AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011290.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011290.01.T01 MTR_2g101640 76.883 385 39 6 75 410 34 417 0.0 563
MsG0280011290.01.T01 MTR_2g101640 83.117 77 8 1 411 487 560 631 3.99e-31 127
MsG0280011290.01.T01 MTR_2g101610 64.341 387 84 7 75 410 38 421 6.39e-155 455
MsG0280011290.01.T01 MTR_2g101610 70.270 74 22 0 411 484 564 637 1.20e-23 104
MsG0280011290.01.T01 MTR_2g101590 63.049 387 89 6 75 410 37 420 3.05e-152 448
MsG0280011290.01.T01 MTR_2g101590 70.270 74 22 0 411 484 563 636 1.29e-23 104
MsG0280011290.01.T01 MTR_4g011280 58.442 385 108 6 75 410 43 424 5.43e-144 426
MsG0280011290.01.T01 MTR_2g101560 60.925 389 94 7 75 410 38 421 9.68e-141 419
MsG0280011290.01.T01 MTR_2g101560 82.432 74 12 1 411 483 564 637 1.42e-29 122
MsG0280011290.01.T01 MTR_1g057460 57.692 390 94 7 75 410 55 427 4.10e-139 412
MsG0280011290.01.T01 MTR_1g057460 57.105 373 89 7 92 410 1 356 2.46e-130 387
MsG0280011290.01.T01 MTR_0236s0050 56.568 373 91 7 92 410 1 356 3.98e-120 361
MsG0280011290.01.T01 MTR_2g101650 46.632 386 154 8 75 410 35 418 9.48e-106 327
MsG0280011290.01.T01 MTR_8g103233 38.601 386 182 12 75 410 28 408 9.97e-73 241
MsG0280011290.01.T01 MTR_1g026740 36.434 387 189 8 75 410 28 408 1.48e-72 240
MsG0280011290.01.T01 MTR_1g009200 40.464 388 173 12 75 410 38 419 2.77e-71 237
MsG0280011290.01.T01 MTR_1g026750 36.788 386 189 8 75 410 29 409 1.54e-66 224
MsG0280011290.01.T01 MTR_1g026770 37.179 390 181 11 75 410 26 405 4.14e-66 223
MsG0280011290.01.T01 MTR_5g055000 29.602 402 212 14 69 411 23 412 8.79e-42 157
MsG0280011290.01.T01 MTR_4g107580 29.442 394 215 13 75 410 35 423 2.17e-39 150
MsG0280011290.01.T01 MTR_8g469480 28.463 397 217 10 75 410 49 439 1.68e-38 148
MsG0280011290.01.T01 MTR_4g107510 29.049 389 222 12 75 410 47 434 3.04e-38 147
MsG0280011290.01.T01 MTR_5g038060 26.768 396 231 10 75 413 42 435 2.02e-37 145
MsG0280011290.01.T01 MTR_7g088790 28.358 402 208 14 75 411 40 426 1.00e-35 140
MsG0280011290.01.T01 MTR_4g114340 28.307 378 208 11 75 398 35 403 4.84e-35 138
MsG0280011290.01.T01 MTR_7g064800 28.463 397 218 15 75 410 37 428 2.37e-34 136
MsG0280011290.01.T01 MTR_7g088825 27.612 402 211 14 75 411 33 419 2.57e-34 136
MsG0280011290.01.T01 MTR_5g038190 27.877 391 225 11 75 410 35 423 5.89e-34 135
MsG0280011290.01.T01 MTR_4g107530 26.601 406 242 12 75 426 44 447 5.50e-33 132
MsG0280011290.01.T01 MTR_4g107610 27.089 395 221 13 75 409 42 429 1.03e-31 129
MsG0280011290.01.T01 MTR_7g064780 26.700 397 223 15 75 410 37 426 3.60e-31 127
MsG0280011290.01.T01 MTR_4g101380 26.500 400 226 12 75 413 38 430 6.63e-31 126
MsG0280011290.01.T01 MTR_4g015080 28.316 392 214 14 75 410 45 425 6.66e-31 126
MsG0280011290.01.T01 MTR_8g469470 25.823 395 233 12 75 410 43 436 1.13e-30 125
MsG0280011290.01.T01 MTR_3g462710 28.133 391 218 15 75 410 35 417 2.43e-30 124
MsG0280011290.01.T01 MTR_7g088820 25.564 399 223 14 75 411 36 422 3.07e-30 124
MsG0280011290.01.T01 MTR_5g012270 25.436 401 220 14 75 410 40 426 3.27e-30 124
MsG0280011290.01.T01 MTR_3g100980 29.592 392 207 14 76 410 28 407 9.06e-30 122
MsG0280011290.01.T01 MTR_1g009170 31.229 301 122 11 186 444 20 277 5.77e-29 118
MsG0280011290.01.T01 MTR_8g087780 27.411 394 225 12 75 410 32 422 2.75e-28 118
MsG0280011290.01.T01 MTR_7g088820 25.648 347 198 12 113 411 26 360 1.15e-27 116
MsG0280011290.01.T01 MTR_1g085090 27.297 381 217 13 80 410 32 402 2.57e-27 115
MsG0280011290.01.T01 MTR_5g085850 25.490 408 236 11 75 426 41 436 5.38e-27 114
MsG0280011290.01.T01 MTR_2g017750 26.884 398 224 16 75 410 45 437 8.24e-27 114
MsG0280011290.01.T01 MTR_7g067010 28.070 399 206 17 75 410 35 415 8.55e-27 114
MsG0280011290.01.T01 MTR_3g112450 26.410 390 221 11 77 410 36 415 2.14e-26 112
MsG0280011290.01.T01 MTR_3g462710 34.254 181 105 6 238 410 134 308 5.72e-26 110
MsG0280011290.01.T01 MTR_7g088820 25.786 318 179 10 140 411 6 312 7.42e-26 110
MsG0280011290.01.T01 MTR_3g112460 25.191 393 225 14 75 410 34 414 1.24e-25 110
MsG0280011290.01.T01 MTR_3g112470 25.700 393 223 13 75 410 34 414 2.43e-25 109
MsG0280011290.01.T01 MTR_2g093160 27.559 381 216 13 83 410 40 413 3.88e-25 108
MsG0280011290.01.T01 MTR_8g087810 28.250 400 215 17 75 410 32 423 7.81e-25 108
MsG0280011290.01.T01 MTR_7g111260 26.161 409 239 13 79 434 31 429 3.56e-23 103
MsG0280011290.01.T01 MTR_7g005930 27.901 405 208 17 75 414 46 431 5.46e-23 102
MsG0280011290.01.T01 MTR_3g100980 35.294 170 95 4 245 410 277 435 7.73e-23 102
MsG0280011290.01.T01 MTR_3g069500 27.329 322 181 11 131 411 115 424 9.37e-23 102
MsG0280011290.01.T01 MTR_2g093180 31.754 211 129 7 210 410 210 415 1.48e-22 101
MsG0280011290.01.T01 MTR_1g075440 26.225 408 226 14 78 425 42 434 1.63e-22 101
MsG0280011290.01.T01 MTR_5g012290 24.455 413 209 15 75 410 38 424 2.08e-22 100
MsG0280011290.01.T01 MTR_2g005130 35.503 169 94 4 244 410 266 421 5.44e-22 99.8
MsG0280011290.01.T01 MTR_7g013270 27.340 406 211 16 75 414 101 488 9.29e-22 99.0
MsG0280011290.01.T01 MTR_7g098200 24.444 405 235 12 75 421 40 431 1.08e-21 99.0
MsG0280011290.01.T01 MTR_3g069440 34.225 187 109 6 245 425 258 436 1.15e-21 98.6
MsG0280011290.01.T01 MTR_7g098200 24.439 401 230 11 75 421 40 421 1.20e-21 98.6
MsG0280011290.01.T01 MTR_1g041815 27.604 384 204 14 78 402 41 409 1.63e-21 98.2
