AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009792.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009792.01.T01 MTR_2g071720 77.059 170 23 1 155 308 1 170 3.91e-90 266
MsG0280009792.01.T01 MTR_6g034190 61.047 172 58 1 146 308 329 500 2.69e-68 221
MsG0280009792.01.T01 MTR_6g034190 47.586 145 71 2 1 145 1 140 1.43e-30 120
MsG0280009792.01.T01 MTR_2g071700 81.633 147 20 1 1 147 1 140 2.36e-67 214
MsG0280009792.01.T01 MTR_2g070660 70.345 145 6 2 1 145 1 108 3.89e-57 182
MsG0280009792.01.T01 MTR_2g070780 58.282 163 52 3 1 163 1 147 2.34e-48 165
MsG0280009792.01.T01 MTR_2g072240 68.627 102 32 0 205 306 334 435 4.37e-45 159
MsG0280009792.01.T01 MTR_2g072240 38.009 221 102 7 12 205 5 217 3.17e-31 122
MsG0280009792.01.T01 MTR_2g070820 82.143 56 10 0 144 199 56 111 1.80e-25 99.0
MsG0280009792.01.T01 MTR_2g070810 72.917 48 12 1 1 48 49 95 5.80e-14 67.0
MsG0280009792.01.T01 MTR_7g098590 46.875 64 34 0 1 64 1 64 5.65e-13 65.5
MsG0280009792.01.T01 MTR_2g082860 57.143 49 21 0 18 66 27 75 1.56e-11 61.2
MsG0280009792.01.T01 MTR_7g098510 47.619 63 33 0 1 63 1 63 3.03e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 65 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAAATATTCCTCATTTCT+AGG 0.187885 2:+58138466 None:intergenic
CTTACCCCATAAGTTTGTTT+TGG 0.235274 2:-58136910 MsG0280009792.01.T01:CDS
TTCAAATCAATTGACAATTT+AGG 0.238343 2:+58136677 None:intergenic
AAGACTTCAACATTTGTATT+TGG 0.241915 2:+58138805 None:intergenic
CCCAAAGTCTGTTTGTATAA+AGG 0.251374 2:-58136852 MsG0280009792.01.T01:CDS
GTTAAGTACTTAGTATTAAA+TGG 0.281525 2:-58136797 MsG0280009792.01.T01:CDS
TTTGAGCCAAAACAAACTTA+TGG 0.285224 2:+58136904 None:intergenic
GAGAAATATATTTAAACATT+TGG 0.309190 2:-58137336 MsG0280009792.01.T01:CDS
CCAAAGTCTGTTTGTATAAA+GGG 0.312534 2:-58136851 MsG0280009792.01.T01:CDS
CCCTTTATACAAACAGACTT+TGG 0.315234 2:+58136851 None:intergenic
TTGAGCCAAAACAAACTTAT+GGG 0.331764 2:+58136905 None:intergenic
TGCAAGTGCGGATGGTATTC+TGG 0.335437 2:-58138347 MsG0280009792.01.T01:intron
GAGCGCAAGGTAATTTGTTA+TGG 0.343861 2:-58138726 MsG0280009792.01.T01:CDS
TGACCGCCTTACAATGGTTA+TGG 0.344537 2:-58138748 MsG0280009792.01.T01:CDS
TCTTAGGGTCATCGAGGTTC+AGG 0.358731 2:-58137362 MsG0280009792.01.T01:intron
GACAATTTAGGAGAGAGTTT+TGG 0.359150 2:+58136689 None:intergenic
TCAAATATTGACAGTCATAT+TGG 0.380435 2:-58138412 MsG0280009792.01.T01:CDS
CCTTTATACAAACAGACTTT+GGG 0.390219 2:+58136852 None:intergenic
