AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009796.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009796.01.T01 MTR_2g070780 92.669 341 25 0 6 346 1 341 0.0 644
MsG0280009796.01.T01 MTR_6g034190 58.269 520 193 4 6 510 1 511 0.0 587
MsG0280009796.01.T01 MTR_2g072240 50.487 513 181 8 6 510 1 448 3.41e-165 475
MsG0280009796.01.T01 MTR_2g071700 72.586 321 85 1 22 339 18 338 4.53e-160 458
MsG0280009796.01.T01 MTR_2g071720 76.796 181 26 1 346 510 1 181 4.03e-94 284
MsG0280009796.01.T01 MTR_2g070820 90.991 111 10 0 280 390 1 111 1.04e-64 206
MsG0280009796.01.T01 MTR_2g070660 56.345 197 52 3 6 198 1 167 1.72e-59 194
MsG0280009796.01.T01 MTR_2g070810 93.617 47 3 0 6 52 49 95 1.37e-22 92.4
MsG0280009796.01.T01 MTR_2g047858 24.138 464 282 16 8 457 95 502 1.34e-15 79.7
MsG0280009796.01.T01 MTR_8g468470 25.658 456 283 20 21 457 13 431 1.99e-12 69.7
MsG0280009796.01.T01 MTR_7g007370 50.820 61 30 0 6 66 1 61 1.95e-11 65.9
MsG0280009796.01.T01 MTR_8g014180 52.727 55 26 0 6 60 1 55 2.34e-11 59.7
MsG0280009796.01.T01 MTR_4g024770 40.845 71 42 0 2 72 4 74 2.39e-11 60.1
MsG0280009796.01.T01 MTR_7g095350 27.331 311 193 11 27 328 13 299 3.35e-11 66.2
MsG0280009796.01.T01 MTR_7g095350 27.331 311 193 11 27 328 21 307 3.47e-11 66.2
MsG0280009796.01.T01 MTR_1g016340 22.247 454 284 13 17 457 15 412 3.79e-11 65.5
MsG0280009796.01.T01 MTR_7g095350 27.331 311 193 11 27 328 13 299 3.83e-11 65.5
MsG0280009796.01.T01 MTR_1g016340 22.247 454 284 13 17 457 10 407 4.42e-11 65.5
MsG0280009796.01.T01 MTR_7g095350 27.331 311 193 11 27 328 13 299 4.46e-11 65.5
MsG0280009796.01.T01 MTR_2g082860 54.000 50 23 0 21 70 26 75 4.70e-11 60.8
MsG0280009796.01.T01 MTR_7g095350 27.331 311 193 11 27 328 21 307 5.73e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009796.01.T01 AT1G80960 26.957 460 257 16 22 457 50 454 2.10e-21 97.4
MsG0280009796.01.T01 AT1G80960 26.957 460 257 16 22 457 50 454 2.10e-21 97.4
MsG0280009796.01.T01 AT1G80960 26.957 460 257 16 22 457 50 454 2.10e-21 97.4
MsG0280009796.01.T01 AT1G80960 26.957 460 257 16 22 457 11 415 2.19e-21 97.1
MsG0280009796.01.T01 AT1G80960 30.565 301 155 10 22 308 50 310 7.54e-21 95.1
MsG0280009796.01.T01 AT1G80960 30.565 301 155 10 22 308 50 310 8.42e-21 95.5
MsG0280009796.01.T01 AT3G59190 24.158 505 288 23 15 467 5 466 3.80e-17 84.7
MsG0280009796.01.T01 AT1G67390 26.923 286 172 8 21 302 40 292 2.76e-15 78.6
MsG0280009796.01.T01 AT3G59190 24.814 403 230 17 15 384 5 367 2.14e-13 72.4
MsG0280009796.01.T01 AT1G78760 23.062 503 283 18 11 481 5 435 4.77e-13 71.6
MsG0280009796.01.T01 AT3G60790 27.451 306 176 14 7 306 40 305 2.69e-12 69.3
MsG0280009796.01.T01 AT5G41830 26.667 240 138 7 11 243 2 210 4.50e-12 68.9
MsG0280009796.01.T01 AT5G62970 22.629 464 267 17 29 457 10 416 5.04e-12 68.6

Find 104 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAATCTTAATATATTTA+AGG 0.083479 2:-58242324 None:intergenic
CCTCACACTTTAGGTCAATT+TGG 0.205008 2:+58243599 MsG0280009796.01.T01:intron
TCAAAATCTGTTGAGGATTA+AGG 0.205965 2:-58242165 None:intergenic
GTTAAGTACTTAATATTAAA+TGG 0.208632 2:+58243768 MsG0280009796.01.T01:CDS
TTCTGAATAATATTACAATT+TGG 0.250934 2:+58243796 MsG0280009796.01.T01:CDS
CTTACCCTGGAAGTTTGTTT+TGG 0.254096 2:+58243655 MsG0280009796.01.T01:CDS
