AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024581.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024581.01.T01 MTR_5g013420 96.839 791 25 0 1 791 1 791 0.0 1552
MsG0580024581.01.T01 MTR_5g013420 96.839 791 25 0 1 791 1 791 0.0 1552
MsG0580024581.01.T01 MTR_4g010830 62.808 812 186 13 23 819 1 711 0.0 876
MsG0580024581.01.T01 MTR_4g010550 75.714 210 45 2 599 804 1 208 6.20e-100 318
MsG0580024581.01.T01 MTR_3g011440 43.750 240 127 5 567 801 127 363 1.43e-47 180
MsG0580024581.01.T01 MTR_8g042750 40.141 284 144 6 532 798 116 390 4.76e-47 179
MsG0580024581.01.T01 MTR_1g035420 39.655 232 129 5 581 805 158 385 3.35e-44 170
MsG0580024581.01.T01 MTR_8g070070 42.791 215 109 4 617 817 299 513 4.64e-44 171
MsG0580024581.01.T01 MTR_7g088370 41.434 251 135 7 580 822 202 448 1.41e-42 166
MsG0580024581.01.T01 MTR_8g070075 41.475 217 113 4 615 817 290 506 1.54e-42 166
MsG0580024581.01.T01 MTR_7g084090 46.734 199 93 6 603 790 246 442 1.73e-41 162
MsG0580024581.01.T01 MTR_7g084090 46.734 199 93 6 603 790 246 442 3.20e-41 162
MsG0580024581.01.T01 MTR_6g061200 46.032 189 92 4 611 790 192 379 1.33e-40 159
MsG0580024581.01.T01 MTR_8g071030 43.814 194 100 3 618 802 280 473 4.12e-40 159
MsG0580024581.01.T01 MTR_6g061270 44.776 201 97 5 603 790 180 379 7.54e-40 157
MsG0580024581.01.T01 MTR_6g044690 43.367 196 95 4 615 802 109 296 9.68e-40 155
MsG0580024581.01.T01 MTR_1g048950 41.441 222 119 4 576 787 28 248 2.80e-38 151
MsG0580024581.01.T01 MTR_7g445530 41.014 217 102 5 576 786 77 273 2.46e-37 147
MsG0580024581.01.T01 MTR_7g445710 40.553 217 103 5 576 786 77 273 3.25e-37 147
MsG0580024581.01.T01 MTR_0376s0030 39.111 225 111 7 585 801 87 293 6.50e-35 141
MsG0580024581.01.T01 MTR_7g450730 38.393 224 109 6 570 790 68 265 3.11e-34 138
MsG0580024581.01.T01 MTR_1g035400 39.241 237 116 10 581 797 68 296 1.10e-33 137
MsG0580024581.01.T01 MTR_7g445810 38.191 199 94 6 576 766 90 267 6.48e-31 123
MsG0580024581.01.T01 MTR_7g445600 40.606 165 81 3 576 740 73 220 8.47e-30 122
MsG0580024581.01.T01 MTR_2g054460 34.672 274 112 8 581 822 9 247 4.31e-29 122
MsG0580024581.01.T01 MTR_6g043960 35.586 222 101 5 598 802 18 214 3.43e-27 116
MsG0580024581.01.T01 MTR_5g098680 33.333 153 91 3 643 787 267 416 7.78e-15 79.0
MsG0580024581.01.T01 MTR_6g044000 36.735 98 51 3 575 672 19 105 5.05e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024581.01.T01 AT2G22740 59.200 250 90 5 581 819 270 518 2.01e-79 273
MsG0580024581.01.T01 AT2G22740 59.200 250 90 5 581 819 270 518 2.01e-79 273
MsG0580024581.01.T01 AT2G35160 58.590 227 87 3 580 799 270 496 6.62e-76 262
MsG0580024581.01.T01 AT2G35160 58.590 227 87 3 580 799 306 532 1.01e-75 263
MsG0580024581.01.T01 AT2G35160 58.590 227 87 3 580 799 306 532 1.01e-75 263
MsG0580024581.01.T01 AT2G35160 58.590 227 87 3 580 799 306 532 1.01e-75 263
MsG0580024581.01.T01 AT2G35160 58.590 227 87 3 580 799 306 532 1.01e-75 263
MsG0580024581.01.T01 AT5G47150 47.248 218 112 3 575 790 112 328 7.88e-53 187
MsG0580024581.01.T01 AT5G47160 33.691 466 237 17 328 782 3 407 2.24e-51 186
MsG0580024581.01.T01 AT5G47160 33.691 466 237 17 328 782 3 407 2.24e-51 186
MsG0580024581.01.T01 AT5G47160 33.691 466 237 17 328 782 3 407 2.24e-51 186
MsG0580024581.01.T01 AT2G33290 37.209 258 153 4 566 818 134 387 9.28e-44 169
MsG0580024581.01.T01 AT2G33290 37.209 258 153 4 566 818 134 387 9.28e-44 169
MsG0580024581.01.T01 AT2G33290 37.209 258 153 4 566 818 134 387 9.28e-44 169
MsG0580024581.01.T01 AT2G33290 37.209 258 153 4 566 818 134 387 9.28e-44 169
MsG0580024581.01.T01 AT5G04940 44.196 224 116 5 581 798 155 375 1.88e-43 168
MsG0580024581.01.T01 AT5G04940 44.196 224 116 5 581 798 155 375 1.88e-43 168
MsG0580024581.01.T01 AT4G13460 38.583 254 143 6 573 818 137 385 1.42e-41 162
MsG0580024581.01.T01 AT4G13460 38.583 254 143 6 573 818 137 385 1.42e-41 162
MsG0580024581.01.T01 AT1G73100 41.597 238 121 6 569 799 148 374 6.62e-41 160
MsG0580024581.01.T01 AT5G13960 41.379 232 113 7 570 790 91 310 5.51e-39 154
MsG0580024581.01.T01 AT5G13960 47.590 166 77 3 635 790 11 176 3.13e-38 150
MsG0580024581.01.T01 AT2G24740 39.056 233 117 6 569 795 250 463 7.87e-33 136
MsG0580024581.01.T01 AT1G17770 32.906 234 138 6 569 795 167 388 1.20e-28 123
MsG0580024581.01.T01 AT2G05900 34.437 151 90 5 656 798 1 150 9.25e-18 85.5
MsG0580024581.01.T01 AT1G57820 33.117 154 91 4 643 787 277 427 5.94e-15 79.3
MsG0580024581.01.T01 AT1G57820 33.117 154 91 4 643 787 277 427 5.94e-15 79.3
MsG0580024581.01.T01 AT1G57820 32.450 151 93 4 643 787 277 424 3.33e-14 77.0

Find 207 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGATGTTGGTTTAAATT+TGG 0.118788 5:-6582650 None:intergenic
TCAATTGGATGTGCCTATTT+TGG 0.119192 5:+6581853 MsG0580024581.01.T01:CDS
TCAAGTGGATGGGGATATTT+TGG 0.160554 5:+6581721 MsG0580024581.01.T01:CDS
GAACATTCTGAAGAAGAATT+AGG 0.193360 5:+6581263 MsG0580024581.01.T01:CDS
ATGGATGTTGGTTTAAATTT+GGG 0.221824 5:-6582649 None:intergenic
TTTACATAACCACGTGGTTT+TGG 0.228610 5:-6582892 None:intergenic
CGTTCAAGCTTCTGATCTTC+TGG 0.239657 5:-6583372 None:intergenic
TTCAAACTACTTTCGAGTTC+TGG 0.240711 5:-6582550 None:intergenic
GTTAAGAGTGGTGAAGATTT+AGG 0.245357 5:+6581419 MsG0580024581.01.T01:CDS
TGGCCTTCATCGCCAGATTC+AGG 0.250113 5:+6583206 MsG0580024581.01.T01:CDS
AGAATAGAGCTTAATATAAT+TGG 0.267824 5:+6583186 MsG0580024581.01.T01:CDS
CAACTAGTATTGTTGCTTCC+GGG 0.287565 5:+6583268 MsG0580024581.01.T01:CDS
TCTTCGTTATTATCCAAAAT+AGG 0.293857 5:-6581866 None:intergenic
GATTTAGGTGGTGGTGATTC+GGG 0.318391 5:+6581434 MsG0580024581.01.T01:CDS
TGAGTCATATTGGCAGGATA+TGG 0.322593 5:+6583512 MsG0580024581.01.T01:CDS
TGAAGACTGTAGCTTGAAAA+AGG 0.324757 5:+6581676 MsG0580024581.01.T01:CDS
GGGCATGGAAGCTGTGGATA+TGG 0.325224 5:+6581775 MsG0580024581.01.T01:CDS
GGGAAGCCAGTGATGGTAAA+TGG 0.328236 5:+6581284 MsG0580024581.01.T01:CDS
GCAACTAGTATTGTTGCTTC+CGG 0.330626 5:+6583267 MsG0580024581.01.T01:CDS
GGAGACTTTGGATGCGGAAT+TGG 0.341628 5:+6581913 MsG0580024581.01.T01:CDS
TGAAGGAGGCTTTAACTAAA+AGG 0.341984 5:+6582200 MsG0580024581.01.T01:CDS
AGAACCACCTATATTGATAT+TGG 0.345666 5:-6582167 None:intergenic
AAGATCATGGGATCTGTTCC+TGG 0.350847 5:+6583135 MsG0580024581.01.T01:CDS
AAAGGTGTACTAAATCATTC+TGG 0.352831 5:+6582751 MsG0580024581.01.T01:CDS
TTTGATTGAAAAGATGAATT+CGG 0.361033 5:+6581217 None:intergenic
AATCTATACCACCCTGAATC+TGG 0.365878 5:-6583218 None:intergenic
AACATTCTGAAGAAGAATTA+GGG 0.368058 5:+6581264 MsG0580024581.01.T01:CDS
AGATTTAGGTGGTGGTGATT+CGG 0.370179 5:+6581433 MsG0580024581.01.T01:CDS
CCGGAAGAATGTGGACCGTT+TGG 0.370475 5:+6581371 MsG0580024581.01.T01:CDS
CGGTATGGAAACTTCAGATA+TGG 0.371541 5:+6582039 MsG0580024581.01.T01:CDS
TATGGTGTTCACAGCACATA+TGG 0.381418 5:-6583684 None:intergenic
CATGGTCTCATCTCATCAAT+TGG 0.383281 5:+6581838 MsG0580024581.01.T01:CDS
AGAATGATTTAGTACACCTT+TGG 0.384346 5:-6582749 None:intergenic
GATTCTTTCACATTTGACTT+TGG 0.398140 5:-6583045 None:intergenic
TCATTGTCCAATATCAATAT+AGG 0.398722 5:+6582160 MsG0580024581.01.T01:CDS
TTCTACAAACAGCTTGGAAC+AGG 0.402055 5:-6582996 None:intergenic
TCAAACTACTTTCGAGTTCT+GGG 0.404581 5:-6582549 None:intergenic
AAATGACGGACCTGCAGAAC+TGG 0.405443 5:+6582009 MsG0580024581.01.T01:CDS
GAAAGTAGTGCTAGGTTTGA+TGG 0.408534 5:+6582588 MsG0580024581.01.T01:CDS
TGAAGCTTCAAAAGTGGAAT+TGG 0.409850 5:+6581751 MsG0580024581.01.T01:CDS
GTTTCGCTTGCGAAGAAAGC+CGG 0.413635 5:+6583560 MsG0580024581.01.T01:CDS
TCAAATTGATGAGTCTACTT+TGG 0.415306 5:+6581985 MsG0580024581.01.T01:CDS
AAAATCAGCTTCAACAAAGT+TGG 0.420516 5:-6582386 None:intergenic
GCGAGGTCAAGAATTCTGTT+AGG 0.421124 5:+6583421 MsG0580024581.01.T01:CDS
GCCAATCTCATCTCAGTAGA+TGG 0.421747 5:-6582445 None:intergenic
CACCCTGAATCTGGCGATGA+AGG 0.425090 5:-6583209 None:intergenic
AATATCAATATAGGTGGTTC+TGG 0.436908 5:+6582169 MsG0580024581.01.T01:CDS
TCTATGAAGTTGAGTCATAT+TGG 0.437887 5:+6583502 MsG0580024581.01.T01:CDS
GACATAGCTACCTCGCCAAC+TGG 0.438153 5:-6582121 None:intergenic
ATTGGTGGGCATGGAGACTT+TGG 0.440213 5:+6581901 MsG0580024581.01.T01:CDS
GAGTCATATTGGCAGGATAT+GGG 0.443386 5:+6583513 MsG0580024581.01.T01:CDS
AGAAGATCAGAAGCTTGAAC+GGG 0.449548 5:+6583374 MsG0580024581.01.T01:CDS
GGAAGCTGTGGATATGGAAT+TGG 0.449691 5:+6581781 MsG0580024581.01.T01:CDS
GGCCAAGTCAGAATGTCCTT+GGG 0.450886 5:+6582609 MsG0580024581.01.T01:CDS
TCATCACAAACCGACATTGA+TGG 0.458444 5:-6581242 None:intergenic
CGGGTCAACCAGAGCTTGCT+TGG 0.460037 5:+6583580 MsG0580024581.01.T01:CDS
TCTGTTCCTGGGGTTGAAGT+TGG 0.460888 5:+6583147 MsG0580024581.01.T01:CDS
TGGCCAAGTCAGAATGTCCT+TGG 0.468262 5:+6582608 MsG0580024581.01.T01:CDS
GGAAAACATGAACATCGTTA+AGG 0.468416 5:+6582495 MsG0580024581.01.T01:CDS
AGTACCTTCCAAGCAAGCTC+TGG 0.469016 5:-6583588 None:intergenic
GAGTCTCCATTTACCATCAC+TGG 0.471142 5:-6581290 None:intergenic
GGCCTTCATCGCCAGATTCA+GGG 0.471401 5:+6583207 MsG0580024581.01.T01:CDS
GAATTCTGTTAGGGTGATAC+GGG 0.481274 5:+6583431 MsG0580024581.01.T01:CDS
GGCACTGGATAATCATCATC+AGG 0.481375 5:+6582465 MsG0580024581.01.T01:CDS
CAGAAGATCAGAAGCTTGAA+CGG 0.482485 5:+6583373 MsG0580024581.01.T01:CDS
TATGGGGCCACATGGGAAGC+TGG 0.483438 5:+6583530 MsG0580024581.01.T01:CDS
CCAAACGGTCCACATTCTTC+CGG 0.485310 5:-6581371 None:intergenic
ACACTCATCCTGGCTGAGAC+GGG 0.486717 5:-6582287 None:intergenic
AGAATTCTGTTAGGGTGATA+CGG 0.488400 5:+6583430 MsG0580024581.01.T01:CDS
ATCTTATATATCAGAGGCAC+CGG 0.488681 5:+6582096 MsG0580024581.01.T01:CDS
AGAACTCGAAAGTAGTTTGA+AGG 0.490279 5:+6582552 MsG0580024581.01.T01:CDS
ATTTAGTACACCTTTGGACT+TGG 0.490483 5:-6582743 None:intergenic
GTCTCATCTCATCAAGTGGA+TGG 0.491155 5:+6581710 MsG0580024581.01.T01:CDS
GATATGGAATTTACAACAGA+AGG 0.491786 5:+6582055 MsG0580024581.01.T01:CDS
CCGACCAATGCCAGTTCTGC+AGG 0.494283 5:-6582019 None:intergenic
AACTAGTATTGTTGCTTCCG+GGG 0.494402 5:+6583269 MsG0580024581.01.T01:CDS
AGGGAATGCGGTCAAGAAGC+TGG 0.495760 5:+6582411 MsG0580024581.01.T01:CDS
CTTGGTCGTAGTAATTTAAG+TGG 0.500245 5:+6582925 MsG0580024581.01.T01:CDS
TAATGAAGGGGAGAAGATCA+TGG 0.501403 5:+6583122 MsG0580024581.01.T01:CDS
TACTGAGATGAGATTGGCAC+TGG 0.503247 5:+6582450 MsG0580024581.01.T01:CDS
TGGCAGGATATGGGGCCACA+TGG 0.503771 5:+6583522 MsG0580024581.01.T01:CDS
CAACGATGAACCTGCAAAAG+TGG 0.504681 5:+6581613 MsG0580024581.01.T01:CDS
CGCGTTGAAGATATTTCCTA+CGG 0.505475 5:+6583647 MsG0580024581.01.T01:CDS
AAAACTGACATTGGTGGGCA+TGG 0.507583 5:+6581892 MsG0580024581.01.T01:CDS
TTTCGCTTGCGAAGAAAGCC+GGG 0.508175 5:+6583561 MsG0580024581.01.T01:CDS
TAATCATCATCAGGTTAAAG+TGG 0.509315 5:+6582474 MsG0580024581.01.T01:CDS
AAAGGGAGCTATGTTAATGA+AGG 0.510173 5:+6583108 MsG0580024581.01.T01:CDS
AAGGTGTACTAAATCATTCT+GGG 0.513245 5:+6582752 MsG0580024581.01.T01:CDS
AAATTTAAACCAACATCCAT+TGG 0.513515 5:+6582652 MsG0580024581.01.T01:CDS
TGATAGTCCCAACGACGAAA+AGG 0.515728 5:+6581463 MsG0580024581.01.T01:CDS
GCTACCTCGCCAACTGGAGC+CGG 0.515868 5:-6582115 None:intergenic
ATTGGTGGGCGTAGAAGCTA+TGG 0.516134 5:+6581637 MsG0580024581.01.T01:CDS
ACCATCTACTGAGATGAGAT+TGG 0.516227 5:+6582444 MsG0580024581.01.T01:CDS
CTTATCTGATCAAGTGGATG+TGG 0.522415 5:+6581580 MsG0580024581.01.T01:CDS
TGAAGACTGTAGCTTGAGAA+AGG 0.523979 5:+6581808 MsG0580024581.01.T01:CDS
CGAGGTCAAGAATTCTGTTA+GGG 0.527113 5:+6583422 MsG0580024581.01.T01:CDS
TGAAGTTGAGTCATATTGGC+AGG 0.528849 5:+6583506 MsG0580024581.01.T01:CDS
CAATGCTCCCCGTCTCAGCC+AGG 0.529270 5:+6582279 MsG0580024581.01.T01:CDS
ACTTTCCGACGCTTAAACCT+AGG 0.530593 5:-6581329 None:intergenic
AGCTTCAAAAGTGGAATTGG+TGG 0.531376 5:+6581754 MsG0580024581.01.T01:CDS
AGATCATGGGATCTGTTCCT+GGG 0.531698 5:+6583136 MsG0580024581.01.T01:CDS
TCAACCAGAGCTTGCTTGGA+AGG 0.533430 5:+6583584 MsG0580024581.01.T01:CDS
AAGGGAGCTATGTTAATGAA+GGG 0.535402 5:+6583109 MsG0580024581.01.T01:CDS
CCTAGCACTACTTTCCTGCC+TGG 0.535459 5:-6582580 None:intergenic
GCTCCTTTAGACACTCATCC+TGG 0.536997 5:-6582297 None:intergenic
AAAAGTGGAATTGGTGGGCA+TGG 0.537948 5:+6581760 MsG0580024581.01.T01:CDS
TGAACCTGCAAAAGTGGTAT+TGG 0.538930 5:+6581619 MsG0580024581.01.T01:CDS
TAACGATGAAGCTTCAAAAG+TGG 0.544439 5:+6581745 MsG0580024581.01.T01:CDS
GATACAAAACTGACATTGGT+GGG 0.544785 5:+6581887 MsG0580024581.01.T01:CDS
AAAGCTTTCTACAAACAGCT+TGG 0.545465 5:-6583002 None:intergenic
TGGATGTTGGTTTAAATTTG+GGG 0.545850 5:-6582648 None:intergenic
CTCATCTCATCAAGTGGATG+GGG 0.546998 5:+6581712 MsG0580024581.01.T01:CDS
CAACTATTGTTGATCCGCCT+AGG 0.552035 5:+6581312 MsG0580024581.01.T01:CDS
CGAAGATACAAAACTGACAT+TGG 0.553321 5:+6581883 MsG0580024581.01.T01:CDS
TCTCATCTCATCAAGTGGAT+GGG 0.553872 5:+6581711 MsG0580024581.01.T01:CDS
GTTTGAAGGTCTCACCAGGC+AGG 0.555243 5:+6582566 MsG0580024581.01.T01:CDS
TTTAAACCAACATCCATTGG+TGG 0.555528 5:+6582655 MsG0580024581.01.T01:CDS
CATGAACATCGTTAAGGTCG+AGG 0.556379 5:+6582501 MsG0580024581.01.T01:CDS
TCTGTACCACCAATGGATGT+TGG 0.560078 5:-6582661 None:intergenic
TATATTGATATTGGACAATG+AGG 0.560906 5:-6582158 None:intergenic
CAGCCAGGATGAGTGTCTAA+AGG 0.561581 5:+6582294 MsG0580024581.01.T01:CDS
AGAACTGGCATTGGTCGGTA+TGG 0.564148 5:+6582024 MsG0580024581.01.T01:CDS
AAATTCTAGTTCTGATGACA+TGG 0.567262 5:+6582801 MsG0580024581.01.T01:CDS
TTCTGGTGCTTGTATGAAGG+AGG 0.567602 5:+6582186 MsG0580024581.01.T01:CDS
TGGTTCTGGTGCTTGTATGA+AGG 0.569125 5:+6582183 MsG0580024581.01.T01:CDS
ATGAGAGTGACTCAGTGGCC+CGG 0.569197 5:+6582950 MsG0580024581.01.T01:CDS
CAAGCAAGCTCTGGTTGACC+CGG 0.569213 5:-6583579 None:intergenic
CCTGTCATCTGTACCACCAA+TGG 0.569944 5:-6582668 None:intergenic
GACACTCATCCTGGCTGAGA+CGG 0.572210 5:-6582288 None:intergenic
CCATTGGTGGTACAGATGAC+AGG 0.575959 5:+6582668 MsG0580024581.01.T01:CDS
ACTAGTATTGTTGCTTCCGG+GGG 0.578670 5:+6583270 MsG0580024581.01.T01:CDS
AAGTGGCTGTAGTTTGAAGA+AGG 0.580199 5:+6581544 MsG0580024581.01.T01:CDS
AGGGAGCTATGTTAATGAAG+GGG 0.580705 5:+6583110 MsG0580024581.01.T01:CDS
TGCTGACGGTACGAGTGTTG+AGG 0.581967 5:+6581397 MsG0580024581.01.T01:CDS
ATTGGTGGGCATGGAAGCTG+TGG 0.583994 5:+6581769 MsG0580024581.01.T01:CDS
GGGCATGGAGACTTTGGATG+CGG 0.586754 5:+6581907 MsG0580024581.01.T01:CDS
TGTGGTCTCATCTCATCAAG+TGG 0.587074 5:+6581706 MsG0580024581.01.T01:CDS
CGGACCTGCAGAACTGGCAT+TGG 0.588611 5:+6582015 MsG0580024581.01.T01:CDS
GGCAGGATATGGGGCCACAT+GGG 0.589278 5:+6583523 MsG0580024581.01.T01:CDS
AGATACAAAACTGACATTGG+TGG 0.589399 5:+6581886 MsG0580024581.01.T01:CDS
ATGGTGTTCACAGCACATAT+GGG 0.589870 5:-6583683 None:intergenic
TCCCCAAGGACATTCTGACT+TGG 0.593577 5:-6582611 None:intergenic
GGACCGTTTGGCTCTGCTGA+CGG 0.593688 5:+6581383 MsG0580024581.01.T01:CDS
GAGTCTACTTTGGCAAATGA+CGG 0.594825 5:+6581995 MsG0580024581.01.T01:CDS
ACCTGCAAAAGTGGTATTGG+TGG 0.595437 5:+6581622 MsG0580024581.01.T01:CDS
CAATTGATGAGATGAGACCA+TGG 0.596287 5:-6581837 None:intergenic
AAGCAACAATACTAGTTGCA+AGG 0.598665 5:-6583263 None:intergenic
AGTAGTTTGAAGGTCTCACC+AGG 0.598759 5:+6582562 MsG0580024581.01.T01:CDS
TCAGAGGCACCGGCTCCAGT+TGG 0.598975 5:+6582106 MsG0580024581.01.T01:CDS
GGATGTTGGTTTAAATTTGG+GGG 0.601362 5:-6582647 None:intergenic
AGTCATATTGGCAGGATATG+GGG 0.602342 5:+6583514 MsG0580024581.01.T01:CDS
CCAGGCAGGAAAGTAGTGCT+AGG 0.602466 5:+6582580 MsG0580024581.01.T01:CDS
AATGAAGGGGAGAAGATCAT+GGG 0.604075 5:+6583123 MsG0580024581.01.T01:CDS
TCATCACCAACTTCAACCCC+AGG 0.604148 5:-6583153 None:intergenic
AGTGGTGAAGATTTAGGTGG+TGG 0.605730 5:+6581425 MsG0580024581.01.T01:CDS
AGATTTATCTTATATATCAG+AGG 0.608018 5:+6582090 MsG0580024581.01.T01:CDS
CGGGGATCTGAATCAGCGGA+TGG 0.611571 5:+6583450 MsG0580024581.01.T01:CDS
TGTGGTCTTATCTGATCAAG+TGG 0.612824 5:+6581574 MsG0580024581.01.T01:CDS
GCTTCAAAAGTGGAATTGGT+GGG 0.613307 5:+6581755 MsG0580024581.01.T01:CDS
TGGTGGTACAGATGACAGGA+AGG 0.614455 5:+6582672 MsG0580024581.01.T01:CDS
AGAATTAGGGAAGCCAGTGA+TGG 0.615410 5:+6581277 MsG0580024581.01.T01:CDS
AATTGATGAGATGAGACCAT+GGG 0.617974 5:-6581836 None:intergenic
GTACCGTCAGCAGAGCCAAA+CGG 0.618132 5:-6581386 None:intergenic
ATCCGCCTAGGTTTAAGCGT+CGG 0.618613 5:+6581324 MsG0580024581.01.T01:CDS
AGCAAGATATATGTTTACGA+TGG 0.618907 5:+6583477 MsG0580024581.01.T01:CDS
GGCACCGGCTCCAGTTGGCG+AGG 0.619867 5:+6582111 MsG0580024581.01.T01:CDS
CTTGAGAAAGGAAGATCCCA+TGG 0.621289 5:+6581820 MsG0580024581.01.T01:CDS
ATGAACATCGTTAAGGTCGA+GGG 0.623227 5:+6582502 MsG0580024581.01.T01:CDS
GAATTCGGAGCCATCAATGT+CGG 0.623601 5:+6581232 MsG0580024581.01.T01:CDS
CACTCATCCTGGCTGAGACG+GGG 0.624068 5:-6582286 None:intergenic
TTATCTGATCAAGTGGATGT+GGG 0.624073 5:+6581581 MsG0580024581.01.T01:CDS
GCGTTGAAGATATTTCCTAC+GGG 0.625923 5:+6583648 MsG0580024581.01.T01:CDS
CAAATGTGAAAGAATCAAAG+AGG 0.632909 5:+6583052 MsG0580024581.01.T01:CDS
TTGTCCAATATCAATATAGG+TGG 0.635936 5:+6582163 MsG0580024581.01.T01:CDS
TGCTTTGAAGAATAGTAGCG+AGG 0.636465 5:+6583404 MsG0580024581.01.T01:CDS
CCTGCAGAACTGGCATTGGT+CGG 0.637297 5:+6582019 MsG0580024581.01.T01:CDS
TAAGTCATCAGCATAGCCCC+CGG 0.637423 5:-6583286 None:intergenic
ACTTGATCAGATAAGACCAC+AGG 0.642209 5:-6581572 None:intergenic
ACTTGATGAGATGAGACCAC+AGG 0.643420 5:-6581704 None:intergenic
AAAACTGCGACCAAGTCCAA+AGG 0.643866 5:+6582733 MsG0580024581.01.T01:CDS
CATGGGTCAATTAGTAACAC+GGG 0.644532 5:+6582819 MsG0580024581.01.T01:CDS
TTTGAAGAAGGAGGATCCTG+TGG 0.645117 5:+6581556 MsG0580024581.01.T01:CDS
AAATGTGAAAGAATCAAAGA+GGG 0.651541 5:+6583053 MsG0580024581.01.T01:CDS
ACGAGTGTTGAGGTTAAGAG+TGG 0.661350 5:+6581407 MsG0580024581.01.T01:CDS
GACACTGTTGAACAAACAAG+TGG 0.662787 5:+6581527 MsG0580024581.01.T01:CDS
GATCATGGGATCTGTTCCTG+GGG 0.665855 5:+6583137 MsG0580024581.01.T01:CDS
GCCAAGTCAGAATGTCCTTG+GGG 0.668770 5:+6582610 MsG0580024581.01.T01:CDS
ACATGGGTCAATTAGTAACA+CGG 0.669242 5:+6582818 MsG0580024581.01.T01:CDS
AAGAGTGGTGAAGATTTAGG+TGG 0.670342 5:+6581422 MsG0580024581.01.T01:CDS
CTTAAATTACTACGACCAAG+AGG 0.670569 5:-6582922 None:intergenic
CAGTGGCCCGGAATAAAGTG+AGG 0.675048 5:+6582962 MsG0580024581.01.T01:CDS
AATTCTAGTTCTGATGACAT+GGG 0.681067 5:+6582802 MsG0580024581.01.T01:CDS
GGTGGTACAGATGACAGGAA+GGG 0.684498 5:+6582673 MsG0580024581.01.T01:CDS
TTGATATATACAGGGCAGGG+TGG 0.688777 5:+6583324 MsG0580024581.01.T01:CDS
TGGCTGTAGTTTGAAGAAGG+AGG 0.691363 5:+6581547 MsG0580024581.01.T01:CDS
GATACGGGGATCTGAATCAG+CGG 0.692287 5:+6583446 MsG0580024581.01.T01:CDS
TTCCGACGCTTAAACCTAGG+CGG 0.695004 5:-6581326 None:intergenic
CCTGCAAAAGTGGTATTGGT+GGG 0.696602 5:+6581623 MsG0580024581.01.T01:CDS
TGGTCATGAGAGTGACTCAG+TGG 0.696808 5:+6582945 MsG0580024581.01.T01:CDS
GAAGATCAGAAGCTTGAACG+GGG 0.698030 5:+6583375 MsG0580024581.01.T01:CDS
AAAAGTGTCCCAAAACCACG+TGG 0.710733 5:+6582883 MsG0580024581.01.T01:CDS
GCATTGCGTCCACATAAACG+TGG 0.716479 5:-6582262 None:intergenic
TTATAAACCAGCTTCCCATG+TGG 0.718258 5:-6583537 None:intergenic
GAACAAATATCAGATCCCCA+AGG 0.723725 5:-6582625 None:intergenic
CTTCATCGCCAGATTCAGGG+TGG 0.729437 5:+6583210 MsG0580024581.01.T01:CDS
AAAACATTTACATAACCACG+TGG 0.753070 5:-6582898 None:intergenic
AATTCTGTTAGGGTGATACG+GGG 0.761052 5:+6583432 MsG0580024581.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAGATAAATCTTGTTTTA+CGG - Chr5:6582083-6582102 None:intergenic 15.0%
!! AGAATAGAGCTTAATATAAT+TGG + Chr5:6583186-6583205 MsG0580024581.01.T01:CDS 20.0%
!! AGATTTATCTTATATATCAG+AGG + Chr5:6582090-6582109 MsG0580024581.01.T01:CDS 20.0%
!! TAAAAAGTTCAAAAAAGAGA+AGG + Chr5:6583620-6583639 MsG0580024581.01.T01:CDS 20.0%
!! TTATATGAAGCAAAAAAACA+AGG + Chr5:6583239-6583258 MsG0580024581.01.T01:CDS 20.0%
!!! AAGTGTTTGTTATTTTCATT+AGG - Chr5:6582862-6582881 None:intergenic 20.0%
!!! TTTTCTCTTTTCTTTTTCAA+CGG - Chr5:6582784-6582803 None:intergenic 20.0%
! AAATGTGAAAGAATCAAAGA+GGG + Chr5:6583053-6583072 MsG0580024581.01.T01:CDS 25.0%
! AAATTTAAACCAACATCCAT+TGG + Chr5:6582652-6582671 MsG0580024581.01.T01:CDS 25.0%
! ACAAGCTTCAAAAATACTTA+AGG + Chr5:6583083-6583102 MsG0580024581.01.T01:CDS 25.0%
! CAAAAATACTTAAGGAGAAA+GGG + Chr5:6583091-6583110 MsG0580024581.01.T01:CDS 25.0%
! TATATTGATATTGGACAATG+AGG - Chr5:6582161-6582180 None:intergenic 25.0%
! TCAAAAATACTTAAGGAGAA+AGG + Chr5:6583090-6583109 MsG0580024581.01.T01:CDS 25.0%
! TCATTGTCCAATATCAATAT+AGG + Chr5:6582160-6582179 MsG0580024581.01.T01:CDS 25.0%
! TCTTCGTTATTATCCAAAAT+AGG - Chr5:6581869-6581888 None:intergenic 25.0%
!! AACATTCTGAAGAAGAATTA+GGG + Chr5:6581264-6581283 MsG0580024581.01.T01:CDS 25.0%
!! TATGTAAATGTTTTTCCTCT+TGG + Chr5:6582907-6582926 MsG0580024581.01.T01:CDS 25.0%
!! TCATTGAACTCAAAATTTTG+AGG - Chr5:6581491-6581510 None:intergenic 25.0%
!!! AATGGATGTTGGTTTAAATT+TGG - Chr5:6582653-6582672 None:intergenic 25.0%
!!! ATGGATGTTGGTTTAAATTT+GGG - Chr5:6582652-6582671 None:intergenic 25.0%
!!! CAGATGTTTTGATATATACA+GGG + Chr5:6583316-6583335 MsG0580024581.01.T01:CDS 25.0%
AAAACATTTACATAACCACG+TGG - Chr5:6582901-6582920 None:intergenic 30.0%
AAAATCAGCTTCAACAAAGT+TGG - Chr5:6582389-6582408 None:intergenic 30.0%
AAGGTGTACTAAATCATTCT+GGG + Chr5:6582752-6582771 MsG0580024581.01.T01:CDS 30.0%
AATATCAATATAGGTGGTTC+TGG + Chr5:6582169-6582188 MsG0580024581.01.T01:CDS 30.0%
AGAACCACCTATATTGATAT+TGG - Chr5:6582170-6582189 None:intergenic 30.0%
AGAATGATTTAGTACACCTT+TGG - Chr5:6582752-6582771 None:intergenic 30.0%
AGCAAGATATATGTTTACGA+TGG + Chr5:6583477-6583496 MsG0580024581.01.T01:CDS 30.0%
CAAATGTGAAAGAATCAAAG+AGG + Chr5:6583052-6583071 MsG0580024581.01.T01:CDS 30.0%
GATATGGAATTTACAACAGA+AGG + Chr5:6582055-6582074 MsG0580024581.01.T01:CDS 30.0%
TAATCATCATCAGGTTAAAG+TGG + Chr5:6582474-6582493 MsG0580024581.01.T01:CDS 30.0%
TCAAATTGATGAGTCTACTT+TGG + Chr5:6581985-6582004 MsG0580024581.01.T01:CDS 30.0%
TCTATGAAGTTGAGTCATAT+TGG + Chr5:6583502-6583521 MsG0580024581.01.T01:CDS 30.0%
TTGTCCAATATCAATATAGG+TGG + Chr5:6582163-6582182 MsG0580024581.01.T01:CDS 30.0%
! AAAGGTGTACTAAATCATTC+TGG + Chr5:6582751-6582770 MsG0580024581.01.T01:CDS 30.0%
! ATGTTTTCCTCACTTTATTC+CGG - Chr5:6582972-6582991 None:intergenic 30.0%
! GAACATTCTGAAGAAGAATT+AGG + Chr5:6581263-6581282 MsG0580024581.01.T01:CDS 30.0%
! GATTCTTTCACATTTGACTT+TGG - Chr5:6583048-6583067 None:intergenic 30.0%
!! AAATTCTAGTTCTGATGACA+TGG + Chr5:6582801-6582820 MsG0580024581.01.T01:CDS 30.0%
!! AATTCTAGTTCTGATGACAT+GGG + Chr5:6582802-6582821 MsG0580024581.01.T01:CDS 30.0%
!! TGGATGTTGGTTTAAATTTG+GGG - Chr5:6582651-6582670 None:intergenic 30.0%
!! TTGTTGAAGCTGATTTTGAA+GGG + Chr5:6582392-6582411 MsG0580024581.01.T01:CDS 30.0%
!! TTTGTTGAAGCTGATTTTGA+AGG + Chr5:6582391-6582410 MsG0580024581.01.T01:CDS 30.0%
!!! GCAGATGTTTTGATATATAC+AGG + Chr5:6583315-6583334 MsG0580024581.01.T01:CDS 30.0%
!!! TGTTATTTTCTGCTTCTTGT+AGG - Chr5:6582354-6582373 None:intergenic 30.0%
AAAGCTTTCTACAAACAGCT+TGG - Chr5:6583005-6583024 None:intergenic 35.0%
AAAGGGAGCTATGTTAATGA+AGG + Chr5:6583108-6583127 MsG0580024581.01.T01:CDS 35.0%
AAGCAACAATACTAGTTGCA+AGG - Chr5:6583266-6583285 None:intergenic 35.0%
AAGGGAGCTATGTTAATGAA+GGG + Chr5:6583109-6583128 MsG0580024581.01.T01:CDS 35.0%
AATTGATGAGATGAGACCAT+GGG - Chr5:6581839-6581858 None:intergenic 35.0%
ACATGGGTCAATTAGTAACA+CGG + Chr5:6582818-6582837 MsG0580024581.01.T01:CDS 35.0%
AGAACTCGAAAGTAGTTTGA+AGG + Chr5:6582552-6582571 MsG0580024581.01.T01:CDS 35.0%
AGAATTCTGTTAGGGTGATA+CGG + Chr5:6583430-6583449 MsG0580024581.01.T01:CDS 35.0%
AGATACAAAACTGACATTGG+TGG + Chr5:6581886-6581905 MsG0580024581.01.T01:CDS 35.0%
ATTTAGTACACCTTTGGACT+TGG - Chr5:6582746-6582765 None:intergenic 35.0%
CGAAGATACAAAACTGACAT+TGG + Chr5:6581883-6581902 MsG0580024581.01.T01:CDS 35.0%
CTTAAATTACTACGACCAAG+AGG - Chr5:6582925-6582944 None:intergenic 35.0%
CTTGGTCGTAGTAATTTAAG+TGG + Chr5:6582925-6582944 MsG0580024581.01.T01:CDS 35.0%
GATACAAAACTGACATTGGT+GGG + Chr5:6581887-6581906 MsG0580024581.01.T01:CDS 35.0%
GGAAAACATGAACATCGTTA+AGG + Chr5:6582495-6582514 MsG0580024581.01.T01:CDS 35.0%
GTTAAGAGTGGTGAAGATTT+AGG + Chr5:6581419-6581438 MsG0580024581.01.T01:CDS 35.0%
TAACGATGAAGCTTCAAAAG+TGG + Chr5:6581745-6581764 MsG0580024581.01.T01:CDS 35.0%
TGAAGACTGTAGCTTGAAAA+AGG + Chr5:6581676-6581695 MsG0580024581.01.T01:CDS 35.0%
TGAAGCTTCAAAAGTGGAAT+TGG + Chr5:6581751-6581770 MsG0580024581.01.T01:CDS 35.0%
TTATCTGATCAAGTGGATGT+GGG + Chr5:6581581-6581600 MsG0580024581.01.T01:CDS 35.0%
TTTAAACCAACATCCATTGG+TGG + Chr5:6582655-6582674 MsG0580024581.01.T01:CDS 35.0%
! AGAGATTTTCCACGTTTATG+TGG + Chr5:6582253-6582272 MsG0580024581.01.T01:CDS 35.0%
! ATCTTATATATCAGAGGCAC+CGG + Chr5:6582096-6582115 MsG0580024581.01.T01:CDS 35.0%
! TCAATTGGATGTGCCTATTT+TGG + Chr5:6581853-6581872 MsG0580024581.01.T01:CDS 35.0%
! TGAAGGAGGCTTTAACTAAA+AGG + Chr5:6582200-6582219 MsG0580024581.01.T01:CDS 35.0%
! TGTTTGTAGAAAGCTTTTGC+AGG + Chr5:6583008-6583027 MsG0580024581.01.T01:CDS 35.0%
! TGTTTTCCTCACTTTATTCC+GGG - Chr5:6582971-6582990 None:intergenic 35.0%
! TTACATAACCACGTGGTTTT+GGG - Chr5:6582894-6582913 None:intergenic 35.0%
! TTTACATAACCACGTGGTTT+TGG - Chr5:6582895-6582914 None:intergenic 35.0%
!! GGATGTTGGTTTAAATTTGG+GGG - Chr5:6582650-6582669 None:intergenic 35.0%
!! GTTTTGATATATACAGGGCA+GGG + Chr5:6583321-6583340 MsG0580024581.01.T01:CDS 35.0%
!! TCAAACTACTTTCGAGTTCT+GGG - Chr5:6582552-6582571 None:intergenic 35.0%
!! TTCAAACTACTTTCGAGTTC+TGG - Chr5:6582553-6582572 None:intergenic 35.0%
!!! TGTTTTGATATATACAGGGC+AGG + Chr5:6583320-6583339 MsG0580024581.01.T01:CDS 35.0%
AAGAGTGGTGAAGATTTAGG+TGG + Chr5:6581422-6581441 MsG0580024581.01.T01:CDS 40.0%
AAGTGGCTGTAGTTTGAAGA+AGG + Chr5:6581544-6581563 MsG0580024581.01.T01:CDS 40.0%
AATCTATACCACCCTGAATC+TGG - Chr5:6583221-6583240 None:intergenic 40.0%
AATGAAGGGGAGAAGATCAT+GGG + Chr5:6583123-6583142 MsG0580024581.01.T01:CDS 40.0%
AATTCTGTTAGGGTGATACG+GGG + Chr5:6583432-6583451 MsG0580024581.01.T01:CDS 40.0%
ACCATCTACTGAGATGAGAT+TGG + Chr5:6582444-6582463 MsG0580024581.01.T01:CDS 40.0%
ACTTGATCAGATAAGACCAC+AGG - Chr5:6581575-6581594 None:intergenic 40.0%
AGAAGATCAGAAGCTTGAAC+GGG + Chr5:6583374-6583393 MsG0580024581.01.T01:CDS 40.0%
AGCTTCAAAAGTGGAATTGG+TGG + Chr5:6581754-6581773 MsG0580024581.01.T01:CDS 40.0%
AGGGAGCTATGTTAATGAAG+GGG + Chr5:6583110-6583129 MsG0580024581.01.T01:CDS 40.0%
AGTCATATTGGCAGGATATG+GGG + Chr5:6583514-6583533 MsG0580024581.01.T01:CDS 40.0%
ATGAACATCGTTAAGGTCGA+GGG + Chr5:6582502-6582521 MsG0580024581.01.T01:CDS 40.0%
CAATTGATGAGATGAGACCA+TGG - Chr5:6581840-6581859 None:intergenic 40.0%
CAGAAGATCAGAAGCTTGAA+CGG + Chr5:6583373-6583392 MsG0580024581.01.T01:CDS 40.0%
CATGGGTCAATTAGTAACAC+GGG + Chr5:6582819-6582838 MsG0580024581.01.T01:CDS 40.0%
CATGGTCTCATCTCATCAAT+TGG + Chr5:6581838-6581857 MsG0580024581.01.T01:CDS 40.0%
CGAGGTCAAGAATTCTGTTA+GGG + Chr5:6583422-6583441 MsG0580024581.01.T01:CDS 40.0%
CGCGTTGAAGATATTTCCTA+CGG + Chr5:6583647-6583666 MsG0580024581.01.T01:CDS 40.0%
CGGTATGGAAACTTCAGATA+TGG + Chr5:6582039-6582058 MsG0580024581.01.T01:CDS 40.0%
CTTATCTGATCAAGTGGATG+TGG + Chr5:6581580-6581599 MsG0580024581.01.T01:CDS 40.0%
CTTGAAAAAGGAAGATCCTG+TGG + Chr5:6581688-6581707 MsG0580024581.01.T01:CDS 40.0%
GAAAGTAGTGCTAGGTTTGA+TGG + Chr5:6582588-6582607 MsG0580024581.01.T01:CDS 40.0%
GAACAAATATCAGATCCCCA+AGG - Chr5:6582628-6582647 None:intergenic 40.0%
GAATTCTGTTAGGGTGATAC+GGG + Chr5:6583431-6583450 MsG0580024581.01.T01:CDS 40.0%
GACACTGTTGAACAAACAAG+TGG + Chr5:6581527-6581546 MsG0580024581.01.T01:CDS 40.0%
GAGTCATATTGGCAGGATAT+GGG + Chr5:6583513-6583532 MsG0580024581.01.T01:CDS 40.0%
GAGTCTACTTTGGCAAATGA+CGG + Chr5:6581995-6582014 MsG0580024581.01.T01:CDS 40.0%
GCGTTGAAGATATTTCCTAC+GGG + Chr5:6583648-6583667 MsG0580024581.01.T01:CDS 40.0%
GCTTCAAAAGTGGAATTGGT+GGG + Chr5:6581755-6581774 MsG0580024581.01.T01:CDS 40.0%
TAATGAAGGGGAGAAGATCA+TGG + Chr5:6583122-6583141 MsG0580024581.01.T01:CDS 40.0%
TCATCACAAACCGACATTGA+TGG - Chr5:6581245-6581264 None:intergenic 40.0%
TCTCATCTCATCAAGTGGAT+GGG + Chr5:6581711-6581730 MsG0580024581.01.T01:CDS 40.0%
TGAACCTGCAAAAGTGGTAT+TGG + Chr5:6581619-6581638 MsG0580024581.01.T01:CDS 40.0%
TGAAGACTGTAGCTTGAGAA+AGG + Chr5:6581808-6581827 MsG0580024581.01.T01:CDS 40.0%
TGAAGTTGAGTCATATTGGC+AGG + Chr5:6583506-6583525 MsG0580024581.01.T01:CDS 40.0%
TGAGTCATATTGGCAGGATA+TGG + Chr5:6583512-6583531 MsG0580024581.01.T01:CDS 40.0%
TTATAAACCAGCTTCCCATG+TGG - Chr5:6583540-6583559 None:intergenic 40.0%
TTCTACAAACAGCTTGGAAC+AGG - Chr5:6582999-6583018 None:intergenic 40.0%
! AACTAGTATTGTTGCTTCCG+GGG + Chr5:6583269-6583288 MsG0580024581.01.T01:CDS 40.0%
! AGATTTAGGTGGTGGTGATT+CGG + Chr5:6581433-6581452 MsG0580024581.01.T01:CDS 40.0%
! CAACTAGTATTGTTGCTTCC+GGG + Chr5:6583268-6583287 MsG0580024581.01.T01:CDS 40.0%
! GCAACTAGTATTGTTGCTTC+CGG + Chr5:6583267-6583286 MsG0580024581.01.T01:CDS 40.0%
! TAGAAAGCTTTTGCAGGAAG+CGG + Chr5:6583014-6583033 MsG0580024581.01.T01:CDS 40.0%
! TCAAGTGGATGGGGATATTT+TGG + Chr5:6581721-6581740 MsG0580024581.01.T01:CDS 40.0%
! TTCTGCTGTTCGTGATTTTC+CGG + Chr5:6581352-6581371 MsG0580024581.01.T01:CDS 40.0%
!! AGCTGATTTTGAAGGGAATG+CGG + Chr5:6582399-6582418 MsG0580024581.01.T01:CDS 40.0%
!! AGTTGATTTTTATGCCCACC+TGG + Chr5:6582702-6582721 MsG0580024581.01.T01:CDS 40.0%
!! TGCTTTGAAGAATAGTAGCG+AGG + Chr5:6583404-6583423 MsG0580024581.01.T01:CDS 40.0%
!! TGTGGTCTTATCTGATCAAG+TGG + Chr5:6581574-6581593 MsG0580024581.01.T01:CDS 40.0%
!!! AACGCTGCAACTTTTTTACG+AGG - Chr5:6582232-6582251 None:intergenic 40.0%
!!! CTCTTTTCTTTTTCAACGGC+TGG - Chr5:6582780-6582799 None:intergenic 40.0%
AAAACTGCGACCAAGTCCAA+AGG + Chr5:6582733-6582752 MsG0580024581.01.T01:CDS 45.0%
AAGATCATGGGATCTGTTCC+TGG + Chr5:6583135-6583154 MsG0580024581.01.T01:CDS 45.0%
ACTTGATGAGATGAGACCAC+AGG - Chr5:6581707-6581726 None:intergenic 45.0%
ACTTTCCGACGCTTAAACCT+AGG - Chr5:6581332-6581351 None:intergenic 45.0%
AGAATTAGGGAAGCCAGTGA+TGG + Chr5:6581277-6581296 MsG0580024581.01.T01:CDS 45.0%
AGATCATGGGATCTGTTCCT+GGG + Chr5:6583136-6583155 MsG0580024581.01.T01:CDS 45.0%
AGTAGTTTGAAGGTCTCACC+AGG + Chr5:6582562-6582581 MsG0580024581.01.T01:CDS 45.0%
AGTGGTGAAGATTTAGGTGG+TGG + Chr5:6581425-6581444 MsG0580024581.01.T01:CDS 45.0%
CAACGATGAACCTGCAAAAG+TGG + Chr5:6581613-6581632 MsG0580024581.01.T01:CDS 45.0%
CAACTATTGTTGATCCGCCT+AGG + Chr5:6581312-6581331 MsG0580024581.01.T01:CDS 45.0%
CATGAACATCGTTAAGGTCG+AGG + Chr5:6582501-6582520 MsG0580024581.01.T01:CDS 45.0%
CGTTCAAGCTTCTGATCTTC+TGG - Chr5:6583375-6583394 None:intergenic 45.0%
CTCATCTCATCAAGTGGATG+GGG + Chr5:6581712-6581731 MsG0580024581.01.T01:CDS 45.0%
CTTGAGAAAGGAAGATCCCA+TGG + Chr5:6581820-6581839 MsG0580024581.01.T01:CDS 45.0%
GAAGATCAGAAGCTTGAACG+GGG + Chr5:6583375-6583394 MsG0580024581.01.T01:CDS 45.0%
GAATTCGGAGCCATCAATGT+CGG + Chr5:6581232-6581251 MsG0580024581.01.T01:CDS 45.0%
GAGTCTCCATTTACCATCAC+TGG - Chr5:6581293-6581312 None:intergenic 45.0%
GCCAATCTCATCTCAGTAGA+TGG - Chr5:6582448-6582467 None:intergenic 45.0%
GCGAGGTCAAGAATTCTGTT+AGG + Chr5:6583421-6583440 MsG0580024581.01.T01:CDS 45.0%
GGAAGCTGTGGATATGGAAT+TGG + Chr5:6581781-6581800 MsG0580024581.01.T01:CDS 45.0%
GTCTCATCTCATCAAGTGGA+TGG + Chr5:6581710-6581729 MsG0580024581.01.T01:CDS 45.0%
TACTGAGATGAGATTGGCAC+TGG + Chr5:6582450-6582469 MsG0580024581.01.T01:CDS 45.0%
TCTGTACCACCAATGGATGT+TGG - Chr5:6582664-6582683 None:intergenic 45.0%
TGATAGTCCCAACGACGAAA+AGG + Chr5:6581463-6581482 MsG0580024581.01.T01:CDS 45.0%
TGGCTGTAGTTTGAAGAAGG+AGG + Chr5:6581547-6581566 MsG0580024581.01.T01:CDS 45.0%
TGTGGTCTCATCTCATCAAG+TGG + Chr5:6581706-6581725 MsG0580024581.01.T01:CDS 45.0%
TTCTGGTGCTTGTATGAAGG+AGG + Chr5:6582186-6582205 MsG0580024581.01.T01:CDS 45.0%
TTGATATATACAGGGCAGGG+TGG + Chr5:6583324-6583343 MsG0580024581.01.T01:CDS 45.0%
TTTGAAGAAGGAGGATCCTG+TGG + Chr5:6581556-6581575 MsG0580024581.01.T01:CDS 45.0%
! AAAACTGACATTGGTGGGCA+TGG + Chr5:6581892-6581911 MsG0580024581.01.T01:CDS 45.0%
! AAAAGTGGAATTGGTGGGCA+TGG + Chr5:6581760-6581779 MsG0580024581.01.T01:CDS 45.0%
! ACCTGCAAAAGTGGTATTGG+TGG + Chr5:6581622-6581641 MsG0580024581.01.T01:CDS 45.0%
! ACTAGTATTGTTGCTTCCGG+GGG + Chr5:6583270-6583289 MsG0580024581.01.T01:CDS 45.0%
! ATTTTTATGCCCACCTGGAC+AGG + Chr5:6582707-6582726 MsG0580024581.01.T01:CDS 45.0%
! CACTTTTGCAGGTTCATCGT+TGG - Chr5:6581615-6581634 None:intergenic 45.0%
! CGTGATTTTCCGGAAGAATG+TGG + Chr5:6581362-6581381 MsG0580024581.01.T01:CDS 45.0%
! GATTTAGGTGGTGGTGATTC+GGG + Chr5:6581434-6581453 MsG0580024581.01.T01:CDS 45.0%
! GGCACTGGATAATCATCATC+AGG + Chr5:6582465-6582484 MsG0580024581.01.T01:CDS 45.0%
! GGGAATTTTCTCTTTCCCGT+AGG - Chr5:6583666-6583685 None:intergenic 45.0%
! TGAGGATCCTTTTCGTCGTT+GGG - Chr5:6581473-6581492 None:intergenic 45.0%
! TTGAGGATCCTTTTCGTCGT+TGG - Chr5:6581474-6581493 None:intergenic 45.0%
!! AAAAGTGTCCCAAAACCACG+TGG + Chr5:6582883-6582902 MsG0580024581.01.T01:CDS 45.0%
!! ACGAGTGTTGAGGTTAAGAG+TGG + Chr5:6581407-6581426 MsG0580024581.01.T01:CDS 45.0%
!! CCTGCAAAAGTGGTATTGGT+GGG + Chr5:6581623-6581642 MsG0580024581.01.T01:CDS 45.0%
!! TGGTTCTGGTGCTTGTATGA+AGG + Chr5:6582183-6582202 MsG0580024581.01.T01:CDS 45.0%
!!! AGTTTTAGACCTGTCCAGGT+GGG - Chr5:6582719-6582738 None:intergenic 45.0%
!!! GCTGCAACTTTTTTACGAGG+AGG - Chr5:6582229-6582248 None:intergenic 45.0%
AGTACCTTCCAAGCAAGCTC+TGG - Chr5:6583591-6583610 None:intergenic 50.0%
ATCCGCCTAGGTTTAAGCGT+CGG + Chr5:6581324-6581343 MsG0580024581.01.T01:CDS 50.0%
CAGCCAGGATGAGTGTCTAA+AGG + Chr5:6582294-6582313 MsG0580024581.01.T01:CDS 50.0%
CCAAACGGTCCACATTCTTC+CGG - Chr5:6581374-6581393 None:intergenic 50.0%
CCTGTCATCTGTACCACCAA+TGG - Chr5:6582671-6582690 None:intergenic 50.0%
GATACGGGGATCTGAATCAG+CGG + Chr5:6583446-6583465 MsG0580024581.01.T01:CDS 50.0%
GATCATGGGATCTGTTCCTG+GGG + Chr5:6583137-6583156 MsG0580024581.01.T01:CDS 50.0%
GCATTGCGTCCACATAAACG+TGG - Chr5:6582265-6582284 None:intergenic 50.0%
GCCAAGTCAGAATGTCCTTG+GGG + Chr5:6582610-6582629 MsG0580024581.01.T01:CDS 50.0%
GCTCCTTTAGACACTCATCC+TGG - Chr5:6582300-6582319 None:intergenic 50.0%
GGAGACTTTGGATGCGGAAT+TGG + Chr5:6581913-6581932 MsG0580024581.01.T01:CDS 50.0%
GGCCAAGTCAGAATGTCCTT+GGG + Chr5:6582609-6582628 MsG0580024581.01.T01:CDS 50.0%
GGGAAGCCAGTGATGGTAAA+TGG + Chr5:6581284-6581303 MsG0580024581.01.T01:CDS 50.0%
GGTGGTACAGATGACAGGAA+GGG + Chr5:6582673-6582692 MsG0580024581.01.T01:CDS 50.0%
GTTTCGCTTGCGAAGAAAGC+CGG + Chr5:6583560-6583579 MsG0580024581.01.T01:CDS 50.0%
TAAGTCATCAGCATAGCCCC+CGG - Chr5:6583289-6583308 None:intergenic 50.0%
TCATCACCAACTTCAACCCC+AGG - Chr5:6583156-6583175 None:intergenic 50.0%
TCCCCAAGGACATTCTGACT+TGG - Chr5:6582614-6582633 None:intergenic 50.0%
TCTGTTCCTGGGGTTGAAGT+TGG + Chr5:6583147-6583166 MsG0580024581.01.T01:CDS 50.0%
TGGCCAAGTCAGAATGTCCT+TGG + Chr5:6582608-6582627 MsG0580024581.01.T01:CDS 50.0%
TGGTCATGAGAGTGACTCAG+TGG + Chr5:6582945-6582964 MsG0580024581.01.T01:CDS 50.0%
TGGTGGTACAGATGACAGGA+AGG + Chr5:6582672-6582691 MsG0580024581.01.T01:CDS 50.0%
TTCCGACGCTTAAACCTAGG+CGG - Chr5:6581329-6581348 None:intergenic 50.0%
TTTCGCTTGCGAAGAAAGCC+GGG + Chr5:6583561-6583580 MsG0580024581.01.T01:CDS 50.0%
! ATTGGTGGGCATGGAGACTT+TGG + Chr5:6581901-6581920 MsG0580024581.01.T01:CDS 50.0%
! ATTGGTGGGCGTAGAAGCTA+TGG + Chr5:6581637-6581656 MsG0580024581.01.T01:CDS 50.0%
! CCATTGGTGGTACAGATGAC+AGG + Chr5:6582668-6582687 MsG0580024581.01.T01:CDS 50.0%
! TCAACCAGAGCTTGCTTGGA+AGG + Chr5:6583584-6583603 MsG0580024581.01.T01:CDS 50.0%
!! AAATGACGGACCTGCAGAAC+TGG + Chr5:6582009-6582028 MsG0580024581.01.T01:CDS 50.0%
!! AGAACTGGCATTGGTCGGTA+TGG + Chr5:6582024-6582043 MsG0580024581.01.T01:CDS 50.0%
!! CCCACCAATACCACTTTTGC+AGG - Chr5:6581626-6581645 None:intergenic 50.0%
!!! CAGTTTTAGACCTGTCCAGG+TGG - Chr5:6582720-6582739 None:intergenic 50.0%
!!! TCGCAGTTTTAGACCTGTCC+AGG - Chr5:6582723-6582742 None:intergenic 50.0%
ACACTCATCCTGGCTGAGAC+GGG - Chr5:6582290-6582309 None:intergenic 55.0%
AGGGAATGCGGTCAAGAAGC+TGG + Chr5:6582411-6582430 MsG0580024581.01.T01:CDS 55.0%
ATGAGAGTGACTCAGTGGCC+CGG + Chr5:6582950-6582969 MsG0580024581.01.T01:CDS 55.0%
CACCCTGAATCTGGCGATGA+AGG - Chr5:6583212-6583231 None:intergenic 55.0%
CAGTGGCCCGGAATAAAGTG+AGG + Chr5:6582962-6582981 MsG0580024581.01.T01:CDS 55.0%
CCAGGCAGGAAAGTAGTGCT+AGG + Chr5:6582580-6582599 MsG0580024581.01.T01:CDS 55.0%
CCGGAAGAATGTGGACCGTT+TGG + Chr5:6581371-6581390 MsG0580024581.01.T01:CDS 55.0%
CCTAGCACTACTTTCCTGCC+TGG - Chr5:6582583-6582602 None:intergenic 55.0%
CTTCATCGCCAGATTCAGGG+TGG + Chr5:6583210-6583229 MsG0580024581.01.T01:CDS 55.0%
GACACTCATCCTGGCTGAGA+CGG - Chr5:6582291-6582310 None:intergenic 55.0%
GACATAGCTACCTCGCCAAC+TGG - Chr5:6582124-6582143 None:intergenic 55.0%
GGCCTTCATCGCCAGATTCA+GGG + Chr5:6583207-6583226 MsG0580024581.01.T01:CDS 55.0%
GGGCATGGAAGCTGTGGATA+TGG + Chr5:6581775-6581794 MsG0580024581.01.T01:CDS 55.0%
GGGCATGGAGACTTTGGATG+CGG + Chr5:6581907-6581926 MsG0580024581.01.T01:CDS 55.0%
GTACCGTCAGCAGAGCCAAA+CGG - Chr5:6581389-6581408 None:intergenic 55.0%
GTTTGAAGGTCTCACCAGGC+AGG + Chr5:6582566-6582585 MsG0580024581.01.T01:CDS 55.0%
TGGCCTTCATCGCCAGATTC+AGG + Chr5:6583206-6583225 MsG0580024581.01.T01:CDS 55.0%
! ATTGGTGGGCATGGAAGCTG+TGG + Chr5:6581769-6581788 MsG0580024581.01.T01:CDS 55.0%
! CAAGCAAGCTCTGGTTGACC+CGG - Chr5:6583582-6583601 None:intergenic 55.0%
! TGCTGACGGTACGAGTGTTG+AGG + Chr5:6581397-6581416 MsG0580024581.01.T01:CDS 55.0%
!! CCTGCAGAACTGGCATTGGT+CGG + Chr5:6582019-6582038 MsG0580024581.01.T01:CDS 55.0%
CACTCATCCTGGCTGAGACG+GGG - Chr5:6582289-6582308 None:intergenic 60.0%
CCGACCAATGCCAGTTCTGC+AGG - Chr5:6582022-6582041 None:intergenic 60.0%
CGGACCTGCAGAACTGGCAT+TGG + Chr5:6582015-6582034 MsG0580024581.01.T01:CDS 60.0%
CGGGGATCTGAATCAGCGGA+TGG + Chr5:6583450-6583469 MsG0580024581.01.T01:CDS 60.0%
GGCAGGATATGGGGCCACAT+GGG + Chr5:6583523-6583542 MsG0580024581.01.T01:CDS 60.0%
TATGGGGCCACATGGGAAGC+TGG + Chr5:6583530-6583549 MsG0580024581.01.T01:CDS 60.0%
TGGCAGGATATGGGGCCACA+TGG + Chr5:6583522-6583541 MsG0580024581.01.T01:CDS 60.0%
! CGGGTCAACCAGAGCTTGCT+TGG + Chr5:6583580-6583599 MsG0580024581.01.T01:CDS 60.0%
!! GGACCGTTTGGCTCTGCTGA+CGG + Chr5:6581383-6581402 MsG0580024581.01.T01:CDS 60.0%
CAATGCTCCCCGTCTCAGCC+AGG + Chr5:6582279-6582298 MsG0580024581.01.T01:CDS 65.0%
GCTACCTCGCCAACTGGAGC+CGG - Chr5:6582118-6582137 None:intergenic 65.0%
!! TCAGAGGCACCGGCTCCAGT+TGG + Chr5:6582106-6582125 MsG0580024581.01.T01:CDS 65.0%
!! GGCACCGGCTCCAGTTGGCG+AGG + Chr5:6582111-6582130 MsG0580024581.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 6581230 6583698 6581230 ID=MsG0580024581.01;Name=MsG0580024581.01
Chr5 mRNA 6581230 6583698 6581230 ID=MsG0580024581.01.T01;Parent=MsG0580024581.01;Name=MsG0580024581.01.T01;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|822
Chr5 exon 6581230 6583698 6581230 ID=MsG0580024581.01.T01:exon:2506;Parent=MsG0580024581.01.T01
Chr5 CDS 6581230 6583698 6581230 ID=MsG0580024581.01.T01:cds;Parent=MsG0580024581.01.T01
Gene Sequence

>MsG0580024581.01.T01

ATGAATTCGGAGCCATCAATGTCGGTTTGTGATGAACATTCTGAAGAAGAATTAGGGAAGCCAGTGATGGTAAATGGAGACTCAACTATTGTTGATCCGCCTAGGTTTAAGCGTCGGAAAGTTTCTGCTGTTCGTGATTTTCCGGAAGAATGTGGACCGTTTGGCTCTGCTGACGGTACGAGTGTTGAGGTTAAGAGTGGTGAAGATTTAGGTGGTGGTGATTCGGGTGAAGCTGATAGTCCCAACGACGAAAAGGATCCTCAAAATTTTGAGTTCAATGAAGATTTGTTTGTTGCAGACACTGTTGAACAAACAAGTGGCTGTAGTTTGAAGAAGGAGGATCCTGTGGTCTTATCTGATCAAGTGGATGTGGGTAGTTTTGCCAACGATGAACCTGCAAAAGTGGTATTGGTGGGCGTAGAAGCTATGGATATTAGTTTTGAAACTGAAGACTGTAGCTTGAAAAAGGAAGATCCTGTGGTCTCATCTCATCAAGTGGATGGGGATATTTTGGTTAACGATGAAGCTTCAAAAGTGGAATTGGTGGGCATGGAAGCTGTGGATATGGAATTGGAAACTGAAGACTGTAGCTTGAGAAAGGAAGATCCCATGGTCTCATCTCATCAATTGGATGTGCCTATTTTGGATAATAACGAAGATACAAAACTGACATTGGTGGGCATGGAGACTTTGGATGCGGAATTGGCAACTGAAAGCTGTAGTTTGAAGAACGAAAATGCAGCGATCTTATCTTATCAAATTGATGAGTCTACTTTGGCAAATGACGGACCTGCAGAACTGGCATTGGTCGGTATGGAAACTTCAGATATGGAATTTACAACAGAAGGCTCCGTAAAACAAGATTTATCTTATATATCAGAGGCACCGGCTCCAGTTGGCGAGGTAGCTATGTCTGATAACTCAAAATCCTCATTGTCCAATATCAATATAGGTGGTTCTGGTGCTTGTATGAAGGAGGCTTTAACTAAAAGGTATCCTCCTCGTAAAAAAGTTGCAGCGTTAAGAGATTTTCCACGTTTATGTGGACGCAATGCTCCCCGTCTCAGCCAGGATGAGTGTCTAAAGGAGCTCGCTTCTTTGAAAGAAGTTGCAGCTACTGACCTACAAGAAGCAGAAAATAACAAAAGAAAGTTTGCCAACTTTGTTGAAGCTGATTTTGAAGGGAATGCGGTCAAGAAGCTGGATGTAGCTGAACCATCTACTGAGATGAGATTGGCACTGGATAATCATCATCAGGTTAAAGTGGAAAACATGAACATCGTTAAGGTCGAGGGAACATCAGAGCTAGATATTGATTACCCAGAACTCGAAAGTAGTTTGAAGGTCTCACCAGGCAGGAAAGTAGTGCTAGGTTTGATGGCCAAGTCAGAATGTCCTTGGGGATCTGATATTTGTTCCCCCAAATTTAAACCAACATCCATTGGTGGTACAGATGACAGGAAGGGAAAGAAAGTTGATTTTTATGCCCACCTGGACAGGTCTAAAACTGCGACCAAGTCCAAAGGTGTACTAAATCATTCTGGGCACCAGCCGTTGAAAAAGAAAAGAGAAAATTCTAGTTCTGATGACATGGGTCAATTAGTAACACGGGAGAAGAATTCTCTAGATCCTAATGAAAATAACAAACACTTTAAAAGTGTCCCAAAACCACGTGGTTATGTAAATGTTTTTCCTCTTGGTCGTAGTAATTTAAGTGGTCATGAGAGTGACTCAGTGGCCCGGAATAAAGTGAGGAAAACATTGCGCCTGTTCCAAGCTGTTTGTAGAAAGCTTTTGCAGGAAGCGGAAGCAAAACCAAAGTCAAATGTGAAAGAATCAAAGAGGGTTGATTTACAAGCTTCAAAAATACTTAAGGAGAAAGGGAGCTATGTTAATGAAGGGGAGAAGATCATGGGATCTGTTCCTGGGGTTGAAGTTGGTGATGAATTTCAATACAGAATAGAGCTTAATATAATTGGCCTTCATCGCCAGATTCAGGGTGGTATAGATTATATGAAGCAAAAAAACAAGGTCCTTGCAACTAGTATTGTTGCTTCCGGGGGCTATGCTGATGACTTAGATAATGCAGATGTTTTGATATATACAGGGCAGGGTGGAAATGTGATGAGCAGTGATAAAGAGCCAGAAGATCAGAAGCTTGAACGGGGCAATCTTGCTTTGAAGAATAGTAGCGAGGTCAAGAATTCTGTTAGGGTGATACGGGGATCTGAATCAGCGGATGGAAAAAGCAAGATATATGTTTACGATGGACTCTATGAAGTTGAGTCATATTGGCAGGATATGGGGCCACATGGGAAGCTGGTTTATAAGTTTCGCTTGCGAAGAAAGCCGGGTCAACCAGAGCTTGCTTGGAAGGTACTGAAGAAATCTAAAAAGTTCAAAAAAGAGAAGGTGTACGCGTTGAAGATATTTCCTACGGGAAAGAGAAAATTCCCATATGTGCTGTGA

Protein sequence

>MsG0580024581.01.T01

MNSEPSMSVCDEHSEEELGKPVMVNGDSTIVDPPRFKRRKVSAVRDFPEECGPFGSADGTSVEVKSGEDLGGGDSGEADSPNDEKDPQNFEFNEDLFVADTVEQTSGCSLKKEDPVVLSDQVDVGSFANDEPAKVVLVGVEAMDISFETEDCSLKKEDPVVSSHQVDGDILVNDEASKVELVGMEAVDMELETEDCSLRKEDPMVSSHQLDVPILDNNEDTKLTLVGMETLDAELATESCSLKNENAAILSYQIDESTLANDGPAELALVGMETSDMEFTTEGSVKQDLSYISEAPAPVGEVAMSDNSKSSLSNINIGGSGACMKEALTKRYPPRKKVAALRDFPRLCGRNAPRLSQDECLKELASLKEVAATDLQEAENNKRKFANFVEADFEGNAVKKLDVAEPSTEMRLALDNHHQVKVENMNIVKVEGTSELDIDYPELESSLKVSPGRKVVLGLMAKSECPWGSDICSPKFKPTSIGGTDDRKGKKVDFYAHLDRSKTATKSKGVLNHSGHQPLKKKRENSSSDDMGQLVTREKNSLDPNENNKHFKSVPKPRGYVNVFPLGRSNLSGHESDSVARNKVRKTLRLFQAVCRKLLQEAEAKPKSNVKESKRVDLQASKILKEKGSYVNEGEKIMGSVPGVEVGDEFQYRIELNIIGLHRQIQGGIDYMKQKNKVLATSIVASGGYADDLDNADVLIYTGQGGNVMSSDKEPEDQKLERGNLALKNSSEVKNSVRVIRGSESADGKSKIYVYDGLYEVESYWQDMGPHGKLVYKFRLRRKPGQPELAWKVLKKSKKFKKEKVYALKIFPTGKRKFPYVL*