AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006570.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006570.01.T01 MTR_2g010980 72.886 343 28 7 1 309 1 312 1.74e-148 426
MsG0280006570.01.T01 MTR_2g010970 98.540 137 2 0 330 466 1 137 1.05e-89 271
MsG0280006570.01.T01 MTR_2g010970 98.291 117 2 0 330 446 1 117 5.08e-78 239
MsG0280006570.01.T01 MTR_4g091930 66.412 131 41 2 340 467 11 141 5.92e-53 176
MsG0280006570.01.T01 MTR_4g081560 66.379 116 39 0 357 472 29 144 5.57e-47 160
MsG0280006570.01.T01 MTR_4g091980 60.630 127 50 0 340 466 14 140 5.65e-47 160
MsG0280006570.01.T01 MTR_4g064460 70.536 112 33 0 355 466 29 140 1.16e-46 159
MsG0280006570.01.T01 MTR_4g091970 66.372 113 37 1 355 466 29 141 2.02e-45 156
MsG0280006570.01.T01 MTR_7g080280 46.667 120 63 1 355 473 39 158 6.78e-31 117
MsG0280006570.01.T01 MTR_7g053107 50.000 108 54 0 359 466 38 145 2.14e-29 114
MsG0280006570.01.T01 MTR_8g085590 34.545 110 70 2 357 465 31 139 1.67e-17 80.1
MsG0280006570.01.T01 MTR_8g085580 32.479 117 79 0 348 464 21 137 1.31e-16 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006570.01.T01 AT1G61667 58.197 122 50 1 346 466 47 168 9.09e-43 150
MsG0280006570.01.T01 AT1G61667 58.197 122 50 1 346 466 11 132 1.53e-42 148
MsG0280006570.01.T01 AT5G54530 62.832 113 42 0 354 466 26 138 9.70e-42 146
MsG0280006570.01.T01 AT3G07460 45.833 120 64 1 349 467 22 141 3.99e-28 110
MsG0280006570.01.T01 AT3G07460 45.833 120 64 1 349 467 22 141 3.22e-27 110
MsG0280006570.01.T01 AT1G11440 32.119 302 146 10 34 280 40 337 5.34e-27 112
MsG0280006570.01.T01 AT3G07470 40.141 142 81 2 330 467 1 142 1.03e-26 105
MsG0280006570.01.T01 AT3G07470 40.141 142 81 2 330 467 1 142 1.87e-26 105
MsG0280006570.01.T01 AT3G07470 40.141 142 81 2 330 467 1 142 2.11e-26 105
MsG0280006570.01.T01 AT5G16380 42.963 135 74 2 336 467 8 142 1.75e-23 98.2
MsG0280006570.01.T01 AT1G55265 35.965 114 71 2 353 465 50 162 1.90e-16 77.4
MsG0280006570.01.T01 AT5G19860 29.204 113 80 0 352 464 31 143 1.16e-13 69.7

Find 111 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATCATACACGTGATATTT+TGG 0.147255 2:+3580865 None:intergenic
CTTGAATCATAGGCATAATT+TGG 0.169510 2:+3580970 None:intergenic
TCCTATTCTGGATCTGATTA+TGG 0.249805 2:-3581081 MsG0280006570.01.T01:CDS
ACTACTTCATTAGCTTCTTA+TGG 0.252002 2:-3576226 MsG0280006570.01.T01:intron
CCTCAATATCCTAGTGGATA+TGG 0.262399 2:-3580336 MsG0280006570.01.T01:CDS
CTCCTTCTCCACCATGGATA+TGG 0.272583 2:+3580157 None:intergenic
GGTCTCATTCTTATTGATAT+TGG 0.281747 2:-3575862 MsG0280006570.01.T01:CDS
TTACCTTGGGATCTACAAAT+TGG 0.285268 2:+3575797 None:intergenic
TGTGGCTTTCTACAGCATTT+TGG 0.287786 2:+3580521 None:intergenic
TACTACAACTCTTCCTATTC+TGG 0.299587 2:-3581093 MsG0280006570.01.T01:CDS
GATATTTGTGAAAGCTTGTT+TGG 0.300100 2:-3580300 MsG0280006570.01.T01:CDS
GTTCGTGCTAATCTTAGTTT+TGG 0.308090 2:-3575973 MsG0280006570.01.T01:CDS
TTTGGATCAAAGTGGTGTTT+TGG 0.312414 2:-3576058 MsG0280006570.01.T01:CDS
TTTACCGGTGGGGCTATTTC+CGG 0.316010 2:-3576100 MsG0280006570.01.T01:CDS
ATTGGAATTGGAATTGGAAT+TGG 0.320871 2:+3580616 None:intergenic
AAAATTTGCTATCCTCGTTC+TGG 0.337505 2:-3580700 MsG0280006570.01.T01:CDS
GAGTGTAAAATCATACAATT+TGG 0.342640 2:-3576076 MsG0280006570.01.T01:CDS
GAGACTGCAGATTATTGTTT+GGG 0.343085 2:-3580183 MsG0280006570.01.T01:CDS
AGAGACTGCAGATTATTGTT+TGG 0.354341 2:-3580184 MsG0280006570.01.T01:CDS
AGAGGAATTGGAATTGGAAT+TGG 0.356101 2:+3580610 None:intergenic
TCTTCGCGGCCATGGTTTAC+CGG 0.359792 2:-3576115 MsG0280006570.01.T01:CDS
AAAATATGAACTTGAATCAT+AGG 0.365127 2:+3580960 None:intergenic
TACCTTGGGATCTACAAATT+GGG 0.365471 2:+3575798 None:intergenic
GTGAAAGCTTGTTTGGGACT+TGG 0.366700 2:-3580293 MsG0280006570.01.T01:CDS
ACAGGAAGAGGAAGAGGAAT+TGG 0.366963 2:+3580598 None:intergenic
GAATATGATCCAACACCTTA+TGG 0.367582 2:-3580775 MsG0280006570.01.T01:CDS
AGAGGAAGAGGAATTGGAAT+TGG 0.368214 2:+3580604 None:intergenic
ATTGAAGTTGGAGTTGGAAT+TGG 0.373367 2:+3580664 None:intergenic
ATACAATCATTTGAATTAAG+AGG 0.384029 2:-3578035 MsG0280006570.01.T01:CDS
GTTGGAGTTGGAGTTGGAAT+TGG 0.391393 2:+3580640 None:intergenic
GTTTGGTTATAACTATGATC+AGG 0.399077 2:+3580919 None:intergenic
AGCTGAGTCATACCATAATT+AGG 0.400526 2:+3580844 None:intergenic
TCTATTGATGGAAGTGGGTT+TGG 0.402997 2:-3580396 MsG0280006570.01.T01:CDS
TAGAGGATCCAATTTCATAA+AGG 0.421290 2:+3575766 None:intergenic
AGAAGGAGAGATGATGATTA+TGG 0.423859 2:-3580142 MsG0280006570.01.T01:CDS
CACGTGTATGATCCTAATTA+TGG 0.429116 2:-3580856 MsG0280006570.01.T01:CDS
GTTGGAATTGGAATTGAAGT+TGG 0.430086 2:+3580652 None:intergenic
CGCGGCCATGGTTTACCGGT+GGG 0.439172 2:-3576111 MsG0280006570.01.T01:CDS
CAAGAGGTTCTTCGCGGCCA+TGG 0.443893 2:-3576123 MsG0280006570.01.T01:CDS
ATATTTGTGAAAGCTTGTTT+GGG 0.444434 2:-3580299 MsG0280006570.01.T01:CDS
TATGGTGGAGAACTTGTCTA+TGG 0.446222 2:-3580124 MsG0280006570.01.T01:CDS
TACAATTCAGGGTCTATTGA+TGG 0.449578 2:-3580408 MsG0280006570.01.T01:intron
CATGTTGAGGGTGATGTTGT+TGG 0.454590 2:+3578012 None:intergenic
