AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010189.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010189.01.T01 MTR_7g111750 87.273 55 6 1 1 54 1 55 6.33e-20 80.9
MsG0280010189.01.T01 MTR_7g111750 87.273 55 6 1 1 54 11 65 8.48e-20 80.9
MsG0280010189.01.T01 MTR_2g058400 88.679 53 5 1 1 52 101 153 8.42e-17 73.2
MsG0280010189.01.T02 MTR_7g111750 87.273 55 6 1 1 54 1 55 6.33e-20 80.9
MsG0280010189.01.T02 MTR_7g111750 87.273 55 6 1 1 54 11 65 8.48e-20 80.9
MsG0280010189.01.T02 MTR_2g058400 88.679 53 5 1 1 52 101 153 8.42e-17 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 62 sgRNAs with CRISPR-Local

Find 449 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAAATTGGAATGAAATT+AGG 0.177408 2:-65905789 None:intergenic
GAGGCGAATTGGATTGAAAT+TGG 0.240500 2:-65905801 None:intergenic
TTGAAATTGGAATGAAATTA+GGG 0.258785 2:-65905788 None:intergenic
GATTCTCACTCTTCTTCTTC+TGG 0.299689 2:+65905897 MsG0280010189.01.T01:five_prime_UTR
TGGGTTTGAATTGGTGAAAA+TGG 0.302041 2:-65907457 None:intergenic
TGCAATATCAAGTAGGAAAA+AGG 0.311544 2:+65907651 MsG0280010189.01.T01:three_prime_UTR
TAAGAGAAGAAGAGGCGAAT+TGG 0.330707 2:-65905812 None:intergenic
CTTGCAGGCATCTCCGAATA+GGG 0.348051 2:-65907326 None:intergenic
ACATATTGTTTGGTTACATT+AGG 0.357054 2:+65907280 MsG0280010189.01.T01:intron
ACTAGACCTAACATATTGTT+TGG 0.363364 2:+65907270 MsG0280010189.01.T01:intron
TTTGATGTGATCGTCTTGTT+TGG 0.369838 2:-65907524 None:intergenic
ATGAAATTAGGGTTTAGAAA+AGG 0.379726 2:-65905777 None:intergenic
GCTTGCAGGCATCTCCGAAT+AGG 0.390543 2:-65907327 None:intergenic
TTTAGAAAAGGGTTGGTTCA+TGG 0.392481 2:-65905765 None:intergenic
TTGTTTGGTTACATTAGGTT+TGG 0.397376 2:+65907285 MsG0280010189.01.T01:intron
ATAATGTTGGTTGTGATTGC+CGG 0.397607 2:-65907356 None:intergenic
ATTCAAACCCACATCTGCTT+TGG 0.400238 2:+65907469 MsG0280010189.01.T01:CDS
TGAAATTAGGGTTTAGAAAA+GGG 0.405570 2:-65905776 None:intergenic
TCACCATGCACACCCCTATT+CGG 0.406961 2:+65907313 MsG0280010189.01.T01:exon
AAATCAATGAGGTCGCATTT+CGG 0.414500 2:-65905871 None:intergenic
GAAGCAGAAGCAGAATCTAT+TGG 0.433129 2:+65907694 MsG0280010189.01.T01:three_prime_UTR
GAGAGTGAGCGGAGAGATGA+TGG 0.443329 2:-65907393 None:intergenic
ATTGCCGGGTTAACGCTTGC+AGG 0.460624 2:-65907341 None:intergenic
GGGTGATGAAATGTTATGAT+TGG 0.464180 2:-65907430 None:intergenic
AAGCAGATGTGGGTTTGAAT+TGG 0.472244 2:-65907466 None:intergenic
AGTGAGAATAAGAGAAGAAG+AGG 0.478429 2:-65905820 None:intergenic
TACCTTAGGAATCGTAGAAT+AGG 0.478655 2:-65905944 None:intergenic
ACTGCAAAAGCAGGCTCGTA+TGG 0.497168 2:-65907763 None:intergenic
ATTAGGGTTTAGAAAAGGGT+TGG 0.503745 2:-65905772 None:intergenic
GGGTTTGAATTGGTGAAAAT+GGG 0.505477 2:-65907456 None:intergenic
GGTGTACACGGCAGAGGAGA+AGG 0.505897 2:+65907672 MsG0280010189.01.T01:three_prime_UTR
CCCACATCTGCTTTGGACAA+TGG 0.526642 2:+65907476 MsG0280010189.01.T01:CDS
ACCTGAACAACTGCAAAAGC+AGG 0.532085 2:-65907772 None:intergenic
CACCTATTCTACGATTCCTA+AGG 0.534933 2:+65905942 MsG0280010189.01.T01:five_prime_UTR
TAATGTTGGTTGTGATTGCC+GGG 0.536832 2:-65907355 None:intergenic
GCCATTGTCCAAAGCAGATG+TGG 0.542293 2:-65907477 None:intergenic
AAGCAGCCACGGAGAGTGAG+CGG 0.553313 2:-65907404 None:intergenic
GATGATTATGATGAAGAGGA+GGG 0.554735 2:+65907598 MsG0280010189.01.T01:three_prime_UTR
GGTGATGAAATGTTATGATT+GGG 0.556837 2:-65907429 None:intergenic
GATGCCTGCAAGCGTTAACC+CGG 0.560903 2:+65907337 MsG0280010189.01.T01:CDS
CAAGACGATCACATCAAAGA+AGG 0.567225 2:+65907529 MsG0280010189.01.T01:CDS
CGATGATGATTATGATGAAG+AGG 0.570859 2:+65907594 MsG0280010189.01.T01:three_prime_UTR
TCTATTGGATACAAAGTGGT+GGG 0.577210 2:+65907709 MsG0280010189.01.T01:three_prime_UTR
TGATGATTATGATGAAGAGG+AGG 0.585137 2:+65907597 MsG0280010189.01.T01:three_prime_UTR
TTGAATTGGTGAAAATGGGA+AGG 0.590347 2:-65907452 None:intergenic
GAATTGGTGAAAATGGGAAG+GGG 0.591469 2:-65907450 None:intergenic
ATCTATTGGATACAAAGTGG+TGG 0.598514 2:+65907708 MsG0280010189.01.T01:three_prime_UTR
CCATTGTCCAAAGCAGATGT+GGG 0.598831 2:-65907476 None:intergenic
TCTCCGAATAGGGGTGTGCA+TGG 0.600023 2:-65907316 None:intergenic
TGAATTGGTGAAAATGGGAA+GGG 0.601633 2:-65907451 None:intergenic
ATCTCTCCGCTCACTCTCCG+TGG 0.616475 2:+65907398 MsG0280010189.01.T01:CDS
ATACTGTTGCAATATCAAGT+AGG 0.617463 2:+65907644 MsG0280010189.01.T01:three_prime_UTR
AGAGTGAGCGGAGAGATGAT+GGG 0.624543 2:-65907392 None:intergenic
TTGCAGGCATCTCCGAATAG+GGG 0.629614 2:-65907325 None:intergenic
AGAATCTATTGGATACAAAG+TGG 0.634096 2:+65907705 MsG0280010189.01.T01:three_prime_UTR
TGCTTTGGACAATGGCACCA+CGG 0.637604 2:+65907484 MsG0280010189.01.T01:CDS
ATGATTGGGAAAAGCAGCCA+CGG 0.640801 2:-65907415 None:intergenic
CTATTGGATACAAAGTGGTG+GGG 0.651590 2:+65907710 MsG0280010189.01.T01:three_prime_UTR
AAGAAGAGAAATAGCGTCCG+TGG 0.656637 2:-65907501 None:intergenic
TCGAAGCTAGTTCACATGAA+CGG 0.662858 2:+65905846 MsG0280010189.01.T01:five_prime_UTR
TCTTTGAAGAGAGATAATGT+TGG 0.695128 2:-65907369 None:intergenic
TGAGAATCGCAAAATCAATG+AGG 0.707989 2:-65905882 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAATAATATTTTAT+CGG - Chr2:65909814-65909833 None:intergenic 0.0%
!! AATCTTATTAAATACTTAAT+TGG + Chr2:65908424-65908443 MsG0280010189.01.T01:intron 10.0%
!!! ATATCAAATTTATTTTTAAC+TGG - Chr2:65908675-65908694 None:intergenic 10.0%
!!! TAATTTTTTATTCAATGTTT+GGG + Chr2:65906908-65906927 MsG0280010189.01.T01:intron 10.0%
!!! TTAATTTTTTATTCAATGTT+TGG + Chr2:65906907-65906926 MsG0280010189.01.T01:intron 10.0%
!!! TTTATATTTTCTTTTTGTTA+TGG + Chr2:65908481-65908500 MsG0280010189.01.T01:intron 10.0%
!!! TTTATTTGATTTTTGTTTTT+GGG + Chr2:65906038-65906057 MsG0280010189.01.T01:intron 10.0%
!!! TTTTATTTGATTTTTGTTTT+TGG + Chr2:65906037-65906056 MsG0280010189.01.T01:intron 10.0%
