AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015440.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015440.01.T01 MTR_3g070120 89.691 388 29 3 1 388 1 377 0.0 574
MsG0380015440.01.T01 MTR_2g010790 36.103 349 168 16 55 373 82 405 3.75e-37 139
MsG0380015440.01.T01 MTR_1g081580 36.697 109 65 2 145 250 83 190 3.15e-14 73.9
MsG0380015440.01.T01 MTR_7g114600 33.036 112 67 2 160 263 111 222 3.55e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015440.01.T01 AT4G25210 33.438 317 163 13 93 384 75 368 1.19e-25 107
MsG0380015440.01.T01 AT4G00390 35.556 225 112 9 58 268 56 261 2.01e-25 106
MsG0380015440.01.T01 AT1G11510 36.150 213 114 6 56 260 40 238 3.53e-25 105
MsG0380015440.01.T01 AT1G61730 35.784 204 99 7 72 258 66 254 2.13e-24 103
MsG0380015440.01.T01 AT1G11510 43.182 132 64 3 132 260 86 209 1.11e-21 95.1
MsG0380015440.01.T01 AT4G01260 35.135 185 99 6 83 255 33 208 3.62e-20 90.9
MsG0380015440.01.T01 AT4G00250 31.739 230 126 6 50 274 26 229 6.59e-20 90.1
MsG0380015440.01.T01 AT2G25650 30.573 157 101 2 162 315 67 218 9.78e-16 78.6
MsG0380015440.01.T01 AT4G00238 31.176 170 110 3 59 222 34 202 1.63e-15 77.4
MsG0380015440.01.T01 AT5G14280 41.748 103 55 2 153 250 52 154 1.24e-14 74.3
MsG0380015440.01.T01 AT1G66420 30.882 136 90 1 116 251 43 174 4.33e-14 72.4
MsG0380015440.01.T01 AT1G44810 32.544 169 85 6 84 251 70 210 4.86e-14 72.4
MsG0380015440.01.T01 AT4G00270 33.929 112 71 1 162 270 66 177 5.62e-13 69.3
MsG0380015440.01.T01 AT2G01370 35.714 98 62 1 154 250 74 171 8.41e-13 68.2
MsG0380015440.01.T01 AT5G28040 30.387 181 101 8 105 271 79 248 8.00e-12 67.0
MsG0380015440.01.T01 AT5G28040 30.387 181 101 8 105 271 79 248 8.00e-12 67.0
MsG0380015440.01.T01 AT3G04930 35.577 104 57 5 160 255 138 239 2.22e-11 65.5
MsG0380015440.01.T01 AT3G04930 35.714 98 54 4 160 250 138 233 2.59e-11 65.5

Find 91 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTCTGCTGAATTGTTCT+TGG 0.198495 3:+70238910 None:intergenic
ATTCAATGCATCCCTTATTT+TGG 0.209798 3:+70237989 None:intergenic
AGGAAACAGCTACCAAAATA+AGG 0.258688 3:-70238001 MsG0380015440.01.T01:CDS
GAAGAGAATGGGAAAGTTAA+TGG 0.265828 3:-70238335 MsG0380015440.01.T01:CDS
TCTTCTGCTGAATTGTTCTT+GGG 0.288899 3:+70238911 None:intergenic
GGAGGATACTGGTTTGAGTT+TGG 0.293728 3:-70238180 MsG0380015440.01.T01:CDS
TTGAGCTTTCGAAGAAGATT+TGG 0.299730 3:-70238388 MsG0380015440.01.T01:CDS
GTTGATTTCACTGCCAAATC+AGG 0.313777 3:-70238587 MsG0380015440.01.T01:CDS
TGAGCTTTCGAAGAAGATTT+GGG 0.331143 3:-70238387 MsG0380015440.01.T01:CDS
