AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034526.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034526.01.T01 MTR_6g022390 70.896 134 39 0 1 134 1 134 8.78e-60 187
MsG0680034526.01.T01 MTR_1g066830 57.343 143 54 1 4 146 7 142 9.71e-41 145
MsG0680034526.01.T01 MTR_1g066830 40.650 123 37 2 151 272 299 386 2.56e-21 92.8
MsG0680034526.01.T01 MTR_6g022500 55.102 147 54 3 3 146 99 236 7.94e-40 144
MsG0680034526.01.T01 MTR_6g022500 41.791 134 43 1 141 274 379 477 1.12e-25 105
MsG0680034526.01.T01 MTR_6g011460 54.110 146 57 3 3 146 44 181 1.46e-39 142
MsG0680034526.01.T01 MTR_6g011460 38.028 142 50 2 138 276 318 424 6.85e-18 83.2
MsG0680034526.01.T01 MTR_4g039440 54.110 146 52 4 3 146 32 164 2.21e-39 142
MsG0680034526.01.T01 MTR_4g039440 41.549 142 45 2 138 276 309 415 5.01e-23 97.8
MsG0680034526.01.T01 MTR_1g085120 56.552 145 51 3 5 146 179 314 3.28e-39 142
MsG0680034526.01.T01 MTR_1g085120 56.552 145 51 3 5 146 92 227 4.00e-39 142
MsG0680034526.01.T01 MTR_1g085120 43.284 134 41 1 141 274 374 472 2.54e-27 110
MsG0680034526.01.T01 MTR_1g085120 56.552 145 51 3 5 146 167 302 1.01e-38 142
MsG0680034526.01.T01 MTR_1g085120 43.284 134 41 1 141 274 449 547 3.17e-27 110
MsG0680034526.01.T01 MTR_6g040270 54.286 140 57 1 7 146 10 142 4.73e-38 138
MsG0680034526.01.T01 MTR_6g040270 43.200 125 33 2 152 273 292 381 2.75e-19 87.0
MsG0680034526.01.T01 MTR_5g058000 54.545 143 57 2 4 146 7 141 6.44e-36 132
MsG0680034526.01.T01 MTR_7g055943 52.083 144 61 3 4 146 39 175 1.02e-35 132
MsG0680034526.01.T01 MTR_7g055943 45.312 128 40 3 149 276 327 424 4.57e-22 95.1
MsG0680034526.01.T01 MTR_1089s0010 51.049 143 63 1 4 146 7 142 4.09e-35 130
MsG0680034526.01.T01 MTR_1089s0010 42.857 154 46 4 127 274 263 380 8.01e-26 105
MsG0680034526.01.T01 MTR_3g095640 50.667 150 61 5 4 146 17 160 1.26e-33 120
MsG0680034526.01.T01 MTR_5g061680 48.322 149 66 3 1 146 7 147 1.36e-32 122
MsG0680034526.01.T01 MTR_5g073420 47.973 148 68 2 2 146 8 149 1.91e-32 123
MsG0680034526.01.T01 MTR_5g058100 51.724 145 59 4 4 146 8 143 1.49e-29 115
MsG0680034526.01.T01 MTR_6g022360 45.806 155 60 3 3 153 41 175 3.37e-29 114
MsG0680034526.01.T01 MTR_0009s0080 31.399 293 155 7 7 264 20 301 5.57e-27 108
MsG0680034526.01.T01 MTR_6g044572 43.353 173 59 6 4 146 1 164 7.32e-27 108
MsG0680034526.01.T01 MTR_6g044572 40.146 137 46 3 141 274 286 389 1.76e-20 90.5
MsG0680034526.01.T01 MTR_6g044560 43.353 173 59 6 4 146 177 340 2.10e-26 108
MsG0680034526.01.T01 MTR_6g044560 40.146 137 46 3 141 274 462 565 2.38e-20 90.9
MsG0680034526.01.T01 MTR_3g095600 45.517 145 49 3 2 144 1 117 4.78e-26 104