!! AAAAAAAAAAATCCTTTCTT+TGG + Chr2:65912338-65912357 MsG0280010189.01.T01:three_prime_UTR 15.0%
!! AAAAAATTAAAGTTGAGAAA+AGG - Chr2:65906897-65906916 None:intergenic 15.0%
!! AAAAATTAAAGTTGAGAAAA+GGG - Chr2:65906896-65906915 None:intergenic 15.0%
!! AAATTCAATAGGAAAAATAA+TGG - Chr2:65910429-65910448 None:intergenic 15.0%
!! AGAAAATTCATTCAAATTTA+AGG - Chr2:65906280-65906299 None:intergenic 15.0%
!! TTTGCTGAATTTAAATTAAA+TGG + Chr2:65909041-65909060 MsG0280010189.01.T01:intron 15.0%
!!! AAAATTCAAAATTTTGGTTT+CGG + Chr2:65906692-65906711 MsG0280010189.01.T01:intron 15.0%
!!! AAACCTTATTTAAGAATAAA+CGG - Chr2:65912394-65912413 None:intergenic 15.0%
!!! AATACAAGTTTATTTTAACT+TGG + Chr2:65911839-65911858 MsG0280010189.01.T01:intron 15.0%
!!! AATTCATCAACATTTTATTA+AGG - Chr2:65910345-65910364 None:intergenic 15.0%
!!! ATAGAGTAGTTTATTTATTT+TGG + Chr2:65907120-65907139 MsG0280010189.01.T01:intron 15.0%
!!! ATATGTTTTTTAAATTCTCA+CGG + Chr2:65911288-65911307 MsG0280010189.01.T01:intron 15.0%
!!! ATATTACATTTTCATATGTT+GGG + Chr2:65909512-65909531 MsG0280010189.01.T01:intron 15.0%
!!! ATATTTTTCTTAGATAAAAG+AGG - Chr2:65911482-65911501 None:intergenic 15.0%
!!! ATTTTTCCTATTGAATTTAA+GGG + Chr2:65910431-65910450 MsG0280010189.01.T01:intron 15.0%
!!! CTTTTAATTTTCTCAAAAAT+AGG - Chr2:65908871-65908890 None:intergenic 15.0%
!!! TAAGGTATAAATTTGTTTAT+GGG + Chr2:65905960-65905979 MsG0280010189.01.T01:intron 15.0%
!!! TATTTTTCCTATTGAATTTA+AGG + Chr2:65910430-65910449 MsG0280010189.01.T01:intron 15.0%
!!! TATTTTTCTTAGATAAAAGA+GGG - Chr2:65911481-65911500 None:intergenic 15.0%
!!! TCTTTTATCTAAGAAAAATA+TGG + Chr2:65911481-65911500 MsG0280010189.01.T01:intron 15.0%
!!! TTTTAAAATCTCAAGATTAT+AGG - Chr2:65911211-65911230 None:intergenic 15.0%
!!! TTTTTGTTTCTTCTTATATA+CGG + Chr2:65911724-65911743 MsG0280010189.01.T01:intron 15.0%
!! AAAAAATTGTGTACAGAATA+TGG + Chr2:65910037-65910056 MsG0280010189.01.T01:intron 20.0%
!! AAAAATTGTGTACAGAATAT+GGG + Chr2:65910038-65910057 MsG0280010189.01.T01:intron 20.0%
!! AAAATTAAAGTTGAGAAAAG+GGG - Chr2:65906895-65906914 None:intergenic 20.0%
!! AATCCGTTTATTCTTAAATA+AGG + Chr2:65912388-65912407 MsG0280010189.01.T01:three_prime_UTR 20.0%
!! AATTTGACATGATTTACAAT+GGG + Chr2:65908239-65908258 MsG0280010189.01.T01:intron 20.0%
!! ATAAATTTGAAGAATCCATA+AGG - Chr2:65906463-65906482 None:intergenic 20.0%
!! ATTGAAATTGGAATGAAATT+AGG - Chr2:65905792-65905811 None:intergenic 20.0%
!! ATTTGTATATATGAGAATAC+TGG + Chr2:65907998-65908017 MsG0280010189.01.T01:intron 20.0%
!! CAAAGAAGTTTATTAAAAAG+AGG - Chr2:65911789-65911808 None:intergenic 20.0%
!! CAACATATGAAAATGTAATA+TGG - Chr2:65909513-65909532 None:intergenic 20.0%
!! CATAAACAAATTTATACCTT+AGG - Chr2:65905961-65905980 None:intergenic 20.0%
!! CATTGTTTAAAAACTAAAAG+AGG - Chr2:65910579-65910598 None:intergenic 20.0%
!! CTAACAATTAAATTCGTAAA+AGG + Chr2:65906666-65906685 MsG0280010189.01.T01:intron 20.0%
!! GAAAAATAATTGTTTGAACT+TGG - Chr2:65906490-65906509 None:intergenic 20.0%
!! TAAACATAGAAAAAGATATC+AGG - Chr2:65911567-65911586 None:intergenic 20.0%
!! TATACATTTAAACAACATCT+TGG - Chr2:65907018-65907037 None:intergenic 20.0%
!! TATATTGTAGTTACAGTTAA+TGG - Chr2:65910868-65910887 None:intergenic 20.0%
!! TATTCTTAAATAAGGTTTCA+AGG + Chr2:65912396-65912415 MsG0280010189.01.T01:three_prime_UTR 20.0%
!! TTAAGGATAACTAATATTGA+AGG + Chr2:65912119-65912138 MsG0280010189.01.T01:three_prime_UTR 20.0%
!! TTGAAATTGGAATGAAATTA+GGG - Chr2:65905791-65905810 None:intergenic 20.0%
!! TTGATATTAATTCTTCTTGA+TGG + Chr2:65912068-65912087 MsG0280010189.01.T01:intron 20.0%
!! TTGTTTGAGGAATTAATAAA+CGG + Chr2:65910480-65910499 MsG0280010189.01.T01:intron 20.0%
!! TTTGTATATATGAGAATACT+GGG + Chr2:65907999-65908018 MsG0280010189.01.T01:intron 20.0%
!!! AATAATTTTCTATCTTTGCT+AGG - Chr2:65909103-65909122 None:intergenic 20.0%
!!! ACGCGAATTTTTTTAAATTT+AGG + Chr2:65909313-65909332 MsG0280010189.01.T01:three_prime_UTR 20.0%
!!! AGGACTAAAATTCAAAATTT+TGG + Chr2:65906686-65906705 MsG0280010189.01.T01:intron 20.0%
!!! ATGTTTTTTGAGTTTGTTTT+TGG + Chr2:65905986-65906005 MsG0280010189.01.T01:intron 20.0%
!!! ATTAGTGTTTCTATATTGTT+TGG + Chr2:65906239-65906258 MsG0280010189.01.T01:intron 20.0%
!!! ATTATTTTCAAGAAAAGAGA+AGG + Chr2:65911965-65911984 MsG0280010189.01.T01:three_prime_UTR 20.0%
!!! ATTTTATTAAGGAAAAACAC+TGG - Chr2:65910334-65910353 None:intergenic 20.0%
!!! CATATTACATTTTCATATGT+TGG + Chr2:65909511-65909530 MsG0280010189.01.T01:intron 20.0%
!!! CTAAGGTATAAATTTGTTTA+TGG + Chr2:65905959-65905978 MsG0280010189.01.T01:intron 20.0%
!!! GTATCAATTTACATTTTCTT+CGG + Chr2:65907142-65907161 MsG0280010189.01.T01:intron 20.0%
!!! TAAGAAAAATATGGAGTTTT+GGG + Chr2:65911490-65911509 MsG0280010189.01.T01:intron 20.0%
!!! TAATCATGATTTTGGAATTA+CGG - Chr2:65907088-65907107 None:intergenic 20.0%
!!! TATCAATTTACATTTTCTTC+GGG + Chr2:65907143-65907162 MsG0280010189.01.T01:intron 20.0%
!!! TCATGGTTTTGAAATAAATA+CGG - Chr2:65907042-65907061 None:intergenic 20.0%
!!! TGTTTTTTGAGTTTGTTTTT+GGG + Chr2:65905987-65906006 MsG0280010189.01.T01:intron 20.0%
!!! TTTAAATTTAGGATACGATA+CGG + Chr2:65909324-65909343 MsG0280010189.01.T01:three_prime_UTR 20.0%
!!! TTTGTTTGATTTTTGTTTCT+AGG + Chr2:65906067-65906086 MsG0280010189.01.T01:intron 20.0%
! AAAAAAAATTCTACGTTGAG+TGG + Chr2:65911061-65911080 MsG0280010189.01.T01:intron 25.0%
! AAACATTTAATGAATCTCCT+TGG + Chr2:65911693-65911712 MsG0280010189.01.T01:intron 25.0%
! AAAGTGCACAAATTTCATTT+AGG + Chr2:65912495-65912514 MsG0280010189.01.T01:three_prime_UTR 25.0%
! AAATTAAAGTTGAGAAAAGG+GGG - Chr2:65906894-65906913 None:intergenic 25.0%