AAAGGGCGATTGATTACCTT+GGG 0.463557 2:+3575784 None:intergenic
TGGTCAGCTTAAAGGGTTGG+AGG 0.463812 2:-3575953 MsG0280006570.01.T01:CDS
AGAGGATCCAATTTCATAAA+GGG 0.468605 2:+3575767 None:intergenic
AGAATAGGAAGAGTTGTAGT+AGG 0.471440 2:+3581095 None:intergenic
ATTGGAGTTGGAGTTGGAGT+TGG 0.472065 2:+3580634 None:intergenic
AACGTTAAATTACATGTTGA+GGG 0.472744 2:+3578000 None:intergenic
GTTTCATACTTTACAATACA+AGG 0.475784 2:+3576018 None:intergenic
ATTGGAATTGAAGTTGGAGT+TGG 0.476828 2:+3580658 None:intergenic
ATTGGAATTGGAATTGGAGT+TGG 0.484671 2:+3580622 None:intergenic
TGTGCTATCTTATTCTACCT+TGG 0.484951 2:-3580821 MsG0280006570.01.T01:CDS
TCCACAATGATATCTTTAAC+CGG 0.485991 2:+3575898 None:intergenic
TCAGGGTCTATTGATGGAAG+TGG 0.486763 2:-3580402 MsG0280006570.01.T01:intron
ATTGTGGACGATCCTTCATC+AGG 0.488374 2:-3575883 MsG0280006570.01.T01:CDS
ATATCCTAGTGGATATGGAT+TGG 0.494935 2:-3580331 MsG0280006570.01.T01:CDS
TTTGTCTCTTCCACAGGAAG+AGG 0.495452 2:+3580586 None:intergenic
ATTGGAATTGGAGTTGGAGT+TGG 0.498415 2:+3580628 None:intergenic
GAAAATTGTTGTAATAATGT+AGG 0.500479 2:-3580246 MsG0280006570.01.T01:CDS
CCATATCCACTAGGATATTG+AGG 0.501136 2:+3580336 None:intergenic
TGGCAGAATATGCTATGGTT+TGG 0.503350 2:+3580902 None:intergenic
TGTTTGGGAGTCCATATCCA+TGG 0.504163 2:-3580168 MsG0280006570.01.T01:CDS
TAACGTTAAATTACATGTTG+AGG 0.507890 2:+3577999 None:intergenic
TATGACATTGATAAAACCTA+TGG 0.510181 2:-3580745 MsG0280006570.01.T01:CDS
TAAAGGGCGATTGATTACCT+TGG 0.511639 2:+3575783 None:intergenic
GTCCATATCCATGGTGGAGA+AGG 0.513080 2:-3580159 MsG0280006570.01.T01:CDS
GGTCAGCTTAAAGGGTTGGA+GGG 0.522153 2:-3575952 MsG0280006570.01.T01:CDS
AGGAGAGATGATGATTATGG+TGG 0.523737 2:-3580139 MsG0280006570.01.T01:CDS
ATGTCATATCCACCACCATA+AGG 0.523925 2:+3580760 None:intergenic
GGATCATATTCATCAAATGC+AGG 0.525290 2:+3580787 None:intergenic
TTGATTTCAATGATGAATCA+TGG 0.526074 2:-3580089 MsG0280006570.01.T01:intron
TGATCAGGGTAATTATTACT+AGG 0.526189 2:+3580934 None:intergenic
TCTTCCACAGGAAGAGGAAG+AGG 0.530204 2:+3580592 None:intergenic
TGCATATACTTCTCTTCAAG+AGG 0.532226 2:-3576139 MsG0280006570.01.T01:CDS
CAGGGTCTATTGATGGAAGT+GGG 0.533263 2:-3580401 MsG0280006570.01.T01:CDS
AATTCCTCTTCCTCTTCCTG+TGG 0.534737 2:-3580596 MsG0280006570.01.T01:CDS
CTATTGTAAGTCATAAAAGA+TGG 0.538921 2:+3581009 None:intergenic
ATAATTGTGAGGAGAATATG+TGG 0.547709 2:-3580209 MsG0280006570.01.T01:CDS
ACCATAATCAGATCCAGAAT+AGG 0.552094 2:+3581080 None:intergenic
TGGATATGGATTGGAAACAT+TGG 0.554357 2:-3580322 MsG0280006570.01.T01:CDS
ATAAGAATGAGACCTGATGA+AGG 0.556339 2:+3575871 None:intergenic
TGCAGGTTCATTGAATTCCA+AGG 0.556486 2:+3580804 None:intergenic
GATCCAACACCTTATGGTGG+TGG 0.558239 2:-3580769 MsG0280006570.01.T01:CDS
AGAAGTATATGCATCTATCA+CGG 0.558749 2:+3576149 None:intergenic
TCTCTTCAAGAGGTTCTTCG+CGG 0.565089 2:-3576129 MsG0280006570.01.T01:CDS
TTTGGTTATAACTATGATCA+GGG 0.567628 2:+3580920 None:intergenic
TCCCCAATTTGTAGATCCCA+AGG 0.567847 2:-3575800 MsG0280006570.01.T01:CDS
ACCTTGGGATCTACAAATTG+GGG 0.568523 2:+3575799 None:intergenic
TCGCGGCCATGGTTTACCGG+TGG 0.569910 2:-3576112 MsG0280006570.01.T01:CDS
GAAGTATATGCATCTATCAC+GGG 0.574392 2:+3576150 None:intergenic
AGTTGTGGCAGAATATGCTA+TGG 0.579454 2:+3580897 None:intergenic
CTCTCCGGAAATAGCCCCAC+CGG 0.594876 2:+3576096 None:intergenic
TATCCACCACCATAAGGTGT+TGG 0.605098 2:+3580766 None:intergenic
AATAATGTAGGCATTCATAG+AGG 0.611847 2:-3580234 MsG0280006570.01.T01:CDS
GCGGCCATGGTTTACCGGTG+GGG 0.617027 2:-3576110 MsG0280006570.01.T01:CDS
TCATCTCTCCTTCTCCACCA+TGG 0.617792 2:+3580151 None:intergenic
AACTTGTCTATGGCTATGAA+AGG 0.618083 2:-3580114 MsG0280006570.01.T01:CDS
TCATACAATTTGGATCAAAG+TGG 0.625021 2:-3576066 MsG0280006570.01.T01:CDS
TATCTTTAACCGGTAACCAA+AGG 0.627448 2:+3575908 None:intergenic
ACTCCTCCTCAATATCCTAG+TGG 0.627804 2:-3580342 MsG0280006570.01.T01:CDS
AGGTGCAAGAGGCTTACCAT+AGG 0.641236 2:+3580729 None:intergenic
GTTTCCAATCCATATCCACT+AGG 0.646059 2:+3580327 None:intergenic
GCGTGAGATTGAGATTGTGA+AGG 0.665697 2:-3580370 MsG0280006570.01.T01:CDS
ATAGCCCCACCGGTAAACCA+TGG 0.676378 2:+3576106 None:intergenic
TTGGGAGTCCATATCCATGG+TGG 0.678901 2:-3580165 MsG0280006570.01.T01:CDS
ATTGAAGTTGAACCAGAACG+AGG 0.688083 2:+3580688 None:intergenic
ACCGGTTAAAGATATCATTG+TGG 0.698910 2:-3575899 MsG0280006570.01.T01:CDS
TCATAGAGGAAATAATTGTG+AGG 0.703356 2:-3580220 MsG0280006570.01.T01:CDS
TATCCACTAGGATATTGAGG+AGG 0.717763 2:+3580339 None:intergenic
TATGATCCAACACCTTATGG+TGG 0.731194 2:-3580772 MsG0280006570.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAAATATTATAAAAT+TGG + Chr2:3579012-3579031 None:intergenic 0.0%
!! AAAAATACAAGAATAATAAT+AGG - Chr2:3578100-3578119 MsG0280006570.01.T01:intron 10.0%
!!! TTTTTAATTTAACTATTCTT+TGG + Chr2:3580085-3580104 None:intergenic 10.0%
!! AAATTGTTTAAAAAATTCGA+TGG + Chr2:3578170-3578189 None:intergenic 15.0%
!! AATAAAAAACAATTGAAGAA+CGG + Chr2:3578702-3578721 None:intergenic 15.0%
!! ATAAAAATAATTAATCATGC+CGG + Chr2:3580216-3580235 None:intergenic 15.0%
