Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022392.01.T01 | XP_013457043.1 | 97.333 | 75 | 2 | 0 | 1 | 75 | 1 | 75 | 1.06E-45 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022392.01.T01 | O65426 | 57.746 | 71 | 20 | 3 | 15 | 76 | 25 | 94 | 1.23E-16 | 72.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022392.01.T01 | A0A072UMQ7 | 97.333 | 75 | 2 | 0 | 1 | 75 | 1 | 75 | 5.07e-46 | 153 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047825.01 | MsG0480022392.01 | -0.806093 | 9.725490e-50 | 5.232495e-47 |
| MsG0080048532.01 | MsG0480022392.01 | 0.828840 | 7.188715e-55 | 7.228477e-52 |
| MsG0080048809.01 | MsG0480022392.01 | 0.875313 | 3.401463e-68 | 1.580777e-64 |
| MsG0080048830.01 | MsG0480022392.01 | -0.816710 | 4.806124e-52 | 3.430853e-49 |
| MsG0180000391.01 | MsG0480022392.01 | -0.800627 | 1.319057e-48 | 6.171344e-46 |
| MsG0180000680.01 | MsG0480022392.01 | -0.802988 | 4.319400e-49 | 2.145613e-46 |
| MsG0180001312.01 | MsG0480022392.01 | -0.816628 | 5.013553e-52 | 3.570999e-49 |
| MsG0180001922.01 | MsG0480022392.01 | -0.800386 | 1.476683e-48 | 6.866874e-46 |
| MsG0180002750.01 | MsG0480022392.01 | 0.801967 | 7.013539e-49 | 3.394404e-46 |
| MsG0180002955.01 | MsG0480022392.01 | -0.819462 | 1.147060e-52 | 8.833161e-50 |
| MsG0180003118.01 | MsG0480022392.01 | 0.838779 | 2.347279e-57 | 3.176842e-54 |
| MsG0180003357.01 | MsG0480022392.01 | -0.820381 | 7.067596e-53 | 5.583804e-50 |
| MsG0180004001.01 | MsG0480022392.01 | -0.803392 | 3.562531e-49 | 1.788140e-46 |
| MsG0180004085.01 | MsG0480022392.01 | -0.815040 | 1.133293e-51 | 7.728848e-49 |
| MsG0180004449.01 | MsG0480022392.01 | -0.809671 | 1.685923e-50 | 9.960606e-48 |
| MsG0180004599.01 | MsG0480022392.01 | -0.809165 | 2.164713e-50 | 1.261779e-47 |
| MsG0180004600.01 | MsG0480022392.01 | -0.809174 | 2.155571e-50 | 1.256744e-47 |
| MsG0180004602.01 | MsG0480022392.01 | -0.807548 | 4.789653e-50 | 2.675338e-47 |
| MsG0180004684.01 | MsG0480022392.01 | -0.813193 | 2.897163e-51 | 1.879313e-48 |
| MsG0180004824.01 | MsG0480022392.01 | -0.800050 | 1.728641e-48 | 7.970005e-46 |
| MsG0180004930.01 | MsG0480022392.01 | -0.812777 | 3.574707e-51 | 2.293098e-48 |
| MsG0180005106.01 | MsG0480022392.01 | -0.819097 | 1.389093e-52 | 1.058874e-49 |
| MsG0180005160.01 | MsG0480022392.01 | -0.853520 | 2.263310e-61 | 4.903910e-58 |
| MsG0180005354.01 | MsG0480022392.01 | -0.889431 | 2.437361e-73 | 1.965744e-69 |
| MsG0180005773.01 | MsG0480022392.01 | -0.823268 | 1.517787e-53 | 1.300554e-50 |
| MsG0180005999.01 | MsG0480022392.01 | -0.801933 | 7.126511e-49 | 3.446258e-46 |
| MsG0280006440.01 | MsG0480022392.01 | -0.814241 | 1.702697e-51 | 1.136439e-48 |
| MsG0280010784.01 | MsG0480022392.01 | -0.838048 | 3.624869e-57 | 4.797971e-54 |