TTGTCAATTGATTTGAAACC+TGG 0.390272 2:-58136671 MsG0280009792.01.T01:CDS
GTTCTAACAACTTCCATGTA+TGG 0.423464 2:+58138888 None:intergenic
AGTATTAAATGGCGGAGTTA+TGG 0.423482 2:-58136786 MsG0280009792.01.T01:CDS
TTATGGATAATATTACCATT+TGG 0.432439 2:-58136769 MsG0280009792.01.T01:CDS
CATTTATCTACTTCCATACA+TGG 0.442977 2:-58138901 MsG0280009792.01.T01:CDS
ATTTGAAGATTCATTAATTG+TGG 0.450139 2:+58137239 None:intergenic
TCGAATGGTACAACTCTTCA+AGG 0.460907 2:+58138387 None:intergenic
AAAAGTGAAAGTGGCAGAGG+AGG 0.481008 2:-58138973 MsG0280009792.01.T01:CDS
CTGTACCAACTGCATGTTTG+CGG 0.483179 2:-58136718 MsG0280009792.01.T01:CDS
TTTGAAGATTCATTAATTGT+GGG 0.487413 2:+58137240 None:intergenic
ATAGAACCTAAAAGTGCATC+GGG 0.490050 2:+58138924 None:intergenic
GGTGTGGTAGCTTTGATGAA+TGG 0.494341 2:-58136626 MsG0280009792.01.T01:CDS
CAAAACAAACTTATGGGGTA+AGG 0.495683 2:+58136911 None:intergenic
CCACAATGTCTCCCATCGCT+TGG 0.508796 2:+58138854 None:intergenic
TGCGCTCCATAACCATTGTA+AGG 0.509774 2:+58138742 None:intergenic
GTGTGGTAGCTTTGATGAAT+GGG 0.515371 2:-58136625 MsG0280009792.01.T01:CDS
TCCGCACTTGCATAACTCTC+AGG 0.523052 2:+58138358 None:intergenic
CAAGTGTGCTTTCCAAGCGA+TGG 0.528071 2:-58138866 MsG0280009792.01.T01:CDS
TACAAACAGACTTTGGGTTG+CGG 0.532904 2:+58136858 None:intergenic
GCCGAGTATATACAAAAGAA+TGG 0.545486 2:-58136647 MsG0280009792.01.T01:CDS
GATAGAACCTAAAAGTGCAT+CGG 0.548856 2:+58138923 None:intergenic
AATATTTGATGTAATCATCA+AGG 0.552019 2:+58138426 None:intergenic
TGTCAATTGATTTGAAACCT+GGG 0.558987 2:-58136670 MsG0280009792.01.T01:CDS
CCAAGCGATGGGAGACATTG+TGG 0.566970 2:-58138854 MsG0280009792.01.T01:CDS
AAGTGTGCTTTCCAAGCGAT+GGG 0.578750 2:-58138865 MsG0280009792.01.T01:CDS
ATTGTAAGGCGGTCAACAAG+TGG 0.580770 2:+58138756 None:intergenic
GAGAGTTATGCAAGTGCGGA+TGG 0.583499 2:-58138355 MsG0280009792.01.T01:CDS
GTCAATTGATTTGAAACCTG+GGG 0.585160 2:-58136669 MsG0280009792.01.T01:CDS
ACTTGTTGACCGCCTTACAA+TGG 0.585178 2:-58138754 MsG0280009792.01.T01:CDS
TGAGCCAAAACAAACTTATG+GGG 0.588293 2:+58136906 None:intergenic
TACAATGGTTATGGAGCGCA+AGG 0.588317 2:-58138739 MsG0280009792.01.T01:CDS
TACTGTTTAATTCAAAGTCG+AGG 0.590219 2:+58137303 None:intergenic
GAGTGCAAAAGAAAGAGCTA+TGG 0.595456 2:+58137271 None:intergenic
ACAGGTAGCTCCTAGAAATG+AGG 0.598289 2:-58138476 MsG0280009792.01.T01:intron
GAATCTTCAAATAAATAACC+AGG 0.602091 2:-58137228 MsG0280009792.01.T01:intron
GTTTGTATAAAGGGATACAA+TGG 0.615146 2:-58136842 MsG0280009792.01.T01:CDS
ACTCTCAGGCAAGTGTCGAA+TGG 0.625810 2:+58138372 None:intergenic
TGTATAAAGGGATACAATGG+TGG 0.627410 2:-58136839 MsG0280009792.01.T01:CDS
TATGACCGCAAACATGCAGT+TGG 0.629676 2:+58136713 None:intergenic
GAACACGAAAGAATGAGTGA+AGG 0.630535 2:-58139005 None:intergenic
CGAATGGTACAACTCTTCAA+GGG 0.641099 2:+58138388 None:intergenic
TTGCGGCTAACACACATACA+CGG 0.662587 2:+58136875 None:intergenic
GCCTGAGAGTTATGCAAGTG+CGG 0.670396 2:-58138359 MsG0280009792.01.T01:CDS
GTATATACAAAAGAATGGTG+TGG 0.676742 2:-58136642 MsG0280009792.01.T01:CDS
TGATTGTCTTAGGGTCATCG+AGG 0.689894 2:-58137368 MsG0280009792.01.T01:intron
AAGTACTTAGTATTAAATGG+CGG 0.690460 2:-58136794 MsG0280009792.01.T01:CDS
GCTCCATAACCATTGTAAGG+CGG 0.743889 2:+58138745 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGATAGTTATTAAAAA+AGG + Chr2:58138227-58138246 None:intergenic 10.0%
!! AAAAGATAGTTATTAAAAAA+GGG + Chr2:58138226-58138245 None:intergenic 10.0%
!! ATTAATTTATAGTTATATCA+TGG + Chr2:58138581-58138600 None:intergenic 10.0%
!!! ATGATTTATGTTTTAATTTA+CGG - Chr2:58136945-58136964 MsG0280009792.01.T01:CDS 10.0%
!! AACCGATAAATATATATAAA+CGG - Chr2:58137954-58137973 MsG0280009792.01.T01:intron 15.0%
!! AACCGTTTATATATATTTAT+CGG + Chr2:58137959-58137978 None:intergenic 15.0%
!! GAATAATTAGATTAATCAAA+TGG - Chr2:58136973-58136992 MsG0280009792.01.T01:intron 15.0%
!! GAGAAATATATTTAAACATT+TGG - Chr2:58138279-58138298 MsG0280009792.01.T01:intron 15.0%
!!! AATTTTATTTCTCAAAAGAT+TGG - Chr2:58138124-58138143 MsG0280009792.01.T01:intron 15.0%
!!! CAATTATTCAAGTTTTAAAA+TGG - Chr2:58138470-58138489 MsG0280009792.01.T01:CDS 15.0%
!!! TTGATTAAACTTTTTGTTTA+TGG - Chr2:58137673-58137692 MsG0280009792.01.T01:intron 15.0%
!!! TTTACATGACATTTTTTTTA+AGG + Chr2:58137830-58137849 None:intergenic 15.0%
!! AATATTTGATGTAATCATCA+AGG + Chr2:58137192-58137211 None:intergenic 20.0%
!! ATAACATAGCTTATTATATG+TGG - Chr2:58137627-58137646 MsG0280009792.01.T01:intron 20.0%
!! ATTTGAAGATTCATTAATTG+TGG + Chr2:58138379-58138398 None:intergenic 20.0%
!! CATTCATTTCATTCAAAAAA+TGG + Chr2:58137063-58137082 None:intergenic 20.0%
!! GTTAAGTACTTAGTATTAAA+TGG - Chr2:58138818-58138837 MsG0280009792.01.T01:CDS 20.0%
!! TATATGTACAACTTAACATA+TGG - Chr2:58137437-58137456 MsG0280009792.01.T01:intron 20.0%
!! TTATGGATAATATTACCATT+TGG - Chr2:58138846-58138865 MsG0280009792.01.T01:CDS 20.0%
!! TTCAAATCAATTGACAATTT+AGG + Chr2:58138941-58138960 None:intergenic 20.0%
!! TTTGAAGATTCATTAATTGT+GGG + Chr2:58138378-58138397 None:intergenic 20.0%
!!! ATAAGCTATGTTATTTTTCT+AGG + Chr2:58137621-58137640 None:intergenic 20.0%
!!! ATTTATGTCAATTTGTTGTA+TGG - Chr2:58138028-58138047 MsG0280009792.01.T01:intron 20.0%
!!! TAAGCTATGTTATTTTTCTA+GGG + Chr2:58137620-58137639 None:intergenic 20.0%
!!! TAATATTACCATTTGGTTTT+TGG - Chr2:58138853-58138872 MsG0280009792.01.T01:CDS 20.0%
!!! TATCTTTTTTGATTGTCTTA+GGG - Chr2:58138238-58138257 MsG0280009792.01.T01:intron 20.0%
!!! TTTATGTCAATTTGTTGTAT+GGG - Chr2:58138029-58138048 MsG0280009792.01.T01:intron 20.0%
! AAGACTTCAACATTTGTATT+TGG + Chr2:58136813-58136832 None:intergenic 25.0%
! AAGTACTTAGTATTAAATGG+CGG - Chr2:58138821-58138840 MsG0280009792.01.T01:CDS 25.0%
! ACTAATTGAGTAATTGTGAT+GGG - Chr2:58137650-58137669 MsG0280009792.01.T01:intron 25.0%
! AGAACATAAAAAAGTGAAAG+TGG - Chr2:58136633-58136652 MsG0280009792.01.T01:CDS 25.0%
! ATAGCAATGTTACATTATGA+GGG + Chr2:58137997-58138016 None:intergenic 25.0%
! CAAAAGTGGAAATTATGTAT+TGG - Chr2:58138092-58138111 MsG0280009792.01.T01:intron 25.0%
! CATTTCTTTGTAGTTAATAG+AGG - Chr2:58137369-58137388 MsG0280009792.01.T01:intron 25.0%
! CCAAAAATTAGAACATTAGA+TGG + Chr2:58137396-58137415 None:intergenic 25.0%
! GAAAGATAGTTGCAAATATA+TGG + Chr2:58138433-58138452 None:intergenic 25.0%
! GAATCTTCAAATAAATAACC+AGG - Chr2:58138387-58138406 MsG0280009792.01.T01:CDS 25.0%
! TATAGCAATGTTACATTATG+AGG + Chr2:58137998-58138017 None:intergenic 25.0%
! TCAAAATATTCCTCATTTCT+AGG + Chr2:58137152-58137171 None:intergenic 25.0%
! TCAAATATTGACAGTCATAT+TGG - Chr2:58137203-58137222 MsG0280009792.01.T01:intron 25.0%
! TCACAAAAAATCACACTTAT+CGG - Chr2:58137586-58137605 MsG0280009792.01.T01:intron 25.0%
! TGAGATATGATACATATTGA+TGG - Chr2:58137104-58137123 MsG0280009792.01.T01:intron 25.0%
! TTTAAGGAGCAAAATCAAAT+TGG + Chr2:58137814-58137833 None:intergenic 25.0%
!! ACCATTCTTTTGTATATACT+CGG + Chr2:58138972-58138991 None:intergenic 25.0%
!! ATGGTATCTATTTTATGCTT+AGG - Chr2:58137692-58137711 MsG0280009792.01.T01:intron 25.0%
!! CAATACATAATTTCCACTTT+TGG + Chr2:58138094-58138113 None:intergenic 25.0%
!! CCATCTAATGTTCTAATTTT+TGG - Chr2:58137393-58137412 MsG0280009792.01.T01:intron 25.0%
!! TGGTATCTATTTTATGCTTA+GGG - Chr2:58137693-58137712 MsG0280009792.01.T01:intron 25.0%
!!! ATTTTTTGTGATGTCTCAAA+AGG + Chr2:58137577-58137596 None:intergenic 25.0%
!!! CTATCTTTTTTGATTGTCTT+AGG - Chr2:58138237-58138256 MsG0280009792.01.T01:intron 25.0%
!!! TGAATGAATTTTAATCCCAA+AGG - Chr2:58137077-58137096 MsG0280009792.01.T01:intron 25.0%
!!! TTTTTTGTGATGTCTCAAAA+GGG + Chr2:58137576-58137595 None:intergenic 25.0%
AATAAATAACCAGGTATGCT+TGG - Chr2:58138396-58138415 MsG0280009792.01.T01:CDS 30.0%
AATTGAACACATGTAACTGA+AGG + Chr2:58138455-58138474 None:intergenic 30.0%
ATAAATAACCAGGTATGCTT+GGG - Chr2:58138397-58138416 MsG0280009792.01.T01:CDS 30.0%
ATCATATCTCAAATGCCTTT+GGG + Chr2:58137095-58137114 None:intergenic 30.0%
CACAAAAAATCACACTTATC+GGG - Chr2:58137587-58137606 MsG0280009792.01.T01:intron 30.0%
CATTTATCTACTTCCATACA+TGG - Chr2:58136714-58136733 MsG0280009792.01.T01:CDS 30.0%
CCAAAGTCTGTTTGTATAAA+GGG - Chr2:58138764-58138783 MsG0280009792.01.T01:CDS 30.0%
CCTTTATACAAACAGACTTT+GGG + Chr2:58138766-58138785 None:intergenic 30.0%
GACTAATTGAGTAATTGTGA+TGG - Chr2:58137649-58137668 MsG0280009792.01.T01:intron 30.0%
GTATATACAAAAGAATGGTG+TGG - Chr2:58138973-58138992 MsG0280009792.01.T01:CDS 30.0%
GTTTGTATAAAGGGATACAA+TGG - Chr2:58138773-58138792 MsG0280009792.01.T01:CDS 30.0%
TAAGCCATATTAGCAGTATA+GGG + Chr2:58137779-58137798 None:intergenic 30.0%
TAATGTTAACATGTGCTCTT+AGG - Chr2:58138052-58138071 MsG0280009792.01.T01:intron 30.0%
TACTGTTTAATTCAAAGTCG+AGG + Chr2:58138315-58138334 None:intergenic 30.0%
TATCATATCTCAAATGCCTT+TGG + Chr2:58137096-58137115 None:intergenic 30.0%
TTGAGCCAAAACAAACTTAT+GGG + Chr2:58138713-58138732 None:intergenic 30.0%
TTTGAGCCAAAACAAACTTA+TGG + Chr2:58138714-58138733 None:intergenic 30.0%
!! TGTCAATTGATTTGAAACCT+GGG - Chr2:58138945-58138964 MsG0280009792.01.T01:CDS 30.0%
!! TTGTCAATTGATTTGAAACC+TGG - Chr2:58138944-58138963 MsG0280009792.01.T01:CDS 30.0%
!!! AAGTTTGTTTTGGCTCAAAA+GGG - Chr2:58138715-58138734 MsG0280009792.01.T01:intron 30.0%
!!! CATTTTTTCCCTTATACTCT+AGG - Chr2:58138640-58138659 MsG0280009792.01.T01:intron 30.0%
!!! TAAGTTTGTTTTGGCTCAAA+AGG - Chr2:58138714-58138733 MsG0280009792.01.T01:intron 30.0%
AAATTAATCCCAAGCATACC+TGG + Chr2:58138408-58138427 None:intergenic 35.0%
AACCTTGACCTAGAGTATAA+GGG + Chr2:58138651-58138670 None:intergenic 35.0%
ATGGTGTGTAAGATGAATTG+TGG - Chr2:58138489-58138508 MsG0280009792.01.T01:intron 35.0%
CAAAACAAACTTATGGGGTA+AGG + Chr2:58138707-58138726 None:intergenic 35.0%
CCCAAAGTCTGTTTGTATAA+AGG - Chr2:58138763-58138782 MsG0280009792.01.T01:CDS 35.0%
CCCTTTATACAAACAGACTT+TGG + Chr2:58138767-58138786 None:intergenic 35.0%
CTAAGCCATATTAGCAGTAT+AGG + Chr2:58137780-58137799 None:intergenic 35.0%
GCATTCATCCAAAAACCAAA+TGG + Chr2:58138864-58138883 None:intergenic 35.0%
GCCGAGTATATACAAAAGAA+TGG - Chr2:58138968-58138987 MsG0280009792.01.T01:CDS 35.0%
GTTCTAACAACTTCCATGTA+TGG + Chr2:58136730-58136749 None:intergenic 35.0%
TAAAAAAGTGAAAGTGGCAG+AGG - Chr2:58136639-58136658 MsG0280009792.01.T01:CDS 35.0%
TATGTTAAGGATGCCAAAAG+TGG - Chr2:58138078-58138097 MsG0280009792.01.T01:intron 35.0%
TGAGCCAAAACAAACTTATG+GGG + Chr2:58138712-58138731 None:intergenic 35.0%
TGCTCTTAGGACATATGTTA+AGG - Chr2:58138065-58138084 MsG0280009792.01.T01:intron 35.0%
TGTATAAAGGGATACAATGG+TGG - Chr2:58138776-58138795 MsG0280009792.01.T01:CDS 35.0%
TTTGTTACTATTCGGTAAGG+TGG + Chr2:58137751-58137770 None:intergenic 35.0%
! AGTATTAAATGGCGGAGTTA+TGG - Chr2:58138829-58138848 MsG0280009792.01.T01:CDS 35.0%
! ATAGAACCTAAAAGTGCATC+GGG + Chr2:58136694-58136713 None:intergenic 35.0%
! GACAATTTAGGAGAGAGTTT+TGG + Chr2:58138929-58138948 None:intergenic 35.0%
! GATAGAACCTAAAAGTGCAT+CGG + Chr2:58136695-58136714 None:intergenic 35.0%
! GCTTTTGTTACTATTCGGTA+AGG + Chr2:58137754-58137773 None:intergenic 35.0%
! GGGAAGCTTTTGTTACTATT+CGG + Chr2:58137759-58137778 None:intergenic 35.0%
!! CTTACCCCATAAGTTTGTTT+TGG - Chr2:58138705-58138724 MsG0280009792.01.T01:intron 35.0%
!! GTCAATTGATTTGAAACCTG+GGG - Chr2:58138946-58138965 MsG0280009792.01.T01:CDS 35.0%
!! GTTTTTGGATGAATGCTCAT+GGG - Chr2:58138868-58138887 MsG0280009792.01.T01:CDS 35.0%
AGATGCAAACAAGTGAGTCA+AGG - Chr2:58137509-58137528 MsG0280009792.01.T01:intron 40.0%
ATTCTTGACATGTGCCATGA+AGG - Chr2:58138185-58138204 MsG0280009792.01.T01:intron 40.0%
CAACCTTGACCTAGAGTATA+AGG + Chr2:58138652-58138671 None:intergenic 40.0%
CATGCTTATATGTGCCTTCA+TGG + Chr2:58138202-58138221 None:intergenic 40.0%
CGAATGGTACAACTCTTCAA+GGG + Chr2:58137230-58137249 None:intergenic 40.0%
GACTCACTTGTTTGCATCTA+CGG + Chr2:58137508-58137527 None:intergenic 40.0%
GAGTGCAAAAGAAAGAGCTA+TGG + Chr2:58138347-58138366 None:intergenic 40.0%
GCTTCCCTATACTGCTAATA+TGG - Chr2:58137772-58137791 MsG0280009792.01.T01:intron 40.0%
GTGTGTAAGATGAATTGTGG+TGG - Chr2:58138492-58138511 MsG0280009792.01.T01:intron 40.0%
TCGAATGGTACAACTCTTCA+AGG + Chr2:58137231-58137250 None:intergenic 40.0%
TGATGGAATTCATGCATGAC+AGG - Chr2:58137121-58137140 MsG0280009792.01.T01:intron 40.0%
TTCCCTTATACTCTAGGTCA+AGG - Chr2:58138646-58138665 MsG0280009792.01.T01:intron 40.0%
! AATCTTCCCGATGCACTTTT+AGG - Chr2:58136685-58136704 MsG0280009792.01.T01:CDS 40.0%
! TAAGGTGGTGATGACATACT+TGG + Chr2:58137736-58137755 None:intergenic 40.0%