!! ATAAATAAAAAATGAGTACA+AGG - Chr2:3578914-3578933 MsG0280006570.01.T01:intron 15.0%
!! GTAATCAATTATTATTATGA+TGG + Chr2:3580311-3580330 None:intergenic 15.0%
!! TAAATAAAAAATGAGTACAA+GGG - Chr2:3578915-3578934 MsG0280006570.01.T01:intron 15.0%
!! TATATTTAATAAAGATAGGA+GGG - Chr2:3579233-3579252 MsG0280006570.01.T01:intron 15.0%
!! TTATATTTAATAAAGATAGG+AGG - Chr2:3579232-3579251 MsG0280006570.01.T01:intron 15.0%
!!! ATAGTAATATTTTTGTATGT+TGG + Chr2:3578449-3578468 None:intergenic 15.0%
!!! TATTTTTTTTTATTGTGTTC+TGG + Chr2:3578406-3578425 None:intergenic 15.0%
!!! TTCTTGTATTTTTTTTATCA+AGG + Chr2:3578093-3578112 None:intergenic 15.0%
!!! TTGAGAAGAATATTTTTAAA+AGG + Chr2:3577240-3577259 None:intergenic 15.0%
!!! TTGTAACATTTTCTATAAAT+AGG - Chr2:3579184-3579203 MsG0280006570.01.T01:intron 15.0%
!! AAAATATGAACTTGAATCAT+AGG + Chr2:3575922-3575941 None:intergenic 20.0%
!! AATTAACTACTACTAATCAA+AGG - Chr2:3579909-3579928 MsG0280006570.01.T01:intron 20.0%
!! ACATAAAATATCAACTTAAG+TGG - Chr2:3577484-3577503 MsG0280006570.01.T01:intron 20.0%
!! ATACAATCATTTGAATTAAG+AGG - Chr2:3578844-3578863 MsG0280006570.01.T01:intron 20.0%
!! CAAACATTGTATTAATCTAA+CGG - Chr2:3578567-3578586 MsG0280006570.01.T01:intron 20.0%
!! CAATTATTATTATGATGGTA+AGG + Chr2:3580306-3580325 None:intergenic 20.0%
!! GAAAATTGTTGTAATAATGT+AGG - Chr2:3576633-3576652 MsG0280006570.01.T01:intron 20.0%
!! TGATTTCTTAAGAGTTATTA+TGG - Chr2:3578721-3578740 MsG0280006570.01.T01:intron 20.0%
!!! AAATTTTACAAAAGTTTTGG+GGG - Chr2:3577687-3577706 MsG0280006570.01.T01:intron 20.0%
!!! AATGCTATCATTATTTTAAC+TGG + Chr2:3578963-3578982 None:intergenic 20.0%
!!! ACACCATGTTATATTTTATA+TGG - Chr2:3578143-3578162 MsG0280006570.01.T01:intron 20.0%
!!! AGAAAATGTTACAACTTTTA+GGG + Chr2:3579178-3579197 None:intergenic 20.0%
!!! ATAATTTCTAGGTTTTTGTT+TGG + Chr2:3580507-3580526 None:intergenic 20.0%
!!! ATATTTTGAGAAGTTTAGTT+AGG - Chr2:3579540-3579559 MsG0280006570.01.T01:intron 20.0%
!!! ATCTTTTTAATTAATGCCTA+TGG - Chr2:3579815-3579834 MsG0280006570.01.T01:intron 20.0%
!!! ATTCCATTTCTTTTAAGAAT+TGG - Chr2:3577143-3577162 MsG0280006570.01.T01:intron 20.0%
!!! CGAAATTTTACAAAAGTTTT+GGG - Chr2:3577685-3577704 MsG0280006570.01.T01:intron 20.0%
!!! GAAATTTTACAAAAGTTTTG+GGG - Chr2:3577686-3577705 MsG0280006570.01.T01:intron 20.0%
!!! GTTGATATTTTATGTTGAAT+CGG + Chr2:3577479-3577498 None:intergenic 20.0%
!!! TAATTACGCTGATTATATTA+TGG + Chr2:3579786-3579805 None:intergenic 20.0%
!!! TAGAAAATGTTACAACTTTT+AGG + Chr2:3579179-3579198 None:intergenic 20.0%
!!! TCGAAATTTTACAAAAGTTT+TGG - Chr2:3577684-3577703 MsG0280006570.01.T01:intron 20.0%
!!! TTTATTCCTTTTTTCAACTT+TGG - Chr2:3580348-3580367 MsG0280006570.01.T01:CDS 20.0%
! AAAAGATGATGATACAATTC+AGG - Chr2:3576459-3576478 MsG0280006570.01.T01:intron 25.0%
! AAACACATTAGAAATCGTAA+AGG - Chr2:3580175-3580194 MsG0280006570.01.T01:CDS 25.0%
! AAAGATGATGATACAATTCA+GGG - Chr2:3576460-3576479 MsG0280006570.01.T01:intron 25.0%
! AAATATTACTATATCTCTCC+CGG - Chr2:3578457-3578476 MsG0280006570.01.T01:intron 25.0%
! AACGTTAAATTACATGTTGA+GGG + Chr2:3578882-3578901 None:intergenic 25.0%
! AAGAGAAGAATTGATATGAT+TGG - Chr2:3580027-3580046 MsG0280006570.01.T01:intron 25.0%
! ACTATACAAAACATAAAGAG+TGG - Chr2:3578330-3578349 MsG0280006570.01.T01:intron 25.0%
! AGATGACAATATGATAGATT+TGG + Chr2:3577306-3577325 None:intergenic 25.0%
! ATATTTGTGATTAGAGGATT+AGG - Chr2:3577873-3577892 MsG0280006570.01.T01:intron 25.0%
! ATCCTCTAATCACAAATATT+TGG + Chr2:3577872-3577891 None:intergenic 25.0%
! ATGAAAATAAAATGCAAACC+AGG + Chr2:3578068-3578087 None:intergenic 25.0%
! ATTCAAAAATAGCTAACTCT+AGG - Chr2:3577061-3577080 MsG0280006570.01.T01:intron 25.0%
! CGTTAGATTAATACAATGTT+TGG + Chr2:3578569-3578588 None:intergenic 25.0%
! CTATTGTAAGTCATAAAAGA+TGG + Chr2:3575873-3575892 None:intergenic 25.0%
! GAGTGTAAAATCATACAATT+TGG - Chr2:3580803-3580822 MsG0280006570.01.T01:CDS 25.0%
! GGACAATTGATATAATTTCT+AGG + Chr2:3580518-3580537 None:intergenic 25.0%
! GGACCATATAAAATATAACA+TGG + Chr2:3578149-3578168 None:intergenic 25.0%
! GTTTCATACTTTACAATACA+AGG + Chr2:3580864-3580883 None:intergenic 25.0%
! TAACGTTAAATTACATGTTG+AGG + Chr2:3578883-3578902 None:intergenic 25.0%
! TACTATAAAAGAAACTAGTG+AGG - Chr2:3576393-3576412 MsG0280006570.01.T01:intron 25.0%
! TATGACATTGATAAAACCTA+TGG - Chr2:3576134-3576153 MsG0280006570.01.T01:CDS 25.0%
! TATGATTGGTATTTAGAAGT+GGG + Chr2:3580550-3580569 None:intergenic 25.0%
! TATTATTACACTAAAACTGC+AGG + Chr2:3576924-3576943 None:intergenic 25.0%
! TATTCTTCTCAAAACATATG+AGG - Chr2:3577248-3577267 MsG0280006570.01.T01:intron 25.0%
! TCAAGAGTAAAAAAGATTGT+TGG + Chr2:3579638-3579657 None:intergenic 25.0%
! TCCTCTAATCACAAATATTT+GGG + Chr2:3577871-3577890 None:intergenic 25.0%
! TCTCCAATTCTTAAAAGAAA+TGG + Chr2:3577149-3577168 None:intergenic 25.0%
! TGAAGATAGTGATTATAATG+AGG - Chr2:3576435-3576454 MsG0280006570.01.T01:intron 25.0%
! TGAATTCATATTTGTGAATG+TGG + Chr2:3577101-3577120 None:intergenic 25.0%