MsG0280011290.01.T01 MTR_1g041885 27.515 338 190 11 117 411 49 374 1.64e-21 97.8
MsG0280011290.01.T01 MTR_1g041875 29.882 338 182 16 117 411 96 421 3.23e-21 97.4
MsG0280011290.01.T01 MTR_5g014150 25.987 304 180 9 148 410 143 442 3.90e-21 97.1
MsG0280011290.01.T01 MTR_1g116930 26.515 396 217 16 75 410 34 415 1.26e-20 95.5
MsG0280011290.01.T01 MTR_3g014790 30.964 197 106 5 232 410 214 398 2.48e-20 94.4
MsG0280011290.01.T01 MTR_1g041835 25.195 385 212 14 78 402 41 409 3.96e-20 94.0
MsG0280011290.01.T01 MTR_8g038880 31.892 185 110 3 238 410 223 403 3.97e-20 94.0
MsG0280011290.01.T01 MTR_2g093640 39.416 137 72 5 279 410 284 414 9.91e-20 92.4
MsG0280011290.01.T01 MTR_7g098230 24.242 396 219 12 78 410 40 417 1.08e-19 92.4
MsG0280011290.01.T01 MTR_8g091265 39.683 126 70 4 285 406 3 126 2.22e-19 85.1
MsG0280011290.01.T01 MTR_7g065080 25.994 327 191 11 124 410 19 334 2.32e-19 91.3
MsG0280011290.01.T01 MTR_7g065080 25.994 327 191 11 124 410 106 421 2.47e-19 91.3
MsG0280011290.01.T01 MTR_7g098220 26.154 390 219 11 78 410 44 421 3.85e-19 90.9
MsG0280011290.01.T01 MTR_7g098040 26.209 393 215 12 78 410 48 425 5.57e-19 90.5
MsG0280011290.01.T01 MTR_4g019580 27.984 243 153 8 181 413 199 429 6.39e-19 90.1
MsG0280011290.01.T01 MTR_3g005010 27.119 295 151 9 155 410 126 395 9.62e-19 89.4
MsG0280011290.01.T01 MTR_7g098200 25.455 330 190 10 135 421 1 317 1.55e-18 88.6
MsG0280011290.01.T01 MTR_7g098220 26.166 386 216 11 82 410 4 377 1.69e-18 89.0
MsG0280011290.01.T01 MTR_3g069420 25.672 335 176 11 126 410 111 422 8.97e-18 86.7
MsG0280011290.01.T01 MTR_7g006540 26.185 401 218 18 75 410 74 461 1.12e-17 86.3
MsG0280011290.01.T01 MTR_7g010820 25.064 391 232 11 75 410 37 421 2.18e-17 85.5
MsG0280011290.01.T01 MTR_7g098210 26.154 325 196 12 83 394 1 294 2.29e-17 84.7
MsG0280011290.01.T01 MTR_4g098800 25.228 329 187 10 130 410 117 434 4.84e-17 84.3
MsG0280011290.01.T01 MTR_4g098800 25.228 329 187 10 130 410 182 499 4.95e-17 84.3
MsG0280011290.01.T01 MTR_4g033375 22.785 395 208 11 78 410 46 405 1.60e-16 82.4
MsG0280011290.01.T01 MTR_4g033395 25.130 386 210 13 78 410 46 405 3.64e-16 81.3
MsG0280011290.01.T01 MTR_4g033310 26.695 236 124 7 178 410 150 339 5.39e-16 80.9
MsG0280011290.01.T01 MTR_5g038380 23.513 353 183 11 121 410 101 429 8.56e-16 80.5
MsG0280011290.01.T01 MTR_4g123537 28.660 321 173 15 130 410 122 426 9.37e-16 80.5
MsG0280011290.01.T01 MTR_4g033325 23.810 315 173 10 134 410 18 303 2.81e-15 78.6
MsG0280011290.01.T01 MTR_3g072300 25.445 393 221 16 78 412 38 416 4.34e-15 78.2
MsG0280011290.01.T01 MTR_4g033315 23.897 272 150 9 178 410 150 403 2.09e-14 75.9
MsG0280011290.01.T01 MTR_4g033310 23.897 272 150 9 178 410 150 403 2.09e-14 75.9
MsG0280011290.01.T01 MTR_4g033385 24.765 319 168 10 134 410 16 304 9.40e-14 73.6
MsG0280011290.01.T01 MTR_4g033325 23.985 271 149 8 178 410 150 401 1.79e-13 73.2
MsG0280011290.01.T01 MTR_4g033325 23.129 294 169 8 155 410 3 277 2.36e-13 72.4
MsG0280011290.01.T01 MTR_0294s0020 31.061 132 77 3 282 410 281 401 3.15e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011290.01.T01 AT1G52190 42.757 428 186 11 75 445 32 457 1.99e-100 314
MsG0280011290.01.T01 AT3G16180 46.036 391 153 12 75 410 34 421 5.98e-98 307
MsG0280011290.01.T01 AT1G69870 28.680 394 223 10 75 413 62 452 5.52e-39 150
MsG0280011290.01.T01 AT1G68570 31.026 390 213 12 75 411 34 420 1.51e-37 145
MsG0280011290.01.T01 AT1G68570 31.105 389 212 12 76 411 5 390 1.87e-37 145
MsG0280011290.01.T01 AT5G28470 29.040 396 219 13 75 414 28 417 1.64e-35 139
MsG0280011290.01.T01 AT1G62200 30.691 391 211 14 75 410 63 448 2.59e-35 139
MsG0280011290.01.T01 AT3G47960 27.735 393 228 12 75 414 72 461 2.96e-35 139
MsG0280011290.01.T01 AT5G62680 27.735 393 222 14 75 410 54 441 6.42e-35 138
MsG0280011290.01.T01 AT5G11570 32.603 365 173 15 75 411 24 343 1.22e-34 135
MsG0280011290.01.T01 AT5G28470 28.900 391 216 13 75 409 28 412 1.54e-34 136
MsG0280011290.01.T01 AT3G54140 26.396 394 221 12 75 410 35 417 2.34e-33 133
MsG0280011290.01.T01 AT3G54140 26.396 394 221 12 75 410 35 417 2.34e-33 133
MsG0280011290.01.T01 AT2G26690 26.598 391 222 12 75 410 35 415 9.58e-33 131
MsG0280011290.01.T01 AT2G26690 26.546 388 220 12 78 410 5 382 1.35e-32 130
MsG0280011290.01.T01 AT1G27080 27.525 396 216 13 75 410 25 409 2.22e-32 130
MsG0280011290.01.T01 AT2G26690 29.073 313 180 9 134 410 64 370 1.27e-31 128
MsG0280011290.01.T01 AT3G45650 27.007 411 244 9 83 448 41 440 1.83e-31 127
MsG0280011290.01.T01 AT3G45650 27.007 411 244 9 83 448 41 440 2.00e-31 127
MsG0280011290.01.T01 AT1G12110 28.993 407 208 15 75 414 38 430 3.01e-31 127
MsG0280011290.01.T01 AT2G02040 28.133 391 218 13 75 410 52 434 3.11e-31 127
MsG0280011290.01.T01 AT1G62200 28.810 420 210 15 75 410 63 477 4.35e-31 127
MsG0280011290.01.T01 AT1G62200 28.810 420 210 15 75 410 77 491 4.74e-31 127
MsG0280011290.01.T01 AT1G27080 29.758 289 162 9 159 410 83 367 1.17e-30 125
MsG0280011290.01.T01 AT3G45660 27.470 415 237 12 83 448 61 460 1.21e-29 122
MsG0280011290.01.T01 AT3G45660 27.470 415 237 12 83 448 40 439 1.34e-29 122
MsG0280011290.01.T01 AT3G45660 27.470 415 237 12 83 448 40 439 1.34e-29 122
MsG0280011290.01.T01 AT5G01180 26.598 391 223 13 75 410 36 417 3.92e-28 118
MsG0280011290.01.T01 AT5G01180 26.598 391 223 13 75 410 36 417 3.92e-28 118
MsG0280011290.01.T01 AT5G01180 26.598 391 223 13 75 410 36 417 3.92e-28 118