MsG0680034526.01.T01 MTR_6g022520 43.382 136 42 1 141 276 216 316 1.73e-25 103
MsG0680034526.01.T01 MTR_6g022520 55.714 70 28 2 78 146 1 68 1.82e-13 69.7
MsG0680034526.01.T01 MTR_5g045510 41.558 154 67 5 2 148 9 146 1.16e-23 99.0
MsG0680034526.01.T01 MTR_7g026500 41.176 153 70 4 5 146 14 157 1.17e-21 94.0
MsG0680034526.01.T01 MTR_5g045170 42.000 150 68 6 3 146 12 148 2.49e-21 92.8
MsG0680034526.01.T01 MTR_0571s0010 54.023 87 32 1 5 91 32 110 5.48e-21 85.9
MsG0680034526.01.T01 MTR_5g058350 43.357 143 48 4 4 146 7 116 3.15e-20 85.9
MsG0680034526.01.T01 MTR_1g108820 45.578 147 65 4 4 148 7 140 5.37e-20 89.0
MsG0680034526.01.T01 MTR_1g108820 45.578 147 65 4 4 148 7 140 1.03e-19 87.8
MsG0680034526.01.T01 MTR_6g022410 40.870 115 33 1 159 273 28 107 2.25e-19 81.6
MsG0680034526.01.T01 MTR_5g007410 39.286 140 78 2 7 146 28 160 1.65e-18 85.1
MsG0680034526.01.T01 MTR_5g039490 38.776 147 78 4 4 147 19 156 4.07e-18 83.6
MsG0680034526.01.T01 MTR_5g031970 38.356 146 64 4 4 146 15 137 4.58e-18 83.2
MsG0680034526.01.T01 MTR_6g033095 33.054 239 87 9 32 247 3 191 1.46e-17 79.3
MsG0680034526.01.T01 MTR_2g036470 36.620 142 81 2 7 146 16 150 2.70e-17 81.3
MsG0680034526.01.T01 MTR_6g045333 35.862 145 85 3 4 146 60 198 1.44e-16 79.3
MsG0680034526.01.T01 MTR_3g099830 40.000 145 63 5 4 146 11 133 1.18e-15 76.3
MsG0680034526.01.T01 MTR_3g071850 35.417 144 87 2 4 146 23 161 1.32e-14 73.9
MsG0680034526.01.T01 MTR_5g039450 39.231 130 69 4 4 133 5 124 4.10e-14 72.0
MsG0680034526.01.T01 MTR_2g005990 36.250 160 78 5 2 146 3 153 1.18e-13 70.9
MsG0680034526.01.T01 MTR_1g041245 39.844 128 57 4 4 127 10 121 1.33e-13 70.5
MsG0680034526.01.T01 MTR_5g065100 36.170 141 78 5 10 150 13 141 1.64e-13 70.5
MsG0680034526.01.T01 MTR_3g105060 43.011 93 43 1 4 96 13 95 1.89e-13 70.1
MsG0680034526.01.T01 MTR_4g056030 35.862 145 76 5 5 146 9 139 3.72e-13 69.3
MsG0680034526.01.T01 MTR_7g056433 35.374 147 79 4 5 146 12 147 5.95e-13 68.6
MsG0680034526.01.T01 MTR_5g073370 46.739 92 38 2 5 96 5 85 1.33e-12 67.4
MsG0680034526.01.T01 MTR_8g070950 33.121 157 73 7 5 147 15 153 5.69e-12 65.9
MsG0680034526.01.T01 MTR_1g090900 35.616 146 76 4 5 146 11 142 6.56e-12 63.5
MsG0680034526.01.T01 MTR_5g083890 42.268 97 44 3 5 98 6 93 8.39e-12 65.5
MsG0680034526.01.T01 MTR_5g073340 37.671 146 53 6 4 146 7 117 8.68e-12 64.7
MsG0680034526.01.T01 MTR_7g056447 35.862 145 79 5 5 147 9 141 9.13e-12 64.3
MsG0680034526.01.T01 MTR_4g093690 35.616 146 73 5 5 146 18 146 1.13e-11 63.9
MsG0680034526.01.T01 MTR_4g055990 32.143 168 88 5 5 146 9 176 1.80e-11 64.3
MsG0680034526.01.T01 MTR_6g061720 52.308 65 28 1 10 74 13 74 1.85e-11 59.3