TAGGGTTTGTTCAATGGGTT+TGG 0.338716 3:+70238829 None:intergenic
TGCTGAATTGTTCTTGGGGT+TGG 0.342217 3:+70238916 None:intergenic
AGCGAGGACAACTAAGAAAT+TGG 0.352971 3:-70238270 MsG0380015440.01.T01:CDS
GGAATCAAAGAAAGGTGAAT+TGG 0.353216 3:-70238090 MsG0380015440.01.T01:CDS
AGTAGGATCATTCCCTGATT+TGG 0.362230 3:+70238574 None:intergenic
AGCAGCCGGTTCCTTCTTCC+CGG 0.367777 3:+70238307 None:intergenic
GGCAGGTGGTATGGAGGGTT+TGG 0.368058 3:+70238796 None:intergenic
AAAACCACCAATGGTGAATC+AGG 0.369727 3:+70238239 None:intergenic
TCCATACCACCTGCCAGATC+TGG 0.378422 3:-70238788 MsG0380015440.01.T01:CDS
AGGACGTTTGGTTCCAGATC+TGG 0.379033 3:+70238775 None:intergenic
ATCAATTGCGCGATAAGGTT+CGG 0.379484 3:-70238490 MsG0380015440.01.T01:CDS
GAATTCATCATCAAGCCATT+AGG 0.384003 3:-70237970 None:intergenic
TCCAGATCTGGCAGGTGGTA+TGG 0.387320 3:+70238787 None:intergenic
GTCTTTGACGGCGGCGGTGG+CGG 0.397838 3:+70239099 None:intergenic
GCTTGATCAATTGCGCGATA+AGG 0.398297 3:-70238495 MsG0380015440.01.T01:CDS
TAAGTACAGAATTGCTGAAA+TGG 0.402227 3:-70238054 MsG0380015440.01.T01:CDS
CTCTTCACCACATCTATAAC+CGG 0.406554 3:+70238131 None:intergenic
CGGTGGTGGGTCGTCTTTGA+CGG 0.412587 3:+70239087 None:intergenic
CTTCTTCTTGTTCTTCTCCT+CGG 0.418262 3:+70238709 None:intergenic
GCGGCTGCTTTCTTAGCAGC+CGG 0.430843 3:+70238293 None:intergenic
GATGAGGTTGCAATTCTTCA+AGG 0.431860 3:-70238614 MsG0380015440.01.T01:CDS
GTCGTCTTTGACGGCGGCGG+TGG 0.432622 3:+70239096 None:intergenic
TTGTTATTGTCATCCTCCTC+CGG 0.454682 3:+70238677 None:intergenic
AAGAGAATGGGAAAGTTAAT+GGG 0.461323 3:-70238334 MsG0380015440.01.T01:CDS
ATTGAACAAACCCTAAAATC+AGG 0.464800 3:-70238821 MsG0380015440.01.T01:CDS
GGAAACAGCTACCAAAATAA+GGG 0.466999 3:-70238000 MsG0380015440.01.T01:CDS
AGGAAGGTGGACCGTGGTAA+TGG 0.469415 3:-70238206 MsG0380015440.01.T01:CDS
GGTAATGGAAAGGAGGATAC+TGG 0.473524 3:-70238191 MsG0380015440.01.T01:CDS
GAAGGCCGGGAAGAAGGAAC+CGG 0.476484 3:-70238312 MsG0380015440.01.T01:CDS
CTCCTCTACCGGCTTCGAAA+AGG 0.495702 3:+70238418 None:intergenic
GCGATAAGGTTCGGAGGTTG+AGG 0.498254 3:-70238481 MsG0380015440.01.T01:CDS
AAAGCCGATAGATGCTTAGT+AGG 0.500619 3:+70238557 None:intergenic
TCAAACATTGTCTCCTCTAC+CGG 0.506681 3:+70238407 None:intergenic
TGGTGGGTCGTCTTTGACGG+CGG 0.508266 3:+70239090 None:intergenic
CGAGGAGAAGAACAAGAAGA+AGG 0.508520 3:-70238708 MsG0380015440.01.T01:CDS
TTTGAGAATAAATGTAAGAG+TGG 0.508621 3:-70238452 MsG0380015440.01.T01:CDS
CAAGAAGAAGGAGAAAGAGC+CGG 0.511218 3:-70238696 MsG0380015440.01.T01:CDS
TCGAAGAAGATTTGGGGTGG+TGG 0.514670 3:-70238380 MsG0380015440.01.T01:CDS
