AlfalfaGEDB | MsG0780041592.01

M. sativa cultivar ZhongmuNo.1 / MsG0780041592.01

KEGG: K11251
GO: GO:0000786 GO:0003677 GO:0005634 GO:0046982
PFAM: PF00125 PF16211

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041592.01.T01	RHN49328.1	97.931	145	3	0	10	154	51	195	3.68E-94	281

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041592.01.T01	O65759	97.122	139	4	0	16	154	1	139	8.08E-94	270

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041592.01.T01	A0A396H9E7	97.931	145	3	0	10	154	51	195	1.76e-94	281

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080049140.01	MsG0780041592.01	0.813625	2.327903e-51	1.527982e-48
MsG0180000314.01	MsG0780041592.01	0.810969	8.849503e-51	5.410977e-48
MsG0180003796.01	MsG0780041592.01	0.803783	2.956645e-49	1.499018e-46
MsG0180003920.01	MsG0780041592.01	0.803062	4.169273e-49	2.074947e-46
MsG0180004049.01	MsG0780041592.01	0.801449	8.957848e-49	4.279111e-46
MsG0180004711.01	MsG0780041592.01	0.831679	1.456294e-55	1.591737e-52
MsG0180006000.01	MsG0780041592.01	0.804972	1.671254e-49	8.736746e-47
MsG0780040620.01	MsG0780041592.01	0.807359	5.253356e-50	2.919981e-47
MsG0780040841.01	MsG0780041592.01	0.807117	5.910703e-50	3.264727e-47
MsG0780040844.01	MsG0780041592.01	0.828113	1.076725e-54	1.060184e-51
MsG0780040896.01	MsG0780041592.01	0.808255	3.387812e-50	1.927888e-47
MsG0280011003.01	MsG0780041592.01	0.829049	6.397658e-55	6.472679e-52
MsG0280011013.01	MsG0780041592.01	0.811935	5.457217e-51	3.422696e-48
MsG0380012788.01	MsG0780041592.01	0.814144	1.788757e-51	1.190716e-48
MsG0380012808.01	MsG0780041592.01	0.807308	5.385482e-50	2.989615e-47
MsG0380014289.01	MsG0780041592.01	0.812420	4.278772e-51	2.719330e-48
MsG0380014387.01	MsG0780041592.01	0.830361	3.066091e-55	3.223312e-52
MsG0380014684.01	MsG0780041592.01	0.826988	2.004605e-54	1.910011e-51
MsG0380014703.01	MsG0780041592.01	0.808921	2.442180e-50	1.414141e-47
MsG0680031353.01	MsG0780041592.01	0.803248	3.815955e-49	1.908261e-46
MsG0680031701.01	MsG0780041592.01	0.806063	9.867175e-50	5.304803e-47
MsG0680032773.01	MsG0780041592.01	0.832228	1.065770e-55	1.183776e-52
MsG0480020927.01	MsG0780041592.01	0.846453	2.151183e-59	3.704905e-56
MsG0480021302.01	MsG0780041592.01	0.838322	3.080273e-57	4.110753e-54
MsG0480022982.01	MsG0780041592.01	0.840072	1.083360e-57	1.525947e-54
MsG0480023262.01	MsG0780041592.01	0.819443	1.158588e-52	8.916915e-50
MsG0480023458.01	MsG0780041592.01	0.859078	5.302035e-63	1.382888e-59
MsG0580024489.01	MsG0780041592.01	0.816077	6.660520e-52	4.673336e-49
MsG0580025203.01	MsG0780041592.01	0.801515	8.684232e-49	4.155277e-46
MsG0580025506.01	MsG0780041592.01	0.802667	5.030949e-49	2.478803e-46
MsG0380015234.01	MsG0780041592.01	0.837836	4.108554e-57	5.403136e-54
MsG0380015249.01	MsG0780041592.01	0.813645	2.304904e-51	1.513686e-48
MsG0480018397.01	MsG0780041592.01	0.839038	2.011999e-57	2.744539e-54
MsG0580028756.01	MsG0780041592.01	0.816869	4.426555e-52	3.173949e-49
MsG0280006540.01	MsG0780041592.01	0.831628	1.499125e-55	1.636029e-52
MsG0280009289.01	MsG0780041592.01	0.813747	2.189198e-51	1.441609e-48