! TGCTTTATAAAGATCTCTTA+AGG - Chr2:3579682-3579701 MsG0280006570.01.T01:intron 25.0%
! TGGATAGCAAATATAGTATT+TGG + Chr2:3578429-3578448 None:intergenic 25.0%
! TGTAACAATTTGATTCAAAG+AGG - Chr2:3576863-3576882 MsG0280006570.01.T01:intron 25.0%
! TGTCTGTTTAGATTTCTTTA+GGG - Chr2:3577934-3577953 MsG0280006570.01.T01:intron 25.0%
! TTCAAAAATAGCTAACTCTA+GGG - Chr2:3577062-3577081 MsG0280006570.01.T01:intron 25.0%
! TTGAAGAACTCATATAACTA+GGG + Chr2:3577591-3577610 None:intergenic 25.0%
! TTGATTTCAATGATGAATCA+TGG - Chr2:3576790-3576809 MsG0280006570.01.T01:intron 25.0%
! TTTGAAGAACTCATATAACT+AGG + Chr2:3577592-3577611 None:intergenic 25.0%
! TTTGGTTATAACTATGATCA+GGG + Chr2:3575962-3575981 None:intergenic 25.0%
! TTTGTTAATTTCACATGTAC+AGG - Chr2:3580455-3580474 MsG0280006570.01.T01:intron 25.0%
!! ATATTTGTGAAAGCTTGTTT+GGG - Chr2:3576580-3576599 MsG0280006570.01.T01:intron 25.0%
!!! AATTTTACAAAAGTTTTGGG+GGG - Chr2:3577688-3577707 MsG0280006570.01.T01:intron 25.0%
!!! ATAGTTTAAGTTGTAGTTCT+AGG + Chr2:3577538-3577557 None:intergenic 25.0%
!!! ATATGATTTTGTTCTGAGTA+GGG - Chr2:3577333-3577352 MsG0280006570.01.T01:intron 25.0%
!!! CTATTTTTGAACACTATGAT+TGG + Chr2:3580564-3580583 None:intergenic 25.0%
!!! TATATGATTTTGTTCTGAGT+AGG - Chr2:3577332-3577351 MsG0280006570.01.T01:intron 25.0%
!!! TTCTTAGGGTTTTGTATAAT+TGG + Chr2:3579322-3579341 None:intergenic 25.0%
AATAATGTAGGCATTCATAG+AGG - Chr2:3576645-3576664 MsG0280006570.01.T01:intron 30.0%
AATATTACTATATCTCTCCC+GGG - Chr2:3578458-3578477 MsG0280006570.01.T01:intron 30.0%
ACCTATTTACACAAGAAAGA+AGG + Chr2:3578033-3578052 None:intergenic 30.0%
AGAATTTGGTTAAGCTTCTT+AGG + Chr2:3579337-3579356 None:intergenic 30.0%
ATAATTGTGAGGAGAATATG+TGG - Chr2:3576670-3576689 MsG0280006570.01.T01:intron 30.0%
ATACAAACTCGCTCAAAAAA+GGG - Chr2:3577829-3577848 MsG0280006570.01.T01:intron 30.0%
ATAGTACTATCTTGTAACTG+TGG + Chr2:3576379-3576398 None:intergenic 30.0%
ATATAAAGCTGGATAGAGAT+AGG + Chr2:3579133-3579152 None:intergenic 30.0%
ATGTTGAATCGGCTAAAAAA+TGG + Chr2:3577468-3577487 None:intergenic 30.0%
ATTGGAATTGGAATTGGAAT+TGG + Chr2:3576266-3576285 None:intergenic 30.0%
CAATGTTCAATGTAAATTGC+AGG + Chr2:3577023-3577042 None:intergenic 30.0%
CCTATTTACACAAGAAAGAA+GGG + Chr2:3578032-3578051 None:intergenic 30.0%
CGATATCACAAGAATATAGT+CGG + Chr2:3578806-3578825 None:intergenic 30.0%
CTATGATTGGTATTTAGAAG+TGG + Chr2:3580551-3580570 None:intergenic 30.0%
CTTGAATCATAGGCATAATT+TGG + Chr2:3575912-3575931 None:intergenic 30.0%
GAATTTGGTTAAGCTTCTTA+GGG + Chr2:3579336-3579355 None:intergenic 30.0%
GATAGAGATAGGATATGATA+AGG + Chr2:3579122-3579141 None:intergenic 30.0%
GGTCTCATTCTTATTGATAT+TGG - Chr2:3581017-3581036 MsG0280006570.01.T01:CDS 30.0%
GTGTCTGTTTAGATTTCTTT+AGG - Chr2:3577933-3577952 MsG0280006570.01.T01:intron 30.0%
GTTGAAAGATAAATGCTTTG+TGG + Chr2:3578784-3578803 None:intergenic 30.0%
GTTTAAGCAAAGTATAGAAG+TGG + Chr2:3579879-3579898 None:intergenic 30.0%
GTTTGGTTATAACTATGATC+AGG + Chr2:3575963-3575982 None:intergenic 30.0%
TAAAATGCAAACCAGGATTA+AGG + Chr2:3578061-3578080 None:intergenic 30.0%
TAAAGCAACAAAAAGCAAAG+AGG + Chr2:3577993-3578012 None:intergenic 30.0%
TATAACTAGGGTGGTAAAAT+AGG + Chr2:3577579-3577598 None:intergenic 30.0%
TCATACAATTTGGATCAAAG+TGG - Chr2:3580813-3580832 MsG0280006570.01.T01:CDS 30.0%
TCATAGAGGAAATAATTGTG+AGG - Chr2:3576659-3576678 MsG0280006570.01.T01:intron 30.0%
TCCAACTTAAGATACTTAAG+CGG + Chr2:3579603-3579622 None:intergenic 30.0%
TCCACAATGATATCTTTAAC+CGG + Chr2:3580984-3581003 None:intergenic 30.0%
TCCACCATATTCAAAATGAT+CGG - Chr2:3580251-3580270 MsG0280006570.01.T01:CDS 30.0%
TCCCAAATATTTGTGATTAG+AGG - Chr2:3577867-3577886 MsG0280006570.01.T01:intron 30.0%
TGATCAGGGTAATTATTACT+AGG + Chr2:3575948-3575967 None:intergenic 30.0%
TGATGGTAAGGAAAATTAGT+TGG + Chr2:3580294-3580313 None:intergenic 30.0%
TTAACTATTCTTTGGCACTT+TGG + Chr2:3580077-3580096 None:intergenic 30.0%
TTCAATTCACCTATCTAAGT+TGG + Chr2:3577431-3577450 None:intergenic 30.0%
TTTCTTGTGTAAATAGGTTC+AGG - Chr2:3578035-3578054 MsG0280006570.01.T01:CDS 30.0%
! ACTACTTCATTAGCTTCTTA+TGG - Chr2:3580653-3580672 MsG0280006570.01.T01:CDS 30.0%
! AGAAGTATATGCATCTATCA+CGG + Chr2:3580733-3580752 None:intergenic 30.0%
! CTTTGTCTTCATCTTTTGAT+GGG + Chr2:3580010-3580029 None:intergenic 30.0%
! GATACCGATCATTTTGAATA+TGG + Chr2:3580258-3580277 None:intergenic 30.0%
! GATATTTGTGAAAGCTTGTT+TGG - Chr2:3576579-3576598 MsG0280006570.01.T01:intron 30.0%
! GGATAGCAAATTTTATCTGA+AGG + Chr2:3576173-3576192 None:intergenic 30.0%
! GGTGTCTGAAAATATACTTT+TGG - Chr2:3577204-3577223 MsG0280006570.01.T01:intron 30.0%
! GTTTGGATTTTATTGTTGAG+AGG + Chr2:3578552-3578571 None:intergenic 30.0%
! TCTTTGTCTTCATCTTTTGA+TGG + Chr2:3580011-3580030 None:intergenic 30.0%
! TGGATCAACCTATTTAAAGT+GGG - Chr2:3577401-3577420 MsG0280006570.01.T01:intron 30.0%
! TTACGCTGATTATATTATGG+TGG + Chr2:3579783-3579802 None:intergenic 30.0%
! TTGTATGATTTTACACTCTC+CGG + Chr2:3580801-3580820 None:intergenic 30.0%