GGGAAAGTTAATGGGAAGGC+CGG 0.514683 3:-70238326 MsG0380015440.01.T01:CDS
TTAATGAAGGTGAAGAGAAT+GGG 0.515992 3:-70238346 MsG0380015440.01.T01:CDS
TAATGGGAAGGCCGGGAAGA+AGG 0.516314 3:-70238318 MsG0380015440.01.T01:CDS
CTTCTGCTGAATTGTTCTTG+GGG 0.519445 3:+70238912 None:intergenic
GGTTATAGATGTGGTGAAGA+GGG 0.520148 3:-70238129 MsG0380015440.01.T01:CDS
AGATGTGGTGAAGAGGGGAG+TGG 0.520696 3:-70238123 MsG0380015440.01.T01:CDS
GTTAATGAAGGTGAAGAGAA+TGG 0.522303 3:-70238347 MsG0380015440.01.T01:CDS
GGAGCCTGATTCACCATTGG+TGG 0.527617 3:-70238243 MsG0380015440.01.T01:CDS
AGATCTGGCAGGTGGTATGG+AGG 0.532827 3:+70238790 None:intergenic
GAAGGAGAAAGAGCCGGAGG+AGG 0.534312 3:-70238690 MsG0380015440.01.T01:CDS
TTGATTTCACTGCCAAATCA+GGG 0.541120 3:-70238586 MsG0380015440.01.T01:CDS
GTTTATGCAGAAAACTGAGT+TGG 0.544369 3:-70238027 MsG0380015440.01.T01:CDS
TGGGTCGTCTTTGACGGCGG+CGG 0.548251 3:+70239093 None:intergenic
CGGTTATAGATGTGGTGAAG+AGG 0.554197 3:-70238130 MsG0380015440.01.T01:CDS
TTGAGAATAAATGTAAGAGT+GGG 0.554852 3:-70238451 MsG0380015440.01.T01:CDS
TGATCCTACTAAGCATCTAT+CGG 0.559423 3:-70238561 MsG0380015440.01.T01:CDS
GCAGAAAACTGAGTTGGCTA+AGG 0.559486 3:-70238021 MsG0380015440.01.T01:CDS
ATGAGGTTGCAATTCTTCAA+GGG 0.562519 3:-70238613 MsG0380015440.01.T01:CDS
GACAACTAAGAAATTGGTGA+TGG 0.569729 3:-70238264 MsG0380015440.01.T01:CDS
GATCTGGCAGGTGGTATGGA+GGG 0.572933 3:+70238791 None:intergenic
GAAGAAACTTCATCAGAAGC+AGG 0.578349 3:-70239028 MsG0380015440.01.T01:CDS
GATGGAGCCTGATTCACCAT+TGG 0.580880 3:-70238246 MsG0380015440.01.T01:CDS
GAAGAAGGAGAAAGAGCCGG+AGG 0.582776 3:-70238693 MsG0380015440.01.T01:CDS
GGAAAGTTAATGGGAAGGCC+GGG 0.583565 3:-70238325 MsG0380015440.01.T01:CDS
CGTTTGGTTCCAGATCTGGC+AGG 0.590921 3:+70238779 None:intergenic
GAAGCAGGTTCTTCATCTGA+AGG 0.592880 3:-70239013 MsG0380015440.01.T01:CDS
CTTTCGAAGAAGATTTGGGG+TGG 0.593102 3:-70238383 MsG0380015440.01.T01:CDS
GGTAAAGTTGATGTTAATGA+AGG 0.597345 3:-70238359 MsG0380015440.01.T01:CDS
TCGATCGAGGAATCAAAGAA+AGG 0.600967 3:-70238098 MsG0380015440.01.T01:CDS
GTTATAGATGTGGTGAAGAG+GGG 0.624491 3:-70238128 MsG0380015440.01.T01:CDS
CTAAGAAAGCAGCCGCAGCG+AGG 0.632166 3:-70238286 MsG0380015440.01.T01:CDS
TTGGTTCCAGATCTGGCAGG+TGG 0.633072 3:+70238782 None:intergenic
GGTGGACCGTGGTAATGGAA+AGG 0.637313 3:-70238201 MsG0380015440.01.T01:CDS
TATCCTCCTTTCCATTACCA+CGG 0.639577 3:+70238195 None:intergenic
GAGCTTTCGAAGAAGATTTG+GGG 0.640229 3:-70238386 MsG0380015440.01.T01:CDS
