001832.01.T01:CDS 50.0%
! CCCAAGCAACGGATTTAAGC+AGG - Chr1:27886336-27886355 None:intergenic 50.0%
! TCAGGTGGTAGTGCTGTAGT+GGG + Chr1:27887933-27887952 MsG0180001832.01.T01:intron 50.0%
! TCTGCAGCTTTTCATCCCGA+TGG + Chr1:27891803-27891822 MsG0180001832.01.T01:CDS 50.0%
! TGTGCCGATCAAAACAGGCA+AGG + Chr1:27885427-27885446 MsG0180001832.01.T01:CDS 50.0%
! TTCAGGTGGTAGTGCTGTAG+TGG + Chr1:27887932-27887951 MsG0180001832.01.T01:intron 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG - Chr1:27891055-27891074 None:intergenic 50.0%
!! CCATTAGCTTTGCCGATCCA+GGG + Chr1:27893131-27893150 MsG0180001832.01.T01:three_prime_UTR 50.0%
!! CCTTACAAGCCGGTTTTGCA+AGG + Chr1:27891057-27891076 MsG0180001832.01.T01:intron 50.0%
!! CCTTGCAAAACCGGCTTGTA+AGG - Chr1:27891060-27891079 None:intergenic 50.0%
!! TCCATTAGCTTTGCCGATCC+AGG + Chr1:27893130-27893149 MsG0180001832.01.T01:three_prime_UTR 50.0%
!!! CTCTCGCTTTTTCCTCTTCC+CGG - Chr1:27888610-27888629 None:intergenic 50.0%
ACGCACCAAACGGACCCTTA+AGG + Chr1:27887143-27887162 MsG0180001832.01.T01:intron 55.0%
AGAGCCTGCAACTGCAAGGT+AGG - Chr1:27892390-27892409 None:intergenic 55.0%
AGGAGGAATGAGGAAGTGGG+AGG - Chr1:27890203-27890222 None:intergenic 55.0%
AGTGAAGCCTAGACCAGTGC+AGG + Chr1:27885597-27885616 MsG0180001832.01.T01:CDS 55.0%
ATGCCAGTAAGAGAGGGGGA+TGG + Chr1:27887909-27887928 MsG0180001832.01.T01:intron 55.0%
ATGCTGCTCTTTCCGGGAAG+AGG + Chr1:27888595-27888614 MsG0180001832.01.T01:CDS 55.0%
CATCAGAGCCTGCAACTGCA+AGG - Chr1:27892394-27892413 None:intergenic 55.0%
CCCTGGATCGGCAAAGCTAA+TGG - Chr1:27893134-27893153 None:intergenic 55.0%
CGGGAAGAGGAAAAAGCGAG+AGG + Chr1:27888608-27888627 MsG0180001832.01.T01:CDS 55.0%
CGTTGCTTGGGTGCATCAGT+AGG + Chr1:27886345-27886364 MsG0180001832.01.T01:intron 55.0%
CTGCAAGGTAGGATCCACTG+TGG - Chr1:27892379-27892398 None:intergenic 55.0%
GAACCATCCCCCTCTCTTAC+TGG - Chr1:27887915-27887934 None:intergenic 55.0%
GCAAGCATTCCTGGCATGCT+TGG + Chr1:27885622-27885641 MsG0180001832.01.T01:CDS 55.0%
GCACTCCTCACCTTACAAGC+CGG + Chr1:27891047-27891066 MsG0180001832.01.T01:intron 55.0%
GCAGTGGAGTTTGACCACAG+TGG + Chr1:27892362-27892381 MsG0180001832.01.T01:intron 55.0%
GCTCCACTCCACATACACCA+TGG - Chr1:27893250-27893269 None:intergenic 55.0%
GGATCCTACCTTGCAGTTGC+AGG + Chr1:27892383-27892402 MsG0180001832.01.T01:CDS 55.0%
GGTGCGCAGGATAAGAAGAC+AGG + Chr1:27886290-27886309 MsG0180001832.01.T01:intron 55.0%
GTAAGAGAGGGGGATGGTTC+AGG + Chr1:27887915-27887934 MsG0180001832.01.T01:intron 55.0%
GTAAGCGGCTCTCCTGTAAC+TGG - Chr1:27885395-27885414 None:intergenic 55.0%
TACAGGAGAGCCGCTTACTC+TGG + Chr1:27885397-27885416 MsG0180001832.01.T01:CDS 55.0%
! AGCTGCTGATGACGAGGAGT+TGG + Chr1:27888506-27888525 MsG0180001832.01.T01:intron 55.0%
! CTGCATCACTTGATGGCAGC+TGG + Chr1:27891494-27891513 MsG0180001832.01.T01:CDS 55.0%
! GCAGGCTCTGATGTTAGGTG+AGG + Chr1:27892401-27892420 MsG0180001832.01.T01:intron 55.0%
AGAGAGGGGGATGGTTCAGG+TGG + Chr1:27887918-27887937 MsG0180001832.01.T01:intron 60.0%