! AACAATAAACTTAACCCAAA+AGG - Chr2:65906138-65906157 None:intergenic 25.0%
! AAGAGATCAATGTTTATTCT+TGG + Chr2:65912423-65912442 MsG0280010189.01.T01:three_prime_UTR 25.0%
! AAGGAGATTCATTAAATGTT+TGG - Chr2:65911694-65911713 None:intergenic 25.0%
! ACATATTGTTTGGTTACATT+AGG + Chr2:65907280-65907299 MsG0280010189.01.T01:intron 25.0%
! AGAAGTTTATTAAAAAGAGG+AGG - Chr2:65911786-65911805 None:intergenic 25.0%
! ATGAAATTAGGGTTTAGAAA+AGG - Chr2:65905780-65905799 None:intergenic 25.0%
! ATGTAACCAAACAATATGTT+AGG - Chr2:65907279-65907298 None:intergenic 25.0%
! CAATTTGACATGATTTACAA+TGG + Chr2:65908238-65908257 MsG0280010189.01.T01:intron 25.0%
! GAAAACATATTATCTATGAC+TGG + Chr2:65909990-65910009 MsG0280010189.01.T01:intron 25.0%
! GACATAAATATAGCAATTAC+CGG - Chr2:65912248-65912267 None:intergenic 25.0%
! TAAATGTATGCAATGAATCA+TGG - Chr2:65907059-65907078 None:intergenic 25.0%
! TATTAATTCTTCTTGATGGA+TGG + Chr2:65912072-65912091 MsG0280010189.01.T01:intron 25.0%
! TGAAATTAGGGTTTAGAAAA+GGG - Chr2:65905779-65905798 None:intergenic 25.0%
! TGTTTGAGGAATTAATAAAC+GGG + Chr2:65910481-65910500 MsG0280010189.01.T01:intron 25.0%
! TTCAGTGTAATTATATGTGT+CGG - Chr2:65911376-65911395 None:intergenic 25.0%
! TTGAAATAAAGCTACACAAA+TGG - Chr2:65908331-65908350 None:intergenic 25.0%
!! AAACCATTTAAATCTAAAGC+CGG - Chr2:65908218-65908237 None:intergenic 25.0%
!! AACTTGTATTCTCTTTTTAC+AGG - Chr2:65911829-65911848 None:intergenic 25.0%
!! AAGAAAAATATGGAGTTTTG+GGG + Chr2:65911491-65911510 MsG0280010189.01.T01:intron 25.0%
!! AATCATCTACATCTTTTGAT+TGG - Chr2:65910645-65910664 None:intergenic 25.0%
!! ATATTGCAGCATATTTCTAT+TGG + Chr2:65908387-65908406 MsG0280010189.01.T01:intron 25.0%
!! ATCAATTTAAAGTGAGCAAT+GGG + Chr2:65907890-65907909 MsG0280010189.01.T01:three_prime_UTR 25.0%
!! CTAAGAAAAATATGGAGTTT+TGG + Chr2:65911489-65911508 MsG0280010189.01.T01:intron 25.0%
!! GAATTTAAGAAGGAACATTT+TGG + Chr2:65909959-65909978 MsG0280010189.01.T01:intron 25.0%
!! TACATAGTGTATCTAAAACT+AGG - Chr2:65908361-65908380 None:intergenic 25.0%
!! TATAGACATGATAATGACTA+AGG + Chr2:65910833-65910852 MsG0280010189.01.T01:intron 25.0%
!! TTCTAAAAAATTAGCTGTGT+CGG + Chr2:65911406-65911425 MsG0280010189.01.T01:intron 25.0%
!! TTGTTTGGACTTGTTTAATT+AGG + Chr2:65906254-65906273 MsG0280010189.01.T01:intron 25.0%
!! TTTTACTCTTCATCTTTTCT+AGG + Chr2:65909726-65909745 MsG0280010189.01.T01:intron 25.0%
!!! AAACATTCCATTGCATTTTT+TGG + Chr2:65908524-65908543 MsG0280010189.01.T01:three_prime_UTR 25.0%
!!! AAGTTTATTTTAACTTGGAG+GGG + Chr2:65911844-65911863 MsG0280010189.01.T01:intron 25.0%
!!! ACAAGTTTATTTTAACTTGG+AGG + Chr2:65911842-65911861 MsG0280010189.01.T01:intron 25.0%
!!! ATCTTTTGATTACTTGTTTC+AGG - Chr2:65906540-65906559 None:intergenic 25.0%
!!! CAAGTTTATTTTAACTTGGA+GGG + Chr2:65911843-65911862 MsG0280010189.01.T01:intron 25.0%
!!! CTAATTTTGAGAGTAGAAAT+GGG + Chr2:65908709-65908728 MsG0280010189.01.T01:intron 25.0%
!!! CTTTTATTTGCGAAGTATTT+TGG + Chr2:65907970-65907989 MsG0280010189.01.T01:intron 25.0%
!!! GAATCTTGTTTTAAGGAATT+TGG + Chr2:65908105-65908124 MsG0280010189.01.T01:intron 25.0%
!!! GTCTAGTTTTTAAAAGCATT+TGG - Chr2:65907257-65907276 None:intergenic 25.0%
!!! TCTAATTTTGAGAGTAGAAA+TGG + Chr2:65908708-65908727 MsG0280010189.01.T01:intron 25.0%
!!! TTTTGTTTCTGGTATGATTT+TGG + Chr2:65906112-65906131 MsG0280010189.01.T01:intron 25.0%
AAAATGCAATCAACAGTCTT+TGG - Chr2:65908992-65909011 None:intergenic 30.0%
AATCCATAAGGTTACTGTTA+TGG - Chr2:65906451-65906470 None:intergenic 30.0%
AATTGTTAGCACCAAAAAAC+TGG - Chr2:65906655-65906674 None:intergenic 30.0%
ACTAGACCTAACATATTGTT+TGG + Chr2:65907270-65907289 MsG0280010189.01.T01:intron 30.0%
ACTAGATGAACTATTTCCTA+AGG + Chr2:65911748-65911767 MsG0280010189.01.T01:intron 30.0%
AGAATCTATTGGATACAAAG+TGG + Chr2:65907705-65907724 MsG0280010189.01.T01:three_prime_UTR 30.0%
AGTCAGTTGTAATATTGAAG+TGG + Chr2:65910280-65910299 MsG0280010189.01.T01:intron 30.0%
ATAACTGTATAACCTGGAAT+GGG + Chr2:65910124-65910143 MsG0280010189.01.T01:intron 30.0%
ATAAGCCAAACTATTAAGAC+CGG + Chr2:65908196-65908215 MsG0280010189.01.T01:intron 30.0%
ATACTGTTGCAATATCAAGT+AGG + Chr2:65907644-65907663 MsG0280010189.01.T01:three_prime_UTR 30.0%
ATATAGCATATGTTGTGCTA+AGG + Chr2:65906184-65906203 MsG0280010189.01.T01:intron 30.0%
ATGAAACGTAAAACTGAAAG+AGG - Chr2:65908760-65908779 None:intergenic 30.0%
ATGTATTTATTCTCCATGAG+TGG + Chr2:65911622-65911641 MsG0280010189.01.T01:intron 30.0%
ATTCCAGGTTATACAGTTAT+CGG - Chr2:65910124-65910143 None:intergenic 30.0%
ATTGTGTTCAGAATTCCAAA+TGG + Chr2:65911019-65911038 MsG0280010189.01.T01:intron 30.0%
ATTGTTAGCACCAAAAAACT+GGG - Chr2:65906654-65906673 None:intergenic 30.0%
ATTTACAATGGGATATTGTG+GGG + Chr2:65908250-65908269 MsG0280010189.01.T01:intron 30.0%
CAAAATCATGATTACTTCGT+TGG + Chr2:65907094-65907113 MsG0280010189.01.T01:intron 30.0%
CCACATCATAATTAAGATCA+TGG - Chr2:65909248-65909267 None:intergenic 30.0%
CCATGATCTTAATTATGATG+TGG + Chr2:65909245-65909264 MsG0280010189.01.T01:intron 30.0%
CTAGATGAACTATTTCCTAA+GGG + Chr2:65911749-65911768 MsG0280010189.01.T01:intron 30.0%
GAGGGTAATTAAATAGTTAG+AGG + Chr2:65908157-65908176 MsG0280010189.01.T01:intron 30.0%
GATTTACAATGGGATATTGT+GGG + Chr2:65908249-65908268 MsG0280010189.01.T01:intron 30.0%
GGTAATTAACTATGTCCTAT+TGG - Chr2:65906957-65906976 None:intergenic 30.0%
GGTGATGAAATGTTATGATT+GGG - Chr2:65907432-65907451 None:intergenic 30.0%
GTGAATACGTAAGACAAATA+AGG + Chr2:65908030-65908049 MsG0280010189.01.T01:intron 30.0%
TAAAGTTCAAGAAAGAAGAG+TGG + Chr2:65909133-65909152 MsG0280010189.01.T01:intron 30.0%
TAATTAATTCCGATACTTCG+TGG + Chr2:65909836-65909855 MsG0280010189.01.T01:intron 30.0%
TACAATATAAGAGAGAACAG+AGG + Chr2:65910879-65910898 MsG0280010189.01.T01:intron 30.0%