TGTGAACGAGCGTAGGATTT+TGG 0.266869 2:+58242348 MsG0280009796.01.T01:CDS
TGAAATTTGTGGTGGCATTT+TGG 0.276341 2:+58242543 MsG0280009796.01.T01:CDS
CCTTGATACAAACATTCTTT+AGG 0.277807 2:-58243713 None:intergenic
GATTCTTGTGATTATCGTTA+TGG 0.307940 2:+58242025 MsG0280009796.01.T01:CDS
GCACGTAGAACCCGAAGTTT+TGG 0.308366 2:-58242445 None:intergenic
TAAAATGGCTGAAGGAATAA+TGG 0.312589 2:+58241220 None:intergenic
TCGTAGCAACTGCATGTTTA+CGG 0.321573 2:+58243847 MsG0280009796.01.T01:CDS
TTCAGCCAAAACAAACTTCC+AGG 0.338704 2:-58243660 None:intergenic
ATAGAGTATATAAGAAAATA+TGG 0.344916 2:+58243918 MsG0280009796.01.T01:CDS
TTTGTCTTTCGTCAAAATTA+AGG 0.347473 2:-58241412 None:intergenic
TACAATAATGTTCAAATGCT+TGG 0.353231 2:+58242469 MsG0280009796.01.T01:CDS
TCTTCCTCCATAACTCTGAT+TGG 0.353522 2:-58241260 None:intergenic
AACTTCAATCTTGCAGTGAC+TGG 0.362551 2:+58241479 MsG0280009796.01.T01:CDS
CTTAGAGGCCCCAAAACTTC+GGG 0.365917 2:+58242435 MsG0280009796.01.T01:CDS
TTGTGCAAGTGGGGATGTTG+TGG 0.396215 2:+58241949 MsG0280009796.01.T01:CDS
ATCTTAATATATTTAAGGCT+TGG 0.397703 2:-58242319 None:intergenic
AGGGATATTATTGAAATTTG+TGG 0.398913 2:+58242532 MsG0280009796.01.T01:CDS
TGTGCAAGTGGGGATGTTGT+GGG 0.402090 2:+58241950 MsG0280009796.01.T01:CDS
CAACTCAAGAACCTTAAAAC+TGG 0.403099 2:-58242113 None:intergenic
TTATTTGAAGATTCATTAGT+TGG 0.403722 2:-58243487 None:intergenic
TGCAAGATTGAAGTTTAGTC+TGG 0.413386 2:-58241471 None:intergenic
TCATGAAGATCTGATCTTAG+AGG 0.415542 2:+58242420 MsG0280009796.01.T01:CDS
TCAAATATCGACAATCATAT+TGG 0.415878 2:+58241887 MsG0280009796.01.T01:CDS
TATTTGAAGATTCATTAGTT+GGG 0.418765 2:-58243486 None:intergenic
CCTAAAGAATGTTTGTATCA+AGG 0.437189 2:+58243713 MsG0280009796.01.T01:CDS
AAAATGGCTGAAGGAATAAT+GGG 0.447788 2:+58241221 None:intergenic
TACAAACATTCTTTAGGTTG+TGG 0.449660 2:-58243707 None:intergenic
ATGGTGGTAGCTTTGATGAT+TGG 0.451451 2:+58243937 MsG0280009796.01.T01:CDS
TGGTGGTAGCTTTGATGATT+GGG 0.457946 2:+58243938 MsG0280009796.01.T01:CDS
GTTCTCACGACTTCCGTGTA+AGG 0.459091 2:-58241341 None:intergenic
GGGATGTTGTGGGGTGGATG+AGG 0.463671 2:+58241960 MsG0280009796.01.T01:CDS
GCATTCCTTTCAATCATGTC+TGG 0.464346 2:-58242055 None:intergenic
TATCCCAGGTTTCAGATCAA+TGG 0.467659 2:-58243898 None:intergenic
CTAAAGAATGTTTGTATCAA+GGG 0.467863 2:+58243714 MsG0280009796.01.T01:CDS
TCTAATGCTACAACTCTTCA+AGG 0.468328 2:-58241912 None:intergenic
ATATAAGCTAGAAGTGCATC+AGG 0.471803 2:-58241305 None:intergenic
TCCCCACTTGCACAACTCTC+AGG 0.473005 2:-58241941 None:intergenic
CCACAATGATTCCCATCGCT+TGG 0.478803 2:-58241375 None:intergenic
TTATCCATTGATCTGAAACC+TGG 0.478986 2:+58243894 MsG0280009796.01.T01:CDS
AGGGACACCAATCAGAGTTA+TGG 0.491843 2:+58241253 MsG0280009796.01.T01:CDS
ACGACTTCCGTGTAAGGAAG+TGG 0.493916 2:-58241335 None:intergenic
AAACTGGAGAAAACTTCAAA+AGG 0.495741 2:-58242097 None:intergenic
CATTTCTCCACTTCCTTACA+CGG 0.495992 2:+58241328 MsG0280009796.01.T01:CDS
GTGCAAGTGGGGATGTTGTG+GGG 0.497345 2:+58241951 MsG0280009796.01.T01:CDS
TCTTAGAGGCCCCAAAACTT+CGG 0.498004 2:+58242434 MsG0280009796.01.T01:CDS
GGAATAATGGGTGAAGGAGA+AGG 0.503229 2:+58241233 MsG0280009796.01.T01:CDS
GATAATTTCAGAGAGAGCTT+CGG 0.503369 2:-58243876 None:intergenic
ATCTTCATGATTACAAATAA+CGG 0.505209 2:-58242407 None:intergenic
CAAGTGGGGATGTTGTGGGG+TGG 0.508240 2:+58241954 MsG0280009796.01.T01:CDS
CAAAACAAACTTCCAGGGTA+AGG 0.518602 2:-58243654 None:intergenic
CTTTCGTCAAAATTAAGGCT+AGG 0.519973 2:-58241407 None:intergenic
TTAAGAAATCACATTTCTCA+AGG 0.522132 2:-58242273 None:intergenic
TCAATTCAAAATCGAGGCAA+AGG 0.529641 2:-58243415 None:intergenic
TTTCTTATATACTCTATCCC+AGG 0.537281 2:-58243912 None:intergenic
TATCCATTGATCTGAAACCT+GGG 0.540917 2:+58243895 MsG0280009796.01.T01:CDS
ATTTGAAGATTCATTAGTTG+GGG 0.541423 2:-58243485 None:intergenic
TGCAGTGACTGGGCAACGTA+AGG 0.547546 2:+58241490 MsG0280009796.01.T01:CDS
GAATAATGGGTGAAGGAGAA+GGG 0.553775 2:+58241234 MsG0280009796.01.T01:CDS
CAATTCAAAATCGAGGCAAA+GGG 0.555813 2:-58243414 None:intergenic
AACTTCAAAAGGTAAATCAA+TGG 0.562125 2:-58242086 None:intergenic
GATATTATTGAAATTTGTGG+TGG 0.564526 2:+58242535 MsG0280009796.01.T01:CDS
TACCGTTCAATTCAAAATCG+AGG 0.564943 2:-58243421 None:intergenic
ACTTCAATCTTGCAGTGACT+GGG 0.567133 2:+58241480 MsG0280009796.01.T01:CDS
CAAGTGTGCTATCCAAGCGA+TGG 0.569302 2:+58241363 MsG0280009796.01.T01:CDS
ATGTGATTTCTTAACAGATG+AGG 0.570169 2:+58242282 MsG0280009796.01.T01:CDS
TCAGCCAAAACAAACTTCCA+GGG 0.571326 2:-58243659 None:intergenic
TCTTGTGATTATCGTTATGG+AGG 0.571564 2:+58242028 MsG0280009796.01.T01:CDS
TTTGGTTTCTGCATTTAACA+TGG 0.582670 2:+58242366 MsG0280009796.01.T01:CDS
GAATACCAGACATGATTGAA+AGG 0.585171 2:+58242050 MsG0280009796.01.T01:CDS
ATCTGTTGAGGATTAAGGAA+GGG 0.593155 2:-58242160 None:intergenic
AAGTGTGCTATCCAAGCGAT+GGG 0.595727 2:+58241364 MsG0280009796.01.T01:CDS
GGTCATCGAGGTTCTAGCAT+GGG 0.596942 2:+58243368 MsG0280009796.01.T01:CDS
TTTGTGATGTGAACGAGCGT+AGG 0.601006 2:+58242341 MsG0280009796.01.T01:CDS
GAATCTTCAAATAAATAACC+AGG 0.602091 2:+58243496 MsG0280009796.01.T01:CDS
AAAAGGCATAAAATGGCTGA+AGG 0.603046 2:+58241212 None:intergenic
TACTATGATCAAAATGACAA+TGG 0.603700 2:+58243624 MsG0280009796.01.T01:CDS
GTTTGTATCAAGGGATACAA+AGG 0.605257 2:+58243723 MsG0280009796.01.T01:CDS
CCAAGCGATGGGAATCATTG+TGG 0.608200 2:+58241375 MsG0280009796.01.T01:CDS
AATCTGTTGAGGATTAAGGA+AGG 0.609356 2:-58242161 None:intergenic
AAGTACTTAATATTAAATGG+AGG 0.612207 2:+58243771 MsG0280009796.01.T01:CDS
ACAGGTAGATCTTGAAAGTG+AGG 0.613723 2:+58241832 MsG0280009796.01.T01:intron
GATATTTGATGTAACCATCA+TGG 0.615010 2:-58241873 None:intergenic
TTGTGGCTGACACACCTACA+CGG 0.616160 2:-58243690 None:intergenic
AATGGCTGTCTTCCTTACCC+TGG 0.616901 2:+58243642 MsG0280009796.01.T01:CDS
AGAGTATTCAAAATCTGTTG+AGG 0.620364 2:-58242172 None:intergenic
TGCCTGAGAGTTGTGCAAGT+GGG 0.620485 2:+58241939 MsG0280009796.01.T01:CDS
GCCTGAGAGTTGTGCAAGTG+GGG 0.621594 2:+58241940 MsG0280009796.01.T01:CDS
CAAGAGATGAACAATGAGAG+AGG 0.622832 2:-58242240 None:intergenic
GACACCAATCAGAGTTATGG+AGG 0.626748 2:+58241256 MsG0280009796.01.T01:CDS
GGGTCATCGAGGTTCTAGCA+TGG 0.629061 2:+58243367 MsG0280009796.01.T01:intron
TGTGGCTGACACACCTACAC+GGG 0.629776 2:-58243689 None:intergenic
GCTGAAGGAATAATGGGTGA+AGG 0.630272 2:+58241227 MsG0280009796.01.T01:CDS
CTAATGCTACAACTCTTCAA+GGG 0.636034 2:-58241911 None:intergenic
GGCTGAAAAGAGACCCGTGT+AGG 0.671792 2:+58243676 MsG0280009796.01.T01:CDS
TTGCCTGAGAGTTGTGCAAG+TGG 0.675075 2:+58241938 MsG0280009796.01.T01:CDS
GAGTATATAAGAAAATATGG+TGG 0.676614 2:+58243921 MsG0280009796.01.T01:CDS
TGATTGTCTTAGGGTCATCG+AGG 0.687412 2:+58243356 MsG0280009796.01.T01:intron
TTTGAAGATTCATTAGTTGG+GGG 0.726871 2:-58243484 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATAAAATTTATATA+TGG + Chr2:58242741-58242760 MsG0280009796.01.T01:intron 0.0%
!! AATTCTTTATATAAATTCTT+TGG - Chr2:58243254-58243273 None:intergenic 10.0%
!! TCAAATATGATATATATTAT+TGG + Chr2:58241797-58241816 MsG0280009796.01.T01:intron 10.0%
!! ATAGAGTATATAAGAAAATA+TGG + Chr2:58243918-58243937 MsG0280009796.01.T01:CDS 15.0%
!! ATGATATCTATTTAATACTT+AGG + Chr2:58243000-58243019 MsG0280009796.01.T01:intron 15.0%
!! CACAAATCTTAATATATTTA+AGG - Chr2:58242327-58242346 None:intergenic 15.0%
!! GTTAAGTACTTAATATTAAA+TGG + Chr2:58243768-58243787 MsG0280009796.01.T01:CDS 15.0%
!! TAGATGAACTTTAATTATAA+AGG + Chr2:58241770-58241789 MsG0280009796.01.T01:intron 15.0%
!! TTCTGAATAATATTACAATT+TGG + Chr2:58243796-58243815 MsG0280009796.01.T01:CDS 15.0%
!!! CATCTATTTTATTAGAAAAA+TGG - Chr2:58241756-58241775 None:intergenic 15.0%
!!! TAATATTACAATTTGGTTTT+TGG + Chr2:58243803-58243822 MsG0280009796.01.T01:CDS 15.0%
!!! TATATAAAGAATTGAAGTTT+TGG + Chr2:58243261-58243280 MsG0280009796.01.T01:intron 15.0%
!!! TGTTTTTTACTATAAACTTT+AGG + Chr2:58241547-58241566 MsG0280009796.01.T01:intron 15.0%
!! AAATAATAGATACTCATGAT+AGG - Chr2:58243195-58243214 None:intergenic 20.0%
!! AAGTACTTAATATTAAATGG+AGG + Chr2:58243771-58243790 MsG0280009796.01.T01:CDS 20.0%
!! AGTTCATAGCTTATTATATA+TGG + Chr2:58242935-58242954 MsG0280009796.01.T01:intron 20.0%
!! ATCAAACAGTTCATATTTAA+TGG + Chr2:58241681-58241700 MsG0280009796.01.T01:intron 20.0%
!! ATCTTCATGATTACAAATAA+CGG - Chr2:58242410-58242429 None:intergenic 20.0%
!! CATTTCTTTATAGTTAATAG+AGG + Chr2:58242628-58242647 MsG0280009796.01.T01:intron 20.0%
!! TAATCAATATTTGTAGCATA+AGG - Chr2:58243087-58243106 None:intergenic 20.0%
!! TATTTGAAGATTCATTAGTT+GGG - Chr2:58243489-58243508 None:intergenic 20.0%
!! TTATTTGAAGATTCATTAGT+TGG - Chr2:58243490-58243509 None:intergenic 20.0%
!!! AGGTTTTATTACTATTCAAT+AGG - Chr2:58243063-58243082 None:intergenic 20.0%
!!! ATCTTAATATATTTAAGGCT+TGG - Chr2:58242322-58242341 None:intergenic 20.0%
!!! GGTTTTATTACTATTCAATA+GGG - Chr2:58243062-58243081 None:intergenic 20.0%
!!! TATAGTAATACTACATTTTG+AGG - Chr2:58243293-58243312 None:intergenic 20.0%
!!! TATATTTTCTGATTGTCTTA+GGG + Chr2:58243347-58243366 MsG0280009796.01.T01:intron 20.0%
!!! TTATATTTTCTGATTGTCTT+AGG + Chr2:58243346-58243365 MsG0280009796.01.T01:intron 20.0%
! AACTTCAAAAGGTAAATCAA+TGG - Chr2:58242089-58242108 None:intergenic 25.0%
! ACTAATTGAGTATTTGTGAT+AGG + Chr2:58242958-58242977 MsG0280009796.01.T01:intron 25.0%
! AGGGATATTATTGAAATTTG+TGG + Chr2:58242532-58242551 MsG0280009796.01.T01:CDS 25.0%
! ATTTGAAGATTCATTAGTTG+GGG - Chr2:58243488-58243507 None:intergenic 25.0%
! CTAAAGAATGTTTGTATCAA+GGG + Chr2:58243714-58243733 MsG0280009796.01.T01:CDS 25.0%
! GAATCTTCAAATAAATAACC+AGG + Chr2:58243496-58243515 MsG0280009796.01.T01:CDS 25.0%
! GAGTATATAAGAAAATATGG+TGG + Chr2:58243921-58243940 MsG0280009796.01.T01:CDS 25.0%
! GATATTATTGAAATTTGTGG+TGG + Chr2:58242535-58242554 MsG0280009796.01.T01:CDS 25.0%
! TACAATAATGTTCAAATGCT+TGG + Chr2:58242469-58242488 MsG0280009796.01.T01:CDS 25.0%
! TACTATGATCAAAATGACAA+TGG + Chr2:58243624-58243643 MsG0280009796.01.T01:CDS 25.0%
! TATTTAATGGAGAATGAACT+AGG + Chr2:58241694-58241713 MsG0280009796.01.T01:intron 25.0%
! TCAAATATCGACAATCATAT+TGG + Chr2:58241887-58241906 MsG0280009796.01.T01:CDS 25.0%
! TTAAGAAATCACATTTCTCA+AGG - Chr2:58242276-58242295 None:intergenic 25.0%
! TTTGTCTTTCGTCAAAATTA+AGG - Chr2:58241415-58241434 None:intergenic 25.0%
!! TAAGCTATGAACTTTTTGTA+TGG - Chr2:58242928-58242947 None:intergenic 25.0%
!!! GGACAAAATGTTTTTATAGA+TGG + Chr2:58242490-58242509 MsG0280009796.01.T01:CDS 25.0%
!!! GGGAAGTATCTTTAAAAATT+TGG + Chr2:58243388-58243407 MsG0280009796.01.T01:CDS 25.0%
!!! TTTTTTGTGAAGATTAACCA+TGG - Chr2:58241635-58241654 None:intergenic 25.0%
AAACTGGAGAAAACTTCAAA+AGG - Chr2:58242100-58242119 None:intergenic 30.0%
AGCCAAAAAATCAAATTGCA+TGG - Chr2:58243125-58243144 None:intergenic 30.0%
ATGTGATTTCTTAACAGATG+AGG + Chr2:58242282-58242301 MsG0280009796.01.T01:CDS 30.0%
CAATATTTGTAGCATAAGGA+AGG - Chr2:58243083-58243102 None:intergenic 30.0%
CACAAAAAATCACGCTTATT+GGG + Chr2:58242895-58242914 MsG0280009796.01.T01:intron 30.0%
CCTAAAGAATGTTTGTATCA+AGG + Chr2:58243713-58243732 MsG0280009796.01.T01:CDS 30.0%
CCTTGATACAAACATTCTTT+AGG - Chr2:58243716-58243735 None:intergenic 30.0%
GATATTTGATGTAACCATCA+TGG - Chr2:58241876-58241895 None:intergenic 30.0%
GATTCTTGTGATTATCGTTA+TGG + Chr2:58242025-58242044 MsG0280009796.01.T01:CDS 30.0%
TATTGGACTTTATGCATAAC+AGG + Chr2:58241814-58241833 MsG0280009796.01.T01:intron 30.0%
TCAAAATCTGTTGAGGATTA+AGG - Chr2:58242168-58242187 None:intergenic 30.0%
TCACAAAAAATCACGCTTAT+TGG + Chr2:58242894-58242913 MsG0280009796.01.T01:intron 30.0%
TTTCTTATATACTCTATCCC+AGG - Chr2:58243915-58243934 None:intergenic 30.0%
TTTGAAGATTCATTAGTTGG+GGG - Chr2:58243487-58243506 None:intergenic 30.0%
! AGAGTATTCAAAATCTGTTG+AGG - Chr2:58242175-58242194 None:intergenic 30.0%
! TGAAGTTTTCTCCAGTTTTA+AGG + Chr2:58242102-58242121 MsG0280009796.01.T01:CDS 30.0%
! TTTGGTTTCTGCATTTAACA+TGG + Chr2:58242366-58242385 MsG0280009796.01.T01:CDS 30.0%
!! TACAAACATTCTTTAGGTTG+TGG - Chr2:58243710-58243729 None:intergenic 30.0%
!!! ATAAGCGTGATTTTTTGTGA+TGG - Chr2:58242894-58242913 None:intergenic 30.0%
!!! ATTTTTTGTGATGGCTCAAA+AGG - Chr2:58242885-58242904 None:intergenic 30.0%
!!! CTCCATGCAATTTGATTTTT+TGG + Chr2:58243120-58243139 MsG0280009796.01.T01:intron 30.0%
!!! TTTTTTGTGATGGCTCAAAA+GGG - Chr2:58242884-58242903 None:intergenic 30.0%
!!! TTTTTTTTGTTGATCGTGTC+TGG + Chr2:58241587-58241606 MsG0280009796.01.T01:intron 30.0%
AATCTGTTGAGGATTAAGGA+AGG - Chr2:58242164-58242183 None:intergenic 35.0%
ACATTTAACCCTCACACTTT+AGG + Chr2:58243590-58243609 MsG0280009796.01.T01:intron 35.0%
ACTCGAAAAAGAGGTGATTA+AGG + Chr2:58241988-58242007 MsG0280009796.01.T01:CDS 35.0%
AGGGAATCATACATGCATTA+AGG - Chr2:58242865-58242884 None:intergenic 35.0%
ATCTGTTGAGGATTAAGGAA+GGG - Chr2:58242163-58242182 None:intergenic 35.0%
CAAATTGACCTAAAGTGTGA+GGG - Chr2:58243601-58243620 None:intergenic 35.0%
CAACTCAAGAACCTTAAAAC+TGG - Chr2:58242116-58242135 None:intergenic 35.0%
CAATTCAAAATCGAGGCAAA+GGG - Chr2:58243417-58243436 None:intergenic 35.0%
CTAATGCTACAACTCTTCAA+GGG - Chr2:58241914-58241933 None:intergenic 35.0%
CTTTCGTCAAAATTAAGGCT+AGG - Chr2:58241410-58241429 None:intergenic 35.0%
GAATACCAGACATGATTGAA+AGG + Chr2:58242050-58242069 MsG0280009796.01.T01:CDS 35.0%
GAGGAAATTACTCGAAAAAG+AGG + Chr2:58241979-58241998 MsG0280009796.01.T01:CDS 35.0%
GATAATTTCAGAGAGAGCTT+CGG - Chr2:58243879-58243898 None:intergenic 35.0%
GTTTGTATCAAGGGATACAA+AGG + Chr2:58243723-58243742 MsG0280009796.01.T01:CDS 35.0%
TACCGTTCAATTCAAAATCG+AGG - Chr2:58243424-58243443 None:intergenic 35.0%
TACTTAGGATGAACACAGAT+TGG + Chr2:58243015-58243034 MsG0280009796.01.T01:intron 35.0%
TCAATTCAAAATCGAGGCAA+AGG - Chr2:58243418-58243437 None:intergenic 35.0%
TCATGAAGATCTGATCTTAG+AGG + Chr2:58242420-58242439 MsG0280009796.01.T01:CDS 35.0%
TCTAATGCTACAACTCTTCA+AGG - Chr2:58241915-58241934 None:intergenic 35.0%
TCTTGTGATTATCGTTATGG+AGG + Chr2:58242028-58242047 MsG0280009796.01.T01:CDS 35.0%
TGCAAGATTGAAGTTTAGTC+TGG - Chr2:58241474-58241493 None:intergenic 35.0%
TGCTGCATTACAATTCAACT+AGG + Chr2:58242678-58242697 MsG0280009796.01.T01:intron 35.0%
TTCCAAGTGAAGTATAGTAG+AGG - Chr2:58242578-58242597 None:intergenic 35.0%
TTCCTCTACTATACTTCACT+TGG + Chr2:58242573-58242592 MsG0280009796.01.T01:intron 35.0%
! ATATAAGCTAGAAGTGCATC+AGG - Chr2:58241308-58241327 None:intergenic 35.0%
! ATGCAAGCTTTTGACAACAA+GGG + Chr2:58242513-58242532 MsG0280009796.01.T01:CDS 35.0%
! TATCCATTGATCTGAAACCT+GGG + Chr2:58243895-58243914 MsG0280009796.01.T01:CDS 35.0%
! TGAAATTTGTGGTGGCATTT+TGG + Chr2:58242543-58242562 MsG0280009796.01.T01:CDS 35.0%
! TGCCTCGATTTTGAATTGAA+CGG + Chr2:58243419-58243438 MsG0280009796.01.T01:CDS 35.0%
! TTATCCATTGATCTGAAACC+TGG + Chr2:58243894-58243913 MsG0280009796.01.T01:CDS 35.0%
!! ACTATTCAATAGGGTGTTGA+TGG - Chr2:58243053-58243072 None:intergenic 35.0%
AACTTCAATCTTGCAGTGAC+TGG + Chr2:58241479-58241498 MsG0280009796.01.T01:CDS 40.0%
ACAGGTAGATCTTGAAAGTG+AGG + Chr2:58241832-58241851 MsG0280009796.01.T01:intron 40.0%
ACTTCAATCTTGCAGTGACT+GGG + Chr2:58241480-58241499 MsG0280009796.01.T01:CDS 40.0%
ATAACCAGGTATGCTTGCTT+AGG + Chr2:58243510-58243529 MsG0280009796.01.T01:intron 40.0%
CAAAACAAACTTCCAGGGTA+AGG - Chr2:58243657-58243676 None:intergenic 40.0%
CAAGAGATGAACAATGAGAG+AGG - Chr2:58242243-58242262 None:intergenic 40.0%
CATTTCTCCACTTCCTTACA+CGG + Chr2:58241328-58241347 MsG0280009796.01.T01:CDS 40.0%
CCAAATTGACCTAAAGTGTG+AGG - Chr2:58243602-58243621 None:intergenic 40.0%
CCTCACACTTTAGGTCAATT+TGG + Chr2:58243599-58243618 MsG0280009796.01.T01:intron 40.0%
CTATATCTCTAGACAAGCCA+TGG + Chr2:58241615-58241634 MsG0280009796.01.T01:intron 40.0%
GCATTCCTTTCAATCATGTC+TGG - Chr2:58242058-58242077 None:intergenic 40.0%
GGCTTGTCTAGAGATATAGA+GGG - Chr2:58241614-58241633 None:intergenic 40.0%
TAATCCTAAGCAAGCATACC+TGG - Chr2:58243517-58243536 None:intergenic 40.0%
TATCCCAGGTTTCAGATCAA+TGG - Chr2:58243901-58243920 None:intergenic 40.0%
TCAGCCAAAACAAACTTCCA+GGG - Chr2:58243662-58243681 None:intergenic 40.0%
TCGTAGCAACTGCATGTTTA+CGG + Chr2:58243847-58243866 MsG0280009796.01.T01:CDS 40.0%
TCTTCCTCCATAACTCTGAT+TGG - Chr2:58241263-58241282 None:intergenic 40.0%
TTCAGCCAAAACAAACTTCC+AGG - Chr2:58243663-58243682 None:intergenic 40.0%
! GATGCAAGCTTTTGACAACA+AGG + Chr2:58242512-58242531 MsG0280009796.01.T01:CDS 40.0%
! TGGCTTGTCTAGAGATATAG+AGG - Chr2:58241615-58241634 None:intergenic 40.0%
!! ATGGTGGTAGCTTTGATGAT+TGG + Chr2:58243937-58243956 MsG0280009796.01.T01:CDS 40.0%
!! CTTACCCTGGAAGTTTGTTT+TGG + Chr2:58243655-58243674 MsG0280009796.01.T01:CDS 40.0%
!! GAATAATGGGTGAAGGAGAA+GGG + Chr2:58241234-58241253 MsG0280009796.01.T01:CDS 40.0%
!! GTTTTTGGATGACTGCTCAT+GGG + Chr2:58243818-58243837 MsG0280009796.01.T01:CDS 40.0%
!! TGGTGGTAGCTTTGATGATT+GGG + Chr2:58243938-58243957 MsG0280009796.01.T01:CDS 40.0%
AAGATTCATTAGTTGGGGGC+AGG - Chr2:58243483-58243502 None:intergenic 45.0%
AAGTGTGCTATCCAAGCGAT+GGG + Chr2:58241364-58241383 MsG0280009796.01.T01:CDS 45.0%
AGGGACACCAATCAGAGTTA+TGG + Chr2:58241253-58241272 MsG0280009796.01.T01:CDS 45.0%
GACACCAATCAGAGTTATGG+AGG + Chr2:58241256-58241275 MsG0280009796.01.T01:CDS 45.0%
TCTTAGAGGCCCCAAAACTT+CGG + Chr2:58242434-58242453 MsG0280009796.01.T01:CDS 45.0%
TGATTGTCTTAGGGTCATCG+AGG + Chr2:58243356-58243375 MsG0280009796.01.T01:intron 45.0%
TTTGTGATGTGAACGAGCGT+AGG + Chr2:58242341-58242360 MsG0280009796.01.T01:CDS 45.0%
! ACGTAGAACCCGAAGTTTTG+GGG - Chr2:58242446-58242465 None:intergenic 45.0%
! CACGTAGAACCCGAAGTTTT+GGG - Chr2:58242447-58242466 None:intergenic 45.0%
! TGTGAACGAGCGTAGGATTT+TGG + Chr2:58242348-58242367 MsG0280009796.01.T01:CDS 45.0%
! TTTTGCTGAAGCAGCCATGA+TGG + Chr2:58241859-58241878 MsG0280009796.01.T01:CDS 45.0%
!! GCTGAAGGAATAATGGGTGA+AGG + Chr2:58241227-58241246 MsG0280009796.01.T01:CDS 45.0%
!! GGAATAATGGGTGAAGGAGA+AGG + Chr2:58241233-58241252 MsG0280009796.01.T01:CDS 45.0%
!! GGTTTTTGGATGACTGCTCA+TGG + Chr2:58243817-58243836 MsG0280009796.01.T01:CDS 45.0%
AATGGCTGTCTTCCTTACCC+TGG + Chr2:58243642-58243661 MsG0280009796.01.T01:CDS 50.0%
ACGACTTCCGTGTAAGGAAG+TGG - Chr2:58241338-58241357 None:intergenic 50.0%
CAAGTGTGCTATCCAAGCGA+TGG + Chr2:58241363-58241382 MsG0280009796.01.T01:CDS 50.0%
CCAAGCGATGGGAATCATTG+TGG + Chr2:58241375-58241394 MsG0280009796.01.T01:CDS 50.0%
CCACAATGATTCCCATCGCT+TGG - Chr2:58241378-58241397 None:intergenic 50.0%
CTTAGAGGCCCCAAAACTTC+GGG + Chr2:58242435-58242454 MsG0280009796.01.T01:CDS 50.0%
GTTCTCACGACTTCCGTGTA+AGG - Chr2:58241344-58241363 None:intergenic 50.0%
TGCCTGAGAGTTGTGCAAGT+GGG + Chr2:58241939-58241958 MsG0280009796.01.T01:CDS 50.0%
TGTGCAAGTGGGGATGTTGT+GGG + Chr2:58241950-58241969 MsG0280009796.01.T01:CDS 50.0%
TTGCCTGAGAGTTGTGCAAG+TGG + Chr2:58241938-58241957 MsG0280009796.01.T01:CDS 50.0%
TTGTGCAAGTGGGGATGTTG+TGG + Chr2:58241949-58241968 MsG0280009796.01.T01:CDS 50.0%
TTGTGGCTGACACACCTACA+CGG - Chr2:58243693-58243712 None:intergenic 50.0%
! GCACGTAGAACCCGAAGTTT+TGG - Chr2:58242448-58242467 None:intergenic 50.0%
! GGTCATCGAGGTTCTAGCAT+GGG + Chr2:58243368-58243387 MsG0280009796.01.T01:CDS 50.0%
!! TAGGGTGTTGATGGCGTACT+AGG - Chr2:58243044-58243063 None:intergenic 50.0%
GCCTGAGAGTTGTGCAAGTG+GGG + Chr2:58241940-58241959 MsG0280009796.01.T01:CDS 55.0%
GGCTGAAAAGAGACCCGTGT+AGG + Chr2:58243676-58243695 MsG0280009796.01.T01:CDS 55.0%
GTGCAAGTGGGGATGTTGTG+GGG + Chr2:58241951-58241970 MsG0280009796.01.T01:CDS 55.0%
TCCCCACTTGCACAACTCTC+AGG - Chr2:58241944-58241963 None:intergenic 55.0%
TGCAGTGACTGGGCAACGTA+AGG + Chr2:58241490-58241509 MsG0280009796.01.T01:CDS 55.0%
TGTGGCTGACACACCTACAC+GGG - Chr2:58243692-58243711 None:intergenic 55.0%
! GGGTCATCGAGGTTCTAGCA+TGG + Chr2:58243367-58243386 MsG0280009796.01.T01:intron 55.0%
CAAGTGGGGATGTTGTGGGG+TGG + Chr2:58241954-58241973 MsG0280009796.01.T01:CDS 60.0%
GGGATGTTGTGGGGTGGATG+AGG + Chr2:58241960-58241979 MsG0280009796.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 58241224 58243977 58241224 ID=MsG0280009796.01;Name=MsG0280009796.01
Chr2 mRNA 58241224 58243977 58241224 ID=MsG0280009796.01.T01;Parent=MsG0280009796.01;Name=MsG0280009796.01.T01;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|4|0|510
Chr2 exon 58241224 58241511 58241224 ID=MsG0280009796.01.T01:exon:22494;Parent=MsG0280009796.01.T01
Chr2 exon 58241836 58242564 58241836 ID=MsG0280009796.01.T01:exon:22495;Parent=MsG0280009796.01.T01
Chr2 exon 58243368 58243517 58243368 ID=MsG0280009796.01.T01:exon:22496;Parent=MsG0280009796.01.T01
Chr2 exon 58243612 58243977 58243612 ID=MsG0280009796.01.T01:exon:22497;Parent=MsG0280009796.01.T01
Chr2 CDS 58241224 58241511 58241224 ID=MsG0280009796.01.T01:cds;Parent=MsG0280009796.01.T01
Chr2 CDS 58241836 58242564 58241836 ID=MsG0280009796.01.T01:cds;Parent=MsG0280009796.01.T01
Chr2 CDS 58243368 58243517 58243368 ID=MsG0280009796.01.T01:cds;Parent=MsG0280009796.01.T01
Chr2 CDS 58243612 58243977 58243612 ID=MsG0280009796.01.T01:cds;Parent=MsG0280009796.01.T01
Gene Sequence

>MsG0280009796.01.T01

ATGGCTGAAGGAATAATGGGTGAAGGAGAAGGGACACCAATCAGAGTTATGGAGGAAGAAGAAGATGTGATCAGCAATCTTCCTGATGCACTTCTAGCTTATATCATTTCTCCACTTCCTTACACGGAAGTCGTGAGAACAAGTGTGCTATCCAAGCGATGGGAATCATTGTGGAAACACACTCCTAGCCTTAATTTTGACGAAAGACAAATGTTAAAGTCATTGATCAAAGAAAACAATCAAAATTCCAGACTAAACTTCAATCTTGCAGTGACTGGGCAACGTAAGGTAGATCTTGAAAGTGAGGAACTTTTTGCTGAAGCAGCCATGATGGTTACATCAAATATCGACAATCATATTGGTCCCTTGAAGAGTTGTAGCATTAGACACTTGCCTGAGAGTTGTGCAAGTGGGGATGTTGTGGGGTGGATGAGGAAATTACTCGAAAAAGAGGTGATTAAGGTTTCAATAGAACGTGATTCTTGTGATTATCGTTATGGAGGAATACCAGACATGATTGAAAGGAATGCTGCATCAACCATTGATTTACCTTTTGAAGTTTTCTCCAGTTTTAAGGTTCTTGAGTTGAAGAACTATCATTTTTTAACTACACCCTTCCTTAATCCTCAACAGATTTTGAATACTCTTACTCTTAACAAAGTGCATATTATATCTAACACTTTTCATGATATCCTCTCTCATTGTTCATCTCTTGAAAATCTTATCCTTGAGAAATGTGATTTCTTAACAGATGAGGTTAAGATTGTAAGTCCAAGCCTTAAATATATTAAGATTTGTGATGTGAACGAGCGTAGGATTTTGGTTTCTGCATTTAACATGGAAGTCATAGAGATTGACTCCGTTATTTGTAATCATGAAGATCTGATCTTAGAGGCCCCAAAACTTCGGGTTCTACGTGCTTACAATAATGTTCAAATGCTTGGACAAAATGTTTTTATAGATGGATGCAAGCTTTTGACAACAAGGGATATTATTGAAATTTGTGGTGGCATTTTGGGTCATCGAGGTTCTAGCATGGGAAGTATCTTTAAAAATTTGGTTACCCTTTGCCTCGATTTTGAATTGAACGGTAATAGAAATGTCATAGCTCTTTCTTTTGCACTCAAGTCCTGCCCCCAACTAATGAATCTTCAAATAAATAACCAGGTCAATTTGGATTACTATGATCAAAATGACAATGGCTGTCTTCCTTACCCTGGAAGTTTGTTTTGGCTGAAAAGAGACCCGTGTAGGTGTGTCAGCCACAACCTAAAGAATGTTTGTATCAAGGGATACAAAGGTGAAGAGTTTGAAATTGAATTTGTTAAGTACTTAATATTAAATGGAGGAGTTCTGAATAATATTACAATTTGGTTTTTGGATGACTGCTCATGGGATGACGTCGTAGCAACTGCATGTTTACGGTCATATCCGAAGCTCTCTCTGAAATTATCCATTGATCTGAAACCTGGGATAGAGTATATAAGAAAATATGGTGGTAGCTTTGATGATTGGGTCCGAACCCTAAAATAA
Protein sequence

>MsG0280009796.01.T01

MAEGIMGEGEGTPIRVMEEEEDVISNLPDALLAYIISPLPYTEVVRTSVLSKRWESLWKHTPSLNFDERQMLKSLIKENNQNSRLNFNLAVTGQRKVDLESEELFAEAAMMVTSNIDNHIGPLKSCSIRHLPESCASGDVVGWMRKLLEKEVIKVSIERDSCDYRYGGIPDMIERNAASTIDLPFEVFSSFKVLELKNYHFLTTPFLNPQQILNTLTLNKVHIISNTFHDILSHCSSLENLILEKCDFLTDEVKIVSPSLKYIKICDVNERRILVSAFNMEVIEIDSVICNHEDLILEAPKLRVLRAYNNVQMLGQNVFIDGCKLLTTRDIIEICGGILGHRGSSMGSIFKNLVTLCLDFELNGNRNVIALSFALKSCPQLMNLQINNQVNLDYYDQNDNGCLPYPGSLFWLKRDPCRCVSHNLKNVCIKGYKGEEFEIEFVKYLILNGGVLNNITIWFLDDCSWDDVVATACLRSYPKLSLKLSIDLKPGIEYIRKYGGSFDDWVRTLK*