CTGCTTGCCGCGTGATTGCA+AGG + Chr1:27888193-27888212 MsG0180001832.01.T01:CDS 60.0%
GCAGCAGCATGTCCCTGGAT+CGG - Chr1:27893146-27893165 None:intergenic 60.0%
GTGCAGGCAGCAAGCATTCC+TGG + Chr1:27885613-27885632 MsG0180001832.01.T01:CDS 60.0%
! CTTGCTGCCTGCACTGGTCT+AGG - Chr1:27885607-27885626 None:intergenic 60.0%
! GGAATGCTTGCTGCCTGCAC+TGG - Chr1:27885613-27885632 None:intergenic 60.0%
! TGGGAGTTTGGGGTGCACCT+TGG + Chr1:27887610-27887629 MsG0180001832.01.T01:intron 60.0%
!! TTACGGCCTGTTTGGTGCGC+AGG + Chr1:27886277-27886296 MsG0180001832.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 27885001 27893460 27885001 ID=MsG0180001832.01;Name=MsG0180001832.01
Chr1 mRNA 27885001 27893460 27885001 ID=MsG0180001832.01.T01;Parent=MsG0180001832.01;Name=MsG0180001832.01.T01;_AED=0.42;_eAED=0.44;_QI=0|0.73|0.81|1|0.93|0.87|16|467|422
Chr1 exon 27885001 27885021 27885001 ID=MsG0180001832.01.T01:exon:41583;Parent=MsG0180001832.01.T01
Chr1 exon 27885377 27885448 27885377 ID=MsG0180001832.01.T01:exon:41584;Parent=MsG0180001832.01.T01
Chr1 exon 27885595 27885657 27885595 ID=MsG0180001832.01.T01:exon:41585;Parent=MsG0180001832.01.T01
Chr1 exon 27885878 27885964 27885878 ID=MsG0180001832.01.T01:exon:41586;Parent=MsG0180001832.01.T01
Chr1 exon 27888186 27888333 27888186 ID=MsG0180001832.01.T01:exon:41587;Parent=MsG0180001832.01.T01
Chr1 exon 27888508 27888629 27888508 ID=MsG0180001832.01.T01:exon:41588;Parent=MsG0180001832.01.T01
Chr1 exon 27889105 27889200 27889105 ID=MsG0180001832.01.T01:exon:41589;Parent=MsG0180001832.01.T01
Chr1 exon 27889280 27889339 27889280 ID=MsG0180001832.01.T01:exon:41590;Parent=MsG0180001832.01.T01
Chr1 exon 27889756 27889905 27889756 ID=MsG0180001832.01.T01:exon:41591;Parent=MsG0180001832.01.T01
Chr1 exon 27891451 27891515 27891451 ID=MsG0180001832.01.T01:exon:41592;Parent=MsG0180001832.01.T01
Chr1 exon 27891776 27891878 27891776 ID=MsG0180001832.01.T01:exon:41593;Parent=MsG0180001832.01.T01
Chr1 exon 27891979 27892056 27891979 ID=MsG0180001832.01.T01:exon:41594;Parent=MsG0180001832.01.T01
Chr1 exon 27892173 27892269 27892173 ID=MsG0180001832.01.T01:exon:41595;Parent=MsG0180001832.01.T01
Chr1 exon 27892366 27892417 27892366 ID=MsG0180001832.01.T01:exon:41596;Parent=MsG0180001832.01.T01
Chr1 exon 27892827 27892895 27892827 ID=MsG0180001832.01.T01:exon:41597;Parent=MsG0180001832.01.T01
Chr1 exon 27893008 27893460 27893008 ID=MsG0180001832.01.T01:exon:41598;Parent=MsG0180001832.01.T01
Chr1 CDS 27885001 27885021 27885001 ID=MsG0180001832.01.T01:cds;Parent=MsG0180001832.01.T01
Chr1 CDS 27885377 27885448 27885377 ID=MsG0180001832.01.T01:cds;Parent=MsG0180001832.01.T01
Chr1 CDS 27885595 27885657 27885595 ID=MsG0180001832.01.T01:cds;Parent=MsG0180001832.01.T01
Chr1 CDS 27885878 27885964 27885878 ID=MsG0180001832.01.T01:cds;Parent=MsG0180001832.01.T01
Chr1 CDS 27888186 27888333 27888186 ID=MsG0180001832.01.T01:cds;Parent=MsG0180001832.01.T01