| MsG0280010901.01 | MsG0480022392.01 | -0.804226 | 2.391111e-49 | 1.226113e-46 |
| MsG0280010976.01 | MsG0480022392.01 | -0.832064 | 1.169809e-55 | 1.293191e-52 |
| MsG0280011131.01 | MsG0480022392.01 | -0.808932 | 2.429349e-50 | 1.407084e-47 |
| MsG0280011235.01 | MsG0480022392.01 | -0.827065 | 1.921554e-54 | 1.834948e-51 |
| MsG0280011287.01 | MsG0480022392.01 | -0.839602 | 1.436277e-57 | 1.993415e-54 |
| MsG0280011290.01 | MsG0480022392.01 | -0.816551 | 5.216253e-52 | 3.707448e-49 |
| MsG0280011410.01 | MsG0480022392.01 | -0.826925 | 2.075317e-54 | 1.973859e-51 |
| MsG0380011663.01 | MsG0480022392.01 | -0.804799 | 1.815939e-49 | 9.451098e-47 |
| MsG0380011729.01 | MsG0480022392.01 | -0.815118 | 1.088948e-51 | 7.441779e-49 |
| MsG0380011895.01 | MsG0480022392.01 | -0.806741 | 7.098228e-50 | 3.882790e-47 |
| MsG0380012184.01 | MsG0480022392.01 | -0.823334 | 1.464967e-53 | 1.257625e-50 |
| MsG0380012458.01 | MsG0480022392.01 | -0.801012 | 1.100485e-48 | 5.199679e-46 |
| MsG0380013471.01 | MsG0480022392.01 | -0.814651 | 1.382343e-51 | 9.328794e-49 |
| MsG0380014551.01 | MsG0480022392.01 | 0.849225 | 3.705986e-60 | 6.978646e-57 |
| MsG0380014866.01 | MsG0480022392.01 | -0.832016 | 1.202105e-55 | 1.327045e-52 |
| MsG0380014913.01 | MsG0480022392.01 | -0.802688 | 4.981152e-49 | 2.455621e-46 |
| MsG0480019289.01 | MsG0480022392.01 | -0.840336 | 9.243718e-58 | 1.312484e-54 |
| MsG0480020719.01 | MsG0480022392.01 | -0.810037 | 1.406762e-50 | 8.391447e-48 |
| MsG0480020923.01 | MsG0480022392.01 | -0.800225 | 1.592910e-48 | 7.376942e-46 |
| MsG0480021896.01 | MsG0480022392.01 | 0.813535 | 2.437059e-51 | 1.595747e-48 |
| MsG0480021900.01 | MsG0480022392.01 | -0.807249 | 5.543305e-50 | 3.072452e-47 |
| MsG0480022169.01 | MsG0480022392.01 | -0.803926 | 2.760752e-49 | 1.404962e-46 |
| MsG0480022392.01 | MsG0480022393.01 | 0.948991 | 3.133318e-107 | 6.039456e-102 |
| MsG0480022392.01 | MsG0480022933.01 | -0.824813 | 6.584929e-54 | 5.896476e-51 |
| MsG0480022392.01 | MsG0480023224.01 | -0.803915 | 2.775267e-49 | 1.411937e-46 |
| MsG0480022392.01 | MsG0480023554.01 | -0.808006 | 3.828558e-50 | 2.164291e-47 |
| MsG0480022392.01 | MsG0480023670.01 | -0.807274 | 5.475595e-50 | 3.036914e-47 |
| MsG0480022392.01 | MsG0480023729.01 | -0.839559 | 1.473846e-57 | 2.042696e-54 |
| MsG0480022392.01 | MsG0480023937.01 | -0.843477 | 1.367809e-58 | 2.142675e-55 |
| MsG0480022392.01 | MsG0580024114.01 | -0.834839 | 2.376843e-56 | 2.854716e-53 |
| MsG0480022392.01 | MsG0580024160.01 | -0.802744 | 4.851688e-49 | 2.395230e-46 |
| MsG0480022392.01 | MsG0580024581.01 | -0.844779 | 6.118285e-59 | 9.984753e-56 |
| MsG0480022392.01 | MsG0580025008.01 | -0.802610 | 5.169388e-49 | 2.543337e-46 |
| MsG0480022392.01 | MsG0580025009.01 | -0.805869 | 1.084044e-49 | 5.799212e-47 |
