Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010644.01.T01 | XP_003597072.1 | 95.595 | 227 | 6 | 2 | 52 | 277 | 1 | 224 | 1.58E-154 | 440 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010644.01.T01 | Q8VYN9 | 67.836 | 171 | 49 | 3 | 73 | 242 | 45 | 210 | 4.25E-65 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010644.01.T01 | G7IRL4 | 95.595 | 227 | 6 | 2 | 52 | 277 | 1 | 224 | 7.53e-155 | 440 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180005127.01 | MsG0280010644.01 | 0.810634 | 1.045459e-50 | 6.334925e-48 |
| MsG0180005146.01 | MsG0280010644.01 | 0.805661 | 1.198845e-49 | 6.378962e-47 |
| MsG0180005463.01 | MsG0280010644.01 | 0.817940 | 2.540640e-52 | 1.875839e-49 |
| MsG0280010644.01 | MsG0280011271.01 | 0.818928 | 1.517232e-52 | 1.151342e-49 |
| MsG0280010644.01 | MsG0380016458.01 | 0.809274 | 2.051687e-50 | 1.199360e-47 |
| MsG0280010644.01 | MsG0380017427.01 | -0.804761 | 1.849934e-49 | 9.618477e-47 |
| MsG0280010644.01 | MsG0480021213.01 | -0.801050 | 1.080809e-48 | 5.111633e-46 |
| MsG0280010644.01 | MsG0780040826.01 | 0.857338 | 1.747774e-62 | 4.299255e-59 |
| MsG0280010644.01 | MsG0780041226.01 | 0.824030 | 1.006471e-53 | 8.811642e-51 |
| MsG0280010644.01 | MsG0880045942.01 | 0.807210 | 5.649892e-50 | 3.128328e-47 |
| MsG0280010644.01 | MsG0880046267.01 | -0.808938 | 2.421823e-50 | 1.402967e-47 |
| MsG0280010644.01 | MsG0880047656.01 | -0.812586 | 3.934914e-51 | 2.511692e-48 |
| MsG0280008452.01 | MsG0280010644.01 | 0.820092 | 8.234711e-53 | 6.454212e-50 |
| MsG0280009445.01 | MsG0280010644.01 | -0.808128 | 3.606004e-50 | 2.045093e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010644.01.T01 | MTR_2g089350 | 95.595 | 227 | 6 | 2 | 52 | 277 | 1 | 224 | 1.91e-158 | 440 |
| MsG0280010644.01.T01 | MTR_1717s0010 | 58.929 | 224 | 77 | 4 | 57 | 266 | 23 | 245 | 5.26e-75 | 229 |
| MsG0280010644.01.T01 | MTR_1527s0010 | 58.929 | 224 | 77 | 4 | 57 | 266 | 23 | 245 | 5.26e-75 | 229 |
| MsG0280010644.01.T01 | MTR_2g081250 | 41.333 | 150 | 64 | 4 | 55 | 204 | 3 | 128 | 4.59e-31 | 113 |
| MsG0280010644.01.T01 | MTR_1g087200 | 32.164 | 171 | 89 | 7 | 76 | 237 | 6 | 158 | 2.23e-20 | 85.9 |
| MsG0280010644.01.T01 | MTR_1g083950 | 30.000 | 170 | 102 | 5 | 76 | 243 | 9 | 163 | 2.71e-19 | 83.2 |
| MsG0280010644.01.T01 | MTR_5g065980 | 35.028 | 177 | 92 | 8 | 72 | 235 | 4 | 170 | 1.70e-18 | 81.3 |
| MsG0280010644.01.T01 | MTR_5g065980 | 35.028 | 177 | 90 | 8 | 72 | 235 | 4 | 168 | 3.65e-18 | 80.5 |
| MsG0280010644.01.T01 | MTR_1g088640 | 29.012 | 162 | 96 | 3 | 80 | 238 | 16 | 161 | 6.13e-17 | 76.6 |
| MsG0280010644.01.T01 | MTR_1g054765 | 30.387 | 181 | 96 | 6 | 77 | 239 | 4 | 172 | 7.43e-17 | 77.0 |
| MsG0280010644.01.T01 | MTR_2g034200 | 29.697 | 165 | 105 | 3 | 73 | 235 | 2 | 157 | 3.36e-16 | 74.7 |
| MsG0280010644.01.T01 | MTR_1g054750 | 30.857 | 175 | 97 | 5 | 77 | 239 | 23 | 185 | 3.75e-16 | 75.5 |
| MsG0280010644.01.T01 | MTR_1g088640 | 29.630 | 162 | 98 | 3 | 80 | 238 | 16 | 164 | 1.65e-15 | 72.8 |
| MsG0280010644.01.T01 | MTR_4g064933 | 30.120 | 166 | 103 | 4 | 73 | 235 | 2 | 157 | 7.75e-15 | 71.2 |
| MsG0280010644.01.T01 | MTR_7g065770 | 27.160 | 162 | 107 | 3 | 76 | 235 | 5 | 157 | 2.38e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010644.01.T01 | AT1G11360 | 59.259 | 243 | 77 | 7 | 44 | 276 | 12 | 242 | 2.15e-90 | 268 |
| MsG0280010644.01.T01 | AT1G11360 | 59.259 | 243 | 77 | 7 | 44 | 276 | 12 | 242 | 2.15e-90 | 268 |
| MsG0280010644.01.T01 | AT1G11360 | 59.259 | 243 | 77 | 7 | 44 | 276 | 12 | 242 | 2.15e-90 | 268 |
| MsG0280010644.01.T01 | AT1G11360 | 59.259 | 243 | 77 | 7 | 44 | 276 | 12 | 242 | 2.15e-90 | 268 |
| MsG0280010644.01.T01 | AT5G54430 | 67.836 | 171 | 49 | 3 | 73 | 242 | 45 | 210 | 4.33e-66 | 206 |
| MsG0280010644.01.T01 | AT5G54430 | 67.836 | 171 | 49 | 3 | 73 | 242 | 45 | 210 | 4.33e-66 | 206 |
| MsG0280010644.01.T01 | AT5G54430 | 67.836 | 171 | 49 | 3 | 73 | 242 | 45 | 210 | 6.06e-66 | 206 |
| MsG0280010644.01.T01 | AT5G54430 | 67.836 | 171 | 49 | 3 | 73 | 242 | 45 | 210 | 6.06e-66 | 206 |
| MsG0280010644.01.T01 | AT5G54430 | 67.836 | 171 | 49 | 3 | 73 | 242 | 45 | 210 | 7.83e-66 | 206 |
| MsG0280010644.01.T01 | AT5G54430 | 67.836 | 171 | 49 | 3 | 73 | 242 | 45 | 210 | 7.83e-66 | 206 |
| MsG0280010644.01.T01 | AT4G27320 | 64.912 | 171 | 60 | 0 | 72 | 242 | 41 | 211 | 1.06e-64 | 204 |
| MsG0280010644.01.T01 | AT4G27320 | 64.912 | 171 | 60 | 0 | 72 | 242 | 41 | 211 | 1.16e-64 | 203 |
| MsG0280010644.01.T01 | AT3G21210 | 46.766 | 201 | 64 | 7 | 58 | 255 | 2 | 162 | 4.91e-34 | 131 |
| MsG0280010644.01.T01 | AT3G58450 | 34.286 | 175 | 90 | 6 | 78 | 240 | 32 | 193 | 3.67e-19 | 84.0 |
| MsG0280010644.01.T01 | AT1G09740 | 34.270 | 178 | 100 | 6 | 72 | 242 | 4 | 171 | 5.58e-18 | 79.7 |
| MsG0280010644.01.T01 | AT1G09740 | 34.270 | 178 | 100 | 6 | 72 | 242 | 4 | 171 | 5.58e-18 | 79.7 |
| MsG0280010644.01.T01 | AT3G58450 | 33.143 | 175 | 85 | 6 | 78 | 240 | 32 | 186 | 8.02e-18 | 80.1 |
| MsG0280010644.01.T01 | AT3G03270 | 33.728 | 169 | 93 | 4 | 73 | 235 | 2 | 157 | 1.26e-17 | 78.6 |
| MsG0280010644.01.T01 | AT3G11930 | 27.551 | 196 | 118 | 6 | 56 | 239 | 13 | 196 | 2.33e-17 | 79.0 |
| MsG0280010644.01.T01 | AT3G11930 | 26.667 | 195 | 123 | 5 | 56 | 239 | 13 | 198 | 5.20e-17 | 77.8 |
| MsG0280010644.01.T01 | AT3G11930 | 28.283 | 198 | 115 | 8 | 56 | 239 | 13 | 197 | 7.96e-17 | 77.4 |
| MsG0280010644.01.T01 | AT3G17020 | 28.834 | 163 | 104 | 3 | 76 | 235 | 7 | 160 | 8.11e-17 | 76.6 |
| MsG0280010644.01.T01 | AT3G53990 | 29.697 | 165 | 99 | 5 | 76 | 235 | 5 | 157 | 2.36e-14 | 69.7 |
| MsG0280010644.01.T01 | AT3G62550 | 32.143 | 168 | 90 | 6 | 75 | 235 | 6 | 156 | 2.86e-14 | 69.3 |
| MsG0280010644.01.T01 | AT3G11930 | 25.792 | 221 | 117 | 8 | 56 | 239 | 13 | 223 | 1.36e-13 | 68.9 |
| MsG0280010644.01.T01 | AT2G47710 | 26.667 | 165 | 98 | 5 | 80 | 238 | 12 | 159 | 7.19e-12 | 62.8 |
| MsG0280010644.01.T01 | AT3G03270 | 31.944 | 144 | 82 | 3 | 73 | 210 | 2 | 135 | 1.97e-11 | 62.4 |
| MsG0280010644.01.T01 | AT1G68300 | 28.743 | 167 | 93 | 7 | 76 | 235 | 10 | 157 | 4.74e-11 | 60.5 |
Find 88 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAATCTTTCTTTCTTTCT+TGG | 0.165673 | 2:+72767912 | None:intergenic |
| GTCTTGATGTTGTTGAATTT+TGG | 0.195981 | 2:+72767934 | None:intergenic |
| TGGATTGAGTGCTGTGATTA+TGG | 0.202284 | 2:-72767372 | MsG0280010644.01.T01:CDS |
| ACCGTCGGCGGTGGCGGCGG+TGG | 0.208659 | 2:+72767568 | None:intergenic |
| CGTCGGCGGTGGCGGCGGTG+GGG | 0.235216 | 2:+72767570 | None:intergenic |
| GTCGGCGGTGGCGGCGGTGG+GGG | 0.286804 | 2:+72767571 | None:intergenic |
| CCGTCGGCGGTGGCGGCGGT+GGG | 0.293253 | 2:+72767569 | None:intergenic |
| AAGTTGCGAAGATTAATATT+TGG | 0.322715 | 2:+72767857 | None:intergenic |
| CGTTCTCTACGGCGCCGATT+GGG | 0.323896 | 2:-72767606 | MsG0280010644.01.T01:CDS |
| CCGTTCTCTACGGCGCCGAT+TGG | 0.330764 | 2:-72767607 | MsG0280010644.01.T01:CDS |
| TCATGTTCTTCCTCAATAAC+AGG | 0.333897 | 2:+72767176 | None:intergenic |
| TCGAGCCGGGTGATCCGGTT+CGG | 0.366540 | 2:+72767772 | None:intergenic |
| TTTGTCCTGTTGTTGTTGTA+AGG | 0.379033 | 2:-72767268 | MsG0280010644.01.T01:CDS |
| ATCGCCACCGTCGGCGGTGG+CGG | 0.381717 | 2:+72767562 | None:intergenic |
| GGATTGAGTGCTGTGATTAT+GGG | 0.392819 | 2:-72767371 | MsG0280010644.01.T01:CDS |
| GCCACCGTCGGCGGTGGCGG+CGG | 0.401210 | 2:+72767565 | None:intergenic |
| ATTCATGTTGGAGAAAATTA+CGG | 0.409949 | 2:+72767814 | None:intergenic |
| TATGAAGGAAAGATTGTGTT+TGG | 0.411316 | 2:-72767408 | MsG0280010644.01.T01:CDS |
| TTCACAATGTGAATCTTAAA+CGG | 0.413061 | 2:+72767440 | None:intergenic |
| GGCGGTGGCGCCGGAGTTGA+AGG | 0.418319 | 2:-72767227 | MsG0280010644.01.T01:CDS |
| GAGAATCGAGCCGGGTGATC+CGG | 0.418386 | 2:+72767767 | None:intergenic |
| CGAGCCGGGTGATCCGGTTC+GGG | 0.434205 | 2:+72767773 | None:intergenic |
| ACCATCATTCCCTTCAACTC+CGG | 0.437183 | 2:+72767217 | None:intergenic |
| CCCACCGCCGCCACCGCCGA+CGG | 0.446499 | 2:-72767569 | MsG0280010644.01.T01:CDS |
| GGAGGGGACGGAACCCCAAT+CGG | 0.448915 | 2:+72767592 | None:intergenic |
| TGCGACTTTGCGGTGTGAAC+CGG | 0.449024 | 2:+72767736 | None:intergenic |
| ACCGCCGCCACCGCCGACGG+TGG | 0.455733 | 2:-72767566 | MsG0280010644.01.T01:CDS |
| GCGACGAAGAGAAGTTCTAA+TGG | 0.460127 | 2:-72767332 | MsG0280010644.01.T01:CDS |
| TGTTGTTGTTGTAAGGTATC+CGG | 0.464214 | 2:-72767261 | MsG0280010644.01.T01:CDS |
| CACCAATGGTTGTGCAAGAT+CGG | 0.464706 | 2:+72767475 | None:intergenic |
| GAGAGTGATGGCGGTGGCGC+CGG | 0.471955 | 2:-72767236 | MsG0280010644.01.T01:CDS |
| GGATACCTTACAACAACAAC+AGG | 0.473220 | 2:+72767263 | None:intergenic |
| AGAAGTTCTAATGGGAAGCT+TGG | 0.473262 | 2:-72767323 | MsG0280010644.01.T01:CDS |
| ATCACCGGTTCGGCCCGAAC+CGG | 0.473685 | 2:-72767786 | MsG0280010644.01.T01:CDS |
| TGATCCGGTTCGGGCCGAAC+CGG | 0.474957 | 2:+72767782 | None:intergenic |
| GGCATCGCCACCGTCGGCGG+TGG | 0.483223 | 2:+72767559 | None:intergenic |
| GTAACGGATCAAAGAGTTTG+AGG | 0.483366 | 2:+72767891 | None:intergenic |
| TGAACTTCATCCTGTTATTG+AGG | 0.483983 | 2:-72767186 | MsG0280010644.01.T01:CDS |
| CAACGGCGATTGCGACTTTG+CGG | 0.486543 | 2:+72767726 | None:intergenic |
| ATTATGGGAAGCCGTGGATT+CGG | 0.487024 | 2:-72767356 | MsG0280010644.01.T01:CDS |
| TGTGAAAGATCATGATATGA+AGG | 0.493312 | 2:-72767423 | MsG0280010644.01.T01:CDS |
| AGGAGGATGACGGTGTCGCC+TGG | 0.496895 | 2:+72767647 | None:intergenic |
| CGACGAAGAGAAGTTCTAAT+GGG | 0.501552 | 2:-72767331 | MsG0280010644.01.T01:CDS |
| CGATCTTGCACAACCATTGG+TGG | 0.502670 | 2:-72767474 | MsG0280010644.01.T01:CDS |
| AAAGCGCCTACGCCGTCCGA+TGG | 0.507961 | 2:-72767691 | MsG0280010644.01.T01:CDS |
| TCGGGCCGAACCGGTGATTG+TGG | 0.519250 | 2:+72767791 | None:intergenic |
| GCTCGATTCTCTCTCCCATC+CGG | 0.521090 | 2:-72767755 | MsG0280010644.01.T01:CDS |
| AACCGATCTTGCACAACCAT+TGG | 0.523574 | 2:-72767477 | MsG0280010644.01.T01:CDS |
| TGAATCCACAATCACCGGTT+CGG | 0.526182 | 2:-72767796 | MsG0280010644.01.T01:CDS |
| GGAGTTTCTGATTCCACCAA+TGG | 0.528495 | 2:+72767461 | None:intergenic |
| GCGCCGTAGAGAACGGAAGT+TGG | 0.529716 | 2:+72767614 | None:intergenic |
| AAGTTGGACGGACGTGGAGG+AGG | 0.532912 | 2:+72767630 | None:intergenic |
| GATTGTGTTTGGAAGTTGAA+CGG | 0.542960 | 2:-72767397 | MsG0280010644.01.T01:CDS |
| CTCGGAGGCATCGCCACCGT+CGG | 0.543219 | 2:+72767553 | None:intergenic |
| TCGGCCCGAACCGGATCACC+CGG | 0.544498 | 2:-72767777 | MsG0280010644.01.T01:CDS |
| GTTCTCTACGGCGCCGATTG+GGG | 0.546679 | 2:-72767605 | MsG0280010644.01.T01:CDS |
| CCACCGCCATCACTCTCCTC+CGG | 0.553044 | 2:+72767242 | None:intergenic |
| CGTCCAACTTCCGTTCTCTA+CGG | 0.556201 | 2:-72767617 | MsG0280010644.01.T01:CDS |
| GAACGGAAGTTGGACGGACG+TGG | 0.556761 | 2:+72767624 | None:intergenic |
| AAGCGCCTACGCCGTCCGAT+GGG | 0.559124 | 2:-72767690 | MsG0280010644.01.T01:CDS |
| CCAATCGGCGCCGTAGAGAA+CGG | 0.564627 | 2:+72767607 | None:intergenic |
| CAACATGAATCCACAATCAC+CGG | 0.570327 | 2:-72767801 | MsG0280010644.01.T01:CDS |
| TTTGGAGTTTGATTCAGTAA+CGG | 0.572913 | 2:+72767875 | None:intergenic |
| GATGGGAGAGAGAATCGAGC+CGG | 0.579454 | 2:+72767758 | None:intergenic |
| ATGGGAGAGAGAATCGAGCC+GGG | 0.583700 | 2:+72767759 | None:intergenic |
| CTTTGCGGTGTGAACCGGAT+GGG | 0.583999 | 2:+72767741 | None:intergenic |
| TCTTCGTCGCACCGAATCCA+CGG | 0.588772 | 2:+72767345 | None:intergenic |
| AACTGCCCATCGGACGGCGT+AGG | 0.589727 | 2:+72767685 | None:intergenic |
| CGTAGAGAACGGAAGTTGGA+CGG | 0.593295 | 2:+72767618 | None:intergenic |
| GGAGGCATCGCCACCGTCGG+CGG | 0.602626 | 2:+72767556 | None:intergenic |
| CGGTGATTGTGGATTCATGT+TGG | 0.604905 | 2:+72767802 | None:intergenic |
| TGTTTGGAAGTTGAACGGCT+TGG | 0.605669 | 2:-72767392 | MsG0280010644.01.T01:CDS |
| GGATGACGGTGTCGCCTGGT+CGG | 0.607279 | 2:+72767651 | None:intergenic |
| TATTGAGGAAGAACATGAAG+AGG | 0.612634 | 2:-72767171 | MsG0280010644.01.T01:CDS |
| CCGGAGGAGAGTGATGGCGG+TGG | 0.619622 | 2:-72767242 | MsG0280010644.01.T01:CDS |
| ACTTTGCGGTGTGAACCGGA+TGG | 0.620134 | 2:+72767740 | None:intergenic |
| GCTTTCGTCGCTGAGATCAA+CGG | 0.620909 | 2:+72767709 | None:intergenic |
| AGGTATCCGGAGGAGAGTGA+TGG | 0.623434 | 2:-72767248 | MsG0280010644.01.T01:CDS |
| GTTCAAAATTATCTCCGACC+AGG | 0.624222 | 2:-72767665 | MsG0280010644.01.T01:CDS |
| GCCGGAGTTGAAGGGAATGA+TGG | 0.624545 | 2:-72767218 | MsG0280010644.01.T01:CDS |
| CGACGGTGGCGATGCCTCCG+AGG | 0.636822 | 2:-72767552 | MsG0280010644.01.T01:CDS |
| GCGGTGGCGCCGGAGTTGAA+GGG | 0.640757 | 2:-72767226 | MsG0280010644.01.T01:CDS |
| TATCCGGAGGAGAGTGATGG+CGG | 0.657096 | 2:-72767245 | MsG0280010644.01.T01:CDS |
| TGTTGTTGTAAGGTATCCGG+AGG | 0.667970 | 2:-72767258 | MsG0280010644.01.T01:CDS |
| CGGAAGTTGGACGGACGTGG+AGG | 0.669422 | 2:+72767627 | None:intergenic |
| ACGGACGTGGAGGAGGATGA+CGG | 0.677052 | 2:+72767637 | None:intergenic |
| GCTGTGATTATGGGAAGCCG+TGG | 0.685112 | 2:-72767362 | MsG0280010644.01.T01:CDS |
| GATGCTGATGATGAACACAA+AGG | 0.760715 | 2:-72767140 | MsG0280010644.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAGTTGCGAAGATTAATATT+TGG | + | Chr2:72767214-72767233 | None:intergenic | 25.0% |
| ! | ATTCATGTTGGAGAAAATTA+CGG | + | Chr2:72767257-72767276 | None:intergenic | 25.0% |
| ! | TTCACAATGTGAATCTTAAA+CGG | + | Chr2:72767631-72767650 | None:intergenic | 25.0% |
| !!! | GTTGAATTTTGGTATTCTTT+CGG | + | Chr2:72767126-72767145 | None:intergenic | 25.0% |
| GGAAATCTTTCTTTCTTTCT+TGG | + | Chr2:72767159-72767178 | None:intergenic | 30.0% | |
| TATGAAGGAAAGATTGTGTT+TGG | - | Chr2:72767660-72767679 | MsG0280010644.01.T01:CDS | 30.0% | |
| TGTGAAAGATCATGATATGA+AGG | - | Chr2:72767645-72767664 | MsG0280010644.01.T01:CDS | 30.0% | |
| ! | GTCTTGATGTTGTTGAATTT+TGG | + | Chr2:72767137-72767156 | None:intergenic | 30.0% |
| ! | TTTGGAGTTTGATTCAGTAA+CGG | + | Chr2:72767196-72767215 | None:intergenic | 30.0% |
| !!! | TGGAGAAAATTACGGTTTTT+TGG | + | Chr2:72767249-72767268 | None:intergenic | 30.0% |
| GATTGTGTTTGGAAGTTGAA+CGG | - | Chr2:72767671-72767690 | MsG0280010644.01.T01:CDS | 35.0% | |
| TATTGAGGAAGAACATGAAG+AGG | - | Chr2:72767897-72767916 | MsG0280010644.01.T01:CDS | 35.0% | |
| TCATGTTCTTCCTCAATAAC+AGG | + | Chr2:72767895-72767914 | None:intergenic | 35.0% | |
| TGAACTTCATCCTGTTATTG+AGG | - | Chr2:72767882-72767901 | MsG0280010644.01.T01:CDS | 35.0% | |
| ! | GATAATTTTGAACTGCCCAT+CGG | + | Chr2:72767396-72767415 | None:intergenic | 35.0% |
| ! | TGTTGTTGTTGTAAGGTATC+CGG | - | Chr2:72767807-72767826 | MsG0280010644.01.T01:CDS | 35.0% |
| ! | TTTGTCCTGTTGTTGTTGTA+AGG | - | Chr2:72767800-72767819 | MsG0280010644.01.T01:CDS | 35.0% |
| !!! | CATTTTTTGACGTGATTCCT+CGG | + | Chr2:72767536-72767555 | None:intergenic | 35.0% |
| CAACATGAATCCACAATCAC+CGG | - | Chr2:72767267-72767286 | MsG0280010644.01.T01:CDS | 40.0% | |
| CGAGGAATCACGTCAAAAAA+TGG | - | Chr2:72767534-72767553 | MsG0280010644.01.T01:CDS | 40.0% | |
| GGATACCTTACAACAACAAC+AGG | + | Chr2:72767808-72767827 | None:intergenic | 40.0% | |
| GTTCAAAATTATCTCCGACC+AGG | - | Chr2:72767403-72767422 | MsG0280010644.01.T01:CDS | 40.0% | |
| ! | AGAAGTTCTAATGGGAAGCT+TGG | - | Chr2:72767745-72767764 | MsG0280010644.01.T01:CDS | 40.0% |
| ! | CGACGAAGAGAAGTTCTAAT+GGG | - | Chr2:72767737-72767756 | MsG0280010644.01.T01:CDS | 40.0% |
| ! | GATGCTGATGATGAACACAA+AGG | - | Chr2:72767928-72767947 | MsG0280010644.01.T01:CDS | 40.0% |
| ! | GGATTGAGTGCTGTGATTAT+GGG | - | Chr2:72767697-72767716 | MsG0280010644.01.T01:CDS | 40.0% |
| ! | TGGATTGAGTGCTGTGATTA+TGG | - | Chr2:72767696-72767715 | MsG0280010644.01.T01:CDS | 40.0% |
| !! | GTAACGGATCAAAGAGTTTG+AGG | + | Chr2:72767180-72767199 | None:intergenic | 40.0% |
| !!! | AAGATCGGTTGCTTTTGTTG+AGG | + | Chr2:72767581-72767600 | None:intergenic | 40.0% |
| AACCGATCTTGCACAACCAT+TGG | - | Chr2:72767591-72767610 | MsG0280010644.01.T01:CDS | 45.0% | |
| ACCATCATTCCCTTCAACTC+CGG | + | Chr2:72767854-72767873 | None:intergenic | 45.0% | |
| ATTATGGGAAGCCGTGGATT+CGG | - | Chr2:72767712-72767731 | MsG0280010644.01.T01:CDS | 45.0% | |
| CACCAATGGTTGTGCAAGAT+CGG | + | Chr2:72767596-72767615 | None:intergenic | 45.0% | |
| CGGTGATTGTGGATTCATGT+TGG | + | Chr2:72767269-72767288 | None:intergenic | 45.0% | |
| GGAGTTTCTGATTCCACCAA+TGG | + | Chr2:72767610-72767629 | None:intergenic | 45.0% | |
| TGTTTGGAAGTTGAACGGCT+TGG | - | Chr2:72767676-72767695 | MsG0280010644.01.T01:CDS | 45.0% | |
| ! | ATTTTGAACTGCCCATCGGA+CGG | + | Chr2:72767392-72767411 | None:intergenic | 45.0% |
| ! | GCGACGAAGAGAAGTTCTAA+TGG | - | Chr2:72767736-72767755 | MsG0280010644.01.T01:CDS | 45.0% |
| ! | TGAATCCACAATCACCGGTT+CGG | - | Chr2:72767272-72767291 | MsG0280010644.01.T01:CDS | 45.0% |
| ! | TGTTGTTGTAAGGTATCCGG+AGG | - | Chr2:72767810-72767829 | MsG0280010644.01.T01:CDS | 45.0% |
| ! | TTTTTGACGTGATTCCTCGG+AGG | + | Chr2:72767533-72767552 | None:intergenic | 45.0% |
| CGATCTTGCACAACCATTGG+TGG | - | Chr2:72767594-72767613 | MsG0280010644.01.T01:CDS | 50.0% | |
| CGTAGAGAACGGAAGTTGGA+CGG | + | Chr2:72767453-72767472 | None:intergenic | 50.0% | |
| CGTCCAACTTCCGTTCTCTA+CGG | - | Chr2:72767451-72767470 | MsG0280010644.01.T01:CDS | 50.0% | |
| GCTTTCGTCGCTGAGATCAA+CGG | + | Chr2:72767362-72767381 | None:intergenic | 50.0% | |
| ACTTTGCGGTGTGAACCGGA+TGG | + | Chr2:72767331-72767350 | None:intergenic | 55.0% | |
| AGGTATCCGGAGGAGAGTGA+TGG | - | Chr2:72767820-72767839 | MsG0280010644.01.T01:CDS | 55.0% | |
| ATGGGAGAGAGAATCGAGCC+GGG | + | Chr2:72767312-72767331 | None:intergenic | 55.0% | |
| CAACGGCGATTGCGACTTTG+CGG | + | Chr2:72767345-72767364 | None:intergenic | 55.0% | |
| CTTTGCGGTGTGAACCGGAT+GGG | + | Chr2:72767330-72767349 | None:intergenic | 55.0% | |
| GATGGGAGAGAGAATCGAGC+CGG | + | Chr2:72767313-72767332 | None:intergenic | 55.0% | |
| GCCGGAGTTGAAGGGAATGA+TGG | - | Chr2:72767850-72767869 | MsG0280010644.01.T01:CDS | 55.0% | |
| GCTCGATTCTCTCTCCCATC+CGG | - | Chr2:72767313-72767332 | MsG0280010644.01.T01:CDS | 55.0% | |
| GCTGTGATTATGGGAAGCCG+TGG | - | Chr2:72767706-72767725 | MsG0280010644.01.T01:CDS | 55.0% | |
| TATCCGGAGGAGAGTGATGG+CGG | - | Chr2:72767823-72767842 | MsG0280010644.01.T01:CDS | 55.0% | |
| TCTTCGTCGCACCGAATCCA+CGG | + | Chr2:72767726-72767745 | None:intergenic | 55.0% | |
| TGCGACTTTGCGGTGTGAAC+CGG | + | Chr2:72767335-72767354 | None:intergenic | 55.0% | |
| AAGTTGGACGGACGTGGAGG+AGG | + | Chr2:72767441-72767460 | None:intergenic | 60.0% | |
| ACGGACGTGGAGGAGGATGA+CGG | + | Chr2:72767434-72767453 | None:intergenic | 60.0% | |
| CCAATCGGCGCCGTAGAGAA+CGG | + | Chr2:72767464-72767483 | None:intergenic | 60.0% | |
| GAACGGAAGTTGGACGGACG+TGG | + | Chr2:72767447-72767466 | None:intergenic | 60.0% | |
| GAGAATCGAGCCGGGTGATC+CGG | + | Chr2:72767304-72767323 | None:intergenic | 60.0% | |
| GCGCCGTAGAGAACGGAAGT+TGG | + | Chr2:72767457-72767476 | None:intergenic | 60.0% | |
| !! | CGTTCTCTACGGCGCCGATT+GGG | - | Chr2:72767462-72767481 | MsG0280010644.01.T01:CDS | 60.0% |
| !! | GTTCTCTACGGCGCCGATTG+GGG | - | Chr2:72767463-72767482 | MsG0280010644.01.T01:CDS | 60.0% |
| AACTGCCCATCGGACGGCGT+AGG | + | Chr2:72767386-72767405 | None:intergenic | 65.0% | |
| AAGCGCCTACGCCGTCCGAT+GGG | - | Chr2:72767378-72767397 | MsG0280010644.01.T01:CDS | 65.0% | |
| CCACCGCCATCACTCTCCTC+CGG | + | Chr2:72767829-72767848 | None:intergenic | 65.0% | |
| CGGAAGTTGGACGGACGTGG+AGG | + | Chr2:72767444-72767463 | None:intergenic | 65.0% | |
| GGAGGGGACGGAACCCCAAT+CGG | + | Chr2:72767479-72767498 | None:intergenic | 65.0% | |
| TCGAGCCGGGTGATCCGGTT+CGG | + | Chr2:72767299-72767318 | None:intergenic | 65.0% | |
| TCGGGCCGAACCGGTGATTG+TGG | + | Chr2:72767280-72767299 | None:intergenic | 65.0% | |
| ! | AAAGCGCCTACGCCGTCCGA+TGG | - | Chr2:72767377-72767396 | MsG0280010644.01.T01:CDS | 65.0% |
| !! | AGGAGGATGACGGTGTCGCC+TGG | + | Chr2:72767424-72767443 | None:intergenic | 65.0% |
| !! | ATCACCGGTTCGGCCCGAAC+CGG | - | Chr2:72767282-72767301 | MsG0280010644.01.T01:CDS | 65.0% |
| !! | CCGTTCTCTACGGCGCCGAT+TGG | - | Chr2:72767461-72767480 | MsG0280010644.01.T01:CDS | 65.0% |
| !! | GGATGACGGTGTCGCCTGGT+CGG | + | Chr2:72767420-72767439 | None:intergenic | 65.0% |
| !! | TGATCCGGTTCGGGCCGAAC+CGG | + | Chr2:72767289-72767308 | None:intergenic | 65.0% |
| CGAGCCGGGTGATCCGGTTC+GGG | + | Chr2:72767298-72767317 | None:intergenic | 70.0% | |
| TCGGCCCGAACCGGATCACC+CGG | - | Chr2:72767291-72767310 | MsG0280010644.01.T01:CDS | 70.0% | |
| ! | GCGGTGGCGCCGGAGTTGAA+GGG | - | Chr2:72767842-72767861 | MsG0280010644.01.T01:CDS | 70.0% |
| !! | CCGGAGGAGAGTGATGGCGG+TGG | - | Chr2:72767826-72767845 | MsG0280010644.01.T01:CDS | 70.0% |
| !! | CTCGGAGGCATCGCCACCGT+CGG | + | Chr2:72767518-72767537 | None:intergenic | 70.0% |
| !! | GAGAGTGATGGCGGTGGCGC+CGG | - | Chr2:72767832-72767851 | MsG0280010644.01.T01:CDS | 70.0% |
| ATCGCCACCGTCGGCGGTGG+CGG | + | Chr2:72767509-72767528 | None:intergenic | 75.0% | |
| CGACGGTGGCGATGCCTCCG+AGG | - | Chr2:72767516-72767535 | MsG0280010644.01.T01:CDS | 75.0% | |
| ! | GGCGGTGGCGCCGGAGTTGA+AGG | - | Chr2:72767841-72767860 | MsG0280010644.01.T01:CDS | 75.0% |
| !! | GGAGGCATCGCCACCGTCGG+CGG | + | Chr2:72767515-72767534 | None:intergenic | 75.0% |
| ! | GGCATCGCCACCGTCGGCGG+TGG | + | Chr2:72767512-72767531 | None:intergenic | 80.0% |
| ! | ACCGCCGCCACCGCCGACGG+TGG | - | Chr2:72767502-72767521 | MsG0280010644.01.T01:CDS | 85.0% |
| ! | CCCACCGCCGCCACCGCCGA+CGG | - | Chr2:72767499-72767518 | MsG0280010644.01.T01:CDS | 85.0% |
| ! | GGCGGCGGTGGGGGAGGGGA+CGG | + | Chr2:72767491-72767510 | None:intergenic | 85.0% |
| !! | ACCGTCGGCGGTGGCGGCGG+TGG | + | Chr2:72767503-72767522 | None:intergenic | 85.0% |
| !! | CCGTCGGCGGTGGCGGCGGT+GGG | + | Chr2:72767502-72767521 | None:intergenic | 85.0% |
| !! | CGGTGGCGGCGGTGGGGGAG+GGG | + | Chr2:72767495-72767514 | None:intergenic | 85.0% |
| !! | CGTCGGCGGTGGCGGCGGTG+GGG | + | Chr2:72767501-72767520 | None:intergenic | 85.0% |
| !! | GCCACCGTCGGCGGTGGCGG+CGG | + | Chr2:72767506-72767525 | None:intergenic | 85.0% |
| !! | GCGGTGGCGGCGGTGGGGGA+GGG | + | Chr2:72767496-72767515 | None:intergenic | 85.0% |
| !! | GTCGGCGGTGGCGGCGGTGG+GGG | + | Chr2:72767500-72767519 | None:intergenic | 85.0% |
| !! | GGCGGTGGCGGCGGTGGGGG+AGG | + | Chr2:72767497-72767516 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 72767118 | 72767972 | 72767118 | ID=MsG0280010644.01;Name=MsG0280010644.01 |
| Chr2 | mRNA | 72767118 | 72767972 | 72767118 | ID=MsG0280010644.01.T01;Parent=MsG0280010644.01;Name=MsG0280010644.01.T01;_AED=0.41;_eAED=0.41;_QI=0|-1|0|1|-1|1|1|0|284 |
| Chr2 | exon | 72767118 | 72767972 | 72767118 | ID=MsG0280010644.01.T01:exon:19601;Parent=MsG0280010644.01.T01 |
| Chr2 | CDS | 72767118 | 72767972 | 72767118 | ID=MsG0280010644.01.T01:cds;Parent=MsG0280010644.01.T01 |
| Gene Sequence |
| Protein sequence |