GAATGGGAAAGTTAATGGGA+AGG 0.645155 3:-70238330 MsG0380015440.01.T01:CDS
GAGGGGAGTGGAGTCGATCG+AGG 0.647001 3:-70238111 MsG0380015440.01.T01:CDS
TTTGAAGGAAAATAGGAAGG+TGG 0.647969 3:-70238219 MsG0380015440.01.T01:CDS
GGACCGTGGTAATGGAAAGG+AGG 0.655825 3:-70238198 MsG0380015440.01.T01:CDS
TTTCTTAGTTGTCCTCGCTG+CGG 0.659586 3:+70238274 None:intergenic
AATTGCGCGATAAGGTTCGG+AGG 0.671494 3:-70238487 MsG0380015440.01.T01:CDS
GCAGGTTCTTCATCTGAAGG+AGG 0.673317 3:-70239010 MsG0380015440.01.T01:CDS
TCTACCGGCTTCGAAAAGGT+AGG 0.695810 3:+70238422 None:intergenic
GAAAATAGGAAGGTGGACCG+TGG 0.713258 3:-70238212 MsG0380015440.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TTGAGAATAAATGTAAGAGT+GGG - Chr3:70238635-70238654 MsG0380015440.01.T01:CDS 25.0%
! TTTGAGAATAAATGTAAGAG+TGG - Chr3:70238634-70238653 MsG0380015440.01.T01:CDS 25.0%
AAGAGAATGGGAAAGTTAAT+GGG - Chr3:70238752-70238771 MsG0380015440.01.T01:CDS 30.0%
ATTGAACAAACCCTAAAATC+AGG - Chr3:70238265-70238284 MsG0380015440.01.T01:CDS 30.0%
GAATAAAAAGAAAACAACCG+AGG - Chr3:70238360-70238379 MsG0380015440.01.T01:CDS 30.0%
TAAGTACAGAATTGCTGAAA+TGG - Chr3:70239032-70239051 MsG0380015440.01.T01:CDS 30.0%
TTAATGAAGGTGAAGAGAAT+GGG - Chr3:70238740-70238759 MsG0380015440.01.T01:CDS 30.0%
! TGAAATGATTCATTTTGAGC+CGG - Chr3:70238936-70238955 MsG0380015440.01.T01:CDS 30.0%
!! ATTCAATGCATCCCTTATTT+TGG + Chr3:70239100-70239119 None:intergenic 30.0%
!! GGTAAAGTTGATGTTAATGA+AGG - Chr3:70238727-70238746 MsG0380015440.01.T01:CDS 30.0%
!!! GAACTGACTTTTTCACAATT+TGG + Chr3:70238558-70238577 None:intergenic 30.0%
!!! GATTTTAGGGTTTGTTCAAT+GGG + Chr3:70238265-70238284 None:intergenic 30.0%
!!! TGATTTTAGGGTTTGTTCAA+TGG + Chr3:70238266-70238285 None:intergenic 30.0%
AGGAAACAGCTACCAAAATA+AGG - Chr3:70239085-70239104 MsG0380015440.01.T01:CDS 35.0%
ATCTTCTGCTGAATTGTTCT+TGG + Chr3:70238179-70238198 None:intergenic 35.0%
ATGAGGTTGCAATTCTTCAA+GGG - Chr3:70238473-70238492 MsG0380015440.01.T01:CDS 35.0%
GAAGAGAATGGGAAAGTTAA+TGG - Chr3:70238751-70238770 MsG0380015440.01.T01:CDS 35.0%
GACAACTAAGAAATTGGTGA+TGG - Chr3:70238822-70238841 MsG0380015440.01.T01:CDS 35.0%
GGAAACAGCTACCAAAATAA+GGG - Chr3:70239086-70239105 MsG0380015440.01.T01:CDS 35.0%
GGAATCAAAGAAAGGTGAAT+TGG - Chr3:70238996-70239015 MsG0380015440.01.T01:CDS 35.0%
GTTAATGAAGGTGAAGAGAA+TGG - Chr3:70238739-70238758 MsG0380015440.01.T01:CDS 35.0%
GTTTATGCAGAAAACTGAGT+TGG - Chr3:70239059-70239078 MsG0380015440.01.T01:CDS 35.0%
TCTTCTGCTGAATTGTTCTT+GGG + Chr3:70238178-70238197 None:intergenic 35.0%