| MsG0480022392.01 | MsG0580025278.01 | -0.809428 | 1.901086e-50 | 1.115922e-47 |
| MsG0480022392.01 | MsG0580025328.01 | -0.831887 | 1.294007e-55 | 1.423254e-52 |
| MsG0480022392.01 | MsG0580025329.01 | -0.803925 | 2.761919e-49 | 1.405526e-46 |
| MsG0480022392.01 | MsG0580025453.01 | -0.811405 | 7.117491e-51 | 4.402097e-48 |
| MsG0480022392.01 | MsG0580025907.01 | -0.806841 | 6.762778e-50 | 3.708858e-47 |
| MsG0480022392.01 | MsG0580026011.01 | -0.800159 | 1.642199e-48 | 7.592286e-46 |
| MsG0480022392.01 | MsG0580026032.01 | -0.800695 | 1.277591e-48 | 5.987542e-46 |
| MsG0480022392.01 | MsG0580026067.01 | -0.852113 | 5.710777e-61 | 1.181045e-57 |
| MsG0480022392.01 | MsG0580029629.01 | -0.802525 | 5.383927e-49 | 2.643059e-46 |
| MsG0480022392.01 | MsG0580029639.01 | -0.829399 | 5.261099e-55 | 5.378688e-52 |
| MsG0480022392.01 | MsG0580029794.01 | -0.802039 | 6.779252e-49 | 3.287133e-46 |
| MsG0480022392.01 | MsG0580029999.01 | 0.812979 | 3.227150e-51 | 2.081323e-48 |
| MsG0480022392.01 | MsG0680031377.01 | 0.836242 | 1.049798e-56 | 1.315408e-53 |
| MsG0480022392.01 | MsG0680031538.01 | -0.802812 | 4.697338e-49 | 2.323140e-46 |
| MsG0480022392.01 | MsG0680034190.01 | -0.801523 | 8.648172e-49 | 4.138972e-46 |
| MsG0480022392.01 | MsG0680034219.01 | -0.800828 | 1.199902e-48 | 5.642574e-46 |
| MsG0480022392.01 | MsG0680034914.01 | -0.822375 | 2.449964e-53 | 2.047092e-50 |
| MsG0480022392.01 | MsG0680035844.01 | -0.812627 | 3.855128e-51 | 2.463364e-48 |
| MsG0480022392.01 | MsG0780035958.01 | -0.813250 | 2.814828e-51 | 1.828710e-48 |
| MsG0480022392.01 | MsG0780036117.01 | -0.806006 | 1.014350e-49 | 5.445556e-47 |
| MsG0480022392.01 | MsG0780036289.01 | -0.830248 | 3.268332e-55 | 3.424739e-52 |
| MsG0480022392.01 | MsG0780036548.01 | -0.841029 | 6.087669e-58 | 8.831010e-55 |
| MsG0480022392.01 | MsG0780036630.01 | -0.825841 | 3.762520e-54 | 3.469260e-51 |
| MsG0480022392.01 | MsG0780036633.01 | -0.806694 | 7.262021e-50 | 3.967499e-47 |
| MsG0480022392.01 | MsG0780036635.01 | -0.840990 | 6.232306e-58 | 9.030556e-55 |
| MsG0480022392.01 | MsG0780036845.01 | -0.807642 | 4.575257e-50 | 2.561814e-47 |
| MsG0480022392.01 | MsG0780038092.01 | -0.845468 | 3.984837e-59 | 6.647302e-56 |
| MsG0480022392.01 | MsG0780038644.01 | -0.853178 | 2.837982e-61 | 6.078494e-58 |
| MsG0480022392.01 | MsG0780038833.01 | -0.801035 | 1.088802e-48 | 5.147420e-46 |
| MsG0480022392.01 | MsG0780039405.01 | -0.817327 | 3.492783e-52 | 2.535881e-49 |
| MsG0480022392.01 | MsG0780039515.01 | 0.817302 | 3.538602e-52 | 2.567343e-49 |
| MsG0480022392.01 | MsG0780039777.01 | -0.832593 | 8.651551e-56 | 9.714750e-53 |
| MsG0480022392.01 | MsG0780039900.01 | -0.802489 | 5.474802e-49 | 2.685258e-46 |
| MsG0480022392.01 | MsG0780040176.01 | -0.847439 | 1.155339e-59 | 2.053603e-56 |