MsG0680034526.01.T01 MTR_4g055990 32.143 168 88 5 5 146 9 176 2.38e-11 63.9
MsG0680034526.01.T01 MTR_8g467790 31.452 124 78 3 4 126 147 264 2.54e-11 63.9
MsG0680034526.01.T01 MTR_7g056277 38.514 148 79 7 3 146 257 396 3.81e-11 63.5
MsG0680034526.01.T01 MTR_5g045700 59.091 44 18 0 7 50 15 58 4.68e-11 57.8
MsG0680034526.01.T01 MTR_7g056287 38.514 148 79 7 3 146 1 140 5.24e-11 62.8
MsG0680034526.01.T01 MTR_7g098590 65.957 47 16 0 4 50 17 63 5.52e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034526.01.T01 AT4G00320 33.333 153 87 4 5 146 13 161 2.09e-14 73.2
MsG0680034526.01.T01 AT3G59190 35.616 146 85 4 5 146 12 152 1.51e-13 70.5
MsG0680034526.01.T01 AT3G59190 35.616 146 85 4 5 146 12 152 1.52e-13 70.9
MsG0680034526.01.T01 AT3G59200 37.324 142 84 3 5 146 7 143 1.95e-13 70.1
MsG0680034526.01.T01 AT3G59200 37.324 142 84 3 5 146 7 143 2.36e-13 70.1
MsG0680034526.01.T01 AT5G41840 34.416 154 85 4 5 146 14 163 8.72e-13 68.6
MsG0680034526.01.T01 AT5G41830 33.987 153 86 4 5 146 13 161 1.22e-12 68.2
MsG0680034526.01.T01 AT3G59000 35.065 154 81 5 4 146 1 146 1.85e-12 67.4
MsG0680034526.01.T01 AT5G41630 33.529 170 94 6 5 161 12 175 3.80e-12 66.6
MsG0680034526.01.T01 AT3G59150 36.054 147 86 6 5 148 13 154 1.78e-11 64.3
MsG0680034526.01.T01 AT3G49030 27.211 294 179 11 5 274 21 303 2.05e-11 64.3
MsG0680034526.01.T01 AT3G49030 27.972 286 171 11 5 266 21 295 2.44e-11 63.9
MsG0680034526.01.T01 AT5G38386 35.714 126 75 3 4 128 1 121 7.34e-11 62.4
MsG0680034526.01.T01 AT5G38386 35.714 126 75 3 4 128 1 121 7.34e-11 62.4

Find 51 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTATTCTCAACTTTGAATT+TGG 0.140470 6:-89759617 MsG0680034526.01.T01:CDS
TTTATCCTCAACTGTAGTTT+TGG 0.244315 6:-89759479 MsG0680034526.01.T01:CDS
GTTTGAGAGATGAAAGTTAT+TGG 0.256566 6:+89759353 None:intergenic
TGTTGTTCTCAAACTTTATA+CGG 0.269278 6:-89759327 MsG0680034526.01.T01:intron
CTTGTAAGAGACTCGCATTC+TGG 0.301720 6:+89758484 None:intergenic
TTCTCAACTTTGAATTTGGC+TGG 0.358009 6:-89759613 MsG0680034526.01.T01:CDS
TATTGTAGAGAAAGCGAGTT+TGG 0.364085 6:+89759679 None:intergenic
TACTACTCATGGAATGCGTT+TGG 0.368622 6:-89758445 MsG0680034526.01.T01:CDS
CCAAATTCAAAGTTGAGAAT+AGG 0.376257 6:+89759617 None:intergenic
TGAAGGTGTCTTTGCTTTGT+TGG 0.377387 6:+89759570 None:intergenic
TTTCCATTCTTTAGATCTAC+TGG 0.394046 6:+89758884 None:intergenic
CAAATTCAAAGTTGAGAATA+GGG 0.402018 6:+89759618 None:intergenic
TCATGTCCAAGGATATCTTT+AGG 0.404917 6:-89758393 MsG0680034526.01.T01:CDS
AGATCAAATGGAGGAGAGTC+AGG 0.409734 6:+89758604 None:intergenic
TGTACTATTTCAAACTTTCA+AGG 0.414858 6:-89758816 MsG0680034526.01.T01:CDS