! TTTGTCTTCATCTTTTGATG+GGG + Chr2:3580009-3580028 None:intergenic 30.0%
! TTTTGGATCACTAAAAGTTG+TGG + Chr2:3576000-3576019 None:intergenic 30.0%
!! AAATTAGTTGGTTTGTTTGG+TGG + Chr2:3580282-3580301 None:intergenic 30.0%
!! CTCTTCATTTTTGACAAACA+AGG + Chr2:3576612-3576631 None:intergenic 30.0%
!! GGAAAATTAGTTGGTTTGTT+TGG + Chr2:3580285-3580304 None:intergenic 30.0%
!!! ACACAGAATAAGGTTTTAAG+AGG + Chr2:3580612-3580631 None:intergenic 30.0%
!!! AGGTTTTAAGAGGGTTTTTA+AGG + Chr2:3580602-3580621 None:intergenic 30.0%
!!! CACAGAATAAGGTTTTAAGA+GGG + Chr2:3580611-3580630 None:intergenic 30.0%
!!! TCTTTGCTTTTTGTTGCTTT+AGG - Chr2:3577992-3578011 MsG0280006570.01.T01:intron 30.0%
!!! TTAGTTTTGGTCAGCTTAAA+GGG - Chr2:3580919-3580938 MsG0280006570.01.T01:CDS 30.0%
AACAGAATTCTAAGCGATCT+TGG + Chr2:3579362-3579381 None:intergenic 35.0%
AACTTGTCTATGGCTATGAA+AGG - Chr2:3576765-3576784 MsG0280006570.01.T01:intron 35.0%
AAGAACTCATATAACTAGGG+TGG + Chr2:3577588-3577607 None:intergenic 35.0%
AAGCGATCTTGGATAGAATT+TGG + Chr2:3579351-3579370 None:intergenic 35.0%
AATCGGCTAAAAAATGGTGT+GGG + Chr2:3577462-3577481 None:intergenic 35.0%
ACAATCATAGATTGTAACGC+AGG - Chr2:3580428-3580447 MsG0280006570.01.T01:intron 35.0%
ACAGCTCCAAAGTTGAAAAA+AGG + Chr2:3580357-3580376 None:intergenic 35.0%
ACCATAATCAGATCCAGAAT+AGG + Chr2:3575802-3575821 None:intergenic 35.0%
ACCGCTTAAGTATCTTAAGT+TGG - Chr2:3579599-3579618 MsG0280006570.01.T01:intron 35.0%
ACCGGTTAAAGATATCATTG+TGG - Chr2:3580980-3580999 MsG0280006570.01.T01:CDS 35.0%
ACTTAAACTATCTGACCCAT+TGG - Chr2:3577547-3577566 MsG0280006570.01.T01:intron 35.0%
AGAACGGTTCACTACAATTT+CGG + Chr2:3578686-3578705 None:intergenic 35.0%
AGAAGGAGAGATGATGATTA+TGG - Chr2:3576737-3576756 MsG0280006570.01.T01:intron 35.0%
AGAATAGGAAGAGTTGTAGT+AGG + Chr2:3575787-3575806 None:intergenic 35.0%
AGAGACTGCAGATTATTGTT+TGG - Chr2:3576695-3576714 MsG0280006570.01.T01:intron 35.0%
AGAGGAATTGGAATTGGAAT+TGG + Chr2:3576272-3576291 None:intergenic 35.0%
AGCTGAGTCATACCATAATT+AGG + Chr2:3576038-3576057 None:intergenic 35.0%
ATAAGAATGAGACCTGATGA+AGG + Chr2:3581011-3581030 None:intergenic 35.0%
ATTGAAGTTGGAGTTGGAAT+TGG + Chr2:3576218-3576237 None:intergenic 35.0%
ATTGGAATTGAAGTTGGAGT+TGG + Chr2:3576224-3576243 None:intergenic 35.0%
ATTGGAATTGGAATTGGAGT+TGG + Chr2:3576260-3576279 None:intergenic 35.0%
CAAATCAAACGCACCATATA+TGG + Chr2:3578244-3578263 None:intergenic 35.0%
CAATCATAGATTGTAACGCA+GGG - Chr2:3580429-3580448 MsG0280006570.01.T01:intron 35.0%
CAATCTATGATTGTTGTCTG+AGG + Chr2:3580422-3580441 None:intergenic 35.0%
CAATGATGAATCATGGTGAA+TGG - Chr2:3576797-3576816 MsG0280006570.01.T01:intron 35.0%
CACGTGTATGATCCTAATTA+TGG - Chr2:3576023-3576042 MsG0280006570.01.T01:CDS 35.0%
CAGATCCTGATATGATATAC+TGG + Chr2:3578500-3578519 None:intergenic 35.0%
CAGTATATCATATCAGGATC+TGG - Chr2:3578498-3578517 MsG0280006570.01.T01:intron 35.0%
CATACAAACTCGCTCAAAAA+AGG - Chr2:3577828-3577847 MsG0280006570.01.T01:intron 35.0%
CCCTTCTTTCTTGTGTAAAT+AGG - Chr2:3578029-3578048 MsG0280006570.01.T01:CDS 35.0%
CTGATATGATATACTGGACA+CGG + Chr2:3578494-3578513 None:intergenic 35.0%
GAAGTATATGCATCTATCAC+GGG + Chr2:3580732-3580751 None:intergenic 35.0%
GAATATGATCCAACACCTTA+TGG - Chr2:3576104-3576123 MsG0280006570.01.T01:CDS 35.0%
GAGACTGCAGATTATTGTTT+GGG - Chr2:3576696-3576715 MsG0280006570.01.T01:intron 35.0%
GCTTTGATTGATCTAGAAAC+TGG - Chr2:3578300-3578319 MsG0280006570.01.T01:intron 35.0%
GGATCATATTCATCAAATGC+AGG + Chr2:3576095-3576114 None:intergenic 35.0%
GTCAGGATATGATATAAAGC+TGG + Chr2:3579144-3579163 None:intergenic 35.0%
GTGGATCAACCTATTTAAAG+TGG - Chr2:3577400-3577419 MsG0280006570.01.T01:intron 35.0%
GTTGGAATTGGAATTGAAGT+TGG + Chr2:3576206-3576225 None:intergenic 35.0%
TAAAATAGGTCCAGACCAAT+GGG + Chr2:3577565-3577584 None:intergenic 35.0%
TACAATTCAGGGTCTATTGA+TGG - Chr2:3576471-3576490 MsG0280006570.01.T01:intron 35.0%
TACCTTGGGATCTACAAATT+GGG + Chr2:3581084-3581103 None:intergenic 35.0%
TACTACAACTCTTCCTATTC+TGG - Chr2:3575786-3575805 MsG0280006570.01.T01:CDS 35.0%
TATCTTTAACCGGTAACCAA+AGG + Chr2:3580974-3580993 None:intergenic 35.0%
TCCTATTCTGGATCTGATTA+TGG - Chr2:3575798-3575817 MsG0280006570.01.T01:CDS 35.0%
TGCATATACTTCTCTTCAAG+AGG - Chr2:3580740-3580759 MsG0280006570.01.T01:CDS 35.0%
TGGACAAAAAAGTTGTCTCA+TGG + Chr2:3578386-3578405 None:intergenic 35.0%
TGTGCTATCTTATTCTACCT+TGG - Chr2:3576058-3576077 MsG0280006570.01.T01:CDS 35.0%
TTACCTTGGGATCTACAAAT+TGG + Chr2:3581085-3581104 None:intergenic 35.0%
TTGGATTTGCAAACACAAAC+TGG + Chr2:3578753-3578772 None:intergenic 35.0%
TTGTGATTAGAGGATTAGGA+TGG - Chr2:3577877-3577896 MsG0280006570.01.T01:intron 35.0%
TTTACGAATCAAACTCACCT+AGG - Chr2:3579284-3579303 MsG0280006570.01.T01:intron 35.0%
TTTACTCTTGATCCAACTCT+AGG - Chr2:3579647-3579666 MsG0280006570.01.T01:intron 35.0%
! ACCGATCATTTTGAATATGG+TGG + Chr2:3580255-3580274 None:intergenic 35.0%
! AGGTTGATCCACAAATGTAA+GGG + Chr2:3577392-3577411 None:intergenic 35.0%
! AGTAGTAGAGCTTTTGAATG+TGG + Chr2:3580639-3580658 None:intergenic 35.0%
