Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010346.01.T01 | XP_003596579.1 | 99.237 | 131 | 1 | 0 | 1 | 131 | 1 | 131 | 4.18E-86 | 257 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010346.01.T01 | Q9LD28 | 93.846 | 130 | 8 | 0 | 1 | 130 | 1 | 130 | 1.94E-82 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010346.01.T01 | G7IHA6 | 99.237 | 131 | 1 | 0 | 1 | 131 | 1 | 131 | 1.99e-86 | 257 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0280010346.01 | MsG0480020969.01 | 0.809257 | 2.069625e-50 | 1.209275e-47 |
| MsG0280010346.01 | MsG0480021015.01 | 0.807785 | 4.264926e-50 | 2.397044e-47 |
| MsG0280010346.01 | MsG0480021302.01 | 0.850573 | 1.556078e-60 | 3.061474e-57 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0780041593.01 | MsG0280010346.01 | PPI |
| MsG0780041592.01 | MsG0280010346.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010346.01.T01 | MTR_2g082220 | 99.237 | 131 | 1 | 0 | 1 | 131 | 1 | 131 | 5.06e-90 | 257 |
| MsG0280010346.01.T01 | MTR_2g082510 | 93.182 | 132 | 8 | 1 | 1 | 131 | 1 | 132 | 2.90e-83 | 240 |
| MsG0280010346.01.T01 | MTR_7g108320 | 85.484 | 124 | 14 | 1 | 3 | 126 | 13 | 132 | 3.58e-69 | 204 |
| MsG0280010346.01.T01 | MTR_7g114060 | 84.921 | 126 | 11 | 2 | 3 | 126 | 10 | 129 | 3.66e-69 | 204 |
| MsG0280010346.01.T01 | MTR_7g114040 | 84.921 | 126 | 11 | 2 | 3 | 126 | 10 | 129 | 3.66e-69 | 204 |
| MsG0280010346.01.T01 | MTR_7g093910 | 81.513 | 119 | 18 | 1 | 3 | 121 | 13 | 127 | 1.44e-66 | 198 |
| MsG0280010346.01.T01 | MTR_2g096610 | 78.704 | 108 | 23 | 0 | 14 | 121 | 20 | 127 | 3.01e-58 | 177 |
| MsG0280010346.01.T01 | MTR_7g113160 | 79.630 | 108 | 22 | 0 | 14 | 121 | 24 | 131 | 7.83e-58 | 176 |
| MsG0280010346.01.T01 | MTR_2g096570 | 74.138 | 116 | 30 | 0 | 16 | 131 | 23 | 138 | 4.15e-57 | 174 |
| MsG0280010346.01.T01 | MTR_4g063280 | 77.982 | 109 | 24 | 0 | 14 | 122 | 16 | 124 | 5.04e-57 | 174 |
| MsG0280010346.01.T01 | MTR_4g064005 | 78.302 | 106 | 23 | 0 | 16 | 121 | 24 | 129 | 4.11e-56 | 172 |
| MsG0280010346.01.T01 | MTR_4g071150 | 77.570 | 107 | 24 | 0 | 16 | 122 | 24 | 130 | 5.68e-56 | 171 |
| MsG0280010346.01.T01 | MTR_8g086640 | 77.570 | 107 | 24 | 0 | 16 | 122 | 24 | 130 | 7.09e-56 | 171 |
| MsG0280010346.01.T01 | MTR_4g064967 | 78.302 | 106 | 23 | 0 | 16 | 121 | 24 | 129 | 7.84e-56 | 171 |
| MsG0280010346.01.T01 | MTR_7g114050 | 81.250 | 112 | 10 | 2 | 15 | 126 | 20 | 120 | 1.28e-55 | 170 |