Chr1 CDS 27888508 27888629 27888508 ID=MsG0180001832.01.T01:cds;Parent=MsG0180001832.01.T01
Chr1 CDS 27889105 27889200 27889105 ID=MsG0180001832.01.T01:cds;Parent=MsG0180001832.01.T01
Chr1 CDS 27889280 27889339 27889280 ID=MsG0180001832.01.T01:cds;Parent=MsG0180001832.01.T01
Chr1 CDS 27889756 27889905 27889756 ID=MsG0180001832.01.T01:cds;Parent=MsG0180001832.01.T01
Chr1 CDS 27891451 27891515 27891451 ID=MsG0180001832.01.T01:cds;Parent=MsG0180001832.01.T01
Chr1 CDS 27891776 27891878 27891776 ID=MsG0180001832.01.T01:cds;Parent=MsG0180001832.01.T01
Chr1 CDS 27891979 27892056 27891979 ID=MsG0180001832.01.T01:cds;Parent=MsG0180001832.01.T01
Chr1 CDS 27892173 27892269 27892173 ID=MsG0180001832.01.T01:cds;Parent=MsG0180001832.01.T01
Chr1 CDS 27892366 27892417 27892366 ID=MsG0180001832.01.T01:cds;Parent=MsG0180001832.01.T01
Chr1 CDS 27892827 27892881 27892827 ID=MsG0180001832.01.T01:cds;Parent=MsG0180001832.01.T01
Chr1 three_prime_UTR 27892882 27892895 27892882 ID=MsG0180001832.01.T01:three_prime_utr;Parent=MsG0180001832.01.T01
Chr1 three_prime_UTR 27893008 27893460 27893008 ID=MsG0180001832.01.T01:three_prime_utr;Parent=MsG0180001832.01.T01
Gene Sequence

>MsG0180001832.01.T01

ATGTTTATGTCCTATCTATCGGATTTTGGGAAGTGTCCAGTTACAGGAGAGCCGCTTACTCTGGATGATATTGTGCCGATCAAAACAGGCAAGATAGTGAAGCCTAGACCAGTGCAGGCAGCAAGCATTCCTGGCATGCTTGGAATGTTCCAAAATGAATGGGATGGGTTGATGCTATCTAATTTTGCATTGGAGCAGCAGTTGCATACAGCAAGGCAAGAGTTAAGTCATGCTCTATACCAGCATGATGCTGCTTGCCGCGTGATTGCAAGGCTTAAAAAGGAACGAGACGAAGCTAGGTCTATACTTGCACAGGCAGAAAGGCAGTTCCCTATTTCTACTCCAAATTCTGTGACAGCTAATGCTCCTGTTCATAGCAATGGGAAAAGAGCTGCTGATGACGAGGAGTTGGCACCTAATGCGAAGAAATTACATCCTGGAATATCTTCCAGTATAATTTCTGAGCTAACAGACTGCAATGCTGCTCTTTCCGGGAAGAGGAAAAAGCGAGAGGACATAATCGCAACTGGAAATATTGATACAAATGCTGTTATTTTTGACCGTCCATCAGGACAAGTATTAGCTACACTCAGCGGTCACTCTAAAAAGGTAACAAGCGTGAAGTTTGTAGGTCAGGGTGAATCTATCATAACTGGTTCAGCAGATAAGACAGTTCGTTTGTGGCAAGGGTCAGATGATGGTCACTATAACTGCAAACAGATCTTGAAGGATCATTCTGCTGAAGTAAGTGAATCTAACCACATTGCTGTTCCTAATTTTTCATTGTTTCTTGTTTGTGTTTATCCTACTTGTAATTCGGTGGAAGCTGTCACTGTCCATGCCACCAATAATTACTTTGTGACTGCATCACTTGATGGCAGCTGGTTTCTGACTCTTCCGAAGGCTATACATCTGCAGCTTTTCATCCCGATGGTCTTATTCTTGGAAACAGATTCTCTTGTTAAGATCTGGGATGTAAAAAGTCAGGCAAATGTTGCTAAGTTTGATGGACATGTTGGGCATGTAACTGCAATATCCTTTTCTGAGAATGGATATTACCTTGCGACCGCAGCTCATGATGGTGTAAAGCTTTGGGATCTACGCAAGTTGAAAAACTTCCGGGACTATGGCCCATATGACTCAGCAACTCCAACAAACTCTGTGGAGTTTGACCACAGTGGATCCTACCTTGCAGTTGCAGGCTCTGATGTTAGGATATTACAAGTTGCAAATGTGAAATCTGAATGGAACTTGATCAAACTCTCCTGA
Protein sequence

>MsG0180001832.01.T01

MFMSYLSDFGKCPVTGEPLTLDDIVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSILAQAERQFPISTPNSVTANAPVHSNGKRAADDEELAPNAKKLHPGISSSIISELTDCNAALSGKRKKREDIIATGNIDTNAVIFDRPSGQVLATLSGHSKKVTSVKFVGQGESIITGSADKTVRLWQGSDDGHYNCKQILKDHSAEVSESNHIAVPNFSLFLVCVYPTCNSVEAVTVHATNNYFVTASLDGSWFLTLPKAIHLQLFIPMVLFLETDSLVKIWDVKSQANVAKFDGHVGHVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRDYGPYDSATPTNSVEFDHSGSYLAVAGSDVRILQVANVKSEWNLIKLS*