TGAGCTTTCGAAGAAGATTT+GGG - Chr3:70238699-70238718 MsG0380015440.01.T01:CDS 35.0%
TGATCCTACTAAGCATCTAT+CGG - Chr3:70238525-70238544 MsG0380015440.01.T01:CDS 35.0%
TTGAGCTTTCGAAGAAGATT+TGG - Chr3:70238698-70238717 MsG0380015440.01.T01:CDS 35.0%
TTGATTTCACTGCCAAATCA+GGG - Chr3:70238500-70238519 MsG0380015440.01.T01:CDS 35.0%
TTTGAAGGAAAATAGGAAGG+TGG - Chr3:70238867-70238886 MsG0380015440.01.T01:CDS 35.0%
! TGTTCGATTTTGTCTTCTTG+CGG + Chr3:70238022-70238041 None:intergenic 35.0%
! TTTTCCTTCAAAACCACCAA+TGG + Chr3:70238859-70238878 None:intergenic 35.0%
!!! GGTTTTGAAGGAAAATAGGA+AGG - Chr3:70238864-70238883 MsG0380015440.01.T01:CDS 35.0%
!!! TGGTGGTTTTGAAGGAAAAT+AGG - Chr3:70238860-70238879 MsG0380015440.01.T01:CDS 35.0%
!!! TGTTCAATGGGTTTGGTTTT+TGG + Chr3:70238253-70238272 None:intergenic 35.0%
!!! TTGTTTTTGGAGGTGGATTT+TGG + Chr3:70238135-70238154 None:intergenic 35.0%
AAAACCACCAATGGTGAATC+AGG + Chr3:70238850-70238869 None:intergenic 40.0%
AAAGCCGATAGATGCTTAGT+AGG + Chr3:70238532-70238551 None:intergenic 40.0%
AGCGAGGACAACTAAGAAAT+TGG - Chr3:70238816-70238835 MsG0380015440.01.T01:CDS 40.0%
AGTAGGATCATTCCCTGATT+TGG + Chr3:70238515-70238534 None:intergenic 40.0%
ATCAATTGCGCGATAAGGTT+CGG - Chr3:70238596-70238615 MsG0380015440.01.T01:CDS 40.0%
CTCTTCACCACATCTATAAC+CGG + Chr3:70238958-70238977 None:intergenic 40.0%
CTTCTGCTGAATTGTTCTTG+GGG + Chr3:70238177-70238196 None:intergenic 40.0%
CTTCTTCTTGTTCTTCTCCT+CGG + Chr3:70238380-70238399 None:intergenic 40.0%
GAAGAAACTTCATCAGAAGC+AGG - Chr3:70238058-70238077 MsG0380015440.01.T01:CDS 40.0%
GAATGGGAAAGTTAATGGGA+AGG - Chr3:70238756-70238775 MsG0380015440.01.T01:CDS 40.0%
GAGCTTTCGAAGAAGATTTG+GGG - Chr3:70238700-70238719 MsG0380015440.01.T01:CDS 40.0%
GATGAGGTTGCAATTCTTCA+AGG - Chr3:70238472-70238491 MsG0380015440.01.T01:CDS 40.0%
GGTTATAGATGTGGTGAAGA+GGG - Chr3:70238957-70238976 MsG0380015440.01.T01:CDS 40.0%
GTTATAGATGTGGTGAAGAG+GGG - Chr3:70238958-70238977 MsG0380015440.01.T01:CDS 40.0%
TATCCTCCTTTCCATTACCA+CGG + Chr3:70238894-70238913 None:intergenic 40.0%
TCAAACATTGTCTCCTCTAC+CGG + Chr3:70238682-70238701 None:intergenic 40.0%
TCGATCGAGGAATCAAAGAA+AGG - Chr3:70238988-70239007 MsG0380015440.01.T01:CDS 40.0%
! GTCGTTTCAGAGAGTTTTCA+CGG - Chr3:70238444-70238463 MsG0380015440.01.T01:CDS 40.0%
! GTTGATTTCACTGCCAAATC+AGG - Chr3:70238499-70238518 MsG0380015440.01.T01:CDS 40.0%
! TAGGGTTTGTTCAATGGGTT+TGG + Chr3:70238260-70238279 None:intergenic 40.0%
! TTGTTATTGTCATCCTCCTC+CGG + Chr3:70238412-70238431 None:intergenic 40.0%