!! GAGCGCAAGGTAATTTGTTA+TGG - Chr2:58136889-58136908 MsG0280009792.01.T01:CDS 40.0%
!! GGTTTTTGGATGAATGCTCA+TGG - Chr2:58138867-58138886 MsG0280009792.01.T01:CDS 40.0%
!! GTGTGGTAGCTTTGATGAAT+GGG - Chr2:58138990-58139009 MsG0280009792.01.T01:CDS 40.0%
!! TACAAACAGACTTTGGGTTG+CGG + Chr2:58138760-58138779 None:intergenic 40.0%
AAAAGTGAAAGTGGCAGAGG+AGG - Chr2:58136642-58136661 MsG0280009792.01.T01:CDS 45.0%
AAGTGTGCTTTCCAAGCGAT+GGG - Chr2:58136750-58136769 MsG0280009792.01.T01:CDS 45.0%
ACAGGTAGCTCCTAGAAATG+AGG - Chr2:58137139-58137158 MsG0280009792.01.T01:intron 45.0%
ATTGTAAGGCGGTCAACAAG+TGG + Chr2:58136862-58136881 None:intergenic 45.0%
CTGTACCAACTGCATGTTTG+CGG - Chr2:58138897-58138916 MsG0280009792.01.T01:CDS 45.0%
GCTCCATAACCATTGTAAGG+CGG + Chr2:58136873-58136892 None:intergenic 45.0%
TACAATGGTTATGGAGCGCA+AGG - Chr2:58136876-58136895 MsG0280009792.01.T01:CDS 45.0%
TATGACCGCAAACATGCAGT+TGG + Chr2:58138905-58138924 None:intergenic 45.0%
TGACCGCCTTACAATGGTTA+TGG - Chr2:58136867-58136886 MsG0280009792.01.T01:CDS 45.0%
TGATTGTCTTAGGGTCATCG+AGG - Chr2:58138247-58138266 MsG0280009792.01.T01:intron 45.0%
TGCGCTCCATAACCATTGTA+AGG + Chr2:58136876-58136895 None:intergenic 45.0%
TTGCGGCTAACACACATACA+CGG + Chr2:58138743-58138762 None:intergenic 45.0%
! ACTTGTTGACCGCCTTACAA+TGG - Chr2:58136861-58136880 MsG0280009792.01.T01:CDS 45.0%
! TTTTGTATATACTCGGCCCC+AGG + Chr2:58138965-58138984 None:intergenic 45.0%
!! GGTGTGGTAGCTTTGATGAA+TGG - Chr2:58138989-58139008 MsG0280009792.01.T01:CDS 45.0%
AGATTCTCTACAGCCCTTGC+TGG + Chr2:58137022-58137041 None:intergenic 50.0%
CAAGTGTGCTTTCCAAGCGA+TGG - Chr2:58136749-58136768 MsG0280009792.01.T01:CDS 50.0%
CATGAAGAGTCAGCCAGCAA+GGG - Chr2:58137006-58137025 MsG0280009792.01.T01:intron 50.0%
GAGAGTTATGCAAGTGCGGA+TGG - Chr2:58137260-58137279 MsG0280009792.01.T01:CDS 50.0%
GCCTGAGAGTTATGCAAGTG+CGG - Chr2:58137256-58137275 MsG0280009792.01.T01:CDS 50.0%
TCATGAAGAGTCAGCCAGCA+AGG - Chr2:58137005-58137024 MsG0280009792.01.T01:intron 50.0%
TCCGCACTTGCATAACTCTC+AGG + Chr2:58137260-58137279 None:intergenic 50.0%
TCTTAGGGTCATCGAGGTTC+AGG - Chr2:58138253-58138272 MsG0280009792.01.T01:intron 50.0%
TGCAAGTGCGGATGGTATTC+TGG - Chr2:58137268-58137287 MsG0280009792.01.T01:CDS 50.0%
!! ACTCTCAGGCAAGTGTCGAA+TGG + Chr2:58137246-58137265 None:intergenic 50.0%
CCAAGCGATGGGAGACATTG+TGG - Chr2:58136761-58136780 MsG0280009792.01.T01:CDS 55.0%