TACGTAAGACAAATAAGGAT+TGG + Chr2:65908035-65908054 MsG0280010189.01.T01:intron 30.0%
TATATATGAGAATACTGGGA+TGG + Chr2:65908003-65908022 MsG0280010189.01.T01:intron 30.0%
TATGGGAAACATGAATATGT+AGG + Chr2:65910055-65910074 MsG0280010189.01.T01:intron 30.0%
TATTGAAGTGGTAGAATTAG+TGG + Chr2:65910292-65910311 MsG0280010189.01.T01:intron 30.0%
TCAAAAGATGTAGATGATTG+AGG + Chr2:65910646-65910665 MsG0280010189.01.T01:intron 30.0%
TCAGTTAACATAAAACAACG+CGG + Chr2:65911159-65911178 MsG0280010189.01.T01:intron 30.0%
TCCAATATGATTGCAATGAT+AGG - Chr2:65908815-65908834 None:intergenic 30.0%
TCCTATCATTGCAATCATAT+TGG + Chr2:65908811-65908830 MsG0280010189.01.T01:intron 30.0%
TGAAACGTAAAACTGAAAGA+GGG - Chr2:65908759-65908778 None:intergenic 30.0%
TGATTTACAATGGGATATTG+TGG + Chr2:65908248-65908267 MsG0280010189.01.T01:intron 30.0%
TGCAATATCAAGTAGGAAAA+AGG + Chr2:65907651-65907670 MsG0280010189.01.T01:three_prime_UTR 30.0%
TTGTATTATGATGCAACTTC+TGG + Chr2:65907182-65907201 MsG0280010189.01.T01:intron 30.0%
TTGTTTGGTTACATTAGGTT+TGG + Chr2:65907285-65907304 MsG0280010189.01.T01:intron 30.0%
TTTGAACCATTTCAACACTT+TGG + Chr2:65906815-65906834 MsG0280010189.01.T01:intron 30.0%
! AAACGTTGTCATTCTTTTGT+AGG - Chr2:65907738-65907757 None:intergenic 30.0%
! AACGTTGTCATTCTTTTGTA+GGG - Chr2:65907737-65907756 None:intergenic 30.0%
! AACTATGTCCTATTGGTAAT+TGG - Chr2:65906950-65906969 None:intergenic 30.0%
! ACTCATTTTACCCTTATATC+AGG + Chr2:65911925-65911944 MsG0280010189.01.T01:intron 30.0%
! ACTTGCTAAAACCTCAATTT+GGG + Chr2:65911107-65911126 MsG0280010189.01.T01:intron 30.0%
! AGTTTTTAAACAATGCCTCA+AGG + Chr2:65910584-65910603 MsG0280010189.01.T01:intron 30.0%
! ATATTATCTATGACTGGTCA+TGG + Chr2:65909996-65910015 MsG0280010189.01.T01:intron 30.0%
! ATGGTTGTTTATCTCAGTTT+TGG - Chr2:65909200-65909219 None:intergenic 30.0%
! ATTTTGCGAAGTGAATGATA+AGG + Chr2:65907939-65907958 MsG0280010189.01.T01:three_prime_UTR 30.0%
! CAACGAAGTAATCATGATTT+TGG - Chr2:65907096-65907115 None:intergenic 30.0%
! CATCAATTTAAAGTGAGCAA+TGG + Chr2:65907889-65907908 MsG0280010189.01.T01:three_prime_UTR 30.0%
! GCTGCTAAAGTTCAATTTTA+AGG - Chr2:65906317-65906336 None:intergenic 30.0%
! GGTGTGAAAACATTTTATGT+CGG + Chr2:65911643-65911662 MsG0280010189.01.T01:intron 30.0%
! GTTTTTAAACAATGCCTCAA+GGG + Chr2:65910585-65910604 MsG0280010189.01.T01:intron 30.0%
! TCAATTTAAAGTGAGCAATG+GGG + Chr2:65907891-65907910 MsG0280010189.01.T01:three_prime_UTR 30.0%
! TCTTTGAAGAGAGATAATGT+TGG - Chr2:65907372-65907391 None:intergenic 30.0%
! TTGATGTGTTCTTTTGGATT+GGG - Chr2:65910775-65910794 None:intergenic 30.0%
!! AAATTGAGGTTTTAGCAAGT+TGG - Chr2:65911107-65911126 None:intergenic 30.0%
!! AACTTGCTAAAACCTCAATT+TGG + Chr2:65911106-65911125 MsG0280010189.01.T01:intron 30.0%
!! ATTGGCTTGCGATTAAATTA+AGG - Chr2:65910627-65910646 None:intergenic 30.0%
!! CTGTATGATGTTTTTGTTTC+TGG + Chr2:65906101-65906120 MsG0280010189.01.T01:intron 30.0%
!! GTTCTAAATTGCTTTGAAAC+TGG + Chr2:65907204-65907223 MsG0280010189.01.T01:intron 30.0%
!!! CATTGTTTTTTCTTCTGTCT+AGG - Chr2:65910223-65910242 None:intergenic 30.0%
!!! GATGGTAGAATCTTGTTTTA+AGG + Chr2:65908098-65908117 MsG0280010189.01.T01:intron 30.0%
!!! TCAAAATTTTGGTTTCGGTT+CGG + Chr2:65906697-65906716 MsG0280010189.01.T01:intron 30.0%
AAAAAACGACAAGGTAGAGT+TGG - Chr2:65908292-65908311 None:intergenic 35.0%
AAACAAAAACATCACGACCA+AGG - Chr2:65911713-65911732 None:intergenic 35.0%
AAACCGATAACTGTATAACC+TGG + Chr2:65910118-65910137 MsG0280010189.01.T01:intron 35.0%
AAATCAATGAGGTCGCATTT+CGG - Chr2:65905874-65905893 None:intergenic 35.0%
AAGAATTACCGAAGAACCAA+AGG + Chr2:65911988-65912007 MsG0280010189.01.T01:three_prime_UTR 35.0%
AAGGAAAAACACTGGAAACA+GGG - Chr2:65910326-65910345 None:intergenic 35.0%
AATCATGATTACTTCGTTGG+AGG + Chr2:65907097-65907116 MsG0280010189.01.T01:intron 35.0%
AATCCAGCATTACCAAAGAA+AGG - Chr2:65912353-65912372 None:intergenic 35.0%
ACCATTTCAACACTTTGGTT+CGG + Chr2:65906820-65906839 MsG0280010189.01.T01:intron 35.0%
ACTGAACCAAAGTTATGGTT+CGG - Chr2:65906756-65906775 None:intergenic 35.0%
AGAATTACCGAAGAACCAAA+GGG + Chr2:65911989-65912008 MsG0280010189.01.T01:three_prime_UTR 35.0%
AGGAGTAAGTCAGTTATTGT+AGG - Chr2:65910798-65910817 None:intergenic 35.0%
AGTGAGAATAAGAGAAGAAG+AGG - Chr2:65905823-65905842 None:intergenic 35.0%
AGTGCTTAAAAAGGATGTAC+TGG + Chr2:65912216-65912235 MsG0280010189.01.T01:three_prime_UTR 35.0%
ATCCAATCTAAACCAAGAAG+GGG - Chr2:65907867-65907886 None:intergenic 35.0%
ATCTATTGGATACAAAGTGG+TGG + Chr2:65907708-65907727 MsG0280010189.01.T01:three_prime_UTR 35.0%
ATGGAAGATGTGTTGCAATT+TGG - Chr2:65909229-65909248 None:intergenic 35.0%
ATTAGGGTTTAGAAAAGGGT+TGG - Chr2:65905775-65905794 None:intergenic 35.0%
ATTCCTCAAACAATGCACTT+AGG - Chr2:65910473-65910492 None:intergenic 35.0%
CGATGATGATTATGATGAAG+AGG + Chr2:65907594-65907613 MsG0280010189.01.T01:three_prime_UTR 35.0%
CTAGCGCTTAAACAATTCTA+CGG - Chr2:65906978-65906997 None:intergenic 35.0%
GAACCATAACAGTAACCTTA+TGG + Chr2:65906445-65906464 MsG0280010189.01.T01:intron 35.0%
GATAACTGTATAACCTGGAA+TGG + Chr2:65910123-65910142 MsG0280010189.01.T01:intron 35.0%
GATCCAATCTAAACCAAGAA+GGG - Chr2:65907868-65907887 None:intergenic 35.0%
GATGATTATGATGAAGAGGA+GGG + Chr2:65907598-65907617 MsG0280010189.01.T01:three_prime_UTR 35.0%
GCAATGGAATGTTTAATTGC+TGG - Chr2:65908518-65908537 None:intergenic 35.0%
GCATGACCCTTAAATTCAAT+AGG - Chr2:65910440-65910459 None:intergenic 35.0%
GGGTGATGAAATGTTATGAT+TGG - Chr2:65907433-65907452 None:intergenic 35.0%
GGGTTTGAATTGGTGAAAAT+GGG - Chr2:65907459-65907478 None:intergenic 35.0%
GGTACATACCAATTACCAAT+AGG + Chr2:65906939-65906958 MsG0280010189.01.T01:intron 35.0%