! TTTTGAGCCGGTTATAGATG+TGG - Chr3:70238948-70238967 MsG0380015440.01.T01:CDS 40.0%
!! AGGGTTTGGTTCCTGATTTT+AGG + Chr3:70238279-70238298 None:intergenic 40.0%
!! AGGTGGATTTTGGTCTTCTT+CGG + Chr3:70238125-70238144 None:intergenic 40.0%
!! GGGTTTGGTTCCTGATTTTA+GGG + Chr3:70238278-70238297 None:intergenic 40.0%
!!! TCAATGGGTTTGGTTTTTGG+AGG + Chr3:70238250-70238269 None:intergenic 40.0%
!!! TTCACCATTGGTGGTTTTGA+AGG - Chr3:70238852-70238871 MsG0380015440.01.T01:CDS 40.0%
!!! TTGTTCTTGGGGTTGGTTTT+CGG + Chr3:70238166-70238185 None:intergenic 40.0%
CAAGAAGAAGGAGAAAGAGC+CGG - Chr3:70238390-70238409 MsG0380015440.01.T01:CDS 45.0%
CGAGGAGAAGAACAAGAAGA+AGG - Chr3:70238378-70238397 MsG0380015440.01.T01:CDS 45.0%
CGGTTATAGATGTGGTGAAG+AGG - Chr3:70238956-70238975 MsG0380015440.01.T01:CDS 45.0%
CTTTCGAAGAAGATTTGGGG+TGG - Chr3:70238703-70238722 MsG0380015440.01.T01:CDS 45.0%
GAAGCAGGTTCTTCATCTGA+AGG - Chr3:70238073-70238092 MsG0380015440.01.T01:CDS 45.0%
GCTTGATCAATTGCGCGATA+AGG - Chr3:70238591-70238610 MsG0380015440.01.T01:CDS 45.0%
TGCTGAATTGTTCTTGGGGT+TGG + Chr3:70238173-70238192 None:intergenic 45.0%
TTTCTTAGTTGTCCTCGCTG+CGG + Chr3:70238815-70238834 None:intergenic 45.0%
! AGTTTTCACGGAGGATGATG+AGG - Chr3:70238456-70238475 MsG0380015440.01.T01:CDS 45.0%
! ATTTTGTCTTCTTGCGGTGG+TGG + Chr3:70238016-70238035 None:intergenic 45.0%
! GCAGAAAACTGAGTTGGCTA+AGG - Chr3:70239065-70239084 MsG0380015440.01.T01:CDS 45.0%
! GTTTCAGAGAGTTTTCACGG+AGG - Chr3:70238447-70238466 MsG0380015440.01.T01:CDS 45.0%
! TCGATTTTGTCTTCTTGCGG+TGG + Chr3:70238019-70238038 None:intergenic 45.0%
! TTTTGTCTTCTTGCGGTGGT+GGG + Chr3:70238015-70238034 None:intergenic 45.0%
!! GGAGGATACTGGTTTGAGTT+TGG - Chr3:70238906-70238925 MsG0380015440.01.T01:CDS 45.0%
!! GGTAATGGAAAGGAGGATAC+TGG - Chr3:70238895-70238914 MsG0380015440.01.T01:CDS 45.0%
!! GTTGTTTTCAGCAGGACGTT+TGG + Chr3:70238326-70238345 None:intergenic 45.0%
!! TTCGGAGGTGGAGTTGTTTT+TGG + Chr3:70238148-70238167 None:intergenic 45.0%
!!! ATGGGTTTGGTTTTTGGAGG+AGG + Chr3:70238247-70238266 None:intergenic 45.0%
AATTGCGCGATAAGGTTCGG+AGG - Chr3:70238599-70238618 MsG0380015440.01.T01:CDS 50.0%
GAAAATAGGAAGGTGGACCG+TGG - Chr3:70238874-70238893 MsG0380015440.01.T01:CDS 50.0%
GATGGAGCCTGATTCACCAT+TGG - Chr3:70238840-70238859 MsG0380015440.01.T01:CDS 50.0%
GCAGGTTCTTCATCTGAAGG+AGG - Chr3:70238076-70238095 MsG0380015440.01.T01:CDS 50.0%
GGAAAGTTAATGGGAAGGCC+GGG - Chr3:70238761-70238780 MsG0380015440.01.T01:CDS 50.0%
GGGAAAGTTAATGGGAAGGC+CGG - Chr3:70238760-70238779 MsG0380015440.01.T01:CDS 50.0%