! ATATCCTAGTGGATATGGAT+TGG - Chr2:3576548-3576567 MsG0280006570.01.T01:intron 35.0%
! ATTGGTAACCTCTTATACCT+AGG + Chr2:3579304-3579323 None:intergenic 35.0%
! GGATCAACCTATTTAAAGTG+GGG - Chr2:3577402-3577421 MsG0280006570.01.T01:intron 35.0%
! GGATCATACACGTGATATTT+TGG + Chr2:3576017-3576036 None:intergenic 35.0%
! GTTCGTGCTAATCTTAGTTT+TGG - Chr2:3580906-3580925 MsG0280006570.01.T01:CDS 35.0%
! TGGTCTATGGTTTCATTTTG+AGG + Chr2:3576341-3576360 None:intergenic 35.0%
! TTTGGATCAAAGTGGTGTTT+TGG - Chr2:3580821-3580840 MsG0280006570.01.T01:CDS 35.0%
!! AAAATTTGCTATCCTCGTTC+TGG - Chr2:3576179-3576198 MsG0280006570.01.T01:CDS 35.0%
!! ATTTTATCTGAAGGTGCAAG+AGG + Chr2:3576164-3576183 None:intergenic 35.0%
!! TAGGTTGATCCACAAATGTA+AGG + Chr2:3577393-3577412 None:intergenic 35.0%
!! TGGATATGGATTGGAAACAT+TGG - Chr2:3576557-3576576 MsG0280006570.01.T01:intron 35.0%
!! TGTGTTACTTAACTAACGCA+GGG + Chr2:3579433-3579452 None:intergenic 35.0%
!! TTCTACAGCATTTTGGTCTA+TGG + Chr2:3576354-3576373 None:intergenic 35.0%
!! TTGTGTTACTTAACTAACGC+AGG + Chr2:3579434-3579453 None:intergenic 35.0%
!!! AACTTTTAGGGCATGTTTGA+TGG + Chr2:3579166-3579185 None:intergenic 35.0%
!!! CAGGGGTATTTTTGGTATTT+CGG + Chr2:3579415-3579434 None:intergenic 35.0%
!!! CTTAGTTTTGGTCAGCTTAA+AGG - Chr2:3580918-3580937 MsG0280006570.01.T01:CDS 35.0%
!!! CTTGCAGTCATTTGCTTTTT+TGG - Chr2:3577961-3577980 MsG0280006570.01.T01:intron 35.0%
AAAGGGCGATTGATTACCTT+GGG + Chr2:3581098-3581117 None:intergenic 40.0%
ACAAACCCAGTAATGAAGCT+AGG - Chr2:3579742-3579761 MsG0280006570.01.T01:intron 40.0%
ACCTTGGGATCTACAAATTG+GGG + Chr2:3581083-3581102 None:intergenic 40.0%
AGAGGAAGAGGAATTGGAAT+TGG + Chr2:3576278-3576297 None:intergenic 40.0%
AGGAGAGATGATGATTATGG+TGG - Chr2:3576740-3576759 MsG0280006570.01.T01:intron 40.0%
AGTTGTCTCATGGTTTAGTG+AGG + Chr2:3578376-3578395 None:intergenic 40.0%
AGTTGTGGCAGAATATGCTA+TGG + Chr2:3575985-3576004 None:intergenic 40.0%
ATCTAAACAGACACAACAGC+AGG + Chr2:3577927-3577946 None:intergenic 40.0%
ATGCTTTGTGGCATCACAAT+TGG + Chr2:3578772-3578791 None:intergenic 40.0%
ATGTCATATCCACCACCATA+AGG + Chr2:3576122-3576141 None:intergenic 40.0%
ATGTGGACAGACACAGAATA+AGG + Chr2:3580622-3580641 None:intergenic 40.0%
ATTGAAGTTGAACCAGAACG+AGG + Chr2:3576194-3576213 None:intergenic 40.0%
ATTGGAATTGGAGTTGGAGT+TGG + Chr2:3576254-3576273 None:intergenic 40.0%
CAAACCCAGTAATGAAGCTA+GGG - Chr2:3579743-3579762 MsG0280006570.01.T01:intron 40.0%
CAAACTCACCTAGGTATAAG+AGG - Chr2:3579293-3579312 MsG0280006570.01.T01:intron 40.0%
CACCATATATGGCATCAGAT+GGG + Chr2:3578233-3578252 None:intergenic 40.0%
CCATATCCACTAGGATATTG+AGG + Chr2:3576546-3576565 None:intergenic 40.0%
CGTGTCCAGTATATCATATC+AGG - Chr2:3578492-3578511 MsG0280006570.01.T01:intron 40.0%
GAAACTAGTGAGGCTTATGA+AGG - Chr2:3576403-3576422 MsG0280006570.01.T01:intron 40.0%
GAATCGGCTAAAAAATGGTG+TGG + Chr2:3577463-3577482 None:intergenic 40.0%
GACAAAGCATGACTTGACTT+TGG - Chr2:3579968-3579987 MsG0280006570.01.T01:intron 40.0%
GAGAGGATTGAGAAAATAGC+CGG + Chr2:3578535-3578554 None:intergenic 40.0%
GCATGTTTACGTGATTACAG+TGG - Chr2:3579851-3579870 MsG0280006570.01.T01:intron 40.0%
GCTAAAAAATGGTGTGGGAT+GGG + Chr2:3577457-3577476 None:intergenic 40.0%
GGATGTGTGAGTTAAAGTGT+TGG + Chr2:3577517-3577536 None:intergenic 40.0%
GTAAAATAGGTCCAGACCAA+TGG + Chr2:3577566-3577585 None:intergenic 40.0%
GTTGTCTCATGGTTTAGTGA+GGG + Chr2:3578375-3578394 None:intergenic 40.0%
GTTTCCAATCCATATCCACT+AGG + Chr2:3576555-3576574 None:intergenic 40.0%
TAAAGGGCGATTGATTACCT+TGG + Chr2:3581099-3581118 None:intergenic 40.0%
TAATCCTAGCTTCCTAGAGT+TGG + Chr2:3579662-3579681 None:intergenic 40.0%
TATCCACTAGGATATTGAGG+AGG + Chr2:3576543-3576562 None:intergenic 40.0%
TATGATCCAACACCTTATGG+TGG - Chr2:3576107-3576126 MsG0280006570.01.T01:CDS 40.0%
TCATGCTTTGTCGAATGTTG+TGG + Chr2:3579960-3579979 None:intergenic 40.0%
TGCAGGTTCATTGAATTCCA+AGG + Chr2:3576078-3576097 None:intergenic 40.0%
TGGCAGAATATGCTATGGTT+TGG + Chr2:3575980-3575999 None:intergenic 40.0%
TTCTGAGTAGGGTGACAAAA+CGG - Chr2:3577344-3577363 MsG0280006570.01.T01:intron 40.0%
TTGATCCACAAATGTAAGGG+CGG + Chr2:3577389-3577408 None:intergenic 40.0%
TTGGCAACCCCACTTTAAAT+AGG + Chr2:3577412-3577431 None:intergenic 40.0%
TTGGGGGGATTATACTAATG+AGG - Chr2:3577703-3577722 MsG0280006570.01.T01:intron 40.0%
! AGAGCTTTTCCTTTGGTTAC+CGG - Chr2:3580962-3580981 MsG0280006570.01.T01:CDS 40.0%
! CCTCAATATCCTAGTGGATA+TGG - Chr2:3576543-3576562 MsG0280006570.01.T01:intron 40.0%
! CTCAAGAAGAGCTTTTCCTT+TGG - Chr2:3580955-3580974 MsG0280006570.01.T01:CDS 40.0%
! TAAACAATTTTCCCCCACCT+CGG - Chr2:3578180-3578199 MsG0280006570.01.T01:intron 40.0%
! TATGGTGGAGAACTTGTCTA+TGG - Chr2:3576755-3576774 MsG0280006570.01.T01:intron 40.0%
! TCTATTGATGGAAGTGGGTT+TGG - Chr2:3576483-3576502 MsG0280006570.01.T01:intron 40.0%
! TGCTCACTACTTGTGCTTTT+TGG + Chr2:3577808-3577827 None:intergenic 40.0%
! TGTGGCTTTCTACAGCATTT+TGG + Chr2:3576361-3576380 None:intergenic 40.0%