GTTGCAGTTAGTGCTTAAAA+AGG + Chr2:65912207-65912226 MsG0280010189.01.T01:three_prime_UTR 35.0%
TAAAGCCGGTCTTAATAGTT+TGG - Chr2:65908204-65908223 None:intergenic 35.0%
TAAGGAAAAACACTGGAAAC+AGG - Chr2:65910327-65910346 None:intergenic 35.0%
TACAAGAGAGGAGCTAAAAA+AGG + Chr2:65910078-65910097 MsG0280010189.01.T01:intron 35.0%
TACCTTAGGAATCGTAGAAT+AGG - Chr2:65905947-65905966 None:intergenic 35.0%
TCGGTTAATAGGTATGCAAA+TGG + Chr2:65906726-65906745 MsG0280010189.01.T01:intron 35.0%
TCTATTGGATACAAAGTGGT+GGG + Chr2:65907709-65907728 MsG0280010189.01.T01:three_prime_UTR 35.0%
TCTTAAATTCCCTAGCTACA+CGG - Chr2:65909949-65909968 None:intergenic 35.0%
TGAATATGTAGGTACAAGAG+AGG + Chr2:65910066-65910085 MsG0280010189.01.T01:intron 35.0%
TGAATTGGTGAAAATGGGAA+GGG - Chr2:65907454-65907473 None:intergenic 35.0%
TGAGAATCGCAAAATCAATG+AGG - Chr2:65905885-65905904 None:intergenic 35.0%
TGATCCAATCTAAACCAAGA+AGG - Chr2:65907869-65907888 None:intergenic 35.0%
TGATGATTATGATGAAGAGG+AGG + Chr2:65907597-65907616 MsG0280010189.01.T01:three_prime_UTR 35.0%
TGCAGTGTAGGATTTGAATT+AGG - Chr2:65912532-65912551 None:intergenic 35.0%
TGGAAGATGTGTTGCAATTT+GGG - Chr2:65909228-65909247 None:intergenic 35.0%
TGGGTTTGAATTGGTGAAAA+TGG - Chr2:65907460-65907479 None:intergenic 35.0%
TGTAGCTAGGGAATTTAAGA+AGG + Chr2:65909949-65909968 MsG0280010189.01.T01:intron 35.0%
TTCCTCAAACAATGCACTTA+GGG - Chr2:65910472-65910491 None:intergenic 35.0%
TTGAATTGGTGAAAATGGGA+AGG - Chr2:65907455-65907474 None:intergenic 35.0%
TTGTCAGTATTACTTACAGC+TGG - Chr2:65910394-65910413 None:intergenic 35.0%
TTTCAGGAGTTGACAAGTTA+AGG + Chr2:65912102-65912121 MsG0280010189.01.T01:intron 35.0%
! AAATGTTTTCACACCACTCA+TGG - Chr2:65911638-65911657 None:intergenic 35.0%
! AAGGCTTTTCAACCATTCAT+AGG - Chr2:65912158-65912177 None:intergenic 35.0%
! AAGTAGGAAAAAGGTGTACA+CGG + Chr2:65907660-65907679 MsG0280010189.01.T01:three_prime_UTR 35.0%
! ACCATAACTTTGGTTCAGTT+CGG + Chr2:65906757-65906776 MsG0280010189.01.T01:intron 35.0%
! ACGTTGTCATTCTTTTGTAG+GGG - Chr2:65907736-65907755 None:intergenic 35.0%
! ATAATGTTGGTTGTGATTGC+CGG - Chr2:65907359-65907378 None:intergenic 35.0%
! ATGTCATTTAGTAGCACTTC+TGG - Chr2:65908844-65908863 None:intergenic 35.0%
! ATTTAGGATACGATACGGTT+AGG + Chr2:65909329-65909348 MsG0280010189.01.T01:intron 35.0%
! GATGGATGGTTATCATTTTC+AGG + Chr2:65912086-65912105 MsG0280010189.01.T01:intron 35.0%
! GGTTAGTTCCAAACCTTATA+CGG + Chr2:65906778-65906797 MsG0280010189.01.T01:intron 35.0%
! GTTGATGTGTTCTTTTGGAT+TGG - Chr2:65910776-65910795 None:intergenic 35.0%
! GTTTTCTTCTACCCAAATTG+AGG - Chr2:65911121-65911140 None:intergenic 35.0%
! GTTTTCTTTACCTAGTTCGA+AGG - Chr2:65908970-65908989 None:intergenic 35.0%
! TCAATGAGTTTTCGACAGTT+GGG + Chr2:65912268-65912287 MsG0280010189.01.T01:three_prime_UTR 35.0%
! TTCAATGTTTGGGATTCTGT+AGG + Chr2:65906918-65906937 MsG0280010189.01.T01:intron 35.0%
! TTGTTTTCTGCCCAGTTTTT+TGG + Chr2:65906641-65906660 MsG0280010189.01.T01:intron 35.0%
! TTTGATGTGATCGTCTTGTT+TGG - Chr2:65907527-65907546 None:intergenic 35.0%
!! AATCCTTTCTTTGGTAATGC+TGG + Chr2:65912347-65912366 MsG0280010189.01.T01:three_prime_UTR 35.0%
!! ACACTTTGGTTCGGTTAATA+TGG + Chr2:65906829-65906848 MsG0280010189.01.T01:intron 35.0%
!! AGACCGGCTTTAGATTTAAA+TGG + Chr2:65908212-65908231 MsG0280010189.01.T01:intron 35.0%
!! GCGTTGTTTTATGTTAACTG+AGG - Chr2:65911160-65911179 None:intergenic 35.0%
!! GGGATTACTTTAGAATAGAG+TGG + Chr2:65908729-65908748 MsG0280010189.01.T01:intron 35.0%
!! GTGTAAGGATTGATTTGAAG+TGG + Chr2:65911866-65911885 MsG0280010189.01.T01:intron 35.0%
!! TGGTATGATTTTGGCCTTTT+GGG + Chr2:65906121-65906140 MsG0280010189.01.T01:intron 35.0%
!! TTTAGAAAAGGGTTGGTTCA+TGG - Chr2:65905768-65905787 None:intergenic 35.0%
!! TTTTGGTTGTTCTTCCATCT+TGG - Chr2:65909183-65909202 None:intergenic 35.0%
!!! CTGAACAAAGTTTTGTTGCT+TGG + Chr2:65908563-65908582 MsG0280010189.01.T01:three_prime_UTR 35.0%
!!! TGTAGGTTGATGTGTTCTTT+TGG - Chr2:65910781-65910800 None:intergenic 35.0%
!!! TGTTTGGGAACTGCTTTTTT+GGG - Chr2:65910705-65910724 None:intergenic 35.0%
AAAATCTGCCAAGAAGGAAC+AGG + Chr2:65912179-65912198 MsG0280010189.01.T01:three_prime_UTR 40.0%
AACCTTTACCTGTTCCTTCT+TGG - Chr2:65912190-65912209 None:intergenic 40.0%
AAGCAAGTAGGTGAAATGGA+GGG + Chr2:65908139-65908158 MsG0280010189.01.T01:intron 40.0%
AAGCAGATGTGGGTTTGAAT+TGG - Chr2:65907469-65907488 None:intergenic 40.0%
AATATTGCGACCTTCGAACT+AGG + Chr2:65908957-65908976 MsG0280010189.01.T01:intron 40.0%
AATTACTAGCAACTAGGGGT+GGG - Chr2:65906869-65906888 None:intergenic 40.0%
ACCGAACTGAACCAAAGTTA+TGG - Chr2:65906761-65906780 None:intergenic 40.0%
AGACAATGGAGTTCCTGTTT+GGG - Chr2:65910720-65910739 None:intergenic 40.0%
ATCCACTTAGTCAGGTTTGT+AGG + Chr2:65912308-65912327 MsG0280010189.01.T01:three_prime_UTR 40.0%
ATTCAAACCCACATCTGCTT+TGG + Chr2:65907469-65907488 MsG0280010189.01.T01:CDS 40.0%
ATTTCACCTACTTGCTTAGC+GGG - Chr2:65908136-65908155 None:intergenic 40.0%
CAAAAAAGCAGTTCCCAAAC+AGG + Chr2:65910704-65910723 MsG0280010189.01.T01:intron 40.0%
CAAGACGATCACATCAAAGA+AGG + Chr2:65907529-65907548 MsG0280010189.01.T01:CDS 40.0%
CACCTATTCTACGATTCCTA+AGG + Chr2:65905942-65905961 MsG0280010189.01.T01:five_prime_UTR 40.0%
CAGCTGTACAAAAAACGACA+AGG - Chr2:65908301-65908320 None:intergenic 40.0%
CAGTGAGCCAAAAAATGCAA+TGG - Chr2:65908534-65908553 None:intergenic 40.0%
CATGGTAGAACAGTACAAGA+AGG + Chr2:65910014-65910033 MsG0280010189.01.T01:intron 40.0%
CATTTCACCTACTTGCTTAG+CGG - Chr2:65908137-65908156 None:intergenic 40.0%
CTACCTTGTGTTAGATCACA+TGG + Chr2:65910150-65910169 MsG0280010189.01.T01:intron 40.0%
