AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004085.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004085.01.T01 MTR_1g074880 98.438 320 5 0 1 320 1 320 0.0 655
MsG0180004085.01.T01 MTR_1g074880 98.428 318 5 0 1 318 1 318 0.0 653
MsG0180004085.01.T01 MTR_1g079950 82.243 321 56 1 1 320 30 350 0.0 570
MsG0180004085.01.T01 MTR_1g079950 82.243 321 56 1 1 320 1 321 0.0 569
MsG0180004085.01.T01 MTR_1g079950 82.500 320 55 1 1 319 1 320 0.0 568
MsG0180004085.01.T01 MTR_1g079950 82.445 319 55 1 1 318 1 319 0.0 568
MsG0180004085.01.T01 MTR_7g116380 83.178 321 53 1 1 320 1 321 0.0 567
MsG0180004085.01.T01 MTR_7g116380 83.438 320 52 1 1 319 1 320 0.0 566
MsG0180004085.01.T01 MTR_1g043240 84.984 313 46 1 1 312 1 313 0.0 566
MsG0180004085.01.T01 MTR_1g074880 98.092 262 5 0 59 320 4 265 0.0 540
MsG0180004085.01.T01 MTR_1g074880 98.077 260 5 0 59 318 4 263 0.0 537
MsG0180004085.01.T01 MTR_5g081230 81.788 302 54 1 1 301 17 318 0.0 526
MsG0180004085.01.T01 MTR_8g098980 74.448 317 80 1 1 316 1 317 0.0 513
MsG0180004085.01.T01 MTR_8g005010 77.586 290 65 0 6 295 4 293 2.30e-177 492
MsG0180004085.01.T01 MTR_7g112870 74.026 308 74 2 1 308 5 306 2.88e-173 483
MsG0180004085.01.T01 MTR_1g079950 84.231 260 40 1 60 318 34 293 2.35e-171 478
MsG0180004085.01.T01 MTR_5g093990 46.758 293 150 3 26 317 17 304 1.64e-94 283
MsG0180004085.01.T01 MTR_7g107310 48.175 274 140 2 26 298 27 299 1.71e-94 283
MsG0180004085.01.T01 MTR_8g062430 48.175 274 140 2 26 298 20 292 5.58e-93 279
MsG0180004085.01.T01 MTR_8g085610 45.455 297 153 3 3 298 6 294 2.15e-92 277
MsG0180004085.01.T01 MTR_5g037200 48.175 274 140 2 26 298 20 292 1.37e-91 275
MsG0180004085.01.T01 MTR_8g085610 47.037 270 141 2 30 298 2 270 3.55e-90 271
MsG0180004085.01.T01 MTR_1g039380 45.247 263 141 3 25 285 15 276 1.39e-89 270
MsG0180004085.01.T01 MTR_1g039380 45.783 249 132 3 39 285 5 252 3.33e-87 263
MsG0180004085.01.T01 MTR_4g050540 47.869 305 140 8 9 295 649 952 1.97e-83 271
MsG0180004085.01.T01 MTR_2g087530 47.869 305 140 8 9 295 644 947 2.33e-83 271
MsG0180004085.01.T01 MTR_1g089370 47.097 310 147 6 3 295 522 831 3.57e-83 269
MsG0180004085.01.T01 MTR_2g087530 47.869 305 140 8 9 295 531 834 3.55e-82 266
MsG0180004085.01.T01 MTR_3g452710 45.059 253 132 4 33 279 195 446 6.94e-73 233
MsG0180004085.01.T01 MTR_3g452710 45.059 253 132 4 33 279 262 513 3.73e-72 233
MsG0180004085.01.T01 MTR_2g100130 40.484 289 160 6 22 299 102 389 6.71e-69 220
MsG0180004085.01.T01 MTR_2g100130 42.642 265 144 5 22 279 172 435 8.17e-68 219
MsG0180004085.01.T01 MTR_2g100130 42.642 265 144 5 22 279 201 464 8.83e-68 220
MsG0180004085.01.T01 MTR_2g100130 42.642 265 144 5 22 279 211 474 1.24e-67 220
MsG0180004085.01.T01 MTR_2g100130 42.642 265 144 5 22 279 211 474 1.37e-67 220
MsG0180004085.01.T01 MTR_2g100130 42.642 265 143 6 22 279 172 434 1.96e-66 216
MsG0180004085.01.T01 MTR_2g100130 42.642 265 143 6 22 279 211 473 2.33e-66 217
MsG0180004085.01.T01 MTR_2g100130 43.137 255 137 5 22 269 211 464 7.26e-66 215
MsG0180004085.01.T01 MTR_2g100160 40.288 278 154 6 33 299 132 408 1.73e-61 201