TAGAGAAAGCGAGTTTGGTT+GGG 0.429916 6:+89759684 None:intergenic
AGTCAGGTTAAAAGAGGTAG+AGG 0.455911 6:+89758620 None:intergenic
CGACTTAGATGGTTTGGAGT+TGG 0.459228 6:+89758539 None:intergenic
GGAAACATTGAGCAAGATAG+TGG 0.460580 6:-89759458 MsG0680034526.01.T01:CDS
AAAATCAGCATTACTACTCA+TGG 0.466492 6:-89758456 MsG0680034526.01.T01:CDS
TGTAAGAAGAGTAGATCAAA+TGG 0.483895 6:+89758592 None:intergenic
GTAGAGAAAGCGAGTTTGGT+TGG 0.483956 6:+89759683 None:intergenic
GCAAAGAGGGGTCCACCGCT+TGG 0.486665 6:+89759649 None:intergenic
TTACATCCTAAAGATATCCT+TGG 0.505409 6:+89758387 None:intergenic
CTTAGCCTCAACGATGATGA+TGG 0.512466 6:-89759762 None:intergenic
TAGGGAGAGAATAGCAAAGA+GGG 0.514122 6:+89759636 None:intergenic
GAGGAGAGTCAGGTTAAAAG+AGG 0.517218 6:+89758614 None:intergenic
CTTCTTACAACGGCATCTAC+AGG 0.521491 6:-89758578 MsG0680034526.01.T01:CDS
ATACCAGTAGATCTAAAGAA+TGG 0.526270 6:-89758887 MsG0680034526.01.T01:CDS
CTTCAATGCATGGTTTGAAG+CGG 0.536539 6:-89759432 MsG0680034526.01.T01:CDS
AAAACGGCTGAAGCGATTGA+AGG 0.538933 6:+89759553 None:intergenic
TCTCAACTTTGAATTTGGCT+GGG 0.540928 6:-89759612 MsG0680034526.01.T01:CDS
ATAGTGGCTTCTTCAATGCA+TGG 0.541013 6:-89759442 MsG0680034526.01.T01:CDS
GTACTATTTCAAACTTTCAA+GGG 0.548065 6:-89758815 MsG0680034526.01.T01:intron
CAATAGTTCTTTCCAAGCGG+TGG 0.551539 6:-89759661 MsG0680034526.01.T01:CDS
GGCGAAACATCTTTGTGTTG+AGG 0.554714 6:-89759411 MsG0680034526.01.T01:CDS
ACACATTCAAGAACGTATGT+TGG 0.556600 6:+89758858 None:intergenic
GCATCAGAGTGTCCACAAAA+CGG 0.566022 6:+89759537 None:intergenic
AAGAAGAGTAGATCAAATGG+AGG 0.572060 6:+89758595 None:intergenic
TAAAGATATCCTTGGACATG+AGG 0.572313 6:+89758395 None:intergenic
TTGATCTACTCTTCTTACAA+CGG 0.585966 6:-89758588 MsG0680034526.01.T01:CDS
AGTAACTATACTCAAATGAA+AGG 0.600204 6:+89758364 None:intergenic
TTGAAATAGTACATGATCTG+AGG 0.603792 6:+89758826 None:intergenic
CAACTCCAAACCATCTAAGT+CGG 0.604750 6:-89758538 MsG0680034526.01.T01:CDS
ATAAAGTTTGAGAACAACAA+GGG 0.611158 6:+89759331 None:intergenic
TGTTTCCAAAACTACAGTTG+AGG 0.618892 6:+89759474 None:intergenic
CTACAATAGTTCTTTCCAAG+CGG 0.629243 6:-89759664 MsG0680034526.01.T01:CDS
ATAGGGAGAGAATAGCAAAG+AGG 0.634347 6:+89759635 None:intergenic
AGCCTCAACGATGATGATGG+TGG 0.658857 6:-89759759 None:intergenic
TATAAAGTTTGAGAACAACA+AGG 0.663543 6:+89759330 None:intergenic
AGGGAGAGAATAGCAAAGAG+GGG 0.697125 6:+89759637 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAATTCTTTCTATTAGAA+AGG - Chr6:89759107-89759126 MsG0680034526.01.T01:intron 20.0%
! AACCATTAGAAAAGATTTAG+AGG + Chr6:89759447-89759466 None:intergenic 25.0%
! AATAAACTGAGCTTAAATGT+AGG + Chr6:89758860-89758879 None:intergenic 25.0%