CCACAATGTCTCCCATCGCT+TGG + Chr2:58136764-58136783 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr2 gene 58136622 58139015 58136622 ID=MsG0280009792.01;Name=MsG0280009792.01
Chr2 mRNA 58136622 58139015 58136622 ID=MsG0280009792.01.T01;Parent=MsG0280009792.01;Name=MsG0280009792.01.T01;_AED=0.32;_eAED=0.34;_QI=0|0|0|1|0.66|0.75|4|0|315
Chr2 exon 58138719 58139015 58138719 ID=MsG0280009792.01.T01:exon:20974;Parent=MsG0280009792.01.T01
Chr2 exon 58138348 58138494 58138348 ID=MsG0280009792.01.T01:exon:20973;Parent=MsG0280009792.01.T01
Chr2 exon 58137229 58137378 58137229 ID=MsG0280009792.01.T01:exon:20972;Parent=MsG0280009792.01.T01
Chr2 exon 58136622 58136975 58136622 ID=MsG0280009792.01.T01:exon:20971;Parent=MsG0280009792.01.T01
Chr2 CDS 58138719 58139015 58138719 ID=MsG0280009792.01.T01:cds;Parent=MsG0280009792.01.T01
Chr2 CDS 58138348 58138494 58138348 ID=MsG0280009792.01.T01:cds;Parent=MsG0280009792.01.T01
Chr2 CDS 58137229 58137378 58137229 ID=MsG0280009792.01.T01:cds;Parent=MsG0280009792.01.T01
Chr2 CDS 58136622 58136975 58136622 ID=MsG0280009792.01.T01:cds;Parent=MsG0280009792.01.T01
Gene Sequence

>MsG0280009792.01.T01

ATGAGTGAAGGAGAACATAAAAAAGTGAAAGTGGCAGAGGAGGAAGAAGTAGATTTGATCAGCAATCTTCCCGATGCACTTTTAGGTTCTATCATTTATCTACTTCCATACATGGAAGTTGTTAGAACAAGTGTGCTTTCCAAGCGATGGGAGACATTGTGGAAGAACGCTCATGATCTTAATTTTGACCAAATACAAATGTTGAAGTCTTTGATTGAAGATTACATTCAAAATTCTCCACTTGTTGACCGCCTTACAATGGTTATGGAGCGCAAGGTAATTTGTTATGGAAATCGTGTAGCTCCTAGAAATGAGGAATATTTTGATGTAATTGCTGAAGCAGCCTTGATGATTACATCAAATATTGACAGTCATATTGGTCCCTTGAAGAGTTGTACCATTCGACACTTGCCTGAGAGTTATGCAAGTGCGGATGGTATTCTGGGTCATCGAGGTTCAGGCATGAGAAATATATTTAAACATTTGGTTACTCTTTGCCTCGACTTTGAATTAAACAGTAGCAGAAATACCATAGCTCTTTCTTTTGCACTCAAGTCTTGCCCACAATTAATGAATCTTCAAATAAATAACCAGGTCAAGGTTGATTACTATGATCAGAATGACAATGATTCTCTTCCTTACCCCATAAGTTTGTTTTGGCTCAAAAGGGATCCGTGTATGTGTGTTAGCCGCAACCCAAAGTCTGTTTGTATAAAGGGATACAATGGTGGAGAGTTTGAATTTGAGTTTGTTAAGTACTTAGTATTAAATGGCGGAGTTATGGATAATATTACCATTTGGTTTTTGGATGAATGCTCATGGGATGAAGCTGTACCAACTGCATGTTTGCGGTCATATCCAAAACTCTCTCCTAAATTGTCAATTGATTTGAAACCTGGGGCCGAGTATATACAAAAGAATGGTGTGGTAGCTTTGATGAATGGGTGA
Protein sequence

>MsG0280009792.01.T01

MSEGEHKKVKVAEEEEVDLISNLPDALLGSIIYLLPYMEVVRTSVLSKRWETLWKNAHDLNFDQIQMLKSLIEDYIQNSPLVDRLTMVMERKVICYGNRVAPRNEEYFDVIAEAALMITSNIDSHIGPLKSCTIRHLPESYASADGILGHRGSGMRNIFKHLVTLCLDFELNSSRNTIALSFALKSCPQLMNLQINNQVKVDYYDQNDNDSLPYPISLFWLKRDPCMCVSRNPKSVCIKGYNGGEFEFEFVKYLVLNGGVMDNITIWFLDECSWDEAVPTACLRSYPKLSPKLSIDLKPGAEYIQKNGVVALMNG*