MsG0180004085.01.T01 MTR_5g037200 50.898 167 81 1 26 191 20 186 1.35e-56 182
MsG0180004085.01.T01 MTR_8g072600 31.746 315 148 10 33 281 100 413 9.97e-39 142
MsG0180004085.01.T01 MTR_8g072600 32.661 248 121 7 33 235 100 346 5.68e-32 122
MsG0180004085.01.T01 MTR_2g099710 26.923 286 137 11 31 268 211 472 4.72e-20 91.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004085.01.T01 AT2G39840 79.739 306 61 1 1 305 14 319 0.0 528
MsG0180004085.01.T01 AT5G43380 77.707 314 70 0 1 314 1 314 0.0 523
MsG0180004085.01.T01 AT5G43380 77.707 314 70 0 1 314 1 314 0.0 523
MsG0180004085.01.T01 AT5G43380 77.707 314 70 0 1 314 1 314 0.0 521
MsG0180004085.01.T01 AT1G64040 76.025 317 75 1 1 316 1 317 0.0 519
MsG0180004085.01.T01 AT2G29400 80.592 304 55 3 1 301 15 317 0.0 518
MsG0180004085.01.T01 AT5G59160 79.208 303 61 2 1 301 9 311 0.0 516
MsG0180004085.01.T01 AT5G59160 79.208 303 61 2 1 301 9 311 0.0 516
MsG0180004085.01.T01 AT5G59160 79.208 303 61 2 1 301 9 311 0.0 516
MsG0180004085.01.T01 AT3G46820 77.228 303 67 1 1 301 9 311 0.0 505
MsG0180004085.01.T01 AT4G11240 71.609 317 89 1 1 316 1 317 9.40e-179 497
MsG0180004085.01.T01 AT5G27840 76.190 294 68 1 1 294 9 300 4.12e-174 485
MsG0180004085.01.T01 AT5G27840 76.190 294 68 1 1 294 9 300 4.44e-174 485
MsG0180004085.01.T01 AT5G27840 76.190 294 68 1 1 294 9 300 4.44e-174 485
MsG0180004085.01.T01 AT5G27840 76.190 294 68 1 1 294 9 300 5.22e-174 485
MsG0180004085.01.T01 AT3G05580 76.190 294 68 1 1 294 9 300 9.64e-172 479
MsG0180004085.01.T01 AT3G05580 75.203 246 59 1 1 246 9 252 2.69e-139 394
MsG0180004085.01.T01 AT5G55260 47.099 293 149 3 26 317 17 304 6.00e-97 289
MsG0180004085.01.T01 AT2G42500 48.540 274 139 2 26 298 27 299 1.21e-95 286
MsG0180004085.01.T01 AT3G58500 47.810 274 141 2 26 298 27 299 4.68e-94 282
MsG0180004085.01.T01 AT1G69960 46.284 296 150 3 4 298 6 293 2.08e-93 280
MsG0180004085.01.T01 AT4G26720 45.230 283 146 2 26 299 17 299 5.48e-93 279
MsG0180004085.01.T01 AT1G10430 45.608 296 152 3 4 298 5 292 2.86e-92 277
MsG0180004085.01.T01 AT1G10430 45.608 296 152 3 4 298 5 292 2.86e-92 277
MsG0180004085.01.T01 AT1G59830 46.284 296 150 3 4 298 5 292 5.15e-92 276
MsG0180004085.01.T01 AT3G19980 45.247 263 141 3 25 285 15 276 3.79e-89 269
MsG0180004085.01.T01 AT1G50370 44.867 263 142 3 25 285 15 276 4.82e-89 269
MsG0180004085.01.T01 AT5G55260 41.317 334 149 4 26 317 17 345 2.28e-88 268
MsG0180004085.01.T01 AT4G03080 46.774 310 148 7 3 295 524 833 1.48e-83 270
MsG0180004085.01.T01 AT2G27210 47.213 305 142 8 9 295 650 953 5.53e-82 268
MsG0180004085.01.T01 AT2G27210 47.213 305 142 8 9 295 655 958 5.85e-82 268
MsG0180004085.01.T01 AT1G08420 47.213 305 142 8 9 295 661 964 2.92e-81 266
MsG0180004085.01.T01 AT1G08420 47.213 305 142 8 9 295 666 969 3.08e-81 266
MsG0180004085.01.T01 AT1G59830 49.004 251 119 3 4 253 5 247 4.55e-81 247
MsG0180004085.01.T01 AT1G03445 46.831 284 134 7 26 294 476 757 3.92e-79 256
MsG0180004085.01.T01 AT1G03445 46.831 284 134 7 26 294 476 757 4.45e-79 256
MsG0180004085.01.T01 AT2G42500 49.321 221 110 2 79 298 33 252 3.56e-75 232