PPI

Gene1	Gene2	Type
MsG0880044910.01	MsG0780041592.01	PPI
MsG0780041592.01	MsG0780041147.01	PPI
MsG0580029044.01	MsG0780041592.01	PPI
MsG0780038642.01	MsG0780041592.01	PPI
MsG0380016577.01	MsG0780041592.01	PPI
MsG0880046575.01	MsG0780041592.01	PPI
MsG0780041592.01	MsG0780037489.01	PPI
MsG0480021015.01	MsG0780041592.01	PPI
MsG0880045015.01	MsG0780041592.01	PPI
MsG0780041592.01	MsG0480022307.01	PPI
MsG0480020969.01	MsG0780041592.01	PPI
MsG0780041592.01	MsG0480023842.01	PPI
MsG0780041592.01	MsG0580025504.01	PPI
MsG0780041592.01	MsG0280010346.01	PPI
MsG0780041592.01	MsG0380016622.01	PPI
MsG0780041592.01	MsG0880046213.01	PPI
MsG0580025506.01	MsG0780041592.01	PPI
MsG0480020927.01	MsG0780041592.01	PPI
MsG0780039623.01	MsG0780041592.01	PPI
MsG0780041592.01	MsG0780036534.01	PPI
MsG0480020919.01	MsG0780041592.01	PPI
MsG0780041592.01	MsG0280007919.01	PPI
MsG0480021049.01	MsG0780041592.01	PPI
MsG0780041592.01	MsG0480020920.01	PPI
MsG0480020918.01	MsG0780041592.01	PPI
MsG0380012788.01	MsG0780041592.01	PPI
MsG0180000243.01	MsG0780041592.01	PPI
MsG0880042844.01	MsG0780041592.01	PPI
MsG0780041592.01	MsG0180006082.01	PPI
MsG0780041592.01	MsG0780041593.01	PPI
MsG0480021252.01	MsG0780041592.01	PPI
MsG0480021174.01	MsG0780041592.01	PPI
MsG0280006836.01	MsG0780041592.01	PPI
MsG0880044910.01	MsG0780041592.01	PPI
MsG0480021302.01	MsG0780041592.01	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041592.01.T01	MTR_7g114060	100.000	139	0	0	16	154	1	139	2.64e-97	276
MsG0780041592.01.T01	MTR_7g114040	100.000	139	0	0	16	154	1	139	2.64e-97	276
MsG0780041592.01.T01	MTR_7g108320	95.775	142	3	1	16	154	1	142	3.47e-93	266
MsG0780041592.01.T01	MTR_7g093910	87.313	134	17	0	21	154	9	142	8.34e-82	238
MsG0780041592.01.T01	MTR_7g114050	87.023	131	6	2	24	154	11	130	3.38e-72	213
MsG0780041592.01.T01	MTR_2g082510	86.777	121	12	1	25	141	3	123	3.05e-69	205
MsG0780041592.01.T01	MTR_2g082220	84.921	126	11	2	25	144	3	126	3.72e-69	205
MsG0780041592.01.T01	MTR_2g096610	75.000	120	30	0	33	152	21	140	7.76e-60	182
MsG0780041592.01.T01	MTR_7g113160	76.068	117	28	0	24	140	16	132	4.20e-59	180
MsG0780041592.01.T01	MTR_4g063280	79.091	110	23	0	33	142	17	126	3.25e-58	178
MsG0780041592.01.T01	MTR_2g096570	81.132	106	20	0	34	139	23	128	4.33e-58	178
MsG0780041592.01.T01	MTR_4g064005	81.132	106	20	0	34	139	24	129	4.70e-58	177
MsG0780041592.01.T01	MTR_4g063410	79.439	107	22	0	34	140	24	130	4.91e-58	177
MsG0780041592.01.T01	MTR_8g086640	81.132	106	20	0	34	139	24	129	5.53e-58	177
MsG0780041592.01.T01	MTR_4g071150	80.374	107	21	0	34	140	24	130	6.09e-58	177
MsG0780041592.01.T01	MTR_4g064967	81.132	106	20	0	34	139	24	129	7.44e-58	177
MsG0780041592.01.T01	MTR_6g005150	63.158	114	33	2	34	146	26	131	8.78e-42	136
MsG0780041592.01.T01	MTR_1g011750	58.197	122	49	2	18	138	10	130	1.53e-39	130
MsG0780041592.01.T01	MTR_1g011850	58.197	122	49	2	18	138	10	130	1.53e-39	130
MsG0780041592.01.T01	MTR_1g114050	62.857	105	37	2	35	138	24	127	7.58e-38	126
MsG0780041592.01.T01	MTR_1g071040	63.462	104	36	2	36	138	28	130	1.65e-37	125
MsG0780041592.01.T01	MTR_4g063300	67.708	96	23	1	55	142	10	105	8.52e-36	120
MsG0780041592.01.T01	MTR_4g005910	88.889	45	5	0	97	141	4	48	8.25e-23	85.5
MsG0780041592.01.T01	MTR_7g010440	54.444	90	41	0	62	151	96	185	3.21e-22	90.1
MsG0780041592.01.T01	MTR_4g048490	44.860	107	30	2	34	140	26	103	4.64e-20	80.1
MsG0780041592.01.T01	MTR_1g069770	55.224	67	30	0	77	143	32	98	1.93e-18	75.9
MsG0780041592.01.T01	MTR_7g027610	41.818	110	32	3	33	138	13	94	7.99e-16	69.3
MsG0780041592.01.T01	MTR_0653s0030	53.846	52	24	0	66	117	44	95	7.43e-12	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041592.01.T01	AT1G54690	92.958	142	7	1	16	154	1	142	2.69e-90	259
MsG0780041592.01.T01	AT1G08880	94.118	136	8	0	19	154	7	142	6.60e-90	258
MsG0780041592.01.T01	AT4G27230	86.290	124	13	1	25	144	3	126	4.50e-70	207
MsG0780041592.01.T01	AT4G27230	86.290	124	13	1	25	144	3	126	4.50e-70	207
MsG0780041592.01.T01	AT5G54640	82.946	129	19	1	16	144	1	126	1.49e-69	206
MsG0780041592.01.T01	AT1G51060	83.871	124	16	1	25	144	3	126	1.57e-68	204
MsG0780041592.01.T01	AT3G20670	84.677	124	15	1	25	144	3	126	5.77e-68	202
MsG0780041592.01.T01	AT5G59870	73.643	129	29	2	16	139	1	129	9.82e-61	184
MsG0780041592.01.T01	AT5G27670	73.438	128	29	1	17	139	3	130	4.45e-58	178
MsG0780041592.01.T01	AT5G02560	79.439	107	22	0	33	139	23	129	3.36e-57	176
MsG0780041592.01.T01	AT5G02560	64.885	131	22	1	33	139	23	153	1.04e-51	162
MsG0780041592.01.T01	AT2G38810	62.617	107	38	2	33	138	27	132	1.84e-38	127
MsG0780041592.01.T01	AT2G38810	62.617	107	38	2	33	138	27	132	1.84e-38	127
MsG0780041592.01.T01	AT2G38810	62.617	107	38	2	33	138	27	132	1.84e-38	127
MsG0780041592.01.T01	AT2G38810	62.617	107	38	2	33	138	27	132	1.84e-38	127
MsG0780041592.01.T01	AT1G52740	61.905	105	38	2	35	138	27	130	4.28e-38	127
MsG0780041592.01.T01	AT3G54560	60.952	105	39	2	35	138	29	132	6.62e-37	124
MsG0780041592.01.T01	AT3G54560	60.952	105	39	2	35	138	29	132	6.62e-37	124
MsG0780041592.01.T01	AT4G13570	43.220	118	65	2	16	132	2	118	8.83e-23	87.4
MsG0780041592.01.T01	AT4G13570	49.451	91	44	2	43	132	35	124	1.98e-21	84.3