MsG0280011290.01.T01 AT1G33440 30.960 323 166 11 130 410 119 426 3.06e-27 115
MsG0280011290.01.T01 AT2G02020 25.840 387 195 12 75 410 53 398 2.15e-25 109
MsG0280011290.01.T01 AT1G18880 24.939 413 246 15 75 430 30 435 4.68e-25 108
MsG0280011290.01.T01 AT1G59740 26.884 398 215 14 75 410 52 435 7.78e-25 108
MsG0280011290.01.T01 AT5G46040 25.758 396 212 14 78 410 41 417 8.08e-25 108
MsG0280011290.01.T01 AT3G21670 24.490 392 237 11 75 413 40 425 4.01e-24 106
MsG0280011290.01.T01 AT3G54450 35.165 182 99 4 241 410 221 395 1.43e-23 104
MsG0280011290.01.T01 AT5G46050 26.471 408 226 13 78 426 41 433 2.03e-23 103
MsG0280011290.01.T01 AT3G45720 26.667 315 188 9 134 413 104 410 2.91e-23 103
MsG0280011290.01.T01 AT3G45700 26.452 310 184 7 134 410 101 399 1.54e-22 101
MsG0280011290.01.T01 AT3G45710 26.603 312 187 9 134 410 106 410 2.47e-22 100
MsG0280011290.01.T01 AT5G46050 27.246 334 188 10 135 426 1 321 3.09e-21 96.7
MsG0280011290.01.T01 AT3G45690 24.868 378 226 11 83 413 37 403 4.95e-21 96.3
MsG0280011290.01.T01 AT1G32450 32.768 177 108 6 243 410 264 438 6.08e-20 93.6
MsG0280011290.01.T01 AT1G69860 24.257 404 217 14 75 410 29 411 4.17e-19 90.9
MsG0280011290.01.T01 AT4G21680 26.316 399 220 15 75 410 39 426 6.29e-19 90.1
MsG0280011290.01.T01 AT3G45680 26.774 310 189 8 134 410 105 409 7.65e-19 89.7
MsG0280011290.01.T01 AT3G53960 32.967 182 112 5 238 413 255 432 5.30e-18 87.4
MsG0280011290.01.T01 AT2G40460 25.127 394 219 13 75 411 35 409 8.27e-17 83.6
MsG0280011290.01.T01 AT5G13400 32.597 181 109 5 238 412 291 464 1.44e-15 79.7
MsG0280011290.01.T01 AT2G37900 29.775 178 114 6 238 410 177 348 5.20e-15 77.8
MsG0280011290.01.T01 AT2G37900 29.775 178 114 6 238 410 256 427 5.58e-15 77.8
MsG0280011290.01.T01 AT1G72140 22.637 402 203 14 75 410 45 404 8.98e-15 77.4
MsG0280011290.01.T01 AT1G22550 30.769 169 95 4 244 410 263 411 3.17e-14 75.5
MsG0280011290.01.T01 AT1G27040 24.041 391 228 14 75 410 38 414 4.23e-14 75.1
MsG0280011290.01.T01 AT1G27040 24.041 391 228 14 75 410 34 410 5.10e-14 74.7
MsG0280011290.01.T01 AT1G22540 26.006 323 168 12 130 410 111 404 6.70e-14 74.3
MsG0280011290.01.T01 AT5G19640 23.500 400 222 14 75 414 70 445 7.66e-14 74.3
MsG0280011290.01.T01 AT1G27040 23.846 390 228 14 76 410 7 382 8.91e-14 73.9
MsG0280011290.01.T01 AT1G22570 31.361 169 99 4 244 410 225 378 1.93e-13 73.2
MsG0280011290.01.T01 AT1G22570 31.361 169 99 4 244 410 262 415 1.96e-13 73.2
MsG0280011290.01.T01 AT1G72125 22.356 331 193 9 121 410 101 408 2.77e-12 69.3

Find 108 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCAAAACCCTATGGTTAT+TGG 0.182926 2:-82039263 None:intergenic
TGAGGTGATATGTCTGTTTA+AGG 0.190010 2:-82040292 None:intergenic
GAACAAAGCTTGTGTTATTA+AGG 0.199255 2:+82040098 MsG0280011290.01.T01:CDS
CCAATTCCCATTCTTATCTT+TGG 0.217832 2:-82040444 None:intergenic
TTTCATTGCAGATTCTTATC+TGG 0.222306 2:+82038217 MsG0280011290.01.T01:CDS
TTAGTTTGCAGTTGGGCTTA+TGG 0.263352 2:+82040876 MsG0280011290.01.T01:intron
CACGGAGGCGGCCGTGCCGC+TGG 0.266561 2:-82039094 None:intergenic
CTTAACATTGGTGGATCATT+TGG 0.268401 2:+82040252 MsG0280011290.01.T01:CDS
ACTTGCAAGGATGGCAAGTT+TGG 0.274733 2:+82038077 MsG0280011290.01.T01:CDS
TGGTAGGTTCAATATTTATA+TGG 0.289622 2:+82040352 MsG0280011290.01.T01:CDS
TCCAAAACCCTATGGTTATT+GGG 0.290253 2:-82039262 None:intergenic
TGTATTTCATGGGAAGTTAC+AGG 0.295046 2:+82038121 MsG0280011290.01.T01:CDS
TCCCAATAACCATAGGGTTT+TGG 0.296059 2:+82039261 MsG0280011290.01.T01:CDS
AAAAGAACCAGCTTGATTAC+TGG 0.321168 2:+82039462 MsG0280011290.01.T01:CDS
ATCTTTGGACTGATCCTAAC+TGG 0.325470 2:-82040429 None:intergenic
CAACATGATATTGTATTTCA+TGG 0.333002 2:+82038110 MsG0280011290.01.T01:CDS
ATCACCATGCCTTTCATCAT+TGG 0.334156 2:+82037814 MsG0280011290.01.T01:CDS
CTTTCATGTTCCATTGCATT+TGG 0.341589 2:+82039211 MsG0280011290.01.T01:CDS
TCAAATTTACCATCACAAAA+AGG 0.352676 2:+82039551 MsG0280011290.01.T01:CDS
GTCAAGATTAGTGAAGAAAA+TGG 0.355594 2:+82041071 MsG0280011290.01.T01:CDS
TACAGTTGATCAAGTATCTA+AGG 0.357491 2:+82040902 MsG0280011290.01.T01:CDS
CGGCCGTGCCGCTGGGATCA+TGG 0.357805 2:-82039086 None:intergenic
TTGTTAGAGTTATTCCATTA+TGG 0.358457 2:+82040208 MsG0280011290.01.T01:CDS
CCAAAGATAAGAATGGGAAT+TGG 0.367717 2:+82040444 MsG0280011290.01.T01:CDS
AGTGATGAAACTAGTTCAAA+TGG 0.371589 2:+82041002 MsG0280011290.01.T01:CDS
ACGGAGGCGGCCGTGCCGCT+GGG 0.388589 2:-82039093 None:intergenic
TTCATTGCAGATTCTTATCT+GGG 0.389095 2:+82038218 MsG0280011290.01.T01:CDS
GTTATTCCATTATGGTCTAC+AGG 0.396747 2:+82040216 MsG0280011290.01.T01:CDS
TTTGTGATCTTGACATAAAG+AGG 0.399723 2:-82039442 None:intergenic
CTTGCAAGGATGGCAAGTTT+GGG 0.411221 2:+82038078 MsG0280011290.01.T01:CDS
CAAAGATAAGAATGGGAATT+GGG 0.414668 2:+82040445 MsG0280011290.01.T01:CDS
TTCTGTTGATGATGATGAAA+TGG 0.416797 2:+82037741 MsG0280011290.01.T01:CDS
GAGAAGAATCTGAGTAGCTT+TGG 0.416901 2:-82038154 None:intergenic
GCAATGTTACTCTCTGCCTT+TGG 0.420989 2:+82039163 MsG0280011290.01.T01:CDS
ATGAAATACAATATCATGTT+GGG 0.421958 2:-82038108 None:intergenic
TGCTGGTACTTCAAAGTTTG+AGG 0.423718 2:-82040310 None:intergenic
ATGATCCCTGTAGACCATAA+TGG 0.433520 2:-82040222 None:intergenic
CCTTTGGTCCTCATGTCAAT+AGG 0.435539 2:+82039179 MsG0280011290.01.T01:CDS
AGACCACCCTTGCGTCTTTG+AGG 0.440202 2:-82037790 None:intergenic
GAATCAACCTCATTAATACT+TGG 0.449875 2:-82041114 None:intergenic
CCTCTAGCATCAAAGCTAAG+AGG 0.452609 2:+82040402 MsG0280011290.01.T01:CDS
ATCAGCAACAACAGGTCAAA+TGG 0.456751 2:+82039141 MsG0280011290.01.T01:CDS
GGCTGTAAATCAGCAACAAC+AGG 0.462810 2:+82039133 MsG0280011290.01.T01:CDS
ATCAGTCCAAAGATAAGAAT+GGG 0.469148 2:+82040438 MsG0280011290.01.T01:CDS
GATCAGTCCAAAGATAAGAA+TGG 0.470530 2:+82040437 MsG0280011290.01.T01:CDS
AGCTAAGAGGGAAACCAGTT+AGG 0.474106 2:+82040415 MsG0280011290.01.T01:CDS
GTTGGATGGTTGCACGGAGG+CGG 0.475474 2:-82039106 None:intergenic
TTATTCCAACTGATAAACTA+AGG 0.476338 2:+82039592 MsG0280011290.01.T01:CDS
GAATGCACTATTTGATGATA+AGG 0.477429 2:+82040977 MsG0280011290.01.T01:CDS
TGAATTCAAGAATGGTGGTC+AGG 0.484071 2:+82041037 MsG0280011290.01.T01:CDS
TAAATTTGAGGCGAGTGCTT+AGG 0.485949 2:-82039537 None:intergenic
CCGTGCAACCATCCAACAAA+AGG 0.497521 2:+82039112 MsG0280011290.01.T01:CDS
CAACCACAGGTGTGAAATGC+TGG 0.499037 2:-82038190 None:intergenic
AAGATAATCCCAATAACCAT+AGG 0.503374 2:+82039254 MsG0280011290.01.T01:CDS
CCTCTTAGCTTTGATGCTAG+AGG 0.504379 2:-82040402 None:intergenic
ATATACCTTAGTTTATCAGT+TGG 0.509029 2:-82039597 None:intergenic
AGAATATTTCCAAAACCCTA+TGG 0.509252 2:-82039270 None:intergenic
TCTCTCTGACTCAGCAGAGA+TGG 0.511733 2:+82037910 MsG0280011290.01.T01:CDS
TAATGAGGCACTTGCAAGGA+TGG 0.518909 2:+82038068 MsG0280011290.01.T01:CDS
ATGATGTCTCTTAACATTGG+TGG 0.521670 2:+82040243 MsG0280011290.01.T01:CDS
ATGGTTCAGCAATAAATCCT+TGG 0.525938 2:+82040145 MsG0280011290.01.T01:CDS
GTGATGAAACTAGTTCAAAT+GGG 0.528060 2:+82041003 MsG0280011290.01.T01:CDS
CAGAGAGATCGAGGATGACT+CGG 0.528742 2:-82037895 None:intergenic
AACATGATATTGTATTTCAT+GGG 0.529372 2:+82038111 MsG0280011290.01.T01:CDS
GCAGAGATGGAGGATGACTT+AGG 0.535544 2:+82037923 MsG0280011290.01.T01:CDS
CAGCATTTCACACCTGTGGT+TGG 0.551571 2:+82038191 MsG0280011290.01.T01:CDS
TGAAGAAAATGGATCAAATG+AGG 0.555265 2:+82041082 MsG0280011290.01.T01:CDS
CATGAAATACAATATCATGT+TGG 0.556956 2:-82038109 None:intergenic
ACAGACAGATAGATAGATAA+CGG 0.557789 2:-82037838 None:intergenic
CAGCCAGCATTTCACACCTG+TGG 0.559020 2:+82038187 MsG0280011290.01.T01:CDS
CTCTAGCATCAAAGCTAAGA+GGG 0.563358 2:+82040403 MsG0280011290.01.T01:CDS
CTCTGACTCAGCAGAGATGG+AGG 0.565908 2:+82037913 MsG0280011290.01.T01:CDS
TGCAAAACCAGTAATCAAGC+TGG 0.568525 2:-82039469 None:intergenic
GGTCCTCATGTCAATAGGAA+TGG 0.568589 2:+82039184 MsG0280011290.01.T01:CDS
GAGTTAACTGAATTCAAGAA+TGG 0.573785 2:+82041029 MsG0280011290.01.T01:CDS
TCAACAACCTCAAAGACGCA+AGG 0.577324 2:+82037783 MsG0280011290.01.T01:CDS
TAATGGAATAACTCTAACAA+GGG 0.581669 2:-82040205 None:intergenic
GTGTGAAATGCTGGCTGCAG+AGG 0.587972 2:-82038181 None:intergenic
ATCATGATGTCTCTTAACAT+TGG 0.589519 2:+82040240 MsG0280011290.01.T01:CDS
AGATAATCCCAATAACCATA+GGG 0.590293 2:+82039255 MsG0280011290.01.T01:CDS
ATTTGAGGCGAGTGCTTAGG+TGG 0.590380 2:-82039534 None:intergenic
TTGGTCTGCACCAAATGCAA+TGG 0.596753 2:-82039221 None:intergenic
TCTACTGTGCAGAGTCTCCA+AGG 0.601641 2:-82040162 None:intergenic
GAGTGACGAAAATGATTCAA+AGG 0.604343 2:+82040926 MsG0280011290.01.T01:CDS
TTATTCCATTATGGTCTACA+GGG 0.605759 2:+82040217 MsG0280011290.01.T01:CDS
ATAACACTAAAAGATCCTGC+TGG 0.609060 2:-82040327 None:intergenic
TTAGATACTTGATCAACTGT+AGG 0.609166 2:-82040900 None:intergenic
CCTCATGTCAATAGGAATGG+TGG 0.611914 2:+82039187 MsG0280011290.01.T01:CDS
CAGCCATGATCCCAGCGGCA+CGG 0.612206 2:+82039083 MsG0280011290.01.T01:CDS
ATTTATTGCTGAACCATCAG+CGG 0.612577 2:-82040139 None:intergenic
ATAATGGAATAACTCTAACA+AGG 0.613210 2:-82040206 None:intergenic
GATAACGGACCAATGATGAA+AGG 0.614259 2:-82037823 None:intergenic
CTGCTGAGTCAGAGAGATCG+AGG 0.614449 2:-82037904 None:intergenic
GAACAAGATATAGCCGCTGA+TGG 0.616787 2:+82040126 MsG0280011290.01.T01:CDS
CCTATTGACATGAGGACCAA+AGG 0.617072 2:-82039179 None:intergenic
GCAATGAAAGCACCAACCAC+AGG 0.618105 2:-82038203 None:intergenic
TCAAACTTTGAAGTACCAGC+AGG 0.619130 2:+82040312 MsG0280011290.01.T01:CDS
CAACAACCTCAAAGACGCAA+GGG 0.622892 2:+82037784 MsG0280011290.01.T01:CDS
TTAACTGAATTCAAGAATGG+TGG 0.626429 2:+82041032 MsG0280011290.01.T01:CDS
TAGCTAATGAGGCACTTGCA+AGG 0.628805 2:+82038064 MsG0280011290.01.T01:intron
TATAGGGAATGGGAATGTTG+TGG 0.634364 2:+82039056 MsG0280011290.01.T01:intron
TGACGAAAATGATTCAAAGG+AGG 0.645013 2:+82040929 MsG0280011290.01.T01:CDS
CAACCTCAAAGACGCAAGGG+TGG 0.648310 2:+82037787 MsG0280011290.01.T01:CDS
CGGACCAATGATGAAAGGCA+TGG 0.678009 2:-82037818 None:intergenic
CCACCATTCCTATTGACATG+AGG 0.689197 2:-82039187 None:intergenic
TTTGTTGGATGGTTGCACGG+AGG 0.699061 2:-82039109 None:intergenic
ATGCTAGAGGAATAAGAACG+CGG 0.767450 2:-82040389 None:intergenic
GTTAACAGCCATGATCCCAG+CGG 0.768220 2:+82039078 MsG0280011290.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGAGTAAATTATTATTTTT+AGG + Chr2:82038433-82038452 MsG0280011290.01.T01:intron 10.0%
!! AAAAAGAAAGAATTACAAAA+GGG + Chr2:82038668-82038687 MsG0280011290.01.T01:intron 15.0%
!! ATTTCTGATAATATTAACAA+GGG + Chr2:82040792-82040811 MsG0280011290.01.T01:intron 15.0%
!!! AGTAAATTATTATTTTTAGG+TGG + Chr2:82038436-82038455 MsG0280011290.01.T01:intron 15.0%
!!! GAATTTTGTTGTATAATATA+TGG + Chr2:82038030-82038049 MsG0280011290.01.T01:intron 15.0%
!!! GTAAATTATTATTTTTAGGT+GGG + Chr2:82038437-82038456 MsG0280011290.01.T01:intron 15.0%
!!! TAAATTATTATTTTTAGGTG+GGG + Chr2:82038438-82038457 MsG0280011290.01.T01:intron 15.0%
!! AAAAAGGTAGAATCATAAAA+AGG + Chr2:82038921-82038940 MsG0280011290.01.T01:intron 20.0%
!! AACATGATATTGTATTTCAT+GGG + Chr2:82038111-82038130 MsG0280011290.01.T01:CDS 20.0%
!! AACTTCATTAATCACAAATT+GGG + Chr2:82039803-82039822 MsG0280011290.01.T01:intron 20.0%
!! AACTTTGTATATGTTTAATG+CGG - Chr2:82039986-82040005 None:intergenic 20.0%
!! ATATACAAAAGCTAAAATGA+TGG - Chr2:82039635-82039654 None:intergenic 20.0%
!! ATCCAAAAAAAAATAAAGAG+AGG - Chr2:82038776-82038795 None:intergenic 20.0%
!! ATGAAATACAATATCATGTT+GGG - Chr2:82038111-82038130 None:intergenic 20.0%
!! ATTACGAAAACAATCTAATT+TGG + Chr2:82040006-82040025 MsG0280011290.01.T01:intron 20.0%
!! GAAAAAGAAAGAATTACAAA+AGG + Chr2:82038667-82038686 MsG0280011290.01.T01:intron 20.0%
!! GATTAATGAAGTTACATTAA+TGG - Chr2:82039796-82039815 None:intergenic 20.0%
!! GATTTCTGATAATATTAACA+AGG + Chr2:82040791-82040810 MsG0280011290.01.T01:intron 20.0%
!! TAACTTCATTAATCACAAAT+TGG + Chr2:82039802-82039821 MsG0280011290.01.T01:intron 20.0%
!! TATGATTAAATGCAATACAA+TGG + Chr2:82038795-82038814 MsG0280011290.01.T01:intron 20.0%
!! TTACTAGTTATACTTATACT+TGG + Chr2:82037978-82037997 MsG0280011290.01.T01:intron 20.0%
!! TTCACATTAAAGAGAATATT+TGG + Chr2:82038004-82038023 MsG0280011290.01.T01:intron 20.0%
!!! AAATTATTATTTTTAGGTGG+GGG + Chr2:82038439-82038458 MsG0280011290.01.T01:intron 20.0%
!!! AATTCTTTCTTTTTCATACA+AGG - Chr2:82038662-82038681 None:intergenic 20.0%
!!! ATTCTTTCTTTTTCATACAA+GGG - Chr2:82038661-82038680 None:intergenic 20.0%
!!! CCTTTTTGTTTTTTGTTATA+GGG + Chr2:82039040-82039059 MsG0280011290.01.T01:intron 20.0%
!!! CTTTGTAATAGAATTCATTT+TGG - Chr2:82040643-82040662 None:intergenic 20.0%
!!! TCCAATTTTCAATCATAAAA+AGG - Chr2:82038618-82038637 None:intergenic 20.0%
!!! TCCTTTTTATGATTGAAAAT+TGG + Chr2:82038614-82038633 MsG0280011290.01.T01:intron 20.0%
!!! TTTTGTATATTCTGTATATG+TGG + Chr2:82039645-82039664 MsG0280011290.01.T01:intron 20.0%
! AAAGTTCCATAAAATTTGGT+AGG + Chr2:82038946-82038965 MsG0280011290.01.T01:intron 25.0%
! ACTTCATTAATCACAAATTG+GGG + Chr2:82039804-82039823 MsG0280011290.01.T01:intron 25.0%
! ATAAGGAAAAAAAGCAATTC+AGG + Chr2:82040514-82040533 MsG0280011290.01.T01:intron 25.0%
! ATATACCTTAGTTTATCAGT+TGG - Chr2:82039600-82039619 None:intergenic 25.0%
! CAAAGATAGAAAAAACACAA+TGG - Chr2:82038332-82038351 None:intergenic 25.0%
! CAACATGATATTGTATTTCA+TGG + Chr2:82038110-82038129 MsG0280011290.01.T01:CDS 25.0%
! CATGAAATACAATATCATGT+TGG - Chr2:82038112-82038131 None:intergenic 25.0%
! CATTAATGGTTAATGAGTAT+CGG - Chr2:82039782-82039801 None:intergenic 25.0%
! CCCTATAACAAAAAACAAAA+AGG - Chr2:82039043-82039062 None:intergenic 25.0%
! GATAAAATTCCATCAAATCT+TGG + Chr2:82038690-82038709 MsG0280011290.01.T01:intron 25.0%
! GGAAAAAGTTCCATAAAATT+TGG + Chr2:82038942-82038961 MsG0280011290.01.T01:intron 25.0%
! TAATGGAATAACTCTAACAA+GGG - Chr2:82040208-82040227 None:intergenic 25.0%
! TCAAATTTACCATCACAAAA+AGG + Chr2:82039551-82039570 MsG0280011290.01.T01:CDS 25.0%
! TGGTAGGTTCAATATTTATA+TGG + Chr2:82040352-82040371 MsG0280011290.01.T01:CDS 25.0%
! TTATTCCAACTGATAAACTA+AGG + Chr2:82039592-82039611 MsG0280011290.01.T01:CDS 25.0%
! TTGTTAGAGTTATTCCATTA+TGG + Chr2:82040208-82040227 MsG0280011290.01.T01:CDS 25.0%
!! AATATGCCTACCAAATTTTA+TGG - Chr2:82038955-82038974 None:intergenic 25.0%
!! ATAATGGAATAACTCTAACA+AGG - Chr2:82040209-82040228 None:intergenic 25.0%
!! CTTGATTTTGAATCATAACA+AGG - Chr2:82038870-82038889 None:intergenic 25.0%
!! GATTATCTTTTCTATTCACT+TGG - Chr2:82039243-82039262 None:intergenic 25.0%
!! GTTTTTAAATTTTCTCCACT+TGG + Chr2:82040470-82040489 MsG0280011290.01.T01:intron 25.0%
!! TTTTATTGTTGTAGCTAATG+AGG + Chr2:82038053-82038072 MsG0280011290.01.T01:intron 25.0%
!! TTTTTGTGATGGTAAATTTG+AGG - Chr2:82039552-82039571 None:intergenic 25.0%
!!! ATTCTACCTTTTTCATACAA+GGG - Chr2:82038914-82038933 None:intergenic 25.0%
!!! CATTGTGTTTTTTCTATCTT+TGG + Chr2:82038330-82038349 MsG0280011290.01.T01:intron 25.0%
!!! GCCTTTTTGTTTTTTGTTAT+AGG + Chr2:82039039-82039058 MsG0280011290.01.T01:intron 25.0%
!!! GTATTTTTTAGTTTGCAGTT+GGG + Chr2:82040869-82040888 MsG0280011290.01.T01:intron 25.0%
!!! TGCCTCTCTTTATTTTTTTT+TGG + Chr2:82038771-82038790 MsG0280011290.01.T01:intron 25.0%
!!! TGTATTTTTTAGTTTGCAGT+TGG + Chr2:82040868-82040887 MsG0280011290.01.T01:intron 25.0%
!!! TGTTTTTTGTTATAGGGAAT+GGG + Chr2:82039046-82039065 MsG0280011290.01.T01:intron 25.0%
!!! TTGTTTTTTGTTATAGGGAA+TGG + Chr2:82039045-82039064 MsG0280011290.01.T01:intron 25.0%
!!! TTTTGGAAATATTCTTCAGT+TGG + Chr2:82039278-82039297 MsG0280011290.01.T01:CDS 25.0%
AAATTCCATCAAATCTTGGT+AGG + Chr2:82038694-82038713 MsG0280011290.01.T01:intron 30.0%
AAGATAATCCCAATAACCAT+AGG + Chr2:82039254-82039273 MsG0280011290.01.T01:CDS 30.0%
AATGAATATCTAGACATACC+AGG - Chr2:82038282-82038301 None:intergenic 30.0%
ACAGACAGATAGATAGATAA+CGG - Chr2:82037841-82037860 None:intergenic 30.0%
AGAATATTTCCAAAACCCTA+TGG - Chr2:82039273-82039292 None:intergenic 30.0%
AGATAATCCCAATAACCATA+GGG + Chr2:82039255-82039274 MsG0280011290.01.T01:CDS 30.0%
AGTGATGAAACTAGTTCAAA+TGG + Chr2:82041002-82041021 MsG0280011290.01.T01:CDS 30.0%
ATATACCTACCAAGATTTGA+TGG - Chr2:82038702-82038721 None:intergenic 30.0%
ATCAGTCCAAAGATAAGAAT+GGG + Chr2:82040438-82040457 MsG0280011290.01.T01:CDS 30.0%
ATCATGATGTCTCTTAACAT+TGG + Chr2:82040240-82040259 MsG0280011290.01.T01:CDS 30.0%
CAAAGATAAGAATGGGAATT+GGG + Chr2:82040445-82040464 MsG0280011290.01.T01:CDS 30.0%
GAGTTAACTGAATTCAAGAA+TGG + Chr2:82041029-82041048 MsG0280011290.01.T01:CDS 30.0%
GTAAGAAAGAAACAAAGTAG+AGG - Chr2:82038308-82038327 None:intergenic 30.0%
GTATATATCCAAGATCATTG+TGG + Chr2:82039349-82039368 MsG0280011290.01.T01:intron 30.0%
GTCAAGATTAGTGAAGAAAA+TGG + Chr2:82041071-82041090 MsG0280011290.01.T01:CDS 30.0%
GTGATGAAACTAGTTCAAAT+GGG + Chr2:82041003-82041022 MsG0280011290.01.T01:CDS 30.0%
TACAGTTGATCAAGTATCTA+AGG + Chr2:82040902-82040921 MsG0280011290.01.T01:CDS 30.0%
TAGATTCCCTTGTATGAAAA+AGG + Chr2:82038905-82038924 MsG0280011290.01.T01:intron 30.0%
TCTCATTACAGCACTAATTT+CGG - Chr2:82039004-82039023 None:intergenic 30.0%
TGAAGAAAATGGATCAAATG+AGG + Chr2:82041082-82041101 MsG0280011290.01.T01:CDS 30.0%
TTAACTGAATTCAAGAATGG+TGG + Chr2:82041032-82041051 MsG0280011290.01.T01:CDS 30.0%
TTAGATACTTGATCAACTGT+AGG - Chr2:82040903-82040922 None:intergenic 30.0%
TTATTCCATTATGGTCTACA+GGG + Chr2:82040217-82040236 MsG0280011290.01.T01:CDS 30.0%
TTCATTGCAGATTCTTATCT+GGG + Chr2:82038218-82038237 MsG0280011290.01.T01:CDS 30.0%
TTGAAAATTGGATGTTGAGA+TGG + Chr2:82038626-82038645 MsG0280011290.01.T01:intron 30.0%
TTTCATTGCAGATTCTTATC+TGG + Chr2:82038217-82038236 MsG0280011290.01.T01:CDS 30.0%
TTTGTGATCTTGACATAAAG+AGG - Chr2:82039445-82039464 None:intergenic 30.0%
TTTGTGGTTAATGATGCTAT+TGG + Chr2:82039891-82039910 MsG0280011290.01.T01:intron 30.0%
! AGGATCTTTTAGTGTTATCA+TGG + Chr2:82040332-82040351 MsG0280011290.01.T01:CDS 30.0%
! ATTTGAACCTCTAAAAACTG+CGG - Chr2:82039839-82039858 None:intergenic 30.0%
! CAGCTAATTCTTTCATTTTC+AGG + Chr2:82040070-82040089 MsG0280011290.01.T01:intron 30.0%
! GAACAAAGCTTGTGTTATTA+AGG + Chr2:82040098-82040117 MsG0280011290.01.T01:CDS 30.0%
! GAATGCACTATTTGATGATA+AGG + Chr2:82040977-82040996 MsG0280011290.01.T01:CDS 30.0%
! TCTTTTAGTGTTATCATGGT+AGG + Chr2:82040336-82040355 MsG0280011290.01.T01:CDS 30.0%
! TTTTGTCACAATAACCTAAG+TGG + Chr2:82039711-82039730 MsG0280011290.01.T01:intron 30.0%
!! GATTCTACCTTTTTCATACA+AGG - Chr2:82038915-82038934 None:intergenic 30.0%
!! TTCTGTTGATGATGATGAAA+TGG + Chr2:82037741-82037760 MsG0280011290.01.T01:CDS 30.0%
!! TTGAGATTTTCTGAAAGAGA+AGG + Chr2:82038467-82038486 MsG0280011290.01.T01:intron 30.0%
AAAAGAACCAGCTTGATTAC+TGG + Chr2:82039462-82039481 MsG0280011290.01.T01:CDS 35.0%
AATGAACCTAATCCAACACT+AGG - Chr2:82038250-82038269 None:intergenic 35.0%
AATTAGTCGTCAATTACGCT+CGG - Chr2:82039959-82039978 None:intergenic 35.0%
ACCACAAATTTAGACGTATC+TGG - Chr2:82039879-82039898 None:intergenic 35.0%
AGGTACTATATGGTTATAGC+TGG + Chr2:82040825-82040844 MsG0280011290.01.T01:intron 35.0%
AGTGCTGTAATGAGAAAAGT+TGG + Chr2:82039009-82039028 MsG0280011290.01.T01:intron 35.0%
ATAACACTAAAAGATCCTGC+TGG - Chr2:82040330-82040349 None:intergenic 35.0%
ATAGAAAACGTTACTTCGAG+AGG + Chr2:82040754-82040773 MsG0280011290.01.T01:intron 35.0%
ATATCCAAGATCATTGTGGT+TGG + Chr2:82039353-82039372 MsG0280011290.01.T01:intron 35.0%
ATGATGTCTCTTAACATTGG+TGG + Chr2:82040243-82040262 MsG0280011290.01.T01:CDS 35.0%
ATGGTTCAGCAATAAATCCT+TGG + Chr2:82040145-82040164 MsG0280011290.01.T01:CDS 35.0%
ATTTATTGCTGAACCATCAG+CGG - Chr2:82040142-82040161 None:intergenic 35.0%
CAGTTCAATTGTTTCCTACT+AGG + Chr2:82038377-82038396 MsG0280011290.01.T01:intron 35.0%
CCAAAGATAAGAATGGGAAT+TGG + Chr2:82040444-82040463 MsG0280011290.01.T01:CDS 35.0%
CCAATTCCCATTCTTATCTT+TGG - Chr2:82040447-82040466 None:intergenic 35.0%
CCACAAATTTAGACGTATCT+GGG - Chr2:82039878-82039897 None:intergenic 35.0%
CTTTCATGTTCCATTGCATT+TGG + Chr2:82039211-82039230 MsG0280011290.01.T01:CDS 35.0%
GAAATACTAGACATAGTCCT+CGG - Chr2:82040671-82040690 None:intergenic 35.0%
GAGTGACGAAAATGATTCAA+AGG + Chr2:82040926-82040945 MsG0280011290.01.T01:CDS 35.0%
GATCAGTCCAAAGATAAGAA+TGG + Chr2:82040437-82040456 MsG0280011290.01.T01:CDS 35.0%
GATCATTGTGGTTGGAAAAT+TGG + Chr2:82039361-82039380 MsG0280011290.01.T01:intron 35.0%
GGAAAAAAAGCAATTCAGGA+AGG + Chr2:82040518-82040537 MsG0280011290.01.T01:intron 35.0%
GTTATTCCATTATGGTCTAC+AGG + Chr2:82040216-82040235 MsG0280011290.01.T01:CDS 35.0%
TAAAACAGCGATAACCACTT+AGG - Chr2:82039728-82039747 None:intergenic 35.0%
TCCAAAACCCTATGGTTATT+GGG - Chr2:82039265-82039284 None:intergenic 35.0%
TCTATTACAAAGAGTTTCCG+AGG + Chr2:82040651-82040670 MsG0280011290.01.T01:intron 35.0%
TGACGAAAATGATTCAAAGG+AGG + Chr2:82040929-82040948 MsG0280011290.01.T01:CDS 35.0%
TGAGGTGATATGTCTGTTTA+AGG - Chr2:82040295-82040314 None:intergenic 35.0%
TGTATTTCATGGGAAGTTAC+AGG + Chr2:82038121-82038140 MsG0280011290.01.T01:CDS 35.0%
TGTTGAAAATGTCTGCATTG+TGG + Chr2:82040564-82040583 MsG0280011290.01.T01:intron 35.0%
TTCCAAAACCCTATGGTTAT+TGG - Chr2:82039266-82039285 None:intergenic 35.0%
! ATTTACAGCCTTTTGTTGGA+TGG - Chr2:82039123-82039142 None:intergenic 35.0%
! CTTAACATTGGTGGATCATT+TGG + Chr2:82040252-82040271 MsG0280011290.01.T01:CDS 35.0%
! TTTTCCAACCACAATGATCT+TGG - Chr2:82039360-82039379 None:intergenic 35.0%
!! GTTGAACAAAAGTACCTAGT+AGG - Chr2:82038394-82038413 None:intergenic 35.0%
!! TGATTTACCGCAGTTTTTAG+AGG + Chr2:82039829-82039848 MsG0280011290.01.T01:intron 35.0%
!! TGTGGTTGGAAAATTGGTTT+TGG + Chr2:82039367-82039386 MsG0280011290.01.T01:intron 35.0%
!! TGTTGAGAGATGTTTTGTTG+AGG - Chr2:82037769-82037788 None:intergenic 35.0%
!!! GTGGTTATCGCTGTTTTAAT+AGG + Chr2:82039730-82039749 MsG0280011290.01.T01:intron 35.0%
AGGTTCATTTGTCAGTTTCC+TGG + Chr2:82038261-82038280 MsG0280011290.01.T01:intron 40.0%
ATACCACCCAAACAAAGTTG+AGG - Chr2:82040596-82040615 None:intergenic 40.0%
ATCACCATGCCTTTCATCAT+TGG + Chr2:82037814-82037833 MsG0280011290.01.T01:CDS 40.0%
ATCAGCAACAACAGGTCAAA+TGG + Chr2:82039141-82039160 MsG0280011290.01.T01:CDS 40.0%
ATCTTTGGACTGATCCTAAC+TGG - Chr2:82040432-82040451 None:intergenic 40.0%
ATGATCCCTGTAGACCATAA+TGG - Chr2:82040225-82040244 None:intergenic 40.0%
ATGCTAGAGGAATAAGAACG+CGG - Chr2:82040392-82040411 None:intergenic 40.0%
CCCAGATACGTCTAAATTTG+TGG + Chr2:82039875-82039894 MsG0280011290.01.T01:intron 40.0%
CTCTAGCATCAAAGCTAAGA+GGG + Chr2:82040403-82040422 MsG0280011290.01.T01:CDS 40.0%
GAGAAGAATCTGAGTAGCTT+TGG - Chr2:82038157-82038176 None:intergenic 40.0%
GTGGTTAATGATGCTATTGG+TGG + Chr2:82039894-82039913 MsG0280011290.01.T01:intron 40.0%
TACGCTCGGTAGTTGTTTAA+TGG - Chr2:82039945-82039964 None:intergenic 40.0%
TATAGGGAATGGGAATGTTG+TGG + Chr2:82039056-82039075 MsG0280011290.01.T01:intron 40.0%
TCGTTACGACAGGTACTATA+TGG + Chr2:82040815-82040834 MsG0280011290.01.T01:intron 40.0%
TGAATTCAAGAATGGTGGTC+AGG + Chr2:82041037-82041056 MsG0280011290.01.T01:CDS 40.0%
TGCAAAACCAGTAATCAAGC+TGG - Chr2:82039472-82039491 None:intergenic 40.0%
TGCTGGTACTTCAAAGTTTG+AGG - Chr2:82040313-82040332 None:intergenic 40.0%
! AGCGAAGCATTCAATGCTAT+TGG + Chr2:82040617-82040636 MsG0280011290.01.T01:intron 40.0%
! AGTATTTCTGCTTCCCTTTG+TGG + Chr2:82040683-82040702 MsG0280011290.01.T01:intron 40.0%
! CTTGCACCTCAACTTTGTTT+GGG + Chr2:82040587-82040606 MsG0280011290.01.T01:intron 40.0%
! GATCTGAGTCCTTTTTGTGA+TGG - Chr2:82039563-82039582 None:intergenic 40.0%
! TAAATTTGAGGCGAGTGCTT+AGG - Chr2:82039540-82039559 None:intergenic 40.0%
! TCCCAATAACCATAGGGTTT+TGG + Chr2:82039261-82039280 MsG0280011290.01.T01:CDS 40.0%
! TCGTTTCCTAGTGTTGGATT+AGG + Chr2:82038241-82038260 MsG0280011290.01.T01:intron 40.0%
!! GATAACGGACCAATGATGAA+AGG - Chr2:82037826-82037845 None:intergenic 40.0%
!! GCTGATTTACAGCCTTTTGT+TGG - Chr2:82039127-82039146 None:intergenic 40.0%
!! TCAAACTTTGAAGTACCAGC+AGG + Chr2:82040312-82040331 MsG0280011290.01.T01:CDS 40.0%
!! TGGTTCATGAGTTCTGAACT+TGG + Chr2:82039914-82039933 MsG0280011290.01.T01:intron 40.0%
!! TTAGTTTGCAGTTGGGCTTA+TGG + Chr2:82040876-82040895 MsG0280011290.01.T01:intron 40.0%
!!! ATTATTTTTAGGTGGGGGTG+AGG + Chr2:82038444-82038463 MsG0280011290.01.T01:intron 40.0%
ACTTCGAGAGGAGGAAAGAA+GGG + Chr2:82040766-82040785 MsG0280011290.01.T01:intron 45.0%
ACTTGCAAGGATGGCAAGTT+TGG + Chr2:82038077-82038096 MsG0280011290.01.T01:CDS 45.0%
AGCTAAGAGGGAAACCAGTT+AGG + Chr2:82040415-82040434 MsG0280011290.01.T01:CDS 45.0%
CAACAACCTCAAAGACGCAA+GGG + Chr2:82037784-82037803 MsG0280011290.01.T01:CDS 45.0%
CAGCCATTCCAATCCACAAA+GGG - Chr2:82040699-82040718 None:intergenic 45.0%
CCACCATTCCTATTGACATG+AGG - Chr2:82039190-82039209 None:intergenic 45.0%
CCTATTGACATGAGGACCAA+AGG - Chr2:82039182-82039201 None:intergenic 45.0%
CCTCATGTCAATAGGAATGG+TGG + Chr2:82039187-82039206 MsG0280011290.01.T01:CDS 45.0%
CCTCTAGCATCAAAGCTAAG+AGG + Chr2:82040402-82040421 MsG0280011290.01.T01:CDS 45.0%
CCTTTGGTCCTCATGTCAAT+AGG + Chr2:82039179-82039198 MsG0280011290.01.T01:CDS 45.0%
CTTGCAAGGATGGCAAGTTT+GGG + Chr2:82038078-82038097 MsG0280011290.01.T01:CDS 45.0%
GAAAACGTTACTTCGAGAGG+AGG + Chr2:82040757-82040776 MsG0280011290.01.T01:intron 45.0%
GAACAAGATATAGCCGCTGA+TGG + Chr2:82040126-82040145 MsG0280011290.01.T01:CDS 45.0%
GCAATGTTACTCTCTGCCTT+TGG + Chr2:82039163-82039182 MsG0280011290.01.T01:CDS 45.0%
GCTTGCACCTCAACTTTGTT+TGG + Chr2:82040586-82040605 MsG0280011290.01.T01:intron 45.0%
GGCTGTAAATCAGCAACAAC+AGG + Chr2:82039133-82039152 MsG0280011290.01.T01:CDS 45.0%
GGTCCTCATGTCAATAGGAA+TGG + Chr2:82039184-82039203 MsG0280011290.01.T01:CDS 45.0%
TACTTCGAGAGGAGGAAAGA+AGG + Chr2:82040765-82040784 MsG0280011290.01.T01:intron 45.0%
TCAACAACCTCAAAGACGCA+AGG + Chr2:82037783-82037802 MsG0280011290.01.T01:CDS 45.0%
TTAACAAGGGTCGTTACGAC+AGG + Chr2:82040805-82040824 MsG0280011290.01.T01:intron 45.0%
TTCTGCTTCCCTTTGTGGAT+TGG + Chr2:82040688-82040707 MsG0280011290.01.T01:intron 45.0%
TTGGTCTGCACCAAATGCAA+TGG - Chr2:82039224-82039243 None:intergenic 45.0%
! CCTTTTGTTGGATGGTTGCA+CGG - Chr2:82039115-82039134 None:intergenic 45.0%
! GATAAAAGCATGAGTGCTGC+TGG - Chr2:82039397-82039416 None:intergenic 45.0%
! TAATGAGGCACTTGCAAGGA+TGG + Chr2:82038068-82038087 MsG0280011290.01.T01:CDS 45.0%
! TAGCTAATGAGGCACTTGCA+AGG + Chr2:82038064-82038083 MsG0280011290.01.T01:intron 45.0%
!! CCTCTTAGCTTTGATGCTAG+AGG - Chr2:82040405-82040424 None:intergenic 45.0%
!! CTTCCCTTTGTGGATTGGAA+TGG + Chr2:82040693-82040712 MsG0280011290.01.T01:intron 45.0%
!! GCAGCAGCTTTGAGAGTATA+AGG + Chr2:82040497-82040516 MsG0280011290.01.T01:intron 45.0%
AAAGCTGCTGCAGTACCAAG+TGG - Chr2:82040488-82040507 None:intergenic 50.0%
CAACCACAGGTGTGAAATGC+TGG - Chr2:82038193-82038212 None:intergenic 50.0%
CAGAGAGATCGAGGATGACT+CGG - Chr2:82037898-82037917 None:intergenic 50.0%
CAGCATTTCACACCTGTGGT+TGG + Chr2:82038191-82038210 MsG0280011290.01.T01:CDS 50.0%
CCGTGCAACCATCCAACAAA+AGG + Chr2:82039112-82039131 MsG0280011290.01.T01:CDS 50.0%
CGGACCAATGATGAAAGGCA+TGG - Chr2:82037821-82037840 None:intergenic 50.0%
GCAGAGATGGAGGATGACTT+AGG + Chr2:82037923-82037942 MsG0280011290.01.T01:CDS 50.0%
GCAGCCATTCCAATCCACAA+AGG - Chr2:82040700-82040719 None:intergenic 50.0%
GTTAACAGCCATGATCCCAG+CGG + Chr2:82039078-82039097 MsG0280011290.01.T01:CDS 50.0%
TCTACTGTGCAGAGTCTCCA+AGG - Chr2:82040165-82040184 None:intergenic 50.0%
TCTCTCTGACTCAGCAGAGA+TGG + Chr2:82037910-82037929 MsG0280011290.01.T01:CDS 50.0%
TCTGGGTCGTTTCCTAGTGT+TGG + Chr2:82038235-82038254 MsG0280011290.01.T01:intron 50.0%
TGGAATGGCTGCAGGAAACT+TGG + Chr2:82040708-82040727 MsG0280011290.01.T01:intron 50.0%
TTTGTTGGATGGTTGCACGG+AGG - Chr2:82039112-82039131 None:intergenic 50.0%
! ATTTGAGGCGAGTGCTTAGG+TGG - Chr2:82039537-82039556 None:intergenic 50.0%
! GCACCTCAACTTTGTTTGGG+TGG + Chr2:82040590-82040609 MsG0280011290.01.T01:intron 50.0%
!! GCAATGAAAGCACCAACCAC+AGG - Chr2:82038206-82038225 None:intergenic 50.0%
!! TTGTGGATTGGAATGGCTGC+AGG + Chr2:82040700-82040719 MsG0280011290.01.T01:intron 50.0%
AGACCACCCTTGCGTCTTTG+AGG - Chr2:82037793-82037812 None:intergenic 55.0%
CAACCTCAAAGACGCAAGGG+TGG + Chr2:82037787-82037806 MsG0280011290.01.T01:CDS 55.0%
CAGCCAGCATTTCACACCTG+TGG + Chr2:82038187-82038206 MsG0280011290.01.T01:CDS 55.0%
CTCTGACTCAGCAGAGATGG+AGG + Chr2:82037913-82037932 MsG0280011290.01.T01:CDS 55.0%
CTGCTGAGTCAGAGAGATCG+AGG - Chr2:82037907-82037926 None:intergenic 55.0%
TCGAGAGGAGGAAAGAAGGG+TGG + Chr2:82040769-82040788 MsG0280011290.01.T01:intron 55.0%
! GTGTGAAATGCTGGCTGCAG+AGG - Chr2:82038184-82038203 None:intergenic 55.0%
GTTGGATGGTTGCACGGAGG+CGG - Chr2:82039109-82039128 None:intergenic 60.0%
CAGCCATGATCCCAGCGGCA+CGG + Chr2:82039083-82039102 MsG0280011290.01.T01:CDS 65.0%
! CGGCCGTGCCGCTGGGATCA+TGG - Chr2:82039089-82039108 None:intergenic 75.0%
!! ACGGAGGCGGCCGTGCCGCT+GGG - Chr2:82039096-82039115 None:intergenic 80.0%
! CACGGAGGCGGCCGTGCCGC+TGG - Chr2:82039097-82039116 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
Chr2 gene 82037719 82041124 82037719 ID=MsG0280011290.01;Name=MsG0280011290.01
Chr2 mRNA 82037719 82041124 82037719 ID=MsG0280011290.01.T01;Parent=MsG0280011290.01;Name=MsG0280011290.01.T01;_AED=0.49;_eAED=0.57;_QI=0|0.2|0|1|0.4|0.5|6|0|488
Chr2 exon 82037719 82037944 82037719 ID=MsG0280011290.01.T01:exon:12204;Parent=MsG0280011290.01.T01
Chr2 exon 82038067 82038239 82038067 ID=MsG0280011290.01.T01:exon:12205;Parent=MsG0280011290.01.T01
Chr2 exon 82039061 82039299 82039061 ID=MsG0280011290.01.T01:exon:12206;Parent=MsG0280011290.01.T01
Chr2 exon 82039398 82039613 82039398 ID=MsG0280011290.01.T01:exon:12207;Parent=MsG0280011290.01.T01
Chr2 exon 82040092 82040466 82040092 ID=MsG0280011290.01.T01:exon:12208;Parent=MsG0280011290.01.T01
Chr2 exon 82040887 82041124 82040887 ID=MsG0280011290.01.T01:exon:12209;Parent=MsG0280011290.01.T01
Chr2 CDS 82037719 82037944 82037719 ID=MsG0280011290.01.T01:cds;Parent=MsG0280011290.01.T01
Chr2 CDS 82038067 82038239 82038067 ID=MsG0280011290.01.T01:cds;Parent=MsG0280011290.01.T01
Chr2 CDS 82039061 82039299 82039061 ID=MsG0280011290.01.T01:cds;Parent=MsG0280011290.01.T01
Chr2 CDS 82039398 82039613 82039398 ID=MsG0280011290.01.T01:cds;Parent=MsG0280011290.01.T01
Chr2 CDS 82040092 82040466 82040092 ID=MsG0280011290.01.T01:cds;Parent=MsG0280011290.01.T01
Chr2 CDS 82040887 82041124 82040887 ID=MsG0280011290.01.T01:cds;Parent=MsG0280011290.01.T01
Gene Sequence

>MsG0280011290.01.T01

ATGGACAAGAACTTCAACTTTGTTCTGTTGATGATGATGAAATGGTTCCTCAACAAAACATCTCTCAACAACCTCAAAGACGCAAGGGTGGTCTTATCACCATGCCTTTCATCATTGGTCCGTTATCTATCTATCTGTCTGTCTGTCTATCTATTATGCATCACACTATTAAACTACCGAGTCATCCTCGATCTCTCTGACTCAGCAGAGATGGAGGATGACTTAGCTAATGAGGCACTTGCAAGGATGGCAAGTTTGGGACTATTGCCCAACATGATATTGTATTTCATGGGAAGTTACAGGCTTCATCTTGCCAAAGCTACTCAGATTCTTCTCTTATCCTCTGCAGCCAGCATTTCACACCTGTGGTTGGTGCTTTCATTGCAGATTCTTATCTGGGGAATGGGAATGTTGTGGTTAACAGCCATGATCCCAGCGGCACGGCCGCCTCCGTGCAACCATCCAACAAAAGGCTGTAAATCAGCAACAACAGGTCAAATGGCAATGTTACTCTCTGCCTTTGGTCCTCATGTCAATAGGAATGGTGGTCTTTCATGTTCCATTGCATTTGGTGCAGACCAAGTGAATAGAAAAGATAATCCCAATAACCATAGGGTTTTGGAAATATTCTTCAGTTGCAGCACTCATGCTTTTATCTACTATCTGTTTCTTTCTTGCTTCTCCTCTTTATGTCAAGATCACAAAAGAACCAGCTTGATTACTGGTTTTGCACAAGTCACTATTGCTGCTTATAAGAACAGAAAACTTCAATTACCACCTAAGCACTCGCCTCAAATTTACCATCACAAAAAGGACTCAGATCTTGATCTTGTTATTCCAACTGATAAACTAAGGTTTCTGAACAAAGCTTGTGTTATTAAGGATCATGAACAAGATATAGCCGCTGATGGTTCAGCAATAAATCCTTGGAGACTCTGCACAGTAGATCAAGTTGAAGAACTAAAAGCCCTTGTTAGAGTTATTCCATTATGGTCTACAGGGATCATGATGTCTCTTAACATTGGTGGATCATTTGGATTGCTGCAAGCTAAATCCTTAAACAGACATATCACCTCAAACTTTGAAGTACCAGCAGGATCTTTTAGTGTTATCATGGTAGGTTCAATATTTATATGGATAGTACTCTACGACCGCGTTCTTATTCCTCTAGCATCAAAGCTAAGAGGGAAACCAGTTAGGATCAGTCCAAAGATAAGAATGGGAATTGGTTGGGCTTATGGACCTACAGTTGATCAAGTATCTAAGGTGAGTGACGAAAATGATTCAAAGGAGGAAGATTCAACAGAATTCAAGAATGTGAATGCACTATTTGATGATAAGGTTAGTGATGAAACTAGTTCAAATGGGAAAGAGTTAACTGAATTCAAGAATGGTGGTCAGGTTGAGAAAGTAGTCAAGATTAGTGAAGAAAATGGATCAAATGAGGAAGAGTCAACCAAGTATTAA
Protein sequence

>MsG0280011290.01.T01

MDKNFNFVLLMMMKWFLNKTSLNNLKDARVVLSPCLSSLVRYLSICLSVYLLCITLLNYRVILDLSDSAEMEDDLANEALARMASLGLLPNMILYFMGSYRLHLAKATQILLLSSAASISHLWLVLSLQILIWGMGMLWLTAMIPAARPPPCNHPTKGCKSATTGQMAMLLSAFGPHVNRNGGLSCSIAFGADQVNRKDNPNNHRVLEIFFSCSTHAFIYYLFLSCFSSLCQDHKRTSLITGFAQVTIAAYKNRKLQLPPKHSPQIYHHKKDSDLDLVIPTDKLRFLNKACVIKDHEQDIAADGSAINPWRLCTVDQVEELKALVRVIPLWSTGIMMSLNIGGSFGLLQAKSLNRHITSNFEVPAGSFSVIMVGSIFIWIVLYDRVLIPLASKLRGKPVRISPKIRMGIGWAYGPTVDQVSKVSDENDSKEEDSTEFKNVNALFDDKVSDETSSNGKELTEFKNGGQVEKVVKISEENGSNEEESTKY*