! AGTAACTATACTCAAATGAA+AGG + Chr6:89759750-89759769 None:intergenic 25.0%
! ATAAACTGAGCTTAAATGTA+GGG + Chr6:89758859-89758878 None:intergenic 25.0%
! ATAAAGTTTGAGAACAACAA+GGG + Chr6:89758783-89758802 None:intergenic 25.0%
! CAAATTCAAAGTTGAGAATA+GGG + Chr6:89758496-89758515 None:intergenic 25.0%
! GTACTATTTCAAACTTTCAA+GGG - Chr6:89759296-89759315 MsG0680034526.01.T01:intron 25.0%
! TATAAAGTTTGAGAACAACA+AGG + Chr6:89758784-89758803 None:intergenic 25.0%
! TGTACTATTTCAAACTTTCA+AGG - Chr6:89759295-89759314 MsG0680034526.01.T01:intron 25.0%
! TGTTGTTCTCAAACTTTATA+CGG - Chr6:89758784-89758803 MsG0680034526.01.T01:intron 25.0%
!! AATAGAAAGAATTTGAAGCT+TGG + Chr6:89759103-89759122 None:intergenic 25.0%
!! ATAGAAAGAATTTGAAGCTT+GGG + Chr6:89759102-89759121 None:intergenic 25.0%
!! ATTTATGATCTTTTGACAGT+GGG - Chr6:89759198-89759217 MsG0680034526.01.T01:intron 25.0%
!! TATTTATGATCTTTTGACAG+TGG - Chr6:89759197-89759216 MsG0680034526.01.T01:intron 25.0%
!! TTTTCTAATGGTTTCTCTAA+TGG - Chr6:89759454-89759473 MsG0680034526.01.T01:CDS 25.0%
!!! GTTTCTCTAATGGTTTTTTT+AGG - Chr6:89759464-89759483 MsG0680034526.01.T01:CDS 25.0%
AAAAATTAACCTCATGTCCA+AGG - Chr6:89759707-89759726 MsG0680034526.01.T01:CDS 30.0%
AAAATCAGCATTACTACTCA+TGG - Chr6:89759655-89759674 MsG0680034526.01.T01:CDS 30.0%
AACCAATTTAGATAATGCCA+AGG + Chr6:89759003-89759022 None:intergenic 30.0%
AACTTTATACGGTTAGACAT+TGG - Chr6:89758795-89758814 MsG0680034526.01.T01:intron 30.0%
ACTTTATACGGTTAGACATT+GGG - Chr6:89758796-89758815 MsG0680034526.01.T01:intron 30.0%
ATACCAGTAGATCTAAAGAA+TGG - Chr6:89759224-89759243 MsG0680034526.01.T01:intron 30.0%
ATCCTTGGCATTATCTAAAT+TGG - Chr6:89758998-89759017 MsG0680034526.01.T01:intron 30.0%
CCAAATTCAAAGTTGAGAAT+AGG + Chr6:89758497-89758516 None:intergenic 30.0%
CCTATTCTCAACTTTGAATT+TGG - Chr6:89758494-89758513 MsG0680034526.01.T01:CDS 30.0%
GATAATCAGAATGATTACGT+AGG - Chr6:89758882-89758901 MsG0680034526.01.T01:CDS 30.0%
GTTTGAGAGATGAAAGTTAT+TGG + Chr6:89758761-89758780 None:intergenic 30.0%
TATTTCAAACTTTCAAGGGT+CGG - Chr6:89759300-89759319 MsG0680034526.01.T01:intron 30.0%
TGTAAGAAGAGTAGATCAAA+TGG + Chr6:89759522-89759541 None:intergenic 30.0%
TTACATCCTAAAGATATCCT+TGG + Chr6:89759727-89759746 None:intergenic 30.0%
TTGAAATAGTACATGATCTG+AGG + Chr6:89759288-89759307 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG - Chr6:89759523-89759542 MsG0680034526.01.T01:CDS 30.0%
TTGGCATTATCTAAATTGGT+TGG - Chr6:89759002-89759021 MsG0680034526.01.T01:intron 30.0%
TTTCCATTCTTTAGATCTAC+TGG + Chr6:89759230-89759249 None:intergenic 30.0%
! AAATCATTTTCCGACTTAGA+TGG + Chr6:89759586-89759605 None:intergenic 30.0%
