AlfalfaGEDB | MsG0280011290.01

M. sativa cultivar ZhongmuNo.1 / MsG0280011290.01

KEGG: -
GO: GO:0016020 GO:0022857 GO:0055085
PFAM: PF00854

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011290.01.T01	XP_003597728.1	76.883	385	39	6	75	410	34	417	0	563
MsG0280011290.01.T01	XP_003597728.1	83.117	77	8	1	411	487	560	631	3.29E-27	127

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011290.01.T01	Q9M817	42.757	428	186	11	75	445	32	457	1.95E-99	314

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011290.01.T01	Q2HU48	76.883	385	39	6	75	410	34	417	0.0	563

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048809.01	MsG0280011290.01	-0.838049	3.622166e-57	4.794570e-54
MsG0180004085.01	MsG0280011290.01	0.814287	1.663878e-51	1.111882e-48
MsG0180005354.01	MsG0280011290.01	0.864943	8.446851e-65	2.699740e-61
MsG0280006906.01	MsG0280011290.01	0.802129	6.494335e-49	3.156299e-46
MsG0280007537.01	MsG0280011290.01	0.815301	9.918215e-52	6.812207e-49
MsG0280011290.01	MsG0380017055.01	0.805129	1.549212e-49	8.131546e-47
MsG0280011290.01	MsG0480022392.01	-0.816551	5.216253e-52	3.707448e-49
MsG0280011290.01	MsG0480023937.01	0.820089	8.245653e-53	6.462258e-50
MsG0280011290.01	MsG0580024581.01	0.801817	7.529639e-49	3.630512e-46
MsG0280011290.01	MsG0580026032.01	0.814483	1.505522e-51	1.011460e-48

Showing 1 to 10 of 16 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011290.01.T01	MTR_2g101640	76.883	385	39	6	75	410	34	417	0.0	563
MsG0280011290.01.T01	MTR_2g101640	83.117	77	8	1	411	487	560	631	3.99e-31	127
MsG0280011290.01.T01	MTR_2g101610	64.341	387	84	7	75	410	38	421	6.39e-155	455
MsG0280011290.01.T01	MTR_2g101610	70.270	74	22	0	411	484	564	637	1.20e-23	104
MsG0280011290.01.T01	MTR_2g101590	63.049	387	89	6	75	410	37	420	3.05e-152	448
MsG0280011290.01.T01	MTR_2g101590	70.270	74	22	0	411	484	563	636	1.29e-23	104
MsG0280011290.01.T01	MTR_4g011280	58.442	385	108	6	75	410	43	424	5.43e-144	426
MsG0280011290.01.T01	MTR_2g101560	60.925	389	94	7	75	410	38	421	9.68e-141	419
MsG0280011290.01.T01	MTR_2g101560	82.432	74	12	1	411	483	564	637	1.42e-29	122
MsG0280011290.01.T01	MTR_1g057460	57.692	390	94	7	75	410	55	427	4.10e-139	412

Showing 1 to 10 of 102 entries

Previous1 2 3 4 5…11Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011290.01.T01	AT1G52190	42.757	428	186	11	75	445	32	457	1.99e-100	314
MsG0280011290.01.T01	AT3G16180	46.036	391	153	12	75	410	34	421	5.98e-98	307
MsG0280011290.01.T01	AT1G69870	28.680	394	223	10	75	413	62	452	5.52e-39	150
MsG0280011290.01.T01	AT1G68570	31.026	390	213	12	75	411	34	420	1.51e-37	145
MsG0280011290.01.T01	AT1G68570	31.105	389	212	12	76	411	5	390	1.87e-37	145
MsG0280011290.01.T01	AT5G28470	29.040	396	219	13	75	414	28	417	1.64e-35	139
MsG0280011290.01.T01	AT1G62200	30.691	391	211	14	75	410	63	448	2.59e-35	139
MsG0280011290.01.T01	AT3G47960	27.735	393	228	12	75	414	72	461	2.96e-35	139
MsG0280011290.01.T01	AT5G62680	27.735	393	222	14	75	410	54	441	6.42e-35	138
MsG0280011290.01.T01	AT5G11570	32.603	365	173	15	75	411	24	343	1.22e-34	135

Showing 1 to 10 of 62 entries

Previous1 2 3 4 5 6 7Next

Find 108 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACCAGCTTGATTAC+TGG	0.321168	2:+82039462	MsG0280011290.01.T01:CDS
AACATGATATTGTATTTCAT+GGG	0.529372	2:+82038111	MsG0280011290.01.T01:CDS
AAGATAATCCCAATAACCAT+AGG	0.503374	2:+82039254	MsG0280011290.01.T01:CDS
ACAGACAGATAGATAGATAA+CGG	0.557789	2:-82037838	None:intergenic
ACGGAGGCGGCCGTGCCGCT+GGG	0.388589	2:-82039093	None:intergenic
ACTTGCAAGGATGGCAAGTT+TGG	0.274733	2:+82038077	MsG0280011290.01.T01:CDS
AGAATATTTCCAAAACCCTA+TGG	0.509252	2:-82039270	None:intergenic
AGACCACCCTTGCGTCTTTG+AGG	0.440202	2:-82037790	None:intergenic
AGATAATCCCAATAACCATA+GGG	0.590293	2:+82039255	MsG0280011290.01.T01:CDS
AGCTAAGAGGGAAACCAGTT+AGG	0.474106	2:+82040415	MsG0280011290.01.T01:CDS

Showing 1 to 10 of 108 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATTCCATCAAATCTTGGT+AGG	+	Chr2:82038694-82038713	MsG0280011290.01.T01:intron	30.0%
AAGATAATCCCAATAACCAT+AGG	+	Chr2:82039254-82039273	MsG0280011290.01.T01:CDS	30.0%
AATGAATATCTAGACATACC+AGG	-	Chr2:82038282-82038301	None:intergenic	30.0%
ACAGACAGATAGATAGATAA+CGG	-	Chr2:82037841-82037860	None:intergenic	30.0%
AGAATATTTCCAAAACCCTA+TGG	-	Chr2:82039273-82039292	None:intergenic	30.0%
AGATAATCCCAATAACCATA+GGG	+	Chr2:82039255-82039274	MsG0280011290.01.T01:CDS	30.0%
AGTGATGAAACTAGTTCAAA+TGG	+	Chr2:82041002-82041021	MsG0280011290.01.T01:CDS	30.0%
ATATACCTACCAAGATTTGA+TGG	-	Chr2:82038702-82038721	None:intergenic	30.0%
ATCAGTCCAAAGATAAGAAT+GGG	+	Chr2:82040438-82040457	MsG0280011290.01.T01:CDS	30.0%
ATCATGATGTCTCTTAACAT+TGG	+	Chr2:82040240-82040259	MsG0280011290.01.T01:CDS	30.0%

Showing 1 to 10 of 228 entries

Previous1 2 3 4 5…23Next

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	82037719	82041124	82037719	ID=MsG0280011290.01;Name=MsG0280011290.01
Chr2	mRNA	82037719	82041124	82037719	ID=MsG0280011290.01.T01;Parent=MsG0280011290.01;Name=MsG0280011290.01.T01;_AED=0.49;_eAED=0.57;_QI=0\|0.2\|0\|1\|0.4\|0.5\|6\|0\|488
Chr2	exon	82037719	82037944	82037719	ID=MsG0280011290.01.T01:exon:12204;Parent=MsG0280011290.01.T01
Chr2	exon	82038067	82038239	82038067	ID=MsG0280011290.01.T01:exon:12205;Parent=MsG0280011290.01.T01
Chr2	exon	82039061	82039299	82039061	ID=MsG0280011290.01.T01:exon:12206;Parent=MsG0280011290.01.T01
Chr2	exon	82039398	82039613	82039398	ID=MsG0280011290.01.T01:exon:12207;Parent=MsG0280011290.01.T01
Chr2	exon	82040092	82040466	82040092	ID=MsG0280011290.01.T01:exon:12208;Parent=MsG0280011290.01.T01
Chr2	exon	82040887	82041124	82040887	ID=MsG0280011290.01.T01:exon:12209;Parent=MsG0280011290.01.T01
Chr2	CDS	82037719	82037944	82037719	ID=MsG0280011290.01.T01:cds;Parent=MsG0280011290.01.T01
Chr2	CDS	82038067	82038239	82038067	ID=MsG0280011290.01.T01:cds;Parent=MsG0280011290.01.T01
Chr2	CDS	82039061	82039299	82039061	ID=MsG0280011290.01.T01:cds;Parent=MsG0280011290.01.T01
Chr2	CDS	82039398	82039613	82039398	ID=MsG0280011290.01.T01:cds;Parent=MsG0280011290.01.T01
Chr2	CDS	82040092	82040466	82040092	ID=MsG0280011290.01.T01:cds;Parent=MsG0280011290.01.T01
Chr2	CDS	82040887	82041124	82040887	ID=MsG0280011290.01.T01:cds;Parent=MsG0280011290.01.T01

Gene Sequence

>MsG0280011290.01.T01

ATGGACAAGAACTTCAACTTTGTTCTGTTGATGATGATGAAATGGTTCCTCAACAAAACATCTCTCAACAACCTCAAAGACGCAAGGGTGGTCTTATCACCATGCCTTTCATCATTGGTCCGTTATCTATCTATCTGTCTGTCTGTCTATCTATTATGCATCACACTATTAAACTACCGAGTCATCCTCGATCTCTCTGACTCAGCAGAGATGGAGGATGACTTAGCTAATGAGGCACTTGCAAGGATGGCAAGTTTGGGACTATTGCCCAACATGATATTGTATTTCATGGGAAGTTACAGGCTTCATCTTGCCAAAGCTACTCAGATTCTTCTCTTATCCTCTGCAGCCAGCATTTCACACCTGTGGTTGGTGCTTTCATTGCAGATTCTTATCTGGGGAATGGGAATGTTGTGGTTAACAGCCATGATCCCAGCGGCACGGCCGCCTCCGTGCAACCATCCAACAAAAGGCTGTAAATCAGCAACAACAGGTCAAATGGCAATGTTACTCTCTGCCTTTGGTCCTCATGTCAATAGGAATGGTGGTCTTTCATGTTCCATTGCATTTGGTGCAGACCAAGTGAATAGAAAAGATAATCCCAATAACCATAGGGTTTTGGAAATATTCTTCAGTTGCAGCACTCATGCTTTTATCTACTATCTGTTTCTTTCTTGCTTCTCCTCTTTATGTCAAGATCACAAAAGAACCAGCTTGATTACTGGTTTTGCACAAGTCACTATTGCTGCTTATAAGAACAGAAAACTTCAATTACCACCTAAGCACTCGCCTCAAATTTACCATCACAAAAAGGACTCAGATCTTGATCTTGTTATTCCAACTGATAAACTAAGGTTTCTGAACAAAGCTTGTGTTATTAAGGATCATGAACAAGATATAGCCGCTGATGGTTCAGCAATAAATCCTTGGAGACTCTGCACAGTAGATCAAGTTGAAGAACTAAAAGCCCTTGTTAGAGTTATTCCATTATGGTCTACAGGGATCATGATGTCTCTTAACATTGGTGGATCATTTGGATTGCTGCAAGCTAAATCCTTAAACAGACATATCACCTCAAACTTTGAAGTACCAGCAGGATCTTTTAGTGTTATCATGGTAGGTTCAATATTTATATGGATAGTACTCTACGACCGCGTTCTTATTCCTCTAGCATCAAAGCTAAGAGGGAAACCAGTTAGGATCAGTCCAAAGATAAGAATGGGAATTGGTTGGGCTTATGGACCTACAGTTGATCAAGTATCTAAGGTGAGTGACGAAAATGATTCAAAGGAGGAAGATTCAACAGAATTCAAGAATGTGAATGCACTATTTGATGATAAGGTTAGTGATGAAACTAGTTCAAATGGGAAAGAGTTAACTGAATTCAAGAATGGTGGTCAGGTTGAGAAAGTAGTCAAGATTAGTGAAGAAAATGGATCAAATGAGGAAGAGTCAACCAAGTATTAA

Protein sequence

>MsG0280011290.01.T01

MDKNFNFVLLMMMKWFLNKTSLNNLKDARVVLSPCLSSLVRYLSICLSVYLLCITLLNYRVILDLSDSAEMEDDLANEALARMASLGLLPNMILYFMGSYRLHLAKATQILLLSSAASISHLWLVLSLQILIWGMGMLWLTAMIPAARPPPCNHPTKGCKSATTGQMAMLLSAFGPHVNRNGGLSCSIAFGADQVNRKDNPNNHRVLEIFFSCSTHAFIYYLFLSCFSSLCQDHKRTSLITGFAQVTIAAYKNRKLQLPPKHSPQIYHHKKDSDLDLVIPTDKLRFLNKACVIKDHEQDIAADGSAINPWRLCTVDQVEELKALVRVIPLWSTGIMMSLNIGGSFGLLQAKSLNRHITSNFEVPAGSFSVIMVGSIFIWIVLYDRVLIPLASKLRGKPVRISPKIRMGIGWAYGPTVDQVSKVSDENDSKEEDSTEFKNVNALFDDKVSDETSSNGKELTEFKNGGQVEKVVKISEENGSNEEESTKY*