Find 53 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTGCCCTTTCCAACCTTCTT+AGG	0.222545	7:-92804580	None:intergenic
ATCTGCTTCTCAAGAATTCT+AGG	0.264115	7:+92804615	MsG0780041592.01.T01:CDS
TGAAGAACTCAGCAAGCTTT+TGG	0.286717	7:+92804501	MsG0780041592.01.T01:CDS
AAGCTGAATTGCCTTATTAC+TGG	0.290079	7:+92804817	MsG0780041592.01.T01:three_prime_UTR
GAAACTGATTTGGCAGCCTT+TGG	0.309618	7:-92804156	None:intergenic
TGAAGATCTTGAAACTGATT+TGG	0.311823	7:-92804166	None:intergenic
AACACGTTCGGCGTATTTAC+CGG	0.321195	7:-92804238	None:intergenic
GGAAAGGGCAAAGGAGAAAT+TGG	0.326882	7:+92804592	MsG0780041592.01.T01:CDS
AGCAAAGTCTGATGAATATT+AGG	0.347792	7:-92804556	None:intergenic
AATTTACTAAGCCAGTAATA+AGG	0.403837	7:-92804828	None:intergenic
TCAGACTTTGCTACCTAAGA+AGG	0.421667	7:+92804567	MsG0780041592.01.T01:CDS
GGCACATTCAGCTTGCTGTT+AGG	0.440630	7:+92804473	MsG0780041592.01.T01:CDS
GAGTTCCACTGGCACAACTA+AGG	0.456467	7:+92804119	MsG0780041592.01.T01:CDS
AGGACGGCGGAGAGGTAGAC+AGG	0.463287	7:-92804273	None:intergenic
GGGACTGTGACCATTGCTAA+TGG	0.468303	7:+92804523	MsG0780041592.01.T01:CDS
AGCACCGGCACCAACACGTT+CGG	0.480590	7:-92804250	None:intergenic
GTTTCAAGATCTTCAAAGGC+AGG	0.496108	7:+92804174	MsG0780041592.01.T01:CDS
CTGGCACAACTAAGGGCGGA+AGG	0.502885	7:+92804127	MsG0780041592.01.T01:CDS
ATCAGTTTCAAGATCTTCAA+AGG	0.503488	7:+92804170	MsG0780041592.01.T01:CDS
CTACCTAAGAAGGTTGGAAA+GGG	0.510822	7:+92804577	MsG0780041592.01.T01:CDS
TCTGCTTCTCAAGAATTCTA+GGG	0.519604	7:+92804616	MsG0780041592.01.T01:CDS
GGCACAACTAAGGGCGGAAG+GGG	0.525782	7:+92804129	MsG0780041592.01.T01:CDS
AATTGGCTGGGAACGCTGCA+AGG	0.533557	7:+92804422	MsG0780041592.01.T01:CDS
ACTTTGCTACCTAAGAAGGT+TGG	0.535784	7:+92804571	MsG0780041592.01.T01:CDS
TGGCACAACTAAGGGCGGAA+GGG	0.543224	7:+92804128	MsG0780041592.01.T01:CDS
AGTTCCACTGGCACAACTAA+GGG	0.549244	7:+92804120	MsG0780041592.01.T01:CDS
TACGCCGAACGTGTTGGTGC+CGG	0.556200	7:+92804246	MsG0780041592.01.T01:CDS
GCTACCTAAGAAGGTTGGAA+AGG	0.557785	7:+92804576	MsG0780041592.01.T01:CDS
ATTGGCTGGGAACGCTGCAA+GGG	0.562499	7:+92804423	MsG0780041592.01.T01:CDS
ACAGCAAGCTGAATGTGCCT+TGG	0.570928	7:-92804469	None:intergenic
GAATGTGCCTTGGTACAATA+CGG	0.571461	7:-92804459	None:intergenic
GGGCGGAAGGGGTAAGCCAA+AGG	0.573881	7:+92804140	MsG0780041592.01.T01:CDS
CGGCGTATTTACCGGCCTTG+AGG	0.577173	7:-92804230	None:intergenic
ATCGCGAGATTCCTCAAGGC+CGG	0.578871	7:+92804219	MsG0780041592.01.T01:CDS
TCCGCCCTTAGTTGTGCCAG+TGG	0.580065	7:-92804124	None:intergenic
GAATCTCGCGATTCTTCCGA+CGG	0.592664	7:-92804208	None:intergenic
GGTAAATACGCCGAACGTGT+TGG	0.593895	7:+92804240	MsG0780041592.01.T01:CDS
TATGTCACAAACTAAACTGA+TGG	0.594486	7:+92804771	MsG0780041592.01.T01:three_prime_UTR
CCTTGAGTATCTCGCTGCTG+AGG	0.612329	7:+92804293	MsG0780041592.01.T01:CDS
AAGAAGGTTGGAAAGGGCAA+AGG	0.621113	7:+92804583	MsG0780041592.01.T01:CDS
AATCTCGCGATTCTTCCGAC+GGG	0.626786	7:-92804207	None:intergenic
TAAAACACCACCATTAGCAA+TGG	0.630364	7:-92804533	None:intergenic
CCTCAGCAGCGAGATACTCA+AGG	0.638807	7:-92804293	None:intergenic
GGAGAGGTAGACAGGAGCAC+CGG	0.644805	7:-92804265	None:intergenic
TAAGCTATAATTGCTCAGAA+CGG	0.646047	7:-92804649	None:intergenic
TCCACTGGCACAACTAAGGG+CGG	0.647888	7:+92804123	MsG0780041592.01.T01:CDS
AAGAATCGCGAGATTCCTCA+AGG	0.651972	7:+92804215	MsG0780041592.01.T01:CDS
ACTGTGACCATTGCTAATGG+TGG	0.653058	7:+92804526	MsG0780041592.01.T01:CDS
GCAGGTCTTCAATTTCCCGT+CGG	0.653866	7:+92804192	MsG0780041592.01.T01:CDS
GATACTCAAGGACGGCGGAG+AGG	0.669935	7:-92804281	None:intergenic