! AGTTGAGGATAAAAGTTTTG+AGG + Chr6:89758625-89758644 None:intergenic 30.0%
! CAATGAGTTGGATTCAAATA+TGG + Chr6:89759423-89759442 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG - Chr6:89759442-89759461 MsG0680034526.01.T01:CDS 30.0%
! TGGTTTTTGACATAACACTA+TGG + Chr6:89759403-89759422 None:intergenic 30.0%
! TTTATCCTCAACTGTAGTTT+TGG - Chr6:89758632-89758651 MsG0680034526.01.T01:intron 30.0%
! TTTATGATCTTTTGACAGTG+GGG - Chr6:89759199-89759218 MsG0680034526.01.T01:intron 30.0%
!! GTTGAGGATAAAAGTTTTGA+GGG + Chr6:89758624-89758643 None:intergenic 30.0%
AAGAAGAGTAGATCAAATGG+AGG + Chr6:89759519-89759538 None:intergenic 35.0%
ACACATTCAAGAACGTATGT+TGG + Chr6:89759256-89759275 None:intergenic 35.0%
AGATTTAGAGGTCAATGAGT+TGG + Chr6:89759435-89759454 None:intergenic 35.0%
CTACAATAGTTCTTTCCAAG+CGG - Chr6:89758447-89758466 MsG0680034526.01.T01:CDS 35.0%
TAAAGATATCCTTGGACATG+AGG + Chr6:89759719-89759738 None:intergenic 35.0%
TACATGAACCCAATCAAGAA+TGG + Chr6:89759058-89759077 None:intergenic 35.0%
TATTGTAGAGAAAGCGAGTT+TGG + Chr6:89758435-89758454 None:intergenic 35.0%
TCATGTCCAAGGATATCTTT+AGG - Chr6:89759718-89759737 MsG0680034526.01.T01:CDS 35.0%
TCTCAACTTTGAATTTGGCT+GGG - Chr6:89758499-89758518 MsG0680034526.01.T01:CDS 35.0%
TGTTTCCAAAACTACAGTTG+AGG + Chr6:89758640-89758659 None:intergenic 35.0%
TTCTCAACTTTGAATTTGGC+TGG - Chr6:89758498-89758517 MsG0680034526.01.T01:CDS 35.0%
! ATTTTCCGACTTAGATGGTT+TGG + Chr6:89759581-89759600 None:intergenic 35.0%
! TTATGATCTTTTGACAGTGG+GGG - Chr6:89759200-89759219 MsG0680034526.01.T01:intron 35.0%
!!! AAAAGTTTTGAGGGATCTGT+TGG + Chr6:89758615-89758634 None:intergenic 35.0%
!!! AAATGTAGGGTTTTGAGTGA+CGG + Chr6:89758846-89758865 None:intergenic 35.0%
AGCATGGAAATCTTCTAGGT+TGG + Chr6:89758925-89758944 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + Chr6:89759494-89759513 None:intergenic 40.0%
ATAGGGAGAGAATAGCAAAG+AGG + Chr6:89758479-89758498 None:intergenic 40.0%
ATAGTGGCTTCTTCAATGCA+TGG - Chr6:89758669-89758688 MsG0680034526.01.T01:intron 40.0%
ATCAGAAGGGTTGAAATCCT+TGG - Chr6:89758983-89759002 MsG0680034526.01.T01:intron 40.0%
ATTTCCATGCTGAACATGTC+TGG - Chr6:89758934-89758953 MsG0680034526.01.T01:intron 40.0%
CAACTCCAAACCATCTAAGT+CGG - Chr6:89759573-89759592 MsG0680034526.01.T01:CDS 40.0%
CTTCAATGCATGGTTTGAAG+CGG - Chr6:89758679-89758698 MsG0680034526.01.T01:intron 40.0%
GAACCCAATCAAGAATGGAA+GGG + Chr6:89759053-89759072 None:intergenic 40.0%
GCATGGAAATCTTCTAGGTT+GGG + Chr6:89758924-89758943 None:intergenic 40.0%
GGAAACATTGAGCAAGATAG+TGG - Chr6:89758653-89758672 MsG0680034526.01.T01:intron 40.0%