| MsG0280010346.01.T01 | MTR_4g063410 | 77.358 | 106 | 24 | 0 | 16 | 121 | 24 | 129 | 1.67e-55 | 170 |
| MsG0280010346.01.T01 | MTR_6g005150 | 63.303 | 109 | 31 | 2 | 16 | 123 | 26 | 126 | 1.50e-40 | 132 |
| MsG0280010346.01.T01 | MTR_1g011750 | 64.545 | 110 | 37 | 2 | 14 | 122 | 24 | 132 | 2.31e-40 | 131 |
| MsG0280010346.01.T01 | MTR_1g011850 | 64.545 | 110 | 37 | 2 | 14 | 122 | 24 | 132 | 2.31e-40 | 131 |
| MsG0280010346.01.T01 | MTR_1g114050 | 57.692 | 130 | 46 | 4 | 1 | 122 | 1 | 129 | 6.37e-39 | 127 |
| MsG0280010346.01.T01 | MTR_1g071040 | 64.486 | 107 | 36 | 2 | 17 | 122 | 27 | 132 | 1.26e-38 | 127 |
| MsG0280010346.01.T01 | MTR_4g063300 | 78.378 | 74 | 16 | 0 | 37 | 110 | 10 | 83 | 6.23e-35 | 117 |
| MsG0280010346.01.T01 | MTR_4g005910 | 90.909 | 55 | 4 | 1 | 78 | 131 | 3 | 57 | 1.61e-28 | 99.4 |
| MsG0280010346.01.T01 | MTR_7g010440 | 90.566 | 53 | 5 | 0 | 70 | 122 | 122 | 174 | 8.34e-26 | 98.6 |
| MsG0280010346.01.T01 | MTR_1g069770 | 53.623 | 69 | 32 | 0 | 59 | 127 | 32 | 100 | 1.54e-19 | 77.8 |
| MsG0280010346.01.T01 | MTR_4g048490 | 45.714 | 105 | 28 | 2 | 16 | 120 | 26 | 101 | 2.40e-19 | 77.4 |
| MsG0280010346.01.T01 | MTR_7g027610 | 44.144 | 111 | 36 | 2 | 13 | 122 | 11 | 96 | 2.29e-17 | 72.4 |
| MsG0280010346.01.T01 | MTR_0653s0030 | 54.717 | 53 | 24 | 0 | 47 | 99 | 43 | 95 | 1.39e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010346.01.T01 | AT5G54640 | 93.846 | 130 | 8 | 0 | 1 | 130 | 1 | 130 | 1.98e-83 | 240 |
| MsG0280010346.01.T01 | AT4G27230 | 92.366 | 131 | 10 | 0 | 1 | 131 | 1 | 131 | 2.16e-83 | 240 |
| MsG0280010346.01.T01 | AT4G27230 | 92.366 | 131 | 10 | 0 | 1 | 131 | 1 | 131 | 2.16e-83 | 240 |
| MsG0280010346.01.T01 | AT1G51060 | 93.651 | 126 | 8 | 0 | 1 | 126 | 1 | 126 | 1.78e-81 | 235 |
| MsG0280010346.01.T01 | AT3G20670 | 90.840 | 131 | 12 | 0 | 1 | 131 | 1 | 131 | 8.37e-81 | 234 |
| MsG0280010346.01.T01 | AT1G54690 | 83.594 | 128 | 18 | 1 | 2 | 126 | 5 | 132 | 1.11e-69 | 206 |
| MsG0280010346.01.T01 | AT1G08880 | 82.812 | 128 | 19 | 1 | 2 | 126 | 5 | 132 | 2.53e-69 | 205 |
| MsG0280010346.01.T01 | AT5G59870 | 76.786 | 112 | 25 | 1 | 12 | 122 | 19 | 130 | 5.38e-58 | 177 |
| MsG0280010346.01.T01 | AT5G02560 | 77.064 | 109 | 25 | 0 | 14 | 122 | 22 | 130 | 1.62e-56 | 173 |
| MsG0280010346.01.T01 | AT5G27670 | 75.893 | 112 | 27 | 0 | 14 | 125 | 23 | 134 | 1.67e-55 | 170 |