! TTTTGGTCAGCTTAAAGGGT+TGG - Chr2:3580923-3580942 MsG0280006570.01.T01:CDS 40.0%
!! AAGGCAACGTTGTTTTCAAC+CGG - Chr2:3580194-3580213 MsG0280006570.01.T01:CDS 40.0%
!! CCTTAATTTGCGCTTGGAAT+GGG + Chr2:3580054-3580073 None:intergenic 40.0%
!! GTGTTACTTAACTAACGCAG+GGG + Chr2:3579432-3579451 None:intergenic 40.0%
!! TCAAGTTTTGTCTCTTCCAC+AGG + Chr2:3576302-3576321 None:intergenic 40.0%
!!! AACTAACGCAGGGGTATTTT+TGG + Chr2:3579423-3579442 None:intergenic 40.0%
!!! CAGTCATTTGCTTTTTTGGC+AGG - Chr2:3577965-3577984 MsG0280006570.01.T01:intron 40.0%
!!! TGGTGTTTTGGAAGTGAAGT+TGG - Chr2:3580833-3580852 MsG0280006570.01.T01:CDS 40.0%
AACTATCTGACCCATTGGTC+TGG - Chr2:3577552-3577571 MsG0280006570.01.T01:intron 45.0%
AAGGCCCTAGCTTCATTACT+GGG + Chr2:3579750-3579769 None:intergenic 45.0%
AATTCCTCTTCCTCTTCCTG+TGG - Chr2:3576283-3576302 MsG0280006570.01.T01:intron 45.0%
ACAGGAAGAGGAAGAGGAAT+TGG + Chr2:3576284-3576303 None:intergenic 45.0%
ACTCCTCCTCAATATCCTAG+TGG - Chr2:3576537-3576556 MsG0280006570.01.T01:intron 45.0%
AGGCACGAGCAAAATGTGTT+GGG - Chr2:3579560-3579579 MsG0280006570.01.T01:intron 45.0%
ATAGGTTCAGGCCTTAATCC+TGG - Chr2:3578047-3578066 MsG0280006570.01.T01:intron 45.0%
ATTGGAGTTGGAGTTGGAGT+TGG + Chr2:3576248-3576267 None:intergenic 45.0%
ATTGTGGACGATCCTTCATC+AGG - Chr2:3580996-3581015 MsG0280006570.01.T01:CDS 45.0%
CAAGAAAGAAGGGAAGCCTA+AGG + Chr2:3578022-3578041 None:intergenic 45.0%
CACTACAATTTCGGCGAGAA+TGG + Chr2:3578677-3578696 None:intergenic 45.0%
CAGGGTCTATTGATGGAAGT+GGG - Chr2:3576478-3576497 MsG0280006570.01.T01:intron 45.0%
CATGTTGAGGGTGATGTTGT+TGG + Chr2:3578870-3578889 None:intergenic 45.0%
CCCATTCCAAGCGCAAATTA+AGG - Chr2:3580051-3580070 MsG0280006570.01.T01:intron 45.0%
GAATGGTTTCGTGCGACATA+AGG + Chr2:3578660-3578679 None:intergenic 45.0%
GAGAAAATAGCCGGATTGAG+AGG + Chr2:3578526-3578545 None:intergenic 45.0%
GAGCGTGAGCAAAATGTGTT+GGG + Chr2:3579390-3579409 None:intergenic 45.0%
GCACCATATATGGCATCAGA+TGG + Chr2:3578234-3578253 None:intergenic 45.0%
GCGTGAGATTGAGATTGTGA+AGG - Chr2:3576509-3576528 MsG0280006570.01.T01:intron 45.0%
GGCTAAAAAATGGTGTGGGA+TGG + Chr2:3577458-3577477 None:intergenic 45.0%
GTGCGCATCAAACACATGAT+AGG - Chr2:3579084-3579103 MsG0280006570.01.T01:intron 45.0%
GTTGGAGTTGGAGTTGGAAT+TGG + Chr2:3576242-3576261 None:intergenic 45.0%
TAAGGCCCTAGCTTCATTAC+TGG + Chr2:3579751-3579770 None:intergenic 45.0%
TAATCACGTAAACATGCGCG+CGG + Chr2:3579848-3579867 None:intergenic 45.0%
TAGGCACGAGCAAAATGTGT+TGG - Chr2:3579559-3579578 MsG0280006570.01.T01:intron 45.0%
TATCCACCACCATAAGGTGT+TGG + Chr2:3576116-3576135 None:intergenic 45.0%
TCAGCGCAGCTAACAACAAA+AGG - Chr2:3577752-3577771 MsG0280006570.01.T01:intron 45.0%
TCAGGGTCTATTGATGGAAG+TGG - Chr2:3576477-3576496 MsG0280006570.01.T01:intron 45.0%
TCCCCAATTTGTAGATCCCA+AGG - Chr2:3581079-3581098 MsG0280006570.01.T01:CDS 45.0%
TCTCTTCAAGAGGTTCTTCG+CGG - Chr2:3580750-3580769 MsG0280006570.01.T01:CDS 45.0%
TGAGCGTGAGCAAAATGTGT+TGG + Chr2:3579391-3579410 None:intergenic 45.0%
TGATCCACAAATGTAAGGGC+GGG + Chr2:3577388-3577407 None:intergenic 45.0%
TGCTTTGTCGAATGTTGTGG+AGG + Chr2:3579957-3579976 None:intergenic 45.0%
TGTTTGGGAGTCCATATCCA+TGG - Chr2:3576711-3576730 MsG0280006570.01.T01:intron 45.0%
TTTAGAAGTGGGAGTCAGAG+AGG + Chr2:3580539-3580558 None:intergenic 45.0%
TTTGTCTCTTCCACAGGAAG+AGG + Chr2:3576296-3576315 None:intergenic 45.0%
! GTGAAAGCTTGTTTGGGACT+TGG - Chr2:3576586-3576605 MsG0280006570.01.T01:intron 45.0%
! TGATCCAACTCTAGGAAGCT+AGG - Chr2:3579655-3579674 MsG0280006570.01.T01:intron 45.0%
! TTAGGGCATGTTTGATGGTC+AGG + Chr2:3579161-3579180 None:intergenic 45.0%
!! CTTTGGCCTTAATTTGCGCT+TGG + Chr2:3580060-3580079 None:intergenic 45.0%
!! GCCTTAATTTGCGCTTGGAA+TGG + Chr2:3580055-3580074 None:intergenic 45.0%
!! GTGAGTTAAAGTGTTGGAGC+TGG + Chr2:3577511-3577530 None:intergenic 45.0%
!! TGTTGCTTTAGGACAGCCTT+AGG - Chr2:3578003-3578022 MsG0280006570.01.T01:intron 45.0%
!! TTTGTTGTTAGCTGCGCTGA+TGG + Chr2:3577752-3577771 None:intergenic 45.0%
!! AAATTATATTTAATAAAGAT+AGG - Chr2:3579229-3579248 MsG0280006570.01.T01:intron 5.0%
!!! TAAAAATTAAGTAATTTTTA+TGG - Chr2:3577183-3577202 MsG0280006570.01.T01:intron 5.0%
!!! TAAAAATTACTTAATTTTTA+TGG + Chr2:3577183-3577202 None:intergenic 5.0%
AGGTGCAAGAGGCTTACCAT+AGG + Chr2:3576153-3576172 None:intergenic 50.0%
CAGACACAACAGCAGGTATG+TGG + Chr2:3577920-3577939 None:intergenic 50.0%
CCTAGCATTCTAACCGAGGT+GGG + Chr2:3578196-3578215 None:intergenic 50.0%
CTAGCATTCTAACCGAGGTG+GGG + Chr2:3578195-3578214 None:intergenic 50.0%
CTCCTTCTCCACCATGGATA+TGG + Chr2:3576725-3576744 None:intergenic 50.0%
GATCCAACACCTTATGGTGG+TGG - Chr2:3576110-3576129 MsG0280006570.01.T01:CDS 50.0%
GGATCTGGATCCTCTCAATC+CGG - Chr2:3578513-3578532 MsG0280006570.01.T01:intron 50.0%
GGCCCATCTGATGCCATATA+TGG - Chr2:3578228-3578247 MsG0280006570.01.T01:intron 50.0%
GGTCAGCTTAAAGGGTTGGA+GGG - Chr2:3580927-3580946 MsG0280006570.01.T01:CDS 50.0%
GTGGGGTTGCCAACTTAGAT+AGG - Chr2:3577419-3577438 MsG0280006570.01.T01:intron 50.0%