GTCGAAACAACACATCAGAA+GGG - Chr6:89758970-89758989 MsG0680034526.01.T01:intron 40.0%
GTTCAGCATGGAAATCTTCT+AGG + Chr6:89758929-89758948 None:intergenic 40.0%
TACTACTCATGGAATGCGTT+TGG - Chr6:89759666-89759685 MsG0680034526.01.T01:CDS 40.0%
TAGAGAAAGCGAGTTTGGTT+GGG + Chr6:89758430-89758449 None:intergenic 40.0%
TAGGGAGAGAATAGCAAAGA+GGG + Chr6:89758478-89758497 None:intergenic 40.0%
TCTCCCTTCCATTCTTGATT+GGG - Chr6:89759047-89759066 MsG0680034526.01.T01:intron 40.0%
TGAACCCAATCAAGAATGGA+AGG + Chr6:89759054-89759073 None:intergenic 40.0%
TTCTCCCTTCCATTCTTGAT+TGG - Chr6:89759046-89759065 MsG0680034526.01.T01:intron 40.0%
! GAATTTGAAGCTTGGGAGAA+TGG + Chr6:89759095-89759114 None:intergenic 40.0%
!! TGAAGGTGTCTTTGCTTTGT+TGG + Chr6:89758544-89758563 None:intergenic 40.0%
AAAACGGCTGAAGCGATTGA+AGG + Chr6:89758561-89758580 None:intergenic 45.0%
AAGACCAGACATGTTCAGCA+TGG + Chr6:89758941-89758960 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG + Chr6:89759510-89759529 None:intergenic 45.0%
AGGGAGAGAATAGCAAAGAG+GGG + Chr6:89758477-89758496 None:intergenic 45.0%
ATGCTGAACATGTCTGGTCT+TGG - Chr6:89758940-89758959 MsG0680034526.01.T01:intron 45.0%
CAATAGTTCTTTCCAAGCGG+TGG - Chr6:89758450-89758469 MsG0680034526.01.T01:CDS 45.0%
CTTCTTACAACGGCATCTAC+AGG - Chr6:89759533-89759552 MsG0680034526.01.T01:CDS 45.0%
CTTGTAAGAGACTCGCATTC+TGG + Chr6:89759630-89759649 None:intergenic 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + Chr6:89759500-89759519 None:intergenic 45.0%
GGCGAAACATCTTTGTGTTG+AGG - Chr6:89758700-89758719 MsG0680034526.01.T01:intron 45.0%
GGTCGAAACAACACATCAGA+AGG - Chr6:89758969-89758988 MsG0680034526.01.T01:intron 45.0%
GTAGAGAAAGCGAGTTTGGT+TGG + Chr6:89758431-89758450 None:intergenic 45.0%
! CGACTTAGATGGTTTGGAGT+TGG + Chr6:89759575-89759594 None:intergenic 45.0%
! GCATCAGAGTGTCCACAAAA+CGG + Chr6:89758577-89758596 None:intergenic 45.0%
! TGAGTGACGGAAGATCAACA+CGG + Chr6:89758833-89758852 None:intergenic 45.0%
!! TCTGATGTGTTGTTTCGACC+AGG + Chr6:89758969-89758988 None:intergenic 45.0%
!! AAAATACATAAAAAAAAAAA+AGG + Chr6:89759166-89759185 None:intergenic 5.0%
AAGCCTTCTCCCACTAAGTG+GGG - Chr6:89759354-89759373 MsG0680034526.01.T01:CDS 50.0%
ATGTAGCCAACCCCACTTAG+TGG + Chr6:89759367-89759386 None:intergenic 50.0%
CAAGCCTTCTCCCACTAAGT+GGG - Chr6:89759353-89759372 MsG0680034526.01.T01:CDS 50.0%
GGTTGGAGCTACTATCGATG+TGG - Chr6:89759019-89759038 MsG0680034526.01.T01:intron 50.0%
TGTAGCCAACCCCACTTAGT+GGG + Chr6:89759366-89759385 None:intergenic 50.0%
! GAGTGACGGAAGATCAACAC+GGG + Chr6:89758832-89758851 None:intergenic 50.0%
!! ACTAAGTGGGGTTGGCTACA+TGG - Chr6:89759366-89759385 MsG0680034526.01.T01:CDS 50.0%