! AGGACGTTTGGTTCCAGATC+TGG + Chr3:70238314-70238333 None:intergenic 50.0%
! GACTCCTACCTTTTCGAAGC+CGG - Chr3:70238660-70238679 MsG0380015440.01.T01:CDS 50.0%
! TACCTTTTCGAAGCCGGTAG+AGG - Chr3:70238666-70238685 MsG0380015440.01.T01:CDS 50.0%
! TCGAAGAAGATTTGGGGTGG+TGG - Chr3:70238706-70238725 MsG0380015440.01.T01:CDS 50.0%
!! TCTACCGGCTTCGAAAAGGT+AGG + Chr3:70238667-70238686 None:intergenic 50.0%
!! TTCGCGTCGTTGTTTTCAGC+AGG + Chr3:70238334-70238353 None:intergenic 50.0%
!!! GGAGGTGGAGTTGTTTTTGG+AGG + Chr3:70238145-70238164 None:intergenic 50.0%
!!! GGTGGAGTTGTTTTTGGAGG+TGG + Chr3:70238142-70238161 None:intergenic 50.0%
!!! TTCTTGGGGTTGGTTTTCGG+AGG + Chr3:70238163-70238182 None:intergenic 50.0%
AGATCTGGCAGGTGGTATGG+AGG + Chr3:70238299-70238318 None:intergenic 55.0%
AGATGTGGTGAAGAGGGGAG+TGG - Chr3:70238963-70238982 MsG0380015440.01.T01:CDS 55.0%
AGGAAGGTGGACCGTGGTAA+TGG - Chr3:70238880-70238899 MsG0380015440.01.T01:CDS 55.0%
GAAGAAGGAGAAAGAGCCGG+AGG - Chr3:70238393-70238412 MsG0380015440.01.T01:CDS 55.0%
GATCTGGCAGGTGGTATGGA+GGG + Chr3:70238298-70238317 None:intergenic 55.0%
GCGATAAGGTTCGGAGGTTG+AGG - Chr3:70238605-70238624 MsG0380015440.01.T01:CDS 55.0%
GGAGCCTGATTCACCATTGG+TGG - Chr3:70238843-70238862 MsG0380015440.01.T01:CDS 55.0%
TAATGGGAAGGCCGGGAAGA+AGG - Chr3:70238768-70238787 MsG0380015440.01.T01:CDS 55.0%
TCCAGATCTGGCAGGTGGTA+TGG + Chr3:70238302-70238321 None:intergenic 55.0%
TCCATACCACCTGCCAGATC+TGG - Chr3:70238298-70238317 MsG0380015440.01.T01:CDS 55.0%
TTGGTTCCAGATCTGGCAGG+TGG + Chr3:70238307-70238326 None:intergenic 55.0%
! CGTTTGGTTCCAGATCTGGC+AGG + Chr3:70238310-70238329 None:intergenic 55.0%
!! CTCCTCTACCGGCTTCGAAA+AGG + Chr3:70238671-70238690 None:intergenic 55.0%
!! GGACCGTGGTAATGGAAAGG+AGG - Chr3:70238888-70238907 MsG0380015440.01.T01:CDS 55.0%
!! GGTGGACCGTGGTAATGGAA+AGG - Chr3:70238885-70238904 MsG0380015440.01.T01:CDS 55.0%
!!! TTGGGGTTGGTTTTCGGAGG+TGG + Chr3:70238160-70238179 None:intergenic 55.0%
CTAAGAAAGCAGCCGCAGCG+AGG - Chr3:70238800-70238819 MsG0380015440.01.T01:CDS 60.0%
GAAGGAGAAAGAGCCGGAGG+AGG - Chr3:70238396-70238415 MsG0380015440.01.T01:CDS 60.0%
GAAGGCCGGGAAGAAGGAAC+CGG - Chr3:70238774-70238793 MsG0380015440.01.T01:CDS 60.0%
GGCAGGTGGTATGGAGGGTT+TGG + Chr3:70238293-70238312 None:intergenic 60.0%
! AGCAGCCGGTTCCTTCTTCC+CGG + Chr3:70238782-70238801 None:intergenic 60.0%
! GCGGCTGCTTTCTTAGCAGC+CGG + Chr3:70238796-70238815 None:intergenic 60.0%
! TGGTGGGTCGTCTTTGACGG+CGG + Chr3:70237999-70238018 None:intergenic 60.0%
!! CGGTGGTGGGTCGTCTTTGA+CGG + Chr3:70238002-70238021 None:intergenic 60.0%
GAGGGGAGTGGAGTCGATCG+AGG - Chr3:70238975-70238994 MsG0380015440.01.T01:CDS 65.0%
TGGGTCGTCTTTGACGGCGG+CGG + Chr3:70237996-70238015 None:intergenic 65.0%
GTCGTCTTTGACGGCGGCGG+TGG + Chr3:70237993-70238012 None:intergenic 70.0%
GTCTTTGACGGCGGCGGTGG+CGG + Chr3:70237990-70238009 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 70237971 70239137 70237971 ID=MsG0380015440.01;Name=MsG0380015440.01
Chr3 mRNA 70237971 70239137 70237971 ID=MsG0380015440.01.T01;Parent=MsG0380015440.01;Name=MsG0380015440.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|388
Chr3 exon 70237971 70239137 70237971 ID=MsG0380015440.01.T01:exon:376;Parent=MsG0380015440.01.T01
Chr3 CDS 70237971 70239137 70237971 ID=MsG0380015440.01.T01:cds;Parent=MsG0380015440.01.T01
Gene Sequence

>MsG0380015440.01.T01

ATGGCAAAGAAAAACTCCGCCACCGCCGCCGTCAAAGACGACCCACCACCGCAAGAAGACAAAATCGAACAACAAGATGAAAACGACGAAGAAACTTCATCAGAAGCAGGTTCTTCATCTGAAGGAGGCGAAGAAGAAGAAGAAGAATCATCCGAAGAAGACCAAAATCCACCTCCAAAAACAACTCCACCTCCGAAAACCAACCCCAAGAACAATTCAGCAGAAGATGATGAAGATGAAGACGAAGAAGAAACTGATACTGATGAAGACGAACCTCCTCCAAAAACCAAACCCATTGAACAAACCCTAAAATCAGGAACCAAACCCTCCATACCACCTGCCAGATCTGGAACCAAACGTCCTGCTGAAAACAACGACGCGAAACAATCGAATAAAAAGAAAACAACCGAGGAGAAGAACAAGAAGAAGGAGAAAGAGCCGGAGGAGGATGACAATAACAATAACAAGAAAGCGTCGTTTCAGAGAGTTTTCACGGAGGATGATGAGGTTGCAATTCTTCAAGGGCTTGTTGATTTCACTGCCAAATCAGGGAATGATCCTACTAAGCATCTATCGGCTTTTTACCAAATTGTGAAAAAGTCAGTTCATTTTAAAGTTACGCTTGATCAATTGCGCGATAAGGTTCGGAGGTTGAGGCTGAAGTTTGAGAATAAATGTAAGAGTGGGAAGACTCCTACCTTTTCGAAGCCGGTAGAGGAGACAATGTTTGAGCTTTCGAAGAAGATTTGGGGTGGTGGTAAAGTTGATGTTAATGAAGGTGAAGAGAATGGGAAAGTTAATGGGAAGGCCGGGAAGAAGGAACCGGCTGCTAAGAAAGCAGCCGCAGCGAGGACAACTAAGAAATTGGTGATGGAGCCTGATTCACCATTGGTGGTTTTGAAGGAAAATAGGAAGGTGGACCGTGGTAATGGAAAGGAGGATACTGGTTTGAGTTTGGATTCGAATGAAATGATTCATTTTGAGCCGGTTATAGATGTGGTGAAGAGGGGAGTGGAGTCGATCGAGGAATCAAAGAAAGGTGAATTGGAGAGATTGATGAATAAGTACAGAATTGCTGAAATGGAGCTGTTTATGCAGAAAACTGAGTTGGCTAAGGAAACAGCTACCAAAATAAGGGATGCATTGAATTCATCATCAAGCCATTAG

Protein sequence

>MsG0380015440.01.T01

MAKKNSATAAVKDDPPPQEDKIEQQDENDEETSSEAGSSSEGGEEEEEESSEEDQNPPPKTTPPPKTNPKNNSAEDDEDEDEEETDTDEDEPPPKTKPIEQTLKSGTKPSIPPARSGTKRPAENNDAKQSNKKKTTEEKNKKKEKEPEEDDNNNNKKASFQRVFTEDDEVAILQGLVDFTAKSGNDPTKHLSAFYQIVKKSVHFKVTLDQLRDKVRRLRLKFENKCKSGKTPTFSKPVEETMFELSKKIWGGGKVDVNEGEENGKVNGKAGKKEPAAKKAAAARTTKKLVMEPDSPLVVLKENRKVDRGNGKEDTGLSLDSNEMIHFEPVIDVVKRGVESIEESKKGELERLMNKYRIAEMELFMQKTELAKETATKIRDALNSSSSH*