TAGCATTCTAACCGAGGTGG+GGG + Chr2:3578194-3578213 None:intergenic 50.0%
TCATCTCTCCTTCTCCACCA+TGG + Chr2:3576731-3576750 None:intergenic 50.0%
TCCTAGCATTCTAACCGAGG+TGG + Chr2:3578197-3578216 None:intergenic 50.0%
TCTTCCACAGGAAGAGGAAG+AGG + Chr2:3576290-3576309 None:intergenic 50.0%
TGGTCAGCTTAAAGGGTTGG+AGG - Chr2:3580926-3580945 MsG0280006570.01.T01:CDS 50.0%
TTGGGAGTCCATATCCATGG+TGG - Chr2:3576714-3576733 MsG0280006570.01.T01:intron 50.0%
! AATGCTAGGAGCGTGTTGCT+TGG - Chr2:3578207-3578226 MsG0280006570.01.T01:intron 50.0%
! GTCCATATCCATGGTGGAGA+AGG - Chr2:3576720-3576739 MsG0280006570.01.T01:intron 50.0%
! TTTACCGGTGGGGCTATTTC+CGG - Chr2:3580779-3580798 MsG0280006570.01.T01:CDS 50.0%
ATAGCCCCACCGGTAAACCA+TGG + Chr2:3580776-3580795 None:intergenic 55.0%
CCCACCTCGGTTAGAATGCT+AGG - Chr2:3578193-3578212 MsG0280006570.01.T01:intron 55.0%
CGCTCCTAGCATTCTAACCG+AGG + Chr2:3578200-3578219 None:intergenic 55.0%
GTAAACATGCGCGCGGAATG+TGG + Chr2:3579841-3579860 None:intergenic 55.0%
TCTTCGCGGCCATGGTTTAC+CGG - Chr2:3580764-3580783 MsG0280006570.01.T01:CDS 55.0%
TTCGCCCGCCCTTACATTTG+TGG - Chr2:3577381-3577400 MsG0280006570.01.T01:intron 55.0%
! GCTGCGCTGATGGACAAACA+AGG + Chr2:3577742-3577761 None:intergenic 55.0%
CAAGAGGTTCTTCGCGGCCA+TGG - Chr2:3580756-3580775 MsG0280006570.01.T01:CDS 60.0%
CTCTCCGGAAATAGCCCCAC+CGG + Chr2:3580786-3580805 None:intergenic 60.0%
GACACGGCGCAATTGTACCC+GGG + Chr2:3578478-3578497 None:intergenic 60.0%
GGACACGGCGCAATTGTACC+CGG + Chr2:3578479-3578498 None:intergenic 60.0%
GGCGGGCGAACTATGCTGAT+TGG + Chr2:3577371-3577390 None:intergenic 60.0%
CGCGGCCATGGTTTACCGGT+GGG - Chr2:3580768-3580787 MsG0280006570.01.T01:CDS 65.0%
GCGGCCATGGTTTACCGGTG+GGG - Chr2:3580769-3580788 MsG0280006570.01.T01:CDS 65.0%
TCGCGGCCATGGTTTACCGG+TGG - Chr2:3580767-3580786 MsG0280006570.01.T01:CDS 65.0%
TGCGCGCGGAATGTGGCCAT+AGG + Chr2:3579834-3579853 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 3575780 3581121 3575780 ID=MsG0280006570.01;Name=MsG0280006570.01
Chr2 mRNA 3575780 3581121 3575780 ID=MsG0280006570.01.T01;Parent=MsG0280006570.01;Name=MsG0280006570.01.T01;_AED=0.41;_eAED=0.42;_QI=0|0|0|0.75|0.33|0.25|4|0|478
Chr2 exon 3580521 3581121 3580521 ID=MsG0280006570.01.T01:exon:1747;Parent=MsG0280006570.01.T01
Chr2 exon 3580090 3580420 3580090 ID=MsG0280006570.01.T01:exon:1746;Parent=MsG0280006570.01.T01
Chr2 exon 3578013 3578061 3578013 ID=MsG0280006570.01.T01:exon:1745;Parent=MsG0280006570.01.T01
Chr2 exon 3575780 3576235 3575780 ID=MsG0280006570.01.T01:exon:1744;Parent=MsG0280006570.01.T01
Chr2 CDS 3580521 3581121 3580521 ID=MsG0280006570.01.T01:cds;Parent=MsG0280006570.01.T01
Chr2 CDS 3580090 3580420 3580090 ID=MsG0280006570.01.T01:cds;Parent=MsG0280006570.01.T01
Chr2 CDS 3578013 3578061 3578013 ID=MsG0280006570.01.T01:cds;Parent=MsG0280006570.01.T01
Chr2 CDS 3575780 3576235 3575780 ID=MsG0280006570.01.T01:cds;Parent=MsG0280006570.01.T01
Gene Sequence

>MsG0280006570.01.T01

ATGGCCTACTACAACTCTTCCTATTCTGGATCTGATTATGGTGAGAACAATTTCAACTCTTATACTTTCAATTATGATTATGCTCAAGTTCCATCTTTTATGACTTACAATAGCTATGACTATAATCAACCAAATTATGCCTATGATTCAAGTTCATATTTTGCTCCTAGTAATAATTACCCTGATCATAGTTATAACCAAACCATAGCATATTCTGCCACAACTTTTAGTGATCCAAAATATCACGTGTATGATCCTAATTATGGTATGACTCAGCTTGTGCTATCTTATTCTACCTTGGAATTCAATGAACCTGCATTTGATGAATATGATCCAACACCTTATGGTGGTGGATATGACATTGATAAAACCTATGGTAAGCCTCTTGCACCTTCAGATAAAATTTGCTATCCTCGTTCTGGTTCAACTTCAATTCCAATTCCAACTCCAACTTCAATTCCAATTCCAACTCCAACTCCAACTCCAATTCCAATTCCAATTCCAATTCCTCTTCCTCTTCCTGTGGAAGAGACAAAACTTGATGAGAAAGTAATCAAACCTCAAAATGAAACCATAGACCAAAATGCTGTAGAAAGCCACAGGTCTATTGATGGAAGTGGGTTTGGTGAGCGTGAGATTGAGATTGTGAAGGAAGTGACTCCTCCTCAATATCCTAGTGGATATGGATTGGAAACATTGGATATTTGTGAAAGCTTGTTTGGGACTTGGCCTTGTTTGTCAAAAATGAAGAGAGAAAATTGTTGTAATAATGTAGGCATTCATAGAGGAAATAATTGTGAGGAGAATATGTGGAAAGAGACTGCAGATTATTGTTTGGGAGTCCATATCCATGGTGGAGAAGGAGAGATGATGATTATGGTGGAGAACTTGTCTATGGCTATGAAAGGCATTGATTTCAATGATGAATCATGCACTATACAATCATTTGAATTAAGAGGCCAACAACATCACCCTCAACATCTTCTTATGGCACTCAGAATCAGATTTTTTGATGCAATTTTTCTTGTTGTTCTTATTGCATTTCCCGTGATAGATGCATATACTTCTCTTCAAGAGGTTCTTCGCGGCCATGGTTTACCGGTGGGGCTATTTCCGGAGAGTGTAAAATCATACAATTTGGATCAAAGTGGTGTTTTGGAAGTGAAGTTGGATAGTCCTTGTATTGTAAAGTATGAAACAAGAGTGTTCTTTGAAACTGTTGTTCGTGCTAATCTTAGTTTTGGTCAGCTTAAAGGGTTGGAGGGTCTTTCTCAAGAAGAGCTTTTCCTTTGGTTACCGGTTAAAGATATCATTGTGGACGATCCTTCATCAGGTCTCATTCTTATTGATATTGGTCTTGCTTATAAACAGCTCTCTCTTTCTCTCTTTGAAGATCCCCAATTTGTAGATCCCAAGGTAATCAATCGCCCTTTATGA

Protein sequence

>MsG0280006570.01.T01

MAYYNSSYSGSDYGENNFNSYTFNYDYAQVPSFMTYNSYDYNQPNYAYDSSSYFAPSNNYPDHSYNQTIAYSATTFSDPKYHVYDPNYGMTQLVLSYSTLEFNEPAFDEYDPTPYGGGYDIDKTYGKPLAPSDKICYPRSGSTSIPIPTPTSIPIPTPTPTPIPIPIPIPLPLPVEETKLDEKVIKPQNETIDQNAVESHRSIDGSGFGEREIEIVKEVTPPQYPSGYGLETLDICESLFGTWPCLSKMKRENCCNNVGIHRGNNCEENMWKETADYCLGVHIHGGEGEMMIMVENLSMAMKGIDFNDESCTIQSFELRGQQHHPQHLLMALRIRFFDAIFLVVLIAFPVIDAYTSLQEVLRGHGLPVGLFPESVKSYNLDQSGVLEVKLDSPCIVKYETRVFFETVVRANLSFGQLKGLEGLSQEELFLWLPVKDIIVDDPSSGLILIDIGLAYKQLSLSLFEDPQFVDPKVINRPL*