CTATTGGATACAAAGTGGTG+GGG + Chr2:65907710-65907729 MsG0280010189.01.T01:three_prime_UTR 40.0%
GAAACAACCAAGATAGAACC+AGG + Chr2:65910965-65910984 MsG0280010189.01.T01:intron 40.0%
GAAACTCGTTAGAAGTAAGC+AGG + Chr2:65910908-65910927 MsG0280010189.01.T01:intron 40.0%
GAAGCAGAAGCAGAATCTAT+TGG + Chr2:65907694-65907713 MsG0280010189.01.T01:three_prime_UTR 40.0%
GAATTGGTGAAAATGGGAAG+GGG - Chr2:65907453-65907472 None:intergenic 40.0%
GAGGATAATAGATCACCCTT+AGG - Chr2:65911767-65911786 None:intergenic 40.0%
GAGGCGAATTGGATTGAAAT+TGG - Chr2:65905804-65905823 None:intergenic 40.0%
GATACGTATCCACGAAGTAT+CGG - Chr2:65909848-65909867 None:intergenic 40.0%
GATTCTCACTCTTCTTCTTC+TGG + Chr2:65905897-65905916 MsG0280010189.01.T01:five_prime_UTR 40.0%
GCATCTAGTGCCTGATATAA+GGG - Chr2:65911938-65911957 None:intergenic 40.0%
GGAAGATGTGTTGCAATTTG+GGG - Chr2:65909227-65909246 None:intergenic 40.0%
GGACAATTACTAGCAACTAG+GGG - Chr2:65906873-65906892 None:intergenic 40.0%
GGATACGTCAAAGAGAAATC+AGG + Chr2:65908056-65908075 MsG0280010189.01.T01:intron 40.0%
GGGACAATTACTAGCAACTA+GGG - Chr2:65906874-65906893 None:intergenic 40.0%
GGTTAACCGAACCATAACTT+TGG + Chr2:65906747-65906766 MsG0280010189.01.T01:intron 40.0%
GTTCAGAATTCCAAATGGAC+TGG + Chr2:65911024-65911043 MsG0280010189.01.T01:intron 40.0%
GTTCCAAACCTTATACGGTT+CGG + Chr2:65906783-65906802 MsG0280010189.01.T01:intron 40.0%
GTTGAGAAACCTCCTATGAA+TGG + Chr2:65912143-65912162 MsG0280010189.01.T01:three_prime_UTR 40.0%
TAAGAGAAGAAGAGGCGAAT+TGG - Chr2:65905815-65905834 None:intergenic 40.0%
TAAGCAAGTAGGTGAAATGG+AGG + Chr2:65908138-65908157 MsG0280010189.01.T01:intron 40.0%
TACAAACCTGACTAAGTGGA+TGG - Chr2:65912309-65912328 None:intergenic 40.0%
TACGTCAAAGAGAAATCAGG+TGG + Chr2:65908059-65908078 MsG0280010189.01.T01:intron 40.0%
TCAGAGGCTAAACTTGCAAT+AGG - Chr2:65910191-65910210 None:intergenic 40.0%
TCCAATCTAAACCAAGAAGG+GGG - Chr2:65907866-65907885 None:intergenic 40.0%
TCGAAGCTAGTTCACATGAA+CGG + Chr2:65905846-65905865 MsG0280010189.01.T01:five_prime_UTR 40.0%
TGACCATGTGATCTAACACA+AGG - Chr2:65910156-65910175 None:intergenic 40.0%
TGATACTCCACAGATACACA+AGG - Chr2:65909782-65909801 None:intergenic 40.0%
TGCCAACAATTGTCTGACTA+GGG - Chr2:65908592-65908611 None:intergenic 40.0%
TGTTAGATCACATGGTCACT+GGG + Chr2:65910158-65910177 MsG0280010189.01.T01:intron 40.0%
TTCCCTAAGTGCATTGTTTG+AGG + Chr2:65910467-65910486 MsG0280010189.01.T01:intron 40.0%
TTCCTACAAACCTGACTAAG+TGG - Chr2:65912313-65912332 None:intergenic 40.0%
TTTGAGAGAACAGAAGCAAG+TGG + Chr2:65906382-65906401 MsG0280010189.01.T01:intron 40.0%
! CATTTTCCCGTTAGTAGATG+TGG - Chr2:65910677-65910696 None:intergenic 40.0%
! CTCAATGAGTTTTCGACAGT+TGG + Chr2:65912267-65912286 MsG0280010189.01.T01:three_prime_UTR 40.0%
! GAAGTATCCTTGTGTATCTG+TGG + Chr2:65909772-65909791 MsG0280010189.01.T01:intron 40.0%
! GCTTTTCAACCATTCATAGG+AGG - Chr2:65912155-65912174 None:intergenic 40.0%
! TAATGTTGGTTGTGATTGCC+GGG - Chr2:65907358-65907377 None:intergenic 40.0%
! TCCTTCTTGGCAGATTTTGA+AGG - Chr2:65912177-65912196 None:intergenic 40.0%
! TGATAACTTTTCCCCCTTCT+TGG + Chr2:65907852-65907871 MsG0280010189.01.T01:intron 40.0%
! TGTTGCAATTTGGGGTTACA+TGG - Chr2:65909219-65909238 None:intergenic 40.0%
! TTCTTCCATCTTGGAAGTGT+TGG - Chr2:65909174-65909193 None:intergenic 40.0%
!! AAACCTTATACGGTTCGGTT+CGG + Chr2:65906788-65906807 MsG0280010189.01.T01:intron 40.0%
!! ACCGAACCAAAGTGTTGAAA+TGG - Chr2:65906824-65906843 None:intergenic 40.0%
!! ATGTGTTCTTTTGGATTGGG+AGG - Chr2:65910772-65910791 None:intergenic 40.0%
!! CTGGTATGATTTTGGCCTTT+TGG + Chr2:65906120-65906139 MsG0280010189.01.T01:intron 40.0%
!! TGACTTTCCTGGTTCTATCT+TGG - Chr2:65910975-65910994 None:intergenic 40.0%
!! TGTGTTCTTTTGGATTGGGA+GGG - Chr2:65910771-65910790 None:intergenic 40.0%
!! TTCGGTTTGGTTCGGTTAAT+AGG + Chr2:65906715-65906734 MsG0280010189.01.T01:intron 40.0%
!!! ATTTTGGTTTCGGTTCGGTT+TGG + Chr2:65906702-65906721 MsG0280010189.01.T01:intron 40.0%
!!! CTGTTTGGGAACTGCTTTTT+TGG - Chr2:65910706-65910725 None:intergenic 40.0%
!!! TTTTAACTTGGAGGGGTGTA+AGG + Chr2:65911851-65911870 MsG0280010189.01.T01:intron 40.0%
AAATTCTCACGGACACTCCT+CGG + Chr2:65911299-65911318 MsG0280010189.01.T01:intron 45.0%
AAGAACCAGCATGACTTTCC+TGG - Chr2:65910986-65911005 None:intergenic 45.0%
AAGAAGAGAAATAGCGTCCG+TGG - Chr2:65907504-65907523 None:intergenic 45.0%
AATCAGCCATCCACTTAGTC+AGG + Chr2:65912300-65912319 MsG0280010189.01.T01:three_prime_UTR 45.0%
AATGCTAACAAGTGCCCTTG+AGG - Chr2:65910602-65910621 None:intergenic 45.0%
ACCTGAACAACTGCAAAAGC+AGG - Chr2:65907775-65907794 None:intergenic 45.0%
AGCCTCTCACATATCTGCAA+GGG - Chr2:65911247-65911266 None:intergenic 45.0%
AGCTGTTCATGCTGTTGTTG+AGG + Chr2:65908630-65908649 MsG0280010189.01.T01:three_prime_UTR 45.0%
AGGAACTATGCGTCCATCAT+GGG + Chr2:65910928-65910947 MsG0280010189.01.T01:intron 45.0%
ATATCAGGCACTAGATGCGA+AGG + Chr2:65911940-65911959 MsG0280010189.01.T01:intron 45.0%
ATCGGTATCCGATACGTATC+CGG + Chr2:65909884-65909903 MsG0280010189.01.T01:intron 45.0%
ATGATTGGGAAAAGCAGCCA+CGG - Chr2:65907418-65907437 None:intergenic 45.0%
CAAGACATTGTCTGCAGTGT+AGG - Chr2:65912544-65912563 None:intergenic 45.0%
CAATTACTAGCAACTAGGGG+TGG - Chr2:65906870-65906889 None:intergenic 45.0%
CCATTGTCCAAAGCAGATGT+GGG - Chr2:65907479-65907498 None:intergenic 45.0%
CGCATCTAGTGCCTGATATA+AGG - Chr2:65911939-65911958 None:intergenic 45.0%
CGCTAAGCAAGTAGGTGAAA+TGG + Chr2:65908135-65908154 MsG0280010189.01.T01:intron 45.0%
CTGCCAACAATTGTCTGACT+AGG - Chr2:65908593-65908612 None:intergenic 45.0%
GAAATTGAAGCTGCCCATGA+TGG - Chr2:65910944-65910963 None:intergenic 45.0%
GAACCGAACCGTATAAGGTT+TGG - Chr2:65906789-65906808 None:intergenic 45.0%