| MsG0280010346.01.T01 | AT5G02560 | 63.158 | 133 | 25 | 1 | 14 | 122 | 22 | 154 | 3.78e-51 | 160 |
| MsG0280010346.01.T01 | AT2G38810 | 62.162 | 111 | 40 | 2 | 11 | 120 | 23 | 132 | 1.65e-38 | 127 |
| MsG0280010346.01.T01 | AT2G38810 | 62.162 | 111 | 40 | 2 | 11 | 120 | 23 | 132 | 1.65e-38 | 127 |
| MsG0280010346.01.T01 | AT2G38810 | 62.162 | 111 | 40 | 2 | 11 | 120 | 23 | 132 | 1.65e-38 | 127 |
| MsG0280010346.01.T01 | AT2G38810 | 62.162 | 111 | 40 | 2 | 11 | 120 | 23 | 132 | 1.65e-38 | 127 |
| MsG0280010346.01.T01 | AT1G52740 | 63.208 | 106 | 37 | 2 | 18 | 122 | 28 | 132 | 5.63e-38 | 125 |
| MsG0280010346.01.T01 | AT3G54560 | 62.500 | 104 | 37 | 2 | 18 | 120 | 30 | 132 | 2.39e-36 | 121 |
| MsG0280010346.01.T01 | AT3G54560 | 62.500 | 104 | 37 | 2 | 18 | 120 | 30 | 132 | 2.39e-36 | 121 |
| MsG0280010346.01.T01 | AT4G13570 | 50.000 | 92 | 44 | 2 | 24 | 114 | 28 | 118 | 4.50e-22 | 84.7 |
| MsG0280010346.01.T01 | AT4G13570 | 49.451 | 91 | 44 | 2 | 25 | 114 | 35 | 124 | 1.25e-21 | 84.0 |
Find 58 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTTATGATTGGGATTATT+AGG | 0.136766 | 2:+68389338 | MsG0280010346.01.T01:three_prime_UTR |
| GAAGCGATTTGAAGAAAATT+TGG | 0.154453 | 2:-68388298 | None:intergenic |
| AGAAAATTTGGGAACGGTTT+TGG | 0.212684 | 2:-68388286 | None:intergenic |
| AAGCAACAAGTTGTGAATAT+TGG | 0.259002 | 2:-68389184 | None:intergenic |
| TCATTCATCATCAACATTCT+TGG | 0.272830 | 2:-68389226 | None:intergenic |
| GGATTATTAGGGTTTGTTAA+TGG | 0.285912 | 2:+68389350 | MsG0280010346.01.T01:three_prime_UTR |
| TTGGAGGGACCAGCTTTCTT+TGG | 0.297734 | 2:-68389207 | None:intergenic |
| GAAGAATTGAGCAAGCTTCT+TGG | 0.338262 | 2:+68389129 | MsG0280010346.01.T01:CDS |
| AAGCGATTTGAAGAAAATTT+GGG | 0.341919 | 2:-68388297 | None:intergenic |
| GTTTATGATTGGGATTATTA+GGG | 0.358132 | 2:+68389339 | MsG0280010346.01.T01:three_prime_UTR |
| TTTCAGACAGAGTTTATGAT+TGG | 0.367692 | 2:+68389328 | MsG0280010346.01.T01:three_prime_UTR |
| ATAACTGCATCTGCAAAATC+AGG | 0.369832 | 2:-68389268 | None:intergenic |
| CGCTTCGATTTCTTCATCAA+TGG | 0.377258 | 2:+68388315 | MsG0280010346.01.T01:exon |
| AGGTTCCAGTGCTCCCAAAA+AGG | 0.377761 | 2:+68388357 | MsG0280010346.01.T01:CDS |
| AGCAACAAGTTGTGAATATT+GGG | 0.378901 | 2:-68389183 | None:intergenic |
| AGAACAGCGGCGAGGTAAAC+AGG | 0.381456 | 2:-68388481 | None:intergenic |
| AACCGAGCGATACGGCCAAC+GGG | 0.422056 | 2:-68388415 | None:intergenic |