| MsG0480022392.01 | MsG0780040254.01 | -0.803472 | 3.429937e-49 | 1.725122e-46 |
| MsG0480022392.01 | MsG0780040375.01 | 0.855670 | 5.399893e-62 | 1.256373e-58 |
| MsG0480022392.01 | MsG0780040705.01 | 0.810780 | 9.720498e-51 | 5.913301e-48 |
| MsG0480022392.01 | MsG0780040712.01 | -0.803978 | 2.692874e-49 | 1.372206e-46 |
| MsG0480022392.01 | MsG0780040758.01 | -0.825162 | 5.447362e-54 | 4.926627e-51 |
| MsG0480022392.01 | MsG0780041498.01 | -0.822865 | 1.884565e-53 | 1.596674e-50 |
| MsG0480022392.01 | MsG0880042078.01 | -0.814741 | 1.320409e-51 | 8.932422e-49 |
| MsG0480022392.01 | MsG0880042223.01 | -0.815423 | 9.316666e-52 | 6.420753e-49 |
| MsG0480022392.01 | MsG0880042553.01 | 0.817660 | 2.939367e-52 | 2.153641e-49 |
| MsG0480022392.01 | MsG0880042743.01 | -0.873284 | 1.657173e-67 | 7.151603e-64 |
| MsG0480022392.01 | MsG0880043059.01 | -0.803950 | 2.728825e-49 | 1.389556e-46 |
| MsG0480022392.01 | MsG0880043172.01 | -0.805078 | 1.588239e-49 | 8.325161e-47 |
| MsG0480022392.01 | MsG0880043804.01 | -0.821826 | 3.284428e-53 | 2.701576e-50 |
| MsG0480022392.01 | MsG0880044062.01 | 0.834352 | 3.149161e-56 | 3.727637e-53 |
| MsG0480022392.01 | MsG0880044346.01 | -0.832337 | 1.001162e-55 | 1.115549e-52 |
| MsG0480022392.01 | MsG0880044638.01 | -0.809461 | 1.870820e-50 | 1.099071e-47 |
| MsG0480022392.01 | MsG0880045756.01 | -0.800717 | 1.263998e-48 | 5.927227e-46 |
| MsG0480022392.01 | MsG0880046244.01 | -0.837648 | 4.590587e-57 | 6.002499e-54 |
| MsG0480022392.01 | MsG0880046560.01 | -0.811341 | 7.349141e-51 | 4.537213e-48 |
| MsG0480022392.01 | MsG0880046561.01 | -0.839433 | 1.589193e-57 | 2.194385e-54 |
| MsG0480022392.01 | MsG0880046890.01 | -0.818367 | 2.033657e-52 | 1.519409e-49 |
| MsG0480022392.01 | MsG0880047019.01 | -0.813427 | 2.574425e-51 | 1.680684e-48 |
| MsG0480022392.01 | MsG0880047285.01 | 0.823789 | 1.146153e-53 | 9.968178e-51 |
| MsG0480022392.01 | MsG0880047689.01 | 0.816255 | 6.075692e-52 | 4.283858e-49 |
| MsG0380015215.01 | MsG0480022392.01 | 0.862351 | 5.387982e-64 | 1.573045e-60 |
| MsG0380015614.01 | MsG0480022392.01 | -0.841715 | 4.015859e-58 | 5.951192e-55 |
| MsG0380015745.01 | MsG0480022392.01 | -0.807418 | 5.104969e-50 | 2.841906e-47 |
| MsG0380016178.01 | MsG0480022392.01 | 0.806020 | 1.007584e-49 | 5.411001e-47 |
| MsG0380016182.01 | MsG0480022392.01 | -0.819590 | 1.072545e-52 | 8.288738e-50 |
| MsG0380016740.01 | MsG0480022392.01 | -0.802690 | 4.978172e-49 | 2.454232e-46 |
| MsG0380016753.01 | MsG0480022392.01 | -0.811746 | 5.999307e-51 | 3.743922e-48 |
| MsG0380017055.01 | MsG0480022392.01 | -0.824364 | 8.403007e-54 | 7.427077e-51 |
| MsG0380017210.01 | MsG0480022392.01 | -0.822032 | 2.941898e-53 | 2.433917e-50 |
| MsG0380017215.01 | MsG0480022392.01 | -0.836451 | 9.288261e-57 | 1.170995e-53 |
| MsG0380017229.01 | MsG0480022392.01 | -0.849177 | 3.821844e-60 | 7.185810e-57 |
| MsG0380017265.01 | MsG0480022392.01 | 0.835322 | 1.794917e-56 | 2.187567e-53 |
| MsG0380017322.01 | MsG0480022392.01 | -0.806827 | 6.808530e-50 | 3.732528e-47 |
| MsG0380017401.01 | MsG0480022392.01 | -0.812018 | 5.234309e-51 | 3.290425e-48 |
| MsG0380017512.01 | MsG0480022392.01 | -0.826095 | 3.273033e-54 | 3.039606e-51 |
| MsG0380017528.01 | MsG0480022392.01 | -0.805892 | 1.071595e-49 | 5.735910e-47 |
| MsG0380017551.01 | MsG0480022392.01 | 0.842223 | 2.948664e-58 | 4.440399e-55 |
| MsG0380017914.01 | MsG0480022392.01 | 0.821906 | 3.146306e-53 | 2.593849e-50 |
| MsG0480018321.01 | MsG0480022392.01 | -0.808632 | 2.815626e-50 | 1.617977e-47 |
| MsG0280006462.01 | MsG0480022392.01 | -0.826029 | 3.394831e-54 | 3.146866e-51 |
| MsG0280006583.01 | MsG0480022392.01 | -0.809048 | 2.293708e-50 | 1.332740e-47 |
| MsG0280006669.01 | MsG0480022392.01 | -0.809808 | 1.575541e-50 | 9.341797e-48 |
| MsG0280006753.01 | MsG0480022392.01 | 0.800482 | 1.411850e-48 | 6.581132e-46 |
| MsG0280006906.01 | MsG0480022392.01 | -0.855402 | 6.463992e-62 | 1.490698e-58 |
| MsG0280006935.01 | MsG0480022392.01 | -0.838584 | 2.636061e-57 | 3.546751e-54 |
| MsG0280007109.01 | MsG0480022392.01 | -0.803214 | 3.879656e-49 | 1.938382e-46 |
| MsG0280007390.01 | MsG0480022392.01 | 0.822917 | 1.833077e-53 | 1.555321e-50 |
| MsG0280007537.01 | MsG0480022392.01 | -0.836924 | 7.034295e-57 | 8.995077e-54 |
| MsG0280007585.01 | MsG0480022392.01 | -0.805803 | 1.118981e-49 | 5.975893e-47 |
| MsG0280007691.01 | MsG0480022392.01 | -0.844476 | 7.384340e-59 | 1.193549e-55 |
| MsG0280007743.01 | MsG0480022392.01 | 0.800649 | 1.305090e-48 | 6.109592e-46 |
| MsG0280007775.01 | MsG0480022392.01 | -0.812982 | 3.223658e-51 | 2.079197e-48 |
| MsG0280007776.01 | MsG0480022392.01 | -0.800013 | 1.758443e-48 | 8.099807e-46 |
| MsG0280007826.01 | MsG0480022392.01 | -0.802772 | 4.788209e-49 | 2.365597e-46 |
| MsG0280007864.01 | MsG0480022392.01 | 0.832095 | 1.149032e-55 | 1.271322e-52 |
| MsG0280007984.01 | MsG0480022392.01 | -0.804117 | 2.520019e-49 | 1.288657e-46 |
| MsG0280008295.01 | MsG0480022392.01 | -0.829516 | 4.928288e-55 | 5.055293e-52 |
| MsG0280009598.01 | MsG0480022392.01 | -0.820760 | 5.784635e-53 | 4.618215e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022392.01.T01 | MTR_4g088850 | 97.333 | 75 | 2 | 0 | 1 | 75 | 1 | 75 | 1.29e-49 | 153 |
| MsG0480022392.01.T01 | MTR_4g088850 | 97.333 | 75 | 2 | 0 | 1 | 75 | 1 | 75 | 9.33e-49 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022392.01.T01 | AT4G21610 | 57.746 | 71 | 20 | 3 | 15 | 76 | 25 | 94 | 1.26e-17 | 72.8 |
| MsG0480022392.01.T01 | AT4G21610 | 57.746 | 71 | 20 | 3 | 15 | 76 | 25 | 94 | 2.39e-17 | 71.6 |
Find 31 sgRNAs with CRISPR-Local
Find 54 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCGTCTTCTTTGTTTACT+AGG | 0.247921 | 4:-72006577 | None:intergenic |
| GGCCGTGGGCGTTGCGGTGG+GGG | 0.301669 | 4:-72006629 | None:intergenic |
| TGGCCGTGGGCGTTGCGGTG+GGG | 0.306898 | 4:-72006630 | None:intergenic |
| GGTGGCCGTGGGCGTTGCGG+TGG | 0.333387 | 4:-72006632 | None:intergenic |
| AGTGACGGTGGCGGTGGCCG+TGG | 0.335089 | 4:-72006644 | None:intergenic |
| GCATGAACATTTGACATGTT+TGG | 0.343047 | 4:-72006978 | None:intergenic |
| GTGGCCGTGGGCGTTGCGGT+GGG | 0.370495 | 4:-72006631 | None:intergenic |
| CTTCTTTGTTTACTAGGTGT+TGG | 0.400108 | 4:-72006571 | None:intergenic |
| CTAATACAATGTTGACTGTC+TGG | 0.430906 | 4:-72007003 | None:intergenic |
| GTGACGGTGGCGGTGGCCGT+GGG | 0.451108 | 4:-72006643 | None:intergenic |
| GATGGGAGTGACGGTGGCGG+TGG | 0.475419 | 4:-72006650 | None:intergenic |
| ATAGGTTGCCAACCAGGTGG+CGG | 0.493264 | 4:-72006605 | None:intergenic |
| TGTAGTGTGTGAAGAAGTAA+CGG | 0.499517 | 4:+72006519 | None:intergenic |
| GGCGGTGGCCGTGGGCGTTG+CGG | 0.501640 | 4:-72006635 | None:intergenic |
| ACAGTCAACATTGTATTAGA+AGG | 0.509196 | 4:+72007007 | MsG0480022392.01.T01:CDS |
| TAGGTTGCCAACCAGGTGGC+GGG | 0.511813 | 4:-72006604 | None:intergenic |
| CATTTGACATGTTTGGCACC+TGG | 0.517148 | 4:-72006971 | None:intergenic |
| CGCCTGCTTTCGTATCCACC+AGG | 0.522323 | 4:+72006953 | MsG0480022392.01.T01:CDS |
| CACCTGGTGGATACGAAAGC+AGG | 0.543193 | 4:-72006955 | None:intergenic |
| CCGGATGGGAGTGACGGTGG+CGG | 0.550715 | 4:-72006653 | None:intergenic |
| ACGACGGCCCGCCACCTGGT+TGG | 0.559468 | 4:+72006597 | MsG0480022392.01.T01:CDS |
| CCGCCACCGTCACTCCCATC+CGG | 0.560200 | 4:+72006653 | MsG0480022392.01.T01:CDS |
| GACGACGACGGCCCGCCACC+TGG | 0.561082 | 4:+72006593 | MsG0480022392.01.T01:CDS |
| GTAGTGTGTGAAGAAGTAAC+GGG | 0.584958 | 4:+72006520 | MsG0480022392.01.T01:five_prime_UTR |
| AACTGACCGGATGGGAGTGA+CGG | 0.591272 | 4:-72006659 | None:intergenic |
| TAAATAGCAACTGACCGGAT+GGG | 0.614535 | 4:-72006667 | None:intergenic |
| TGACCGGATGGGAGTGACGG+TGG | 0.636305 | 4:-72006656 | None:intergenic |
| TTGACATGTTTGGCACCTGG+TGG | 0.642814 | 4:-72006968 | None:intergenic |
| GGAATAGGTTGCCAACCAGG+TGG | 0.649831 | 4:-72006608 | None:intergenic |
| CTGGTGGATACGAAAGCAGG+CGG | 0.684251 | 4:-72006952 | None:intergenic |
| GTAAACAAAGAAGACGACGA+CGG | 0.734106 | 4:+72006581 | MsG0480022392.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CCATAAAAGGTTAAAACTAA+AGG | - | Chr4:72006844-72006863 | None:intergenic | 25.0% |
| ! | GAGAAAAAAAGAGAAGTAAT+AGG | - | Chr4:72006714-72006733 | None:intergenic | 25.0% |
| !!! | CCTTTAGTTTTAACCTTTTA+TGG | + | Chr4:72006841-72006860 | MsG0480022392.01.T01:intron | 25.0% |
| !!! | TCAAATGAATTGGTTTTTTG+TGG | + | Chr4:72006865-72006884 | MsG0480022392.01.T01:intron | 25.0% |
| AACAAAAGCTGTGGAAAAAA+GGG | + | Chr4:72006779-72006798 | MsG0480022392.01.T01:intron | 30.0% | |
| ACAGTCAACATTGTATTAGA+AGG | + | Chr4:72007007-72007026 | MsG0480022392.01.T01:CDS | 30.0% | |
| AGACATGTTCATGAGAAAAA+AGG | - | Chr4:72007041-72007060 | None:intergenic | 30.0% | |
| ATGAATAAATAGCAACTGAC+CGG | - | Chr4:72006675-72006694 | None:intergenic | 30.0% | |
| CAATTCATTTGAGCCATAAA+AGG | - | Chr4:72006857-72006876 | None:intergenic | 30.0% | |
| ! | CTTTTATGGCTCAAATGAAT+TGG | + | Chr4:72006855-72006874 | MsG0480022392.01.T01:intron | 30.0% |
| !! | AAGCTCGTAGCTTTAATATT+TGG | + | Chr4:72006734-72006753 | MsG0480022392.01.T01:intron | 30.0% |
| !! | AGCTCGTAGCTTTAATATTT+GGG | + | Chr4:72006735-72006754 | MsG0480022392.01.T01:intron | 30.0% |
| !! | GGTTCAATTATTTCTGAAAG+AGG | + | Chr4:72006756-72006775 | MsG0480022392.01.T01:intron | 30.0% |
| ACAAAAGCTGTGGAAAAAAG+GGG | + | Chr4:72006780-72006799 | MsG0480022392.01.T01:intron | 35.0% | |
| GAACAAAAGCTGTGGAAAAA+AGG | + | Chr4:72006778-72006797 | MsG0480022392.01.T01:intron | 35.0% | |
| GCATGAACATTTGACATGTT+TGG | - | Chr4:72006981-72007000 | None:intergenic | 35.0% | |
| TTTGATACAGTTGTGTGAAC+AGG | + | Chr4:72006899-72006918 | MsG0480022392.01.T01:intron | 35.0% | |
| ! | CTAATACAATGTTGACTGTC+TGG | - | Chr4:72007006-72007025 | None:intergenic | 35.0% |
| ! | CTTCTTTGTTTACTAGGTGT+TGG | - | Chr4:72006574-72006593 | None:intergenic | 35.0% |
| ATAAATAGCAACTGACCGGA+TGG | - | Chr4:72006671-72006690 | None:intergenic | 40.0% | |
| GTAAACAAAGAAGACGACGA+CGG | + | Chr4:72006581-72006600 | MsG0480022392.01.T01:CDS | 40.0% | |
| GTAGTGTGTGAAGAAGTAAC+GGG | + | Chr4:72006520-72006539 | MsG0480022392.01.T01:five_prime_UTR | 40.0% | |
| TAAAGGAAGCTTCAAGCTTC+AGG | - | Chr4:72006827-72006846 | None:intergenic | 40.0% | |
| TAAATAGCAACTGACCGGAT+GGG | - | Chr4:72006670-72006689 | None:intergenic | 40.0% | |
| TGAAAGAGGAACAAAAGCTG+TGG | + | Chr4:72006770-72006789 | MsG0480022392.01.T01:intron | 40.0% | |
| ! | CGTCGTCTTCTTTGTTTACT+AGG | - | Chr4:72006580-72006599 | None:intergenic | 40.0% |
| ! | GGTTTTGCTCAAATGGTTTG+TGG | + | Chr4:72006920-72006939 | MsG0480022392.01.T01:intron | 40.0% |
| ! | GTGAACAGGTTTTGCTCAAA+TGG | + | Chr4:72006913-72006932 | MsG0480022392.01.T01:intron | 40.0% |
| AGCTGTGGAAAAAAGGGGTT+TGG | + | Chr4:72006785-72006804 | MsG0480022392.01.T01:intron | 45.0% | |
| CATTTGACATGTTTGGCACC+TGG | - | Chr4:72006974-72006993 | None:intergenic | 45.0% | |
| TTGACATGTTTGGCACCTGG+TGG | - | Chr4:72006971-72006990 | None:intergenic | 50.0% | |
| AACTGACCGGATGGGAGTGA+CGG | - | Chr4:72006662-72006681 | None:intergenic | 55.0% | |
| ATAGGTTGCCAACCAGGTGG+CGG | - | Chr4:72006608-72006627 | None:intergenic | 55.0% | |
| GGAATAGGTTGCCAACCAGG+TGG | - | Chr4:72006611-72006630 | None:intergenic | 55.0% | |
| ! | CACCTGGTGGATACGAAAGC+AGG | - | Chr4:72006958-72006977 | None:intergenic | 55.0% |
| ! | CTGGTGGATACGAAAGCAGG+CGG | - | Chr4:72006955-72006974 | None:intergenic | 55.0% |
| CGCCTGCTTTCGTATCCACC+AGG | + | Chr4:72006953-72006972 | MsG0480022392.01.T01:CDS | 60.0% | |
| GGGGGAATAGGTTGCCAACC+AGG | - | Chr4:72006614-72006633 | None:intergenic | 60.0% | |
| TAGGTTGCCAACCAGGTGGC+GGG | - | Chr4:72006607-72006626 | None:intergenic | 60.0% | |
| TGACCGGATGGGAGTGACGG+TGG | - | Chr4:72006659-72006678 | None:intergenic | 65.0% | |
| CCGCCACCGTCACTCCCATC+CGG | + | Chr4:72006653-72006672 | MsG0480022392.01.T01:CDS | 70.0% | |
| CCGGATGGGAGTGACGGTGG+CGG | - | Chr4:72006656-72006675 | None:intergenic | 70.0% | |
| TTCCCCCACCGCAACGCCCA+CGG | + | Chr4:72006627-72006646 | MsG0480022392.01.T01:CDS | 70.0% | |
| ! | GATGGGAGTGACGGTGGCGG+TGG | - | Chr4:72006653-72006672 | None:intergenic | 70.0% |
| ! | GGGCGTTGCGGTGGGGGAAT+AGG | - | Chr4:72006626-72006645 | None:intergenic | 70.0% |
| ACGACGGCCCGCCACCTGGT+TGG | + | Chr4:72006597-72006616 | MsG0480022392.01.T01:CDS | 75.0% | |
| ! | AGTGACGGTGGCGGTGGCCG+TGG | - | Chr4:72006647-72006666 | None:intergenic | 75.0% |
| ! | GTGACGGTGGCGGTGGCCGT+GGG | - | Chr4:72006646-72006665 | None:intergenic | 75.0% |
| ! | GTGGCCGTGGGCGTTGCGGT+GGG | - | Chr4:72006634-72006653 | None:intergenic | 75.0% |
| ! | TGGCCGTGGGCGTTGCGGTG+GGG | - | Chr4:72006633-72006652 | None:intergenic | 75.0% |
| ! | GACGACGACGGCCCGCCACC+TGG | + | Chr4:72006593-72006612 | MsG0480022392.01.T01:CDS | 80.0% |
| !! | GGCCGTGGGCGTTGCGGTGG+GGG | - | Chr4:72006632-72006651 | None:intergenic | 80.0% |
| !! | GGCGGTGGCCGTGGGCGTTG+CGG | - | Chr4:72006638-72006657 | None:intergenic | 80.0% |
| !! | GGTGGCCGTGGGCGTTGCGG+TGG | - | Chr4:72006635-72006654 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 72006520 | 72007069 | 72006520 | ID=MsG0480022392.01;Name=MsG0480022392.01 |
| Chr4 | mRNA | 72006520 | 72007069 | 72006520 | ID=MsG0480022392.01.T01;Parent=MsG0480022392.01;Name=MsG0480022392.01.T01;_AED=0.50;_eAED=0.56;_QI=40|1|0.5|1|1|1|2|0|87 |
| Chr4 | exon | 72006520 | 72006674 | 72006520 | ID=MsG0480022392.01.T01:exon:4928;Parent=MsG0480022392.01.T01 |
| Chr4 | exon | 72006921 | 72007069 | 72006921 | ID=MsG0480022392.01.T01:exon:4929;Parent=MsG0480022392.01.T01 |
| Chr4 | five_prime_UTR | 72006520 | 72006559 | 72006520 | ID=MsG0480022392.01.T01:five_prime_utr;Parent=MsG0480022392.01.T01 |
| Chr4 | CDS | 72006560 | 72006674 | 72006560 | ID=MsG0480022392.01.T01:cds;Parent=MsG0480022392.01.T01 |
| Chr4 | CDS | 72006921 | 72007069 | 72006921 | ID=MsG0480022392.01.T01:cds;Parent=MsG0480022392.01.T01 |
| Gene Sequence |
| Protein sequence |