GAGACAATGGAGTTCCTGTT+TGG - Chr2:65910721-65910740 None:intergenic 45.0%
GAGTCTATGAAGCACGGATA+CGG - Chr2:65911454-65911473 None:intergenic 45.0%
GCCAACAATTGTCTGACTAG+GGG - Chr2:65908591-65908610 None:intergenic 45.0%
GCCTTCAAAATCTGCCAAGA+AGG + Chr2:65912173-65912192 MsG0280010189.01.T01:three_prime_UTR 45.0%
GGCAAAGAGTCTATGAAGCA+CGG - Chr2:65911460-65911479 None:intergenic 45.0%
GGCACGTATGGTACAAAAGA+TGG + Chr2:65908080-65908099 MsG0280010189.01.T01:intron 45.0%
GGGGACAATTACTAGCAACT+AGG - Chr2:65906875-65906894 None:intergenic 45.0%
GGTCTGTCCACATCTACTAA+CGG + Chr2:65910667-65910686 MsG0280010189.01.T01:intron 45.0%
GTCTGTCCACATCTACTAAC+GGG + Chr2:65910668-65910687 MsG0280010189.01.T01:intron 45.0%
GTGTTAGATCACATGGTCAC+TGG + Chr2:65910157-65910176 MsG0280010189.01.T01:intron 45.0%
TAACCGAACCGAACCGTATA+AGG - Chr2:65906794-65906813 None:intergenic 45.0%
TAAGAGAGAACAGAGGCAGA+TGG + Chr2:65910886-65910905 MsG0280010189.01.T01:intron 45.0%
TAGAACCAGGAAAGTCATGC+TGG + Chr2:65910978-65910997 MsG0280010189.01.T01:intron 45.0%
TAGCCTCTCACATATCTGCA+AGG - Chr2:65911248-65911267 None:intergenic 45.0%
TATCCGATACGTATCCGGTA+CGG + Chr2:65909889-65909908 MsG0280010189.01.T01:intron 45.0%
TCCCCCTTCTTGGTTTAGAT+TGG + Chr2:65907862-65907881 MsG0280010189.01.T01:intron 45.0%
TCCCCTAGTCAGACAATTGT+TGG + Chr2:65908587-65908606 MsG0280010189.01.T01:three_prime_UTR 45.0%
TCTCAGTGCCAGAATCATGT+AGG + Chr2:65910737-65910756 MsG0280010189.01.T01:intron 45.0%
TGCATCCAACACTTCCAAGA+TGG + Chr2:65909166-65909185 MsG0280010189.01.T01:intron 45.0%
TGCCAAGAAGGAACAGGTAA+AGG + Chr2:65912185-65912204 MsG0280010189.01.T01:three_prime_UTR 45.0%
TGGTATAGATCAGTCCAGTC+TGG - Chr2:65911087-65911106 None:intergenic 45.0%
TTCCCTTGCAGATATGTGAG+AGG + Chr2:65911242-65911261 MsG0280010189.01.T01:intron 45.0%
! ATGAGTTTTCGACAGTTGGG+TGG + Chr2:65912271-65912290 MsG0280010189.01.T01:three_prime_UTR 45.0%
! TGATTCTGGCACTGAGACAA+TGG - Chr2:65910734-65910753 None:intergenic 45.0%
! TGGTTGGTCCTACATGATTC+TGG - Chr2:65910748-65910767 None:intergenic 45.0%
!! AGGAAAGTCATGCTGGTTCT+TGG + Chr2:65910985-65911004 MsG0280010189.01.T01:intron 45.0%
!! GACAAGGTAGAGTTGGTACA+CGG - Chr2:65908285-65908304 None:intergenic 45.0%
!! GTCTAGGTTTTTCAGCTCAG+AGG - Chr2:65910207-65910226 None:intergenic 45.0%
!! TATATGTGTCGGTGTCGTGT+CGG - Chr2:65911365-65911384 None:intergenic 45.0%
ACAAGGTAGAGTCCCATTCC+AGG - Chr2:65910139-65910158 None:intergenic 50.0%
ACAGCATGAACAGCTCCATC+CGG - Chr2:65908625-65908644 None:intergenic 50.0%
ACTGCAAAAGCAGGCTCGTA+TGG - Chr2:65907766-65907785 None:intergenic 50.0%
AGAGTGAGCGGAGAGATGAT+GGG - Chr2:65907395-65907414 None:intergenic 50.0%
ATCCGATACGTATCCGGTAC+GGG + Chr2:65909890-65909909 MsG0280010189.01.T01:intron 50.0%
ATGAAGCACGGATACGGACA+CGG - Chr2:65911448-65911467 None:intergenic 50.0%
CAGGAACTATGCGTCCATCA+TGG + Chr2:65910927-65910946 MsG0280010189.01.T01:intron 50.0%
CCATGACATGTGTCAGACAC+GGG - Chr2:65911336-65911355 None:intergenic 50.0%
CTTGCAGGCATCTCCGAATA+GGG - Chr2:65907329-65907348 None:intergenic 50.0%
GAAGCCCGGATACTCCAAAA+CGG - Chr2:65909923-65909942 None:intergenic 50.0%
GAGAAATCAGGTGGCACGTA+TGG + Chr2:65908068-65908087 MsG0280010189.01.T01:intron 50.0%
GCCATGACATGTGTCAGACA+CGG - Chr2:65911337-65911356 None:intergenic 50.0%
GCCATTGTCCAAAGCAGATG+TGG - Chr2:65907480-65907499 None:intergenic 50.0%
GGCTTCATACCGTGTAGCTA+GGG + Chr2:65909937-65909956 MsG0280010189.01.T01:intron 50.0%
GTGAAGCCCCAATACGGATA+CGG + Chr2:65909269-65909288 MsG0280010189.01.T01:intron 50.0%
TACCCGTACCGGATACGTAT+CGG - Chr2:65909895-65909914 None:intergenic 50.0%
TAGCTACACGGTATGAAGCC+CGG - Chr2:65909937-65909956 None:intergenic 50.0%
TCACCATGCACACCCCTATT+CGG + Chr2:65907313-65907332 MsG0280010189.01.T01:exon 50.0%
TGAAGCCCCAATACGGATAC+GGG + Chr2:65909270-65909289 MsG0280010189.01.T01:intron 50.0%
TGTGGTGTGAAGCCCCAATA+CGG + Chr2:65909263-65909282 MsG0280010189.01.T01:intron 50.0%
TTGCAGGCATCTCCGAATAG+GGG - Chr2:65907328-65907347 None:intergenic 50.0%
TTGTTGGCAGACCATTGTGC+CGG + Chr2:65908603-65908622 MsG0280010189.01.T01:three_prime_UTR 50.0%
! CCCACATCTGCTTTGGACAA+TGG + Chr2:65907476-65907495 MsG0280010189.01.T01:CDS 50.0%
! GAAAAAGGTGTACACGGCAG+AGG + Chr2:65907666-65907685 MsG0280010189.01.T01:three_prime_UTR 50.0%
! GATACGTATCGCGAGTATCG+TGG + Chr2:65909858-65909877 MsG0280010189.01.T01:intron 50.0%
! TCGCGAGTATCGTGGAGTAT+CGG + Chr2:65909866-65909885 MsG0280010189.01.T01:intron 50.0%
! TGCTTTGGACAATGGCACCA+CGG + Chr2:65907484-65907503 MsG0280010189.01.T01:CDS 50.0%
!! AAGAACCAAAGGGCATCGTC+AGG + Chr2:65911999-65912018 MsG0280010189.01.T01:intron 50.0%
!! AAGGATGTACTGGCTGTTGC+CGG + Chr2:65912226-65912245 MsG0280010189.01.T01:three_prime_UTR 50.0%
!! GACGATGCCCTTTGGTTCTT+CGG - Chr2:65911999-65912018 None:intergenic 50.0%
!! GCCTGCTTTTGCAGTTGTTC+AGG + Chr2:65907771-65907790 MsG0280010189.01.T01:three_prime_UTR 50.0%
!! GGTTTCGGTTCGGTTTGGTT+CGG + Chr2:65906707-65906726 MsG0280010189.01.T01:intron 50.0%
!! GTTCTTTTGGATTGGGAGGG+TGG - Chr2:65910768-65910787 None:intergenic 50.0%
!! TTCCAAATGGACTGGCTGAG+AGG + Chr2:65911032-65911051 MsG0280010189.01.T01:intron 50.0%
!! TTTTGGATTGGGAGGGTGGT+TGG - Chr2:65910764-65910783 None:intergenic 50.0%
!!! CGTCTCCGTTTTGGAGTATC+CGG + Chr2:65909915-65909934 MsG0280010189.01.T01:intron 50.0%
!!! GTCTCCGTTTTGGAGTATCC+GGG + Chr2:65909916-65909935 MsG0280010189.01.T01:intron 50.0%
AAACGGAGACGTACCCGTAC+CGG - Chr2:65909906-65909925 None:intergenic 55.0%
AACAGCTCCATCCGGCACAA+TGG - Chr2:65908617-65908636 None:intergenic 55.0%
AACTAGGGGTGGGCATGGTT+CGG - Chr2:65906859-65906878 None:intergenic 55.0%
ACACACCTGACGATGCCCTT+TGG - Chr2:65912007-65912026 None:intergenic 55.0%