AGCAGCGAGATACTCAAGGA+CGG	0.684917	7:-92804289	None:intergenic
AGAAGAACCGTATTGTACCA+AGG	0.686303	7:+92804452	MsG0780041592.01.T01:CDS
AGCGAGATACTCAAGGACGG+CGG	0.736224	7:-92804286	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATAAAAAATTGCAAAAAAAA+AGG	+	Chr7:92803358-92803377	MsG0780041592.01.T01:intron	10.0%
!!!	ATAAAAAAAACGTATTTTAT+TGG	+	Chr7:92803052-92803071	MsG0780041592.01.T01:intron	10.0%
!!!	ATAAAATACGTTTTTTTTAT+AGG	-	Chr7:92803052-92803071	None:intergenic	10.0%
!!!	TTAAAAACCAATTATATTTT+TGG	-	Chr7:92803435-92803454	None:intergenic	10.0%
!!	AAAATACAGTTTAATCAAAT+TGG	-	Chr7:92804380-92804399	None:intergenic	15.0%
!!	AATATCACCAAAAATATAAT+TGG	+	Chr7:92803425-92803444	MsG0780041592.01.T01:intron	15.0%
!!	ACAAATAATCATAAAAAGAA+AGG	+	Chr7:92802920-92802939	MsG0780041592.01.T01:intron	15.0%
!!!	AAAAACAAATGAATATGTTT+TGG	-	Chr7:92802816-92802835	None:intergenic	15.0%
!!!	AAATATAATTGGTTTTTAAG+AGG	+	Chr7:92803436-92803455	MsG0780041592.01.T01:intron	15.0%
!!!	AATTTTTTTATAACTCCAAA+TGG	-	Chr7:92802786-92802805	None:intergenic	15.0%
!!!	ATAATTTTTAATCAACATCA+AGG	-	Chr7:92803313-92803332	None:intergenic	15.0%
!!!	ATTAAACTGTATTTTCATTT+TGG	+	Chr7:92804385-92804404	MsG0780041592.01.T01:intron	15.0%
!!!	TTCTTTTTATGATTATTTGT+AGG	-	Chr7:92802920-92802939	None:intergenic	15.0%
!!	AAAACCTAAAACTTGAATTT+GGG	-	Chr7:92804075-92804094	None:intergenic	20.0%
!!	AACTATTAATACTTATGCTA+TGG	-	Chr7:92802998-92803017	None:intergenic	20.0%
!!	TGATCTATACAAGTTTAAAT+AGG	+	Chr7:92803332-92803351	MsG0780041592.01.T01:intron	20.0%
!!	TTCTCAAAATTGATTGTTAA+TGG	-	Chr7:92802674-92802693	None:intergenic	20.0%
!!!	AATACTATGCTTTTCATTAT+CGG	-	Chr7:92804721-92804740	None:intergenic	20.0%
!!!	GTATTTTCATTTTGGTATTT+AGG	+	Chr7:92804393-92804412	MsG0780041592.01.T01:intron	20.0%
!!!	TAAAAAGAAAGGTTGATTAA+TGG	+	Chr7:92802931-92802950	MsG0780041592.01.T01:intron	20.0%
!!!	TATTATTGAAATTGATAGCA+TGG	+	Chr7:92802875-92802894	MsG0780041592.01.T01:intron	20.0%
!!!	TCTCTTTTTTGTATAATGTA+GGG	+	Chr7:92804346-92804365	MsG0780041592.01.T01:intron	20.0%
!!!	TTTTCCACAGTTTTTTTTAT+TGG	-	Chr7:92803849-92803868	None:intergenic	20.0%
!!!	TTTTTTCTTTTAACCATGAT+TGG	-	Chr7:92803717-92803736	None:intergenic	20.0%
!	AAAAAGAGAAATTCTTGTGT+AGG	-	Chr7:92803795-92803814	None:intergenic	25.0%
!	AAAATCGATCTTGAAATCTA+AGG	+	Chr7:92803491-92803510	MsG0780041592.01.T01:intron	25.0%
!	AAACTTGAATTTGGGAAATT+CGG	-	Chr7:92804067-92804086	None:intergenic	25.0%
!	AATAAAAGATGTTTACCTGA+AGG	+	Chr7:92803083-92803102	MsG0780041592.01.T01:intron	25.0%
!	ACTTGATATGTTTCATTGTA+TGG	+	Chr7:92803283-92803302	MsG0780041592.01.T01:intron	25.0%
!	AGAATACTAACTGCAAATAA+TGG	-	Chr7:92803688-92803707	None:intergenic	25.0%
!	ATAAAAGATGTTTACCTGAA+GGG	+	Chr7:92803084-92803103	MsG0780041592.01.T01:intron	25.0%
!	ATACAAAAAAGAGAGTGAAA+GGG	-	Chr7:92804340-92804359	None:intergenic	25.0%
!	CAAAGCTATGACTTAATTAT+TGG	+	Chr7:92802415-92802434	MsG0780041592.01.T01:intron	25.0%
!	CAATAATTAAGTCATAGCTT+TGG	-	Chr7:92802417-92802436	None:intergenic	25.0%
!	CATACCAATAAAAAAAACTG+TGG	+	Chr7:92803842-92803861	MsG0780041592.01.T01:intron	25.0%
!	GAAAACCTAAAACTTGAATT+TGG	-	Chr7:92804076-92804095	None:intergenic	25.0%
!	GTTTGTAAGAATGATATGTT+AGG	-	Chr7:92803574-92803593	None:intergenic	25.0%
!	TAAAAGAGAAATTCTTGTGT+AGG	+	Chr7:92803542-92803561	MsG0780041592.01.T01:intron	25.0%
!	TATACAAAAAAGAGAGTGAA+AGG	-	Chr7:92804341-92804360	None:intergenic	25.0%
!!	AAAACAACGTATGTTCTTTT+TGG	+	Chr7:92803394-92803413	MsG0780041592.01.T01:intron	25.0%