!! CAATCGCTTCAGCCGTTTTG+TGG - Chr6:89758562-89758581 MsG0680034526.01.T01:CDS 50.0%
!! CATGTCTGGTCTTGGAAACC+TGG - Chr6:89758948-89758967 MsG0680034526.01.T01:intron 50.0%
CAACCCCACTTAGTGGGAGA+AGG + Chr6:89759360-89759379 None:intergenic 55.0%
CCAAGCCTTCTCCCACTAAG+TGG - Chr6:89759352-89759371 MsG0680034526.01.T01:CDS 55.0%
CCACTTAGTGGGAGAAGGCT+TGG + Chr6:89759355-89759374 None:intergenic 55.0%
CTTCTCCCACTAAGTGGGGT+TGG - Chr6:89759358-89759377 MsG0680034526.01.T01:CDS 55.0%
GCAAAGAGGGGTCCACCGCT+TGG + Chr6:89758465-89758484 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 89758362 89759771 89758362 ID=MsG0680034526.01;Name=MsG0680034526.01
Chr6 mRNA 89758362 89759771 89758362 ID=MsG0680034526.01.T01;Parent=MsG0680034526.01;Name=MsG0680034526.01.T01;_AED=0.26;_eAED=0.26;_QI=0|0|0|1|0|0|3|0|276
Chr6 exon 89759328 89759771 89759328 ID=MsG0680034526.01.T01:exon:26832;Parent=MsG0680034526.01.T01
Chr6 exon 89758816 89758916 89758816 ID=MsG0680034526.01.T01:exon:26831;Parent=MsG0680034526.01.T01
Chr6 exon 89758362 89758647 89758362 ID=MsG0680034526.01.T01:exon:26830;Parent=MsG0680034526.01.T01
Chr6 CDS 89759328 89759771 89759328 ID=MsG0680034526.01.T01:cds;Parent=MsG0680034526.01.T01
Chr6 CDS 89758816 89758916 89758816 ID=MsG0680034526.01.T01:cds;Parent=MsG0680034526.01.T01
Chr6 CDS 89758362 89758647 89758362 ID=MsG0680034526.01.T01:cds;Parent=MsG0680034526.01.T01
Gene Sequence

>MsG0680034526.01.T01

ATGATGATGGTGGATAGAATCAGCGATTTATCAGATGAGTTATTGTCTCACATTCTCTCTTTTCTCCCAACCAAACTCGCTTTCTCTACAATAGTTCTTTCCAAGCGGTGGACCCCTCTTTGCTATTCTCTCCCTATTCTCAACTTTGAATTTGGCTGGGAGTACTTGTCTCTAACTAGCCAACAAAGCAAAGACACCTTCAATCGCTTCAGCCGTTTTGTGGACACTCTGATGCTCTCTTATCTTTCAGCCAACAGATCCCTCAAAACTTTTATCCTCAACTGTAGTTTTGGAAACATTGAGCAAGATAGTGGCTTCTTCAATGCATGGTTTGAAGCGGCGAAACATCTTTGTGTTGAGGAATTTCATCTAACTATGTTTTTTCACATCTTAAATCCAATAACTTTCATCTCTCAAACCCTTGTTGTTCTCAAACTTTATACGTGGGGGAATACCAGTAGATCTAAAGAATGGAAATGTCCAACATACGTTCTTGAATGTGTTTCTTCTCACCTCAGATCATGTACTATTTCAAACTTTCAAGGGTCTTCCTCTACCTCTTTTAACCTGACTCTCCTCCATTTGATCTACTCTTCTTACAACGGCATCTACAGGTCTTCTCTCTACATGTCCAACTCCAAACCATCTAAGTCGGAAAATGATTTTCTATTTACAAAATATATTTTCCAGAATGCGAGTCTCTTACAAGACATGAAAATCAGCATTACTACTCATGGAATGCGTTTGGAAAGAAGTCAGATTCTTGAAAAATTAACCTCATGTCCAAGGATATCTTTAGGATGTAACCTTTCATTTGAGTATAGTTACTAG
Protein sequence

>MsG0680034526.01.T01

MMMVDRISDLSDELLSHILSFLPTKLAFSTIVLSKRWTPLCYSLPILNFEFGWEYLSLTSQQSKDTFNRFSRFVDTLMLSYLSANRSLKTFILNCSFGNIEQDSGFFNAWFEAAKHLCVEEFHLTMFFHILNPITFISQTLVVLKLYTWGNTSRSKEWKCPTYVLECVSSHLRSCTISNFQGSSSTSFNLTLLHLIYSSYNGIYRSSLYMSNSKPSKSENDFLFTKYIFQNASLLQDMKISITTHGMRLERSQILEKLTSCPRISLGCNLSFEYSY*