ATTGCCGGGTTAACGCTTGC+AGG - Chr2:65907344-65907363 None:intergenic 55.0%
CCCGTGTCTGACACATGTCA+TGG + Chr2:65911333-65911352 MsG0280010189.01.T01:intron 55.0%
CTATAGTGCCTGTGTGCTGC+AGG - Chr2:65910818-65910837 None:intergenic 55.0%
GACCTCTCAGCCAGTCCATT+TGG - Chr2:65911037-65911056 None:intergenic 55.0%
GACTTACTCCTGCAGCACAC+AGG + Chr2:65910807-65910826 MsG0280010189.01.T01:intron 55.0%
GAGAGTGAGCGGAGAGATGA+TGG - Chr2:65907396-65907415 None:intergenic 55.0%
GATGCCTGCAAGCGTTAACC+CGG + Chr2:65907337-65907356 MsG0280010189.01.T01:CDS 55.0%
GCTTGCAGGCATCTCCGAAT+AGG - Chr2:65907330-65907349 None:intergenic 55.0%
GGGCTTCATACCGTGTAGCT+AGG + Chr2:65909936-65909955 MsG0280010189.01.T01:intron 55.0%
TCACGGACACTCCTCGGATA+AGG + Chr2:65911305-65911324 MsG0280010189.01.T01:intron 55.0%
TCTACGTTGAGTGGCCAGAC+TGG + Chr2:65911070-65911089 MsG0280010189.01.T01:intron 55.0%
! GTACGGGTACGTCTCCGTTT+TGG + Chr2:65909906-65909925 MsG0280010189.01.T01:intron 55.0%
! TCTCCGAATAGGGGTGTGCA+TGG - Chr2:65907319-65907338 None:intergenic 55.0%
!! AGGGCATCGTCAGGTGTGTT+TGG + Chr2:65912008-65912027 MsG0280010189.01.T01:intron 55.0%
AAGCAGCCACGGAGAGTGAG+CGG - Chr2:65907407-65907426 None:intergenic 60.0%
ACCCGCACCCGTATCCGTAT+TGG - Chr2:65909280-65909299 None:intergenic 60.0%
ATCTCTCCGCTCACTCTCCG+TGG + Chr2:65907398-65907417 MsG0280010189.01.T01:CDS 60.0%
CCCAATACGGATACGGGTGC+GGG + Chr2:65909276-65909295 MsG0280010189.01.T01:three_prime_UTR 60.0%
CCCCAATACGGATACGGGTG+CGG + Chr2:65909275-65909294 MsG0280010189.01.T01:three_prime_UTR 60.0%
CCCGCACCCGTATCCGTATT+GGG - Chr2:65909279-65909298 None:intergenic 60.0%
CCGCACCCGTATCCGTATTG+GGG - Chr2:65909278-65909297 None:intergenic 60.0%
CTAGCAACTAGGGGTGGGCA+TGG - Chr2:65906864-65906883 None:intergenic 60.0%
GAGACGCCCGCTAAGCAAGT+AGG + Chr2:65908127-65908146 MsG0280010189.01.T01:intron 60.0%
GGTGTACACGGCAGAGGAGA+AGG + Chr2:65907672-65907691 MsG0280010189.01.T01:three_prime_UTR 60.0%
TGGCAGACCATTGTGCCGGA+TGG + Chr2:65908607-65908626 MsG0280010189.01.T01:three_prime_UTR 60.0%
!! TGTCGGTGTCGTGTCGGTGT+CGG - Chr2:65911359-65911378 None:intergenic 60.0%
CACGGGACACGCCTTATCCG+AGG - Chr2:65911319-65911338 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 65905711 65912567 65905711 ID=MsG0280010189.01;Name=MsG0280010189.01
Chr2 mRNA 65905711 65912567 65905711 ID=MsG0280010189.01.T01;Parent=MsG0280010189.01;Name=MsG0280010189.01.T01;_AED=0.38;_eAED=0.43;_QI=269|0.33|0.42|1|0.16|0|7|1053|81
Chr2 exon 65905711 65905963 65905711 ID=MsG0280010189.01.T01:exon:18149;Parent=MsG0280010189.01.T01
Chr2 exon 65907302 65907792 65907302 ID=MsG0280010189.01.T01:exon:18150;Parent=MsG0280010189.01.T01
Chr2 five_prime_UTR 65905711 65905963 65905711 ID=MsG0280010189.01.T01:five_prime_utr;Parent=MsG0280010189.01.T01
Chr2 five_prime_UTR 65907302 65907317 65907302 ID=MsG0280010189.01.T01:five_prime_utr;Parent=MsG0280010189.01.T01
Chr2 CDS 65907318 65907563 65907318 ID=MsG0280010189.01.T01:cds;Parent=MsG0280010189.01.T01
Chr2 three_prime_UTR 65907564 65907792 65907564 ID=MsG0280010189.01.T01:three_prime_utr;Parent=MsG0280010189.01.T01
Chr2 three_prime_UTR 65907880 65907964 65907880 ID=MsG0280010189.01.T01:three_prime_utr;Parent=MsG0280010189.01.T01
Chr2 three_prime_UTR 65908519 65908657 65908519 ID=MsG0280010189.01.T01:three_prime_utr;Parent=MsG0280010189.01.T01
Chr2 three_prime_UTR 65909275 65909345 65909275 ID=MsG0280010189.01.T01:three_prime_utr;Parent=MsG0280010189.01.T01
Chr2 three_prime_UTR 65911947 65912015 65911947 ID=MsG0280010189.01.T01:three_prime_utr;Parent=MsG0280010189.01.T01
Chr2 three_prime_UTR 65912108 65912567 65912108 ID=MsG0280010189.01.T01:three_prime_utr;Parent=MsG0280010189.01.T01
Chr2 mRNA 65907284 65912567 65907284 ID=MsG0280010189.01.T02;Parent=MsG0280010189.01;Name=MsG0280010189.01.T02;_AED=0.40;_eAED=0.45;_QI=34|0.2|0.33|1|0.2|0.16|6|1053|81
Chr2 exon 65907284 65907792 65907284 ID=MsG0280010189.01.T02:exon:18156;Parent=MsG0280010189.01.T02
Chr2 five_prime_UTR 65907284 65907317 65907284 ID=MsG0280010189.01.T02:five_prime_utr;Parent=MsG0280010189.01.T02
Chr2 CDS 65907318 65907563 65907318 ID=MsG0280010189.01.T02:cds;Parent=MsG0280010189.01.T02
Chr2 three_prime_UTR 65907564 65907792 65907564 ID=MsG0280010189.01.T02:three_prime_utr;Parent=MsG0280010189.01.T02
Chr2 three_prime_UTR 65907880 65907964 65907880 ID=MsG0280010189.01.T02:three_prime_utr;Parent=MsG0280010189.01.T02
Chr2 three_prime_UTR 65908519 65908657 65908519 ID=MsG0280010189.01.T02:three_prime_utr;Parent=MsG0280010189.01.T02
Chr2 three_prime_UTR 65909275 65909345 65909275 ID=MsG0280010189.01.T02:three_prime_utr;Parent=MsG0280010189.01.T02
Chr2 three_prime_UTR 65911947 65912015 65911947 ID=MsG0280010189.01.T02:three_prime_utr;Parent=MsG0280010189.01.T02
Chr2 three_prime_UTR 65912108 65912567 65912108 ID=MsG0280010189.01.T02:three_prime_utr;Parent=MsG0280010189.01.T02
Gene Sequence

>MsG0280010189.01.T01

ATGCACACCCCTATTCGGAGATGCCTGCAAGCGTTAACCCGGCAATCACAACCAACATTATCTCTCTTCAAAGACCCATCATCTCTCCGCTCACTCTCCGTGGCTGCTTTTCCCAATCATAACATTTCATCACCCCTTCCCATTTTCACCAATTCAAACCCACATCTGCTTTGGACAATGGCACCACGGACGCTATTTCTCTTCTTCCAAACAAGACGATCACATCAAAGAAGGCTGTACACATGA

>MsG0280010189.01.T02

ATGCACACCCCTATTCGGAGATGCCTGCAAGCGTTAACCCGGCAATCACAACCAACATTATCTCTCTTCAAAGACCCATCATCTCTCCGCTCACTCTCCGTGGCTGCTTTTCCCAATCATAACATTTCATCACCCCTTCCCATTTTCACCAATTCAAACCCACATCTGCTTTGGACAATGGCACCACGGACGCTATTTCTCTTCTTCCAAACAAGACGATCACATCAAAGAAGGCTGTACACATGA
Protein sequence

>MsG0280010189.01.T01

MHTPIRRCLQALTRQSQPTLSLFKDPSSLRSLSVAAFPNHNISSPLPIFTNSNPHLLWTMAPRTLFLFFQTRRSHQRRLYT*

>MsG0280010189.01.T02

MHTPIRRCLQALTRQSQPTLSLFKDPSSLRSLSVAAFPNHNISSPLPIFTNSNPHLLWTMAPRTLFLFFQTRRSHQRRLYT*