!!	GATTAATGGATATTCTTCAA+AGG	+	Chr7:92802945-92802964	MsG0780041592.01.T01:intron	25.0%
!!!	ATTTCCCAAATTCAAGTTTT+AGG	+	Chr7:92804068-92804087	MsG0780041592.01.T01:intron	25.0%
!!!	CTCTCTTTTTTGTATAATGT+AGG	+	Chr7:92804345-92804364	MsG0780041592.01.T01:intron	25.0%
!!!	GTACTTTTTAATCATGATCA+TGG	+	Chr7:92803211-92803230	MsG0780041592.01.T01:intron	25.0%
!!!	TCATTTTGGTATTTAGGTTT+TGG	+	Chr7:92804399-92804418	MsG0780041592.01.T01:intron	25.0%
	AATGAGTAAGTAACTAACAG+AGG	+	Chr7:92802481-92802500	MsG0780041592.01.T01:intron	30.0%
	AGCAAAGTCTGATGAATATT+AGG	-	Chr7:92804559-92804578	None:intergenic	30.0%
	ATACTAACTGCAAATAATGG+TGG	-	Chr7:92803685-92803704	None:intergenic	30.0%
	ATCAGTTTCAAGATCTTCAA+AGG	+	Chr7:92804170-92804189	MsG0780041592.01.T01:CDS	30.0%
	GTTGCATATAGTTAGAGTAA+CGG	+	Chr7:92802518-92802537	MsG0780041592.01.T01:intron	30.0%
	TAAGCTATAATTGCTCAGAA+CGG	-	Chr7:92804652-92804671	None:intergenic	30.0%
	TATGTCACAAACTAAACTGA+TGG	+	Chr7:92804771-92804790	MsG0780041592.01.T01:three_prime_UTR	30.0%
	TGAAGATCTTGAAACTGATT+TGG	-	Chr7:92804169-92804188	None:intergenic	30.0%
	TTGCATATAGTTAGAGTAAC+GGG	+	Chr7:92802519-92802538	MsG0780041592.01.T01:intron	30.0%
	TTTGTAGGTAAGATATGTCA+AGG	-	Chr7:92802905-92802924	None:intergenic	30.0%
!	TTTCTTTTAACCATGATTGG+TGG	-	Chr7:92803714-92803733	None:intergenic	30.0%
!!	ATCTATCTTGGTGTCATTAA+TGG	-	Chr7:92802589-92802608	None:intergenic	30.0%
!!!	CGGTGGAATGTTTTTTATAT+AGG	-	Chr7:92803998-92804017	None:intergenic	30.0%
!!!	TGGTATTTAGGTTTTGGAAT+TGG	+	Chr7:92804405-92804424	MsG0780041592.01.T01:intron	30.0%
	AAACACATTGTCATTGCATG+TGG	-	Chr7:92802624-92802643	None:intergenic	35.0%
	AACACATTGTCATTGCATGT+GGG	-	Chr7:92802623-92802642	None:intergenic	35.0%
	AATAGATTTGAGGGCTCAAT+CGG	-	Chr7:92804018-92804037	None:intergenic	35.0%
	AGAAAGCGAGAATAGATTTG+AGG	-	Chr7:92804028-92804047	None:intergenic	35.0%
	AGTGAGAATTGCTTACAGTT+TGG	-	Chr7:92802392-92802411	None:intergenic	35.0%
	ATCAGAAAAATGAGTTCCAC+TGG	+	Chr7:92804108-92804127	MsG0780041592.01.T01:CDS	35.0%
	ATCTGCTTCTCAAGAATTCT+AGG	+	Chr7:92804615-92804634	MsG0780041592.01.T01:CDS	35.0%
	CATTAATGGCCCAGATATAA+TGG	-	Chr7:92802575-92802594	None:intergenic	35.0%
	GAAAGCGAGAATAGATTTGA+GGG	-	Chr7:92804027-92804046	None:intergenic	35.0%
	GCAATGACAATGTGTTTGTA+TGG	+	Chr7:92802627-92802646	MsG0780041592.01.T01:intron	35.0%
	GTGAAAGGGAAATTGAAGAA+AGG	-	Chr7:92804326-92804345	None:intergenic	35.0%
	TAAAACACCACCATTAGCAA+TGG	-	Chr7:92804536-92804555	None:intergenic	35.0%
	TCTGCTTCTCAAGAATTCTA+GGG	+	Chr7:92804616-92804635	MsG0780041592.01.T01:CDS	35.0%
	TGTGGAAAATGCAAATGACA+TGG	+	Chr7:92803860-92803879	MsG0780041592.01.T01:intron	35.0%
	TTATGCTATGGTTGTGTGAA+AGG	-	Chr7:92802986-92803005	None:intergenic	35.0%
	TTTGTATGGCCCAGATTTAA+TGG	+	Chr7:92802641-92802660	MsG0780041592.01.T01:intron	35.0%
!!!	ATTTAGGTTTTGGAATTGGC+TGG	+	Chr7:92804409-92804428	MsG0780041592.01.T01:intron	35.0%
!!!	TTTAGGTTTTGGAATTGGCT+GGG	+	Chr7:92804410-92804429	MsG0780041592.01.T01:intron	35.0%
	AAAATGCAAATGACATGGCG+CGG	+	Chr7:92803865-92803884	MsG0780041592.01.T01:intron	40.0%
	AACTAACAGAGGATGTGACA+AGG	+	Chr7:92802492-92802511	MsG0780041592.01.T01:intron	40.0%
	ACCAAGATAGATGTGTTGTG+TGG	+	Chr7:92802597-92802616	MsG0780041592.01.T01:intron	40.0%
	ACCTGAAGGGTAATATGTAC+AGG	+	Chr7:92803097-92803116	MsG0780041592.01.T01:intron	40.0%
	ACCTGTACATATTACCCTTC+AGG	-	Chr7:92803101-92803120	None:intergenic	40.0%
	ACTTTGCTACCTAAGAAGGT+TGG	+	Chr7:92804571-92804590	MsG0780041592.01.T01:CDS	40.0%
	AGAAGAACCGTATTGTACCA+AGG	+	Chr7:92804452-92804471	MsG0780041592.01.T01:CDS	40.0%
	CTACCTAAGAAGGTTGGAAA+GGG	+	Chr7:92804577-92804596	MsG0780041592.01.T01:CDS	40.0%
	GAATGTGCCTTGGTACAATA+CGG	-	Chr7:92804462-92804481	None:intergenic	40.0%
	GGTCTTTGTACTCAATGATG+CGG	+	Chr7:92803118-92803137	MsG0780041592.01.T01:intron	40.0%
	GTTTCAAGATCTTCAAAGGC+AGG	+	Chr7:92804174-92804193	MsG0780041592.01.T01:CDS	40.0%
	TCAGACTTTGCTACCTAAGA+AGG	+	Chr7:92804567-92804586	MsG0780041592.01.T01:CDS	40.0%
	TTGGTCAATAGAGTAAGGCA+CGG	-	Chr7:92803956-92803975	None:intergenic	40.0%
!	AAGAACTCAGCAAGCTTTTG+GGG	+	Chr7:92804503-92804522	MsG0780041592.01.T01:CDS	40.0%
!	CTTTTAACCATGATTGGTGG+TGG	-	Chr7:92803711-92803730	None:intergenic	40.0%
!	GAAGAACTCAGCAAGCTTTT+GGG	+	Chr7:92804502-92804521	MsG0780041592.01.T01:CDS	40.0%
!	GCTGATTGGTCAATAGAGTA+AGG	-	Chr7:92803961-92803980	None:intergenic	40.0%
!	TGAAGAACTCAGCAAGCTTT+TGG	+	Chr7:92804501-92804520	MsG0780041592.01.T01:CDS	40.0%
	AAATGCAAATGACATGGCGC+GGG	+	Chr7:92803866-92803885	MsG0780041592.01.T01:intron	45.0%
	AACACGTTCGGCGTATTTAC+CGG	-	Chr7:92804241-92804260	None:intergenic	45.0%
	AACAGAGGATGTGACAAGGT+TGG	+	Chr7:92802496-92802515	MsG0780041592.01.T01:intron	45.0%
	AAGAAGGTTGGAAAGGGCAA+AGG	+	Chr7:92804583-92804602	MsG0780041592.01.T01:CDS	45.0%
	AAGAATCGCGAGATTCCTCA+AGG	+	Chr7:92804215-92804234	MsG0780041592.01.T01:CDS	45.0%
	ACTGTGACCATTGCTAATGG+TGG	+	Chr7:92804526-92804545	MsG0780041592.01.T01:CDS	45.0%
	AGTTCCACTGGCACAACTAA+GGG	+	Chr7:92804120-92804139	MsG0780041592.01.T01:CDS	45.0%
	ATGGCCCAGATATAATGGCA+CGG	-	Chr7:92802570-92802589	None:intergenic	45.0%
	ATGGCCCAGATTTAATGGCA+CGG	+	Chr7:92802646-92802665	MsG0780041592.01.T01:intron	45.0%
	GCCACACAACACATCTATCT+TGG	-	Chr7:92802601-92802620	None:intergenic	45.0%
	GCTACCTAAGAAGGTTGGAA+AGG	+	Chr7:92804576-92804595	MsG0780041592.01.T01:CDS	45.0%
	GGAAAGGGCAAAGGAGAAAT+TGG	+	Chr7:92804592-92804611	MsG0780041592.01.T01:CDS	45.0%
	GTATTCTCCACCACCAATCA+TGG	+	Chr7:92803701-92803720	MsG0780041592.01.T01:intron	45.0%
	TAACTCCAAATGGTGTGTGC+TGG	-	Chr7:92802776-92802795	None:intergenic	45.0%
	TTGCCCTTTCCAACCTTCTT+AGG	-	Chr7:92804583-92804602	None:intergenic	45.0%
!	AATAATGGTGGAGAGAGAGG+AGG	-	Chr7:92803673-92803692	None:intergenic	45.0%
!	GCAAATAATGGTGGAGAGAG+AGG	-	Chr7:92803676-92803695	None:intergenic	45.0%
!!	CAGCACTTTGGTGCCATTAA+TGG	+	Chr7:92802542-92802561	MsG0780041592.01.T01:intron	45.0%
!!	GAAACTGATTTGGCAGCCTT+TGG	-	Chr7:92804159-92804178	None:intergenic	45.0%
!!	TAATGGCACGGTGCCATTAA+TGG	-	Chr7:92802677-92802658	None:intergenic	45.0%
!!!	TTGTTTTATTTTAAAATAAT+TGG	+	Chr7:92803617-92803636	MsG0780041592.01.T01:intron	5.0%
	AATCTCGCGATTCTTCCGAC+GGG	-	Chr7:92804210-92804229	None:intergenic	50.0%
	AATGCAAATGACATGGCGCG+GGG	+	Chr7:92803867-92803886	MsG0780041592.01.T01:intron	50.0%
	ACAGCAAGCTGAATGTGCCT+TGG	-	Chr7:92804472-92804491	None:intergenic	50.0%
	ACCAATCAGCGCAGAGGATA+GGG	+	Chr7:92803971-92803990	MsG0780041592.01.T01:intron	50.0%
	AGATTTGAGGGCTCAATCGG+TGG	-	Chr7:92804015-92804034	None:intergenic	50.0%
	AGCAGCGAGATACTCAAGGA+CGG	-	Chr7:92804292-92804311	None:intergenic	50.0%
	CTATTGACCAATCAGCGCAG+AGG	+	Chr7:92803965-92803984	MsG0780041592.01.T01:intron	50.0%
	CTGTTCCAGCACACACCATT+TGG	+	Chr7:92802768-92802787	MsG0780041592.01.T01:intron	50.0%
	GAATCTCGCGATTCTTCCGA+CGG	-	Chr7:92804211-92804230	None:intergenic	50.0%
	GAGTTCCACTGGCACAACTA+AGG	+	Chr7:92804119-92804138	MsG0780041592.01.T01:CDS	50.0%
	GCAGGTCTTCAATTTCCCGT+CGG	+	Chr7:92804192-92804211	MsG0780041592.01.T01:CDS	50.0%
	GGGACTGTGACCATTGCTAA+TGG	+	Chr7:92804523-92804542	MsG0780041592.01.T01:CDS	50.0%
	GGTAAATACGCCGAACGTGT+TGG	+	Chr7:92804240-92804259	MsG0780041592.01.T01:CDS	50.0%
!	GGCACCGTGCCATTAAATCT+GGG	-	Chr7:92802653-92802672	None:intergenic	50.0%
!	GGCACCGTGCCATTATATCT+GGG	+	Chr7:92802563-92802582	MsG0780041592.01.T01:intron	50.0%
!	TGGCACCGTGCCATTAAATC+TGG	-	Chr7:92802654-92802673	None:intergenic	50.0%
!	TGGCACCGTGCCATTATATC+TGG	+	Chr7:92802562-92802581	MsG0780041592.01.T01:intron	50.0%
!!	GGCACATTCAGCTTGCTGTT+AGG	+	Chr7:92804473-92804492	MsG0780041592.01.T01:CDS	50.0%
!!	TAGAGTAACGGGCAGCACTT+TGG	+	Chr7:92802530-92802549	MsG0780041592.01.T01:intron	50.0%
	AATTGGCTGGGAACGCTGCA+AGG	+	Chr7:92804422-92804441	MsG0780041592.01.T01:CDS	55.0%
	AGCGAGATACTCAAGGACGG+CGG	-	Chr7:92804289-92804308	None:intergenic	55.0%
	ATCGCGAGATTCCTCAAGGC+CGG	+	Chr7:92804219-92804238	MsG0780041592.01.T01:CDS	55.0%
	ATGCAAATGACATGGCGCGG+GGG	+	Chr7:92803868-92803887	MsG0780041592.01.T01:intron	55.0%
	ATTGGCTGGGAACGCTGCAA+GGG	+	Chr7:92804423-92804442	MsG0780041592.01.T01:CDS	55.0%
	CCTCAGCAGCGAGATACTCA+AGG	-	Chr7:92804296-92804315	None:intergenic	55.0%
	CCTTGAGTATCTCGCTGCTG+AGG	+	Chr7:92804293-92804312	MsG0780041592.01.T01:CDS	55.0%
	GACCAATCAGCGCAGAGGAT+AGG	+	Chr7:92803970-92803989	MsG0780041592.01.T01:intron	55.0%
	TCCACTGGCACAACTAAGGG+CGG	+	Chr7:92804123-92804142	MsG0780041592.01.T01:CDS	55.0%
	TCTGAGTGAGAATGCCACGC+TGG	+	Chr7:92803926-92803945	MsG0780041592.01.T01:intron	55.0%
	TGGCACAACTAAGGGCGGAA+GGG	+	Chr7:92804128-92804147	MsG0780041592.01.T01:CDS	55.0%
!	ACCCTATCCTCTGCGCTGAT+TGG	-	Chr7:92803975-92803994	None:intergenic	55.0%
	CGGCGTATTTACCGGCCTTG+AGG	-	Chr7:92804233-92804252	None:intergenic	60.0%
	CTGGCACAACTAAGGGCGGA+AGG	+	Chr7:92804127-92804146	MsG0780041592.01.T01:CDS	60.0%
	GATACTCAAGGACGGCGGAG+AGG	-	Chr7:92804284-92804303	None:intergenic	60.0%
	GGCACAACTAAGGGCGGAAG+GGG	+	Chr7:92804129-92804148	MsG0780041592.01.T01:CDS	60.0%
	TCCGCCCTTAGTTGTGCCAG+TGG	-	Chr7:92804127-92804146	None:intergenic	60.0%
!	GGAGAGGTAGACAGGAGCAC+CGG	-	Chr7:92804268-92804287	None:intergenic	60.0%
!	TACGCCGAACGTGTTGGTGC+CGG	+	Chr7:92804246-92804265	MsG0780041592.01.T01:CDS	60.0%
!!	AGCACCGGCACCAACACGTT+CGG	-	Chr7:92804253-92804272	None:intergenic	60.0%
	AGGACGGCGGAGAGGTAGAC+AGG	-	Chr7:92804276-92804295	None:intergenic	65.0%
	CAAATGACATGGCGCGGGGG+TGG	+	Chr7:92803871-92803890	MsG0780041592.01.T01:intron	65.0%
	GGGCGGAAGGGGTAAGCCAA+AGG	+	Chr7:92804140-92804159	MsG0780041592.01.T01:CDS	65.0%
	TAAGGCACGGATCGCCAGCG+TGG	-	Chr7:92803943-92803962	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	92802378	92804838	92802378	ID=MsG0780041592.01;Name=MsG0780041592.01
Chr7	mRNA	92802378	92804838	92802378	ID=MsG0780041592.01.T01;Parent=MsG0780041592.01;Name=MsG0780041592.01.T01;_AED=0.34;_eAED=0.39;_QI=0\|0.5\|0.44\|1\|0.12\|0.11\|9\|202\|154
Chr7	exon	92802378	92802395	92802378	ID=MsG0780041592.01.T01:exon:21995;Parent=MsG0780041592.01.T01
Chr7	exon	92804090	92804314	92804090	ID=MsG0780041592.01.T01:exon:21996;Parent=MsG0780041592.01.T01
Chr7	exon	92804415	92804838	92804415	ID=MsG0780041592.01.T01:exon:21997;Parent=MsG0780041592.01.T01
Chr7	CDS	92802378	92802395	92802378	ID=MsG0780041592.01.T01:cds;Parent=MsG0780041592.01.T01
Chr7	CDS	92804090	92804314	92804090	ID=MsG0780041592.01.T01:cds;Parent=MsG0780041592.01.T01
Chr7	CDS	92804415	92804636	92804415	ID=MsG0780041592.01.T01:cds;Parent=MsG0780041592.01.T01
Chr7	three_prime_UTR	92804637	92804838	92804637	ID=MsG0780041592.01.T01:three_prime_utr;Parent=MsG0780041592.01.T01

Gene Sequence

>MsG0780041592.01.T01

ATGGTTGAAAGCCAAACTGTTTTCGATTTCTTCTCGATCAGAAAAATGAGTTCCACTGGCACAACTAAGGGCGGAAGGGGTAAGCCAAAGGCTGCCAAATCAGTTTCAAGATCTTCAAAGGCAGGTCTTCAATTTCCCGTCGGAAGAATCGCGAGATTCCTCAAGGCCGGTAAATACGCCGAACGTGTTGGTGCCGGTGCTCCTGTCTACCTCTCCGCCGTCCTTGAGTATCTCGCTGCTGAGGTTTTGGAATTGGCTGGGAACGCTGCAAGGGACAACAAGAAGAACCGTATTGTACCAAGGCACATTCAGCTTGCTGTTAGGAACGATGAAGAACTCAGCAAGCTTTTGGGGACTGTGACCATTGCTAATGGTGGTGTTTTACCTAATATTCATCAGACTTTGCTACCTAAGAAGGTTGGAAAGGGCAAAGGAGAAATTGGATCTGCTTCTCAAGAATTCTAG

Protein sequence

>MsG0780041592.01.T01

MVESQTVFDFFSIRKMSSTGTTKGGRGKPKAAKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQTLLPKKVGKGKGEIGSASQEF*