| TTGTGATTAGGTTCTTGAAT+TGG | 0.439215 | 2:+68389032 | MsG0280010346.01.T01:intron |
| TCCCCGTTGGCCGTATCGCT+CGG | 0.440290 | 2:+68388413 | MsG0280010346.01.T01:CDS |
| GGTGATGTTACCATTGCTAA+TGG | 0.441296 | 2:+68389150 | MsG0280010346.01.T01:CDS |
| TGTGCCAAGGCACATTCAAT+TGG | 0.445049 | 2:+68389092 | MsG0280010346.01.T01:CDS |
| ATTCAAGTGAATGAAAAGAT+TGG | 0.483288 | 2:-68388232 | None:intergenic |
| TTCAGACAGAGTTTATGATT+GGG | 0.488907 | 2:+68389329 | MsG0280010346.01.T01:three_prime_UTR |
| GATTAGGTTCTTGAATTGGC+TGG | 0.498257 | 2:+68389036 | MsG0280010346.01.T01:intron |
| TTGTTGCTTCCAAAGAAAGC+TGG | 0.506478 | 2:+68389198 | MsG0280010346.01.T01:CDS |
| TCTTCATCAATGGCGGGTAG+AGG | 0.507919 | 2:+68388325 | MsG0280010346.01.T01:exon |
| TTTGGGAGCACTGGAACCTA+GGG | 0.513930 | 2:-68388353 | None:intergenic |
| TTCGATTTCTTCATCAATGG+CGG | 0.516154 | 2:+68388318 | MsG0280010346.01.T01:exon |
| TTCATCATCAACATTCTTGG+AGG | 0.525784 | 2:-68389223 | None:intergenic |
| CCGTATCGCTCGGTTCCTCA+AGG | 0.543452 | 2:+68388423 | MsG0280010346.01.T01:CDS |
| ATCGCTCGGTTCCTCAAGGC+CGG | 0.547995 | 2:+68388427 | MsG0280010346.01.T01:CDS |
| ACCTCAAGGAGTAGCAAGGC+GGG | 0.549583 | 2:+68388382 | MsG0280010346.01.T01:CDS |
| CCTTGAGGAACCGAGCGATA+CGG | 0.551489 | 2:-68388423 | None:intergenic |
| GGAAAATACGCTGAACGTGT+TGG | 0.559261 | 2:+68388448 | MsG0280010346.01.T01:CDS |
| TACGCTGAACGTGTTGGTGC+TGG | 0.564093 | 2:+68388454 | MsG0280010346.01.T01:CDS |
| ACAGCCAATTGAATGTGCCT+TGG | 0.575552 | 2:-68389096 | None:intergenic |
| GCGGGTCTTCAATTCCCCGT+TGG | 0.576005 | 2:+68388400 | MsG0280010346.01.T01:CDS |
| TCGATTTCTTCATCAATGGC+GGG | 0.581302 | 2:+68388319 | MsG0280010346.01.T01:exon |
| GCGGGTAGAGGCAAATCCCT+AGG | 0.587133 | 2:+68388337 | MsG0280010346.01.T01:CDS |
| ATTTGAAGAAAATTTGGGAA+CGG | 0.588300 | 2:-68388292 | None:intergenic |
| GGAAATTGAATCAAAACTGA+GGG | 0.590471 | 2:-68389450 | None:intergenic |
| TCATCATCAACATTCTTGGA+GGG | 0.596322 | 2:-68389222 | None:intergenic |
| GAACCGAGCGATACGGCCAA+CGG | 0.602999 | 2:-68388416 | None:intergenic |
| GGGAAATTGAATCAAAACTG+AGG | 0.605427 | 2:-68389451 | None:intergenic |
| AATTGGCTGGAAATGCTGCA+AGG | 0.606127 | 2:+68389049 | MsG0280010346.01.T01:CDS |
| ACCCGCCTTGCTACTCCTTG+AGG | 0.613927 | 2:-68388383 | None:intergenic |
| GGCACATTCAATTGGCTGTG+AGG | 0.627219 | 2:+68389100 | MsG0280010346.01.T01:CDS |
| GGCTACCTCAAGGAGTAGCA+AGG | 0.628513 | 2:+68388378 | MsG0280010346.01.T01:CDS |