MsG0180004085.01.T01 AT2G42810 44.664 253 133 4 33 279 197 448 6.41e-70 225
MsG0180004085.01.T01 AT2G42810 44.664 253 133 4 33 279 197 448 6.41e-70 225
MsG0180004085.01.T01 AT2G42810 44.664 253 133 4 33 279 197 448 6.41e-70 225
MsG0180004085.01.T01 AT2G42810 44.664 253 133 4 33 279 250 501 1.50e-69 226
MsG0180004085.01.T01 AT2G42810 44.664 253 133 4 33 279 251 502 1.58e-69 226
MsG0180004085.01.T01 AT2G42500 48.299 147 72 3 26 168 27 173 2.28e-44 150
MsG0180004085.01.T01 AT2G42500 47.403 154 75 4 26 175 27 178 8.14e-44 148
MsG0180004085.01.T01 AT2G42500 50.360 139 65 3 26 160 27 165 1.38e-43 147
MsG0180004085.01.T01 AT5G63870 30.473 338 168 11 33 303 52 389 5.65e-36 134
MsG0180004085.01.T01 AT5G63870 30.473 338 168 11 33 303 52 389 5.65e-36 134
MsG0180004085.01.T01 AT1G48120 29.412 340 168 9 31 300 628 965 4.89e-30 120
MsG0180004085.01.T01 AT5G63870 31.837 245 127 6 33 237 52 296 3.18e-29 114
MsG0180004085.01.T01 AT5G10900 33.023 215 120 8 52 245 222 433 1.26e-22 99.0
MsG0180004085.01.T01 AT5G10900 33.491 212 117 8 55 245 225 433 1.38e-22 98.6
MsG0180004085.01.T01 AT5G10900 33.491 212 117 8 55 245 225 433 1.43e-22 98.6

Find 80 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATTCTCCACAGTAATT+AGG 0.241896 1:-73081017 None:intergenic
GTCTATTATGTGACCTCTTA+TGG 0.268848 1:+73080705 MsG0180004085.01.T01:CDS
AAATCCGTAGATACGGTTTA+TGG 0.280200 1:-73080495 None:intergenic
TGGAATTGAAATGATATTAT+AGG 0.288763 1:-73078943 None:intergenic
AATATACCACAGATCTTAAT+AGG 0.298021 1:-73079298 None:intergenic
TGATTTAAATCGTGTAATTC+AGG 0.302882 1:-73080641 None:intergenic
TAGAAAACAAATTAGAAATA+TGG 0.306123 1:+73079120 MsG0180004085.01.T01:exon
AAGTCTCTGCTTTACCCTTC+AGG 0.326238 1:+73081556 MsG0180004085.01.T01:three_prime_UTR
ATGATCTTGATTTGATTTGC+AGG 0.337705 1:+73080825 MsG0180004085.01.T01:CDS
AAAAGAGGAGAGAAGAATAA+AGG 0.348037 1:-73078909 None:intergenic
GGAATTGAAATGATATTATA+GGG 0.349365 1:-73078942 None:intergenic
TACACGGGAAAGTTGTAAAA+TGG 0.363935 1:-73081251 None:intergenic
CCGTGTGAAGTTCCTGAATC+TGG 0.374187 1:+73080683 MsG0180004085.01.T01:CDS
CGTGGAGTTTCATATACATT+TGG 0.381055 1:+73080770 MsG0180004085.01.T01:CDS
TAGTAGTGATGTTCGTGGTT+GGG 0.384770 1:+73080736 MsG0180004085.01.T01:CDS
AGAAACAATATGTCTTCTTC+TGG 0.391096 1:+73080412 MsG0180004085.01.T01:CDS
TTTGATTTGCAGGGCTCATC+AGG 0.392866 1:+73080835 MsG0180004085.01.T01:CDS
ATTCGTGGTTACCCCTTAGA+AGG 0.394389 1:-73080466 None:intergenic
ATGTTACCAGGAGATATTCA+TGG 0.394694 1:+73080287 MsG0180004085.01.T01:intron
TTGTTGATGGTATTATCAAT+AGG 0.402079 1:+73079152 MsG0180004085.01.T01:CDS
CTTTCTTTCCAAGCCAACTT+TGG 0.414351 1:-73081505 None:intergenic
GCTTCTAGTTTCAAGAGATT+AGG 0.427307 1:-73079274 None:intergenic
TCACATAATAGACCAGATTC+AGG 0.431932 1:-73080695 None:intergenic
GAAAGCTGAACCTGCTTCCC+TGG 0.443268 1:-73079196 None:intergenic
AGTAGTGATGTTCGTGGTTG+GGG 0.445269 1:+73080737 MsG0180004085.01.T01:CDS
TATATTCGAATGAATTCAAA+TGG 0.447104 1:-73078981 None:intergenic
GGTGCTAAAGAATGACTTGA+TGG 0.450168 1:+73081449 MsG0180004085.01.T01:three_prime_UTR
ATGGAACGTGGAGTTGTTