Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040826.01.T01 | XP_024626166.1 | 69.463 | 298 | 15 | 4 | 24 | 252 | 188 | 478 | 1.87E-120 | 371 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040826.01.T01 | G7KYK1 | 69.463 | 298 | 15 | 4 | 24 | 252 | 188 | 478 | 8.95e-121 | 371 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048703.01 | MsG0780040826.01 | 0.813081 | 3.065139e-51 | 1.982228e-48 |
| MsG0180000549.01 | MsG0780040826.01 | -0.803546 | 3.310623e-49 | 1.668358e-46 |
| MsG0180001175.01 | MsG0780040826.01 | -0.802046 | 6.754794e-49 | 3.275952e-46 |
| MsG0180002700.01 | MsG0780040826.01 | -0.819327 | 1.230866e-52 | 9.442108e-50 |
| MsG0180003637.01 | MsG0780040826.01 | 0.809993 | 1.437425e-50 | 8.564589e-48 |
| MsG0180003942.01 | MsG0780040826.01 | 0.821190 | 4.606380e-53 | 3.721989e-50 |
| MsG0180005395.01 | MsG0780040826.01 | 0.822652 | 2.112316e-53 | 1.778890e-50 |
| MsG0180005463.01 | MsG0780040826.01 | 0.835112 | 2.027985e-56 | 2.455614e-53 |
| MsG0180005918.01 | MsG0780040826.01 | 0.847269 | 1.286447e-59 | 2.274147e-56 |
| MsG0180005961.01 | MsG0780040826.01 | -0.800209 | 1.604849e-48 | 7.429115e-46 |
| MsG0780040284.01 | MsG0780040826.01 | -0.820594 | 6.315723e-53 | 5.018523e-50 |
| MsG0780040825.01 | MsG0780040826.01 | 0.832963 | 7.001528e-56 | 7.949428e-53 |
| MsG0780040826.01 | MsG0780041569.01 | 0.816837 | 4.500519e-52 | 3.224048e-49 |
| MsG0780040826.01 | MsG0880045942.01 | 0.835412 | 1.703930e-56 | 2.082044e-53 |
| MsG0780040826.01 | MsG0880046267.01 | -0.825046 | 5.801795e-54 | 5.229985e-51 |
| MsG0780040826.01 | MsG0880046765.01 | -0.800083 | 1.702348e-48 | 7.855425e-46 |
| MsG0780040826.01 | MsG0880046823.01 | 0.818952 | 1.498550e-52 | 1.137866e-49 |
| MsG0780040826.01 | MsG0880047312.01 | 0.844569 | 6.971581e-59 | 1.130233e-55 |
| MsG0780040826.01 | MsG0880047389.01 | 0.824476 | 7.907993e-54 | 7.011815e-51 |
| MsG0780040826.01 | MsG0880047392.01 | -0.812157 | 4.882620e-51 | 3.081065e-48 |
| MsG0780040826.01 | MsG0880047656.01 | -0.825266 | 5.147050e-54 | 4.668699e-51 |
| MsG0280010644.01 | MsG0780040826.01 | 0.857338 | 1.747774e-62 | 4.299255e-59 |
| MsG0280011440.01 | MsG0780040826.01 | 0.837540 | 4.893825e-57 | 6.377011e-54 |
| MsG0380012868.01 | MsG0780040826.01 | -0.804924 | 1.710378e-49 | 8.930768e-47 |
| MsG0380014609.01 | MsG0780040826.01 | 0.800288 | 1.546279e-48 | 7.172697e-46 |
| MsG0680030957.01 | MsG0780040826.01 | -0.806627 | 7.503875e-50 | 4.092370e-47 |
| MsG0680033744.01 | MsG0780040826.01 | 0.817549 | 3.113440e-52 | 2.274258e-49 |
| MsG0480020753.01 | MsG0780040826.01 | -0.817233 | 3.666502e-52 | 2.655148e-49 |
| MsG0480022872.01 | MsG0780040826.01 | 0.835786 | 1.370243e-56 | 1.693150e-53 |
| MsG0480023156.01 | MsG0780040826.01 | 0.802739 | 4.863319e-49 | 2.400678e-46 |
| MsG0480023314.01 | MsG0780040826.01 | -0.801382 | 9.243288e-49 | 4.408047e-46 |
| MsG0580024994.01 | MsG0780040826.01 | 0.807796 | 4.243947e-50 | 2.385918e-47 |
| MsG0380016057.01 | MsG0780040826.01 | -0.804791 | 1.823598e-49 | 9.488905e-47 |
| MsG0380016188.01 | MsG0780040826.01 | 0.816580 | 5.138891e-52 | 3.655491e-49 |
| MsG0380016543.01 | MsG0780040826.01 | -0.815804 | 7.660766e-52 | 5.335119e-49 |
| MsG0380016544.01 | MsG0780040826.01 | -0.812467 | 4.178395e-51 | 2.658918e-48 |
| MsG0380016574.01 | MsG0780040826.01 | 0.806493 | 8.009492e-50 | 4.353411e-47 |
| MsG0380016619.01 | MsG0780040826.01 | 0.821019 | 5.044536e-53 | 4.056813e-50 |
| MsG0380016836.01 | MsG0780040826.01 | -0.817041 | 4.049967e-52 | 2.917570e-49 |
| MsG0380016869.01 | MsG0780040826.01 | 0.859083 | 5.284935e-63 | 1.378666e-59 |
| MsG0380016878.01 | MsG0780040826.01 | 0.831531 | 1.583288e-55 | 1.723027e-52 |
| MsG0380016993.01 | MsG0780040826.01 | 0.815823 | 7.586815e-52 | 5.286120e-49 |
| MsG0380017143.01 | MsG0780040826.01 | -0.841671 | 4.126457e-58 | 6.106956e-55 |
| MsG0580027183.01 | MsG0780040826.01 | -0.823333 | 1.465299e-53 | 1.257892e-50 |
| MsG0580028337.01 | MsG0780040826.01 | 0.801583 | 8.409861e-49 | 4.030789e-46 |
| MsG0580029522.01 | MsG0780040826.01 | 0.812292 | 4.562955e-51 | 2.889914e-48 |
| MsG0580029523.01 | MsG0780040826.01 | 0.826331 | 2.876804e-54 | 2.689635e-51 |
| MsG0580030231.01 | MsG0780040826.01 | 0.814798 | 1.282251e-51 | 8.687696e-49 |
| MsG0280006668.01 | MsG0780040826.01 | 0.831708 | 1.432540e-55 | 1.567195e-52 |
| MsG0280007852.01 | MsG0780040826.01 | -0.814562 | 1.446339e-51 | 9.737670e-49 |
| MsG0280008452.01 | MsG0780040826.01 | 0.845497 | 3.913477e-59 | 6.534003e-56 |
| MsG0280009445.01 | MsG0780040826.01 | -0.811706 | 6.121663e-51 | 3.816160e-48 |
| MsG0780038584.01 | MsG0780040826.01 | 0.801807 | 7.564697e-49 | 3.646452e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040826.01.T01 | MTR_7g099210 | 69.463 | 298 | 15 | 4 | 24 | 252 | 188 | 478 | 2.27e-124 | 371 |
| MsG0780040826.01.T01 | MTR_1g069355 | 40.876 | 274 | 112 | 7 | 10 | 255 | 205 | 456 | 1.23e-45 | 162 |
| MsG0780040826.01.T01 | MTR_1g069355 | 40.876 | 274 | 112 | 7 | 10 | 255 | 205 | 456 | 1.62e-45 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040826.01.T01 | AT1G04140 | 30.116 | 259 | 128 | 9 | 24 | 250 | 224 | 461 | 8.55e-18 | 83.2 |
| MsG0780040826.01.T01 | AT1G04140 | 30.116 | 259 | 128 | 9 | 24 | 250 | 224 | 461 | 8.62e-18 | 83.2 |
| MsG0780040826.01.T01 | AT5G43930 | 48.750 | 80 | 36 | 1 | 10 | 89 | 237 | 311 | 1.10e-15 | 76.6 |
| MsG0780040826.01.T01 | AT5G43930 | 50.000 | 80 | 33 | 1 | 10 | 89 | 213 | 285 | 1.12e-15 | 76.6 |
| MsG0780040826.01.T01 | AT5G43930 | 50.000 | 80 | 33 | 1 | 10 | 89 | 213 | 285 | 1.12e-15 | 76.6 |
| MsG0780040826.01.T01 | AT5G43930 | 50.000 | 80 | 33 | 1 | 10 | 89 | 213 | 285 | 1.12e-15 | 76.6 |
Find 60 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCCTCTTATATTGTGTTC+TGG | 0.308760 | 7:-83009024 | None:intergenic |
| TTCTCTAATGGAATGGGAAT+TGG | 0.338125 | 7:-83008378 | MsG0780040826.01.T01:CDS |
| GTGCATACTGCTTTCTCTAA+TGG | 0.347834 | 7:-83008390 | MsG0780040826.01.T01:CDS |
| ACCTCGGCCGTTAAAAGATA+TGG | 0.356344 | 7:+83008880 | None:intergenic |
| GCTAGTCATGACGCTGGTTC+AGG | 0.361696 | 7:-83008552 | MsG0780040826.01.T01:CDS |
| TTGACTTCCTTCAGCCGGTC+TGG | 0.395921 | 7:+83008314 | None:intergenic |
| TTTCTACAACAGGATGATGA+TGG | 0.458593 | 7:-83008148 | MsG0780040826.01.T01:intron |
| CTGTGTTGACTTCCTTCAGC+CGG | 0.460994 | 7:+83008309 | None:intergenic |
| ATGCCATCTTCTGCAATGTC+TGG | 0.461031 | 7:-83008001 | MsG0780040826.01.T01:CDS |
| ATATCGTGCAGCTGTACATA+TGG | 0.461205 | 7:-83008998 | MsG0780040826.01.T01:CDS |
| TACTGCTTTCTCTAATGGAA+TGG | 0.472180 | 7:-83008385 | MsG0780040826.01.T01:CDS |
| CCCGTGTGAGGTAGCATTGA+GGG | 0.475913 | 7:+83008106 | None:intergenic |
| CCCCTCAATGCTACCTCACA+CGG | 0.479076 | 7:-83008107 | MsG0780040826.01.T01:CDS |
| ACTGCTTTCTCTAATGGAAT+GGG | 0.479934 | 7:-83008384 | MsG0780040826.01.T01:CDS |
| CTGCCAGACATTGCAGAAGA+TGG | 0.486488 | 7:+83007998 | None:intergenic |
| ACAGATTAGTTCTAGTGTAA+TGG | 0.489225 | 7:-83008059 | MsG0780040826.01.T01:CDS |
| AACCTGATCTACAGAAGATC+GGG | 0.499387 | 7:+83007965 | None:intergenic |
| ATGACAGAGGCGACGTCCAT+TGG | 0.504441 | 7:-83008725 | MsG0780040826.01.T01:CDS |
| GTCTCCCATGGATACAGTCT+TGG | 0.511829 | 7:-83008451 | MsG0780040826.01.T01:CDS |
| GATGATGGGTCAAGCCAAGC+TGG | 0.524347 | 7:-83008133 | MsG0780040826.01.T01:CDS |
| CAACCTCACAATGGACGGTA+TGG | 0.524573 | 7:-83008349 | MsG0780040826.01.T01:CDS |
| AAAAGATATGGCGCAGCATG+AGG | 0.527214 | 7:+83008892 | None:intergenic |
| TAAGAGAACTTGCATCGGTA+GGG | 0.528435 | 7:+83008283 | None:intergenic |
| AATCTCCAAGACTGTATCCA+TGG | 0.530387 | 7:+83008446 | None:intergenic |
| TTAAGAGAACTTGCATCGGT+AGG | 0.532461 | 7:+83008282 | None:intergenic |
| AAACCTGATCTACAGAAGAT+CGG | 0.549118 | 7:+83007964 | None:intergenic |
| TGCCGTGGCTCAGTTTCAAG+CGG | 0.552360 | 7:-83008508 | MsG0780040826.01.T01:CDS |
| TTCTACAACAGGATGATGAT+GGG | 0.561989 | 7:-83008147 | MsG0780040826.01.T01:intron |
| ATCGGCAACCTCACAATGGA+CGG | 0.577256 | 7:-83008354 | MsG0780040826.01.T01:CDS |
| TAAAGACAAGGCGATCTCTA+CGG | 0.578661 | 7:-83008929 | MsG0780040826.01.T01:CDS |
| ATATGGCACTACGACAAGAA+AGG | 0.584515 | 7:-83008981 | MsG0780040826.01.T01:CDS |
| GGACGTCGCCTCTGTCATTG+AGG | 0.588258 | 7:+83008730 | None:intergenic |
| GATGAAACCAGACCGGCTGA+AGG | 0.588340 | 7:-83008321 | MsG0780040826.01.T01:CDS |
| ACCCGTGTGAGGTAGCATTG+AGG | 0.592212 | 7:+83008105 | None:intergenic |
| GCATTGAGGGGAGACCAGCT+TGG | 0.596774 | 7:+83008119 | None:intergenic |
| AATGGAATGGGAATTGGCAT+CGG | 0.601027 | 7:-83008372 | MsG0780040826.01.T01:CDS |
| ATTAGAGAAAGCAGTATGCA+CGG | 0.601449 | 7:+83008392 | None:intergenic |
| AGGATATTGTAAGTAACCAA+TGG | 0.603398 | 7:+83008709 | None:intergenic |
| ATCTCCAAGACTGTATCCAT+GGG | 0.604350 | 7:+83008447 | None:intergenic |
| GTACCAGCTTGAGAGTTAGT+CGG | 0.607254 | 7:+83008423 | None:intergenic |
| TGCTACATCAGCATTAGAAG+TGG | 0.609631 | 7:+83008024 | None:intergenic |
| TGATACTATAGTGTCTCCCA+TGG | 0.611348 | 7:-83008463 | MsG0780040826.01.T01:CDS |
| TTAGAGAAAGCAGTATGCAC+GGG | 0.618198 | 7:+83008393 | None:intergenic |
| GCTACATCAGCATTAGAAGT+GGG | 0.622520 | 7:+83008025 | None:intergenic |
| TACATTAAGAGAACTTGCAT+CGG | 0.624258 | 7:+83008278 | None:intergenic |
| GACAAAGTAACATGTTCTGT+AGG | 0.624906 | 7:+83008656 | None:intergenic |
| AAAGATATGGCGCAGCATGA+GGG | 0.625734 | 7:+83008893 | None:intergenic |
| ATTCCGACTAACTCTCAAGC+TGG | 0.626131 | 7:-83008426 | MsG0780040826.01.T01:CDS |
| TCTCCATACCGTCCATTGTG+AGG | 0.627723 | 7:+83008346 | None:intergenic |
| ACAAATTGAGTCTTCTGCCG+TGG | 0.631489 | 7:-83008523 | MsG0780040826.01.T01:CDS |
| CCCTCAATGCTACCTCACAC+GGG | 0.637598 | 7:-83008106 | MsG0780040826.01.T01:CDS |
| TGGCATCGGCAACCTCACAA+TGG | 0.648272 | 7:-83008358 | MsG0780040826.01.T01:CDS |
| GTCCGCTTGAAACTGAGCCA+CGG | 0.655549 | 7:+83008506 | None:intergenic |
| CCGTGTGAGGTAGCATTGAG+GGG | 0.655824 | 7:+83008107 | None:intergenic |
| ATTACACTAGAACTAATCTG+TGG | 0.661265 | 7:+83008061 | None:intergenic |
| GGAGACTGATGAAACCAGAC+CGG | 0.663373 | 7:-83008328 | MsG0780040826.01.T01:CDS |
| TTCAGATTCCTCAATGACAG+AGG | 0.666751 | 7:-83008738 | MsG0780040826.01.T01:CDS |
| TCACGACTAACACCCGTGTG+AGG | 0.675774 | 7:+83008094 | None:intergenic |
| CAGCATGCTAGTCATGACGC+TGG | 0.681322 | 7:-83008558 | MsG0780040826.01.T01:CDS |
| AAACACAAGTTCATTCACCT+CGG | 0.683452 | 7:+83008864 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTCTTTAACACAAAAATT+GGG | + | Chr7:83008045-83008064 | None:intergenic | 20.0% |
| ! | AATTAACATAGTGAATAGCA+TGG | + | Chr7:83008163-83008182 | None:intergenic | 25.0% |
| ! | ATTAACATAGTGAATAGCAT+GGG | + | Chr7:83008162-83008181 | None:intergenic | 25.0% |
| ! | CTTGTCTTTAACACAAAAAT+TGG | + | Chr7:83008046-83008065 | None:intergenic | 25.0% |
| ! | TGTCTTTAACACAAAAATTG+GGG | + | Chr7:83008044-83008063 | None:intergenic | 25.0% |
| ! | TTCTCTTAATGTATGTTACA+TGG | - | Chr7:83008717-83008736 | MsG0780040826.01.T01:CDS | 25.0% |
| !! | CAATTTTTGTGTTAAAGACA+AGG | - | Chr7:83008044-83008063 | MsG0780040826.01.T01:CDS | 25.0% |
| AGGATATTGTAAGTAACCAA+TGG | + | Chr7:83008279-83008298 | None:intergenic | 30.0% | |
| ATTACACTAGAACTAATCTG+TGG | + | Chr7:83008927-83008946 | None:intergenic | 30.0% | |
| TACATTAAGAGAACTTGCAT+CGG | + | Chr7:83008710-83008729 | None:intergenic | 30.0% | |
| !! | ACAGATTAGTTCTAGTGTAA+TGG | - | Chr7:83008926-83008945 | MsG0780040826.01.T01:CDS | 30.0% |
| AAACACAAGTTCATTCACCT+CGG | + | Chr7:83008124-83008143 | None:intergenic | 35.0% | |
| ACATTTGTGACAAAAACAGC+AGG | + | Chr7:83008305-83008324 | None:intergenic | 35.0% | |
| ACTGCTTTCTCTAATGGAAT+GGG | - | Chr7:83008601-83008620 | MsG0780040826.01.T01:intron | 35.0% | |
| ATTAGAGAAAGCAGTATGCA+CGG | + | Chr7:83008596-83008615 | None:intergenic | 35.0% | |
| GACAAAGTAACATGTTCTGT+AGG | + | Chr7:83008332-83008351 | None:intergenic | 35.0% | |
| TAACACAAAAATTGGGGAGT+AGG | + | Chr7:83008038-83008057 | None:intergenic | 35.0% | |
| TACTGCTTTCTCTAATGGAA+TGG | - | Chr7:83008600-83008619 | MsG0780040826.01.T01:intron | 35.0% | |
| TCATCATCCTGTTGTAGAAA+AGG | + | Chr7:83008837-83008856 | None:intergenic | 35.0% | |
| TTCTACAACAGGATGATGAT+GGG | - | Chr7:83008838-83008857 | MsG0780040826.01.T01:intron | 35.0% | |
| TTCTCTAATGGAATGGGAAT+TGG | - | Chr7:83008607-83008626 | MsG0780040826.01.T01:intron | 35.0% | |
| TTTCTACAACAGGATGATGA+TGG | - | Chr7:83008837-83008856 | MsG0780040826.01.T01:intron | 35.0% | |
| ! | GGAATTACCTTTTCTACAAC+AGG | - | Chr7:83008827-83008846 | MsG0780040826.01.T01:intron | 35.0% |
| ! | GGTGAATGAACTTGTGTTTT+TGG | - | Chr7:83008125-83008144 | MsG0780040826.01.T01:CDS | 35.0% |
| AAAGGCAATGACACATTAGG+TGG | + | Chr7:83008362-83008381 | None:intergenic | 40.0% | |
| AAAGGTAATTCCCATCCACT+TGG | + | Chr7:83008819-83008838 | None:intergenic | 40.0% | |
| AAGGTAATTCCCATCCACTT+GGG | + | Chr7:83008818-83008837 | None:intergenic | 40.0% | |
| AATCTCCAAGACTGTATCCA+TGG | + | Chr7:83008542-83008561 | None:intergenic | 40.0% | |
| AATGGAATGGGAATTGGCAT+CGG | - | Chr7:83008613-83008632 | MsG0780040826.01.T01:intron | 40.0% | |
| ATATCGTGCAGCTGTACATA+TGG | - | Chr7:83007987-83008006 | MsG0780040826.01.T01:CDS | 40.0% | |
| ATATGGCACTACGACAAGAA+AGG | - | Chr7:83008004-83008023 | MsG0780040826.01.T01:CDS | 40.0% | |
| ATCTCCAAGACTGTATCCAT+GGG | + | Chr7:83008541-83008560 | None:intergenic | 40.0% | |
| CTAGACAAACCGCAAATCAT+GGG | - | Chr7:83008745-83008764 | MsG0780040826.01.T01:CDS | 40.0% | |
| CTCGACTCATCAACAGAATA+CGG | + | Chr7:83008397-83008416 | None:intergenic | 40.0% | |
| GAGAAAGGCAATGACACATT+AGG | + | Chr7:83008365-83008384 | None:intergenic | 40.0% | |
| GCTACATCAGCATTAGAAGT+GGG | + | Chr7:83008963-83008982 | None:intergenic | 40.0% | |
| GGGTCTCTTGAAGAAACAAA+CGG | + | Chr7:83008798-83008817 | None:intergenic | 40.0% | |
| GTGCATACTGCTTTCTCTAA+TGG | - | Chr7:83008595-83008614 | MsG0780040826.01.T01:intron | 40.0% | |
| TAAAGACAAGGCGATCTCTA+CGG | - | Chr7:83008056-83008075 | MsG0780040826.01.T01:CDS | 40.0% | |
| TAGACAAACCGCAAATCATG+GGG | - | Chr7:83008746-83008765 | MsG0780040826.01.T01:CDS | 40.0% | |
| TCTAGACAAACCGCAAATCA+TGG | - | Chr7:83008744-83008763 | MsG0780040826.01.T01:CDS | 40.0% | |
| TGATACTATAGTGTCTCCCA+TGG | - | Chr7:83008522-83008541 | MsG0780040826.01.T01:CDS | 40.0% | |
| TGCTACATCAGCATTAGAAG+TGG | + | Chr7:83008964-83008983 | None:intergenic | 40.0% | |
| TTAGAGAAAGCAGTATGCAC+GGG | + | Chr7:83008595-83008614 | None:intergenic | 40.0% | |
| TTCAGATTCCTCAATGACAG+AGG | - | Chr7:83008247-83008266 | MsG0780040826.01.T01:intron | 40.0% | |
| TTTGTGACAAAAACAGCAGG+TGG | + | Chr7:83008302-83008321 | None:intergenic | 40.0% | |
| ! | TAAGAGAACTTGCATCGGTA+GGG | + | Chr7:83008705-83008724 | None:intergenic | 40.0% |
| ! | TGCTGCGCCATATCTTTTAA+CGG | - | Chr7:83008098-83008117 | MsG0780040826.01.T01:CDS | 40.0% |
| ! | TTAAGAGAACTTGCATCGGT+AGG | + | Chr7:83008706-83008725 | None:intergenic | 40.0% |
| AAAAGATATGGCGCAGCATG+AGG | + | Chr7:83008096-83008115 | None:intergenic | 45.0% | |
| AAAGATATGGCGCAGCATGA+GGG | + | Chr7:83008095-83008114 | None:intergenic | 45.0% | |
| AAATCATGGGGTTCATCCAG+AGG | - | Chr7:83008758-83008777 | MsG0780040826.01.T01:CDS | 45.0% | |
| ACAAATTGAGTCTTCTGCCG+TGG | - | Chr7:83008462-83008481 | MsG0780040826.01.T01:CDS | 45.0% | |
| ACCTCGGCCGTTAAAAGATA+TGG | + | Chr7:83008108-83008127 | None:intergenic | 45.0% | |
| ATGCCATCTTCTGCAATGTC+TGG | - | Chr7:83008984-83009003 | MsG0780040826.01.T01:CDS | 45.0% | |
| ATTCCGACTAACTCTCAAGC+TGG | - | Chr7:83008559-83008578 | MsG0780040826.01.T01:intron | 45.0% | |
| GACTCATCAACAGAATACGG+AGG | + | Chr7:83008394-83008413 | None:intergenic | 45.0% | |
| GGATGAAATTGACCATCCTC+TGG | + | Chr7:83008777-83008796 | None:intergenic | 45.0% | |
| GTACCAGCTTGAGAGTTAGT+CGG | + | Chr7:83008565-83008584 | None:intergenic | 45.0% | |
| GTTTCTTCAAGAGACCCAAG+TGG | - | Chr7:83008801-83008820 | MsG0780040826.01.T01:intron | 45.0% | |
| TGGATGAACCCCATGATTTG+CGG | + | Chr7:83008757-83008776 | None:intergenic | 45.0% | |
| TTCAAGAGACCCAAGTGGAT+GGG | - | Chr7:83008806-83008825 | MsG0780040826.01.T01:intron | 45.0% | |
| !!! | TTTTTATTTTATTTTTCTTT+TGG | - | Chr7:83008182-83008201 | MsG0780040826.01.T01:intron | 5.0% |
| ACATGCTTGCTTTGATGCGC+AGG | - | Chr7:83008208-83008227 | MsG0780040826.01.T01:intron | 50.0% | |
| ATCGGCAACCTCACAATGGA+CGG | - | Chr7:83008631-83008650 | MsG0780040826.01.T01:intron | 50.0% | |
| CAACCTCACAATGGACGGTA+TGG | - | Chr7:83008636-83008655 | MsG0780040826.01.T01:intron | 50.0% | |
| CTGCCAGACATTGCAGAAGA+TGG | + | Chr7:83008990-83009009 | None:intergenic | 50.0% | |
| CTTCAAGAGACCCAAGTGGA+TGG | - | Chr7:83008805-83008824 | MsG0780040826.01.T01:intron | 50.0% | |
| GGAGACTGATGAAACCAGAC+CGG | - | Chr7:83008657-83008676 | MsG0780040826.01.T01:intron | 50.0% | |
| GTCTCCCATGGATACAGTCT+TGG | - | Chr7:83008534-83008553 | MsG0780040826.01.T01:CDS | 50.0% | |
| GTGACAAAAACAGCAGGTGG+AGG | + | Chr7:83008299-83008318 | None:intergenic | 50.0% | |
| TCTCCATACCGTCCATTGTG+AGG | + | Chr7:83008642-83008661 | None:intergenic | 50.0% | |
| ! | GCCATATCTTTTAACGGCCG+AGG | - | Chr7:83008104-83008123 | MsG0780040826.01.T01:CDS | 50.0% |
| !! | CTGTGTTGACTTCCTTCAGC+CGG | + | Chr7:83008679-83008698 | None:intergenic | 50.0% |
| ACCCGTGTGAGGTAGCATTG+AGG | + | Chr7:83008883-83008902 | None:intergenic | 55.0% | |
| ATGACAGAGGCGACGTCCAT+TGG | - | Chr7:83008260-83008279 | MsG0780040826.01.T01:intron | 55.0% | |
| CAGCATGCTAGTCATGACGC+TGG | - | Chr7:83008427-83008446 | MsG0780040826.01.T01:CDS | 55.0% | |
| CATGGGGTTCATCCAGAGGA+TGG | - | Chr7:83008762-83008781 | MsG0780040826.01.T01:intron | 55.0% | |
| CCCCTCAATGCTACCTCACA+CGG | - | Chr7:83008878-83008897 | MsG0780040826.01.T01:CDS | 55.0% | |
| CCCTCAATGCTACCTCACAC+GGG | - | Chr7:83008879-83008898 | MsG0780040826.01.T01:CDS | 55.0% | |
| GATGAAACCAGACCGGCTGA+AGG | - | Chr7:83008664-83008683 | MsG0780040826.01.T01:intron | 55.0% | |
| GTCCGCTTGAAACTGAGCCA+CGG | + | Chr7:83008482-83008501 | None:intergenic | 55.0% | |
| TCACGACTAACACCCGTGTG+AGG | + | Chr7:83008894-83008913 | None:intergenic | 55.0% | |
| TGCCGTGGCTCAGTTTCAAG+CGG | - | Chr7:83008477-83008496 | MsG0780040826.01.T01:CDS | 55.0% | |
| TTGACTTCCTTCAGCCGGTC+TGG | + | Chr7:83008674-83008693 | None:intergenic | 55.0% | |
| ! | ATACGGAGGCACGAGGAGAA+AGG | + | Chr7:83008380-83008399 | None:intergenic | 55.0% |
| ! | CAACAGAATACGGAGGCACG+AGG | + | Chr7:83008387-83008406 | None:intergenic | 55.0% |
| ! | CCCGTGTGAGGTAGCATTGA+GGG | + | Chr7:83008882-83008901 | None:intergenic | 55.0% |
| ! | CCGTGTGAGGTAGCATTGAG+GGG | + | Chr7:83008881-83008900 | None:intergenic | 55.0% |
| !! | GATGATGGGTCAAGCCAAGC+TGG | - | Chr7:83008852-83008871 | MsG0780040826.01.T01:intron | 55.0% |
| !! | GCTAGTCATGACGCTGGTTC+AGG | - | Chr7:83008433-83008452 | MsG0780040826.01.T01:CDS | 55.0% |
| !! | TGGCATCGGCAACCTCACAA+TGG | - | Chr7:83008627-83008646 | MsG0780040826.01.T01:intron | 55.0% |
| GCATTGAGGGGAGACCAGCT+TGG | + | Chr7:83008869-83008888 | None:intergenic | 60.0% | |
| GGACGTCGCCTCTGTCATTG+AGG | + | Chr7:83008258-83008277 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 83007973 | 83009034 | 83007973 | ID=MsG0780040826.01;Name=MsG0780040826.01 |
| Chr7 | mRNA | 83007973 | 83009034 | 83007973 | ID=MsG0780040826.01.T01;Parent=MsG0780040826.01;Name=MsG0780040826.01.T01;_AED=0.45;_eAED=0.47;_QI=0|0|0|1|0.66|0.75|4|0|255 |
| Chr7 | exon | 83008861 | 83009034 | 83008861 | ID=MsG0780040826.01.T01:exon:38568;Parent=MsG0780040826.01.T01 |
| Chr7 | exon | 83008667 | 83008777 | 83008667 | ID=MsG0780040826.01.T01:exon:38567;Parent=MsG0780040826.01.T01 |
| Chr7 | exon | 83008281 | 83008577 | 83008281 | ID=MsG0780040826.01.T01:exon:38566;Parent=MsG0780040826.01.T01 |
| Chr7 | exon | 83007973 | 83008158 | 83007973 | ID=MsG0780040826.01.T01:exon:38565;Parent=MsG0780040826.01.T01 |
| Chr7 | CDS | 83008861 | 83009034 | 83008861 | ID=MsG0780040826.01.T01:cds;Parent=MsG0780040826.01.T01 |
| Chr7 | CDS | 83008667 | 83008777 | 83008667 | ID=MsG0780040826.01.T01:cds;Parent=MsG0780040826.01.T01 |
| Chr7 | CDS | 83008281 | 83008577 | 83008281 | ID=MsG0780040826.01.T01:cds;Parent=MsG0780040826.01.T01 |
| Chr7 | CDS | 83007973 | 83008158 | 83007973 | ID=MsG0780040826.01.T01:cds;Parent=MsG0780040826.01.T01 |
| Gene Sequence |
| Protein sequence |