| ATTGGCTGGAAATGCTGCAA+GGG | 0.641551 | 2:+68389050 | MsG0280010346.01.T01:CDS |
| CATAACACCACCATTAGCAA+TGG | 0.645676 | 2:-68389160 | None:intergenic |
| TACCTCAAGGAGTAGCAAGG+CGG | 0.663842 | 2:+68388381 | MsG0280010346.01.T01:CDS |
| GATGTTACCATTGCTAATGG+TGG | 0.667704 | 2:+68389153 | MsG0280010346.01.T01:CDS |
| AGAAGACAAGAATTGTGCCA+AGG | 0.670789 | 2:+68389079 | MsG0280010346.01.T01:CDS |
| TCTTGAATATCTCGCCGCTG+AGG | 0.682950 | 2:+68388501 | MsG0280010346.01.T01:CDS |
| ACCGAGCGATACGGCCAACG+GGG | 0.712861 | 2:-68388414 | None:intergenic |
| GGCGAGATATTCAAGAACAG+CGG | 0.714017 | 2:-68388494 | None:intergenic |
| GATATTCAAGAACAGCGGCG+AGG | 0.723455 | 2:-68388489 | None:intergenic |
| GTAAAGGGAAATTACCTCAG+CGG | 0.729992 | 2:-68388515 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGATTAATTACATAAAATT+AGG | - | Chr2:68388900-68388919 | None:intergenic | 10.0% |
| !! | TGATTAATTACATAAAATTA+GGG | - | Chr2:68388899-68388918 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTTTTGTGATT+AGG | + | Chr2:68389020-68389039 | MsG0280010346.01.T01:intron | 10.0% |
| !! | ATGAGTAATATATTGAAATT+TGG | - | Chr2:68388779-68388798 | None:intergenic | 15.0% |
| !! | TGAGTAATATATTGAAATTT+GGG | - | Chr2:68388778-68388797 | None:intergenic | 15.0% |
| !!! | TTGTTGAATTCAAATTTTTT+AGG | + | Chr2:68388978-68388997 | MsG0280010346.01.T01:intron | 15.0% |
| !! | TACATACATGTAAAAAATCT+AGG | + | Chr2:68388850-68388869 | MsG0280010346.01.T01:intron | 20.0% |
| ! | AAGCGATTTGAAGAAAATTT+GGG | - | Chr2:68388300-68388319 | None:intergenic | 25.0% |
| ! | AGTTTATGATTGGGATTATT+AGG | + | Chr2:68389338-68389357 | MsG0280010346.01.T01:three_prime_UTR | 25.0% |
| ! | ATTTGAAGAAAATTTGGGAA+CGG | - | Chr2:68388295-68388314 | None:intergenic | 25.0% |
| ! | GTTTATGATTGGGATTATTA+GGG | + | Chr2:68389339-68389358 | MsG0280010346.01.T01:three_prime_UTR | 25.0% |
| ! | TATGAATTTGCCTAAAATTG+TGG | - | Chr2:68388626-68388645 | None:intergenic | 25.0% |
| ! | TCATAGTTCTTGGATAATTT+AGG | + | Chr2:68388641-68388660 | MsG0280010346.01.T01:intron | 25.0% |
| ! | TTGAAAAGAAAAGAGTGATT+TGG | - | Chr2:68388554-68388573 | None:intergenic | 25.0% |
| !!! | AAATCGATTTCCACAATTTT+AGG | + | Chr2:68388613-68388632 | MsG0280010346.01.T01:intron | 25.0% |
| !!! | GTTTCATATTTTGTTGTTTC+TGG | + | Chr2:68389299-68389318 | MsG0280010346.01.T01:three_prime_UTR | 25.0% |
| AAGCAACAAGTTGTGAATAT+TGG | - | Chr2:68389187-68389206 | None:intergenic | 30.0% | |
| AGCAACAAGTTGTGAATATT+GGG | - | Chr2:68389186-68389205 | None:intergenic | 30.0% | |
| ATATACATGTCGTAAGATCT+AGG | + | Chr2:68388578-68388597 | MsG0280010346.01.T01:intron | 30.0% | |
| ATATACATGTTGCATGATCT+AGG | + | Chr2:68388730-68388749 | MsG0280010346.01.T01:intron | 30.0% | |
| GAAGCGATTTGAAGAAAATT+TGG | - | Chr2:68388301-68388320 | None:intergenic | 30.0% | |
| TATACATGTCGTAAGATCTA+GGG | + | Chr2:68388579-68388598 | MsG0280010346.01.T01:intron | 30.0% | |
| TATACATGTTGCATGATCTA+GGG | + | Chr2:68388731-68388750 | MsG0280010346.01.T01:intron | 30.0% | |
| TCATTCATCATCAACATTCT+TGG | - | Chr2:68389229-68389248 | None:intergenic | 30.0% | |
| TTAGGCAAATTCATAGTTCT+TGG | + | Chr2:68388631-68388650 | MsG0280010346.01.T01:intron | 30.0% | |
| TTCAGACAGAGTTTATGATT+GGG | + | Chr2:68389329-68389348 | MsG0280010346.01.T01:three_prime_UTR | 30.0% | |
| TTGTGATTAGGTTCTTGAAT+TGG | + | Chr2:68389032-68389051 | MsG0280010346.01.T01:intron | 30.0% | |
| TTTCAGACAGAGTTTATGAT+TGG | + | Chr2:68389328-68389347 | MsG0280010346.01.T01:three_prime_UTR | 30.0% | |
| !! | GGATTATTAGGGTTTGTTAA+TGG | + | Chr2:68389350-68389369 | MsG0280010346.01.T01:three_prime_UTR | 30.0% |
| !!! | TTGTTACTTTTGCATGAGAA+TGG | + | Chr2:68389407-68389426 | MsG0280010346.01.T01:three_prime_UTR | 30.0% |
| ATAACTGCATCTGCAAAATC+AGG | - | Chr2:68389271-68389290 | None:intergenic | 35.0% | |
| TCATCATCAACATTCTTGGA+GGG | - | Chr2:68389225-68389244 | None:intergenic | 35.0% | |
| TTCATCATCAACATTCTTGG+AGG | - | Chr2:68389226-68389245 | None:intergenic | 35.0% | |
| TTCGATTTCTTCATCAATGG+CGG | + | Chr2:68388318-68388337 | MsG0280010346.01.T01:exon | 35.0% | |
| ! | AGAAAATTTGGGAACGGTTT+TGG | - | Chr2:68388289-68388308 | None:intergenic | 35.0% |
| AGAAGACAAGAATTGTGCCA+AGG | + | Chr2:68389079-68389098 | MsG0280010346.01.T01:CDS | 40.0% | |
| CATAACACCACCATTAGCAA+TGG | - | Chr2:68389163-68389182 | None:intergenic | 40.0% | |
| CGCTTCGATTTCTTCATCAA+TGG | + | Chr2:68388315-68388334 | MsG0280010346.01.T01:exon | 40.0% | |
| GAAGAATTGAGCAAGCTTCT+TGG | + | Chr2:68389129-68389148 | MsG0280010346.01.T01:CDS | 40.0% | |
| GATGTTACCATTGCTAATGG+TGG | + | Chr2:68389153-68389172 | MsG0280010346.01.T01:CDS | 40.0% | |
| GATTAGGTTCTTGAATTGGC+TGG | + | Chr2:68389036-68389055 | MsG0280010346.01.T01:intron | 40.0% | |
| GGTGATGTTACCATTGCTAA+TGG | + | Chr2:68389150-68389169 | MsG0280010346.01.T01:CDS | 40.0% | |
| GTAAAGGGAAATTACCTCAG+CGG | - | Chr2:68388518-68388537 | None:intergenic | 40.0% | |
| TCGATTTCTTCATCAATGGC+GGG | + | Chr2:68388319-68388338 | MsG0280010346.01.T01:exon | 40.0% | |
| ! | AACACGTTCAGCGTATTTTC+CGG | - | Chr2:68388449-68388468 | None:intergenic | 40.0% |
| ! | GTGATTTGGAAGTTTGAGAG+CGG | - | Chr2:68388540-68388559 | None:intergenic | 40.0% |
| ! | TTGTTGCTTCCAAAGAAAGC+TGG | + | Chr2:68389198-68389217 | MsG0280010346.01.T01:CDS | 40.0% |
| AATTGGCTGGAAATGCTGCA+AGG | + | Chr2:68389049-68389068 | MsG0280010346.01.T01:CDS | 45.0% | |
| ACAGCCAATTGAATGTGCCT+TGG | - | Chr2:68389099-68389118 | None:intergenic | 45.0% | |
| ATTGGCTGGAAATGCTGCAA+GGG | + | Chr2:68389050-68389069 | MsG0280010346.01.T01:CDS | 45.0% | |
| GGAAAATACGCTGAACGTGT+TGG | + | Chr2:68388448-68388467 | MsG0280010346.01.T01:CDS | 45.0% | |
| GGAAGTTTGAGAGCGGTAAA+GGG | - | Chr2:68388533-68388552 | None:intergenic | 45.0% | |
| GGCGAGATATTCAAGAACAG+CGG | - | Chr2:68388497-68388516 | None:intergenic | 45.0% | |
| TGGAAGTTTGAGAGCGGTAA+AGG | - | Chr2:68388534-68388553 | None:intergenic | 45.0% | |
| TGTGCCAAGGCACATTCAAT+TGG | + | Chr2:68389092-68389111 | MsG0280010346.01.T01:CDS | 45.0% | |
| ! | ACTCCTTGAGGTAGCCTTTT+TGG | - | Chr2:68388374-68388393 | None:intergenic | 45.0% |
| ! | CTCCTTGAGGTAGCCTTTTT+GGG | - | Chr2:68388373-68388392 | None:intergenic | 45.0% |
| AGGTTCCAGTGCTCCCAAAA+AGG | + | Chr2:68388357-68388376 | MsG0280010346.01.T01:CDS | 50.0% | |
| CTCCCAAAAAGGCTACCTCA+AGG | + | Chr2:68388368-68388387 | MsG0280010346.01.T01:CDS | 50.0% | |
| GATATTCAAGAACAGCGGCG+AGG | - | Chr2:68388492-68388511 | None:intergenic | 50.0% | |
| GGCACATTCAATTGGCTGTG+AGG | + | Chr2:68389100-68389119 | MsG0280010346.01.T01:CDS | 50.0% | |
| TACCTCAAGGAGTAGCAAGG+CGG | + | Chr2:68388381-68388400 | MsG0280010346.01.T01:CDS | 50.0% | |
| TCTTGAATATCTCGCCGCTG+AGG | + | Chr2:68388501-68388520 | MsG0280010346.01.T01:CDS | 50.0% | |
| TTGGAGGGACCAGCTTTCTT+TGG | - | Chr2:68389210-68389229 | None:intergenic | 50.0% | |
| !! | TCTTCATCAATGGCGGGTAG+AGG | + | Chr2:68388325-68388344 | MsG0280010346.01.T01:exon | 50.0% |
| !! | TTTGGGAGCACTGGAACCTA+GGG | - | Chr2:68388356-68388375 | None:intergenic | 50.0% |
| !!! | TTTTGGGAGCACTGGAACCT+AGG | - | Chr2:68388357-68388376 | None:intergenic | 50.0% |
| ACCTCAAGGAGTAGCAAGGC+GGG | + | Chr2:68388382-68388401 | MsG0280010346.01.T01:CDS | 55.0% | |
| AGAACAGCGGCGAGGTAAAC+AGG | - | Chr2:68388484-68388503 | None:intergenic | 55.0% | |
| CCTTGAGGAACCGAGCGATA+CGG | - | Chr2:68388426-68388445 | None:intergenic | 55.0% | |
| GGCTACCTCAAGGAGTAGCA+AGG | + | Chr2:68388378-68388397 | MsG0280010346.01.T01:CDS | 55.0% | |
| ! | CAGCGTATTTTCCGGCCTTG+AGG | - | Chr2:68388441-68388460 | None:intergenic | 55.0% |
| ! | TACGCTGAACGTGTTGGTGC+TGG | + | Chr2:68388454-68388473 | MsG0280010346.01.T01:CDS | 55.0% |
| !! | GGTAGCCTTTTTGGGAGCAC+TGG | - | Chr2:68388365-68388384 | None:intergenic | 55.0% |
| AACCGAGCGATACGGCCAAC+GGG | - | Chr2:68388418-68388437 | None:intergenic | 60.0% | |
| ACCCGCCTTGCTACTCCTTG+AGG | - | Chr2:68388386-68388405 | None:intergenic | 60.0% | |
| ATCGCTCGGTTCCTCAAGGC+CGG | + | Chr2:68388427-68388446 | MsG0280010346.01.T01:CDS | 60.0% | |
| CCGTATCGCTCGGTTCCTCA+AGG | + | Chr2:68388423-68388442 | MsG0280010346.01.T01:CDS | 60.0% | |
| GAACCGAGCGATACGGCCAA+CGG | - | Chr2:68388419-68388438 | None:intergenic | 60.0% | |
| GCGGGTAGAGGCAAATCCCT+AGG | + | Chr2:68388337-68388356 | MsG0280010346.01.T01:CDS | 60.0% | |
| GCGGGTCTTCAATTCCCCGT+TGG | + | Chr2:68388400-68388419 | MsG0280010346.01.T01:CDS | 60.0% | |
| ACCGAGCGATACGGCCAACG+GGG | - | Chr2:68388417-68388436 | None:intergenic | 65.0% | |
| TCCCCGTTGGCCGTATCGCT+CGG | + | Chr2:68388413-68388432 | MsG0280010346.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 68388234 | 68389463 | 68388234 | ID=MsG0280010346.01;Name=MsG0280010346.01 |
| Chr2 | mRNA | 68388234 | 68389463 | 68388234 | ID=MsG0280010346.01.T01;Parent=MsG0280010346.01;Name=MsG0280010346.01.T01;_AED=0.47;_eAED=0.47;_QI=100|1|1|1|1|1|2|215|131 |
| Chr2 | exon | 68388234 | 68388522 | 68388234 | ID=MsG0280010346.01.T01:exon:18542;Parent=MsG0280010346.01.T01 |
| Chr2 | exon | 68389042 | 68389463 | 68389042 | ID=MsG0280010346.01.T01:exon:18543;Parent=MsG0280010346.01.T01 |
| Chr2 | five_prime_UTR | 68388234 | 68388333 | 68388234 | ID=MsG0280010346.01.T01:five_prime_utr;Parent=MsG0280010346.01.T01 |
| Chr2 | CDS | 68388334 | 68388522 | 68388334 | ID=MsG0280010346.01.T01:cds;Parent=MsG0280010346.01.T01 |
| Chr2 | CDS | 68389042 | 68389248 | 68389042 | ID=MsG0280010346.01.T01:cds;Parent=MsG0280010346.01.T01 |
| Chr2 | three_prime_UTR | 68389249 | 68389463 | 68389249 | ID=MsG0280010346.01.T01:three_prime_utr;Parent=MsG0280010346.01.T01 |
| Gene Sequence |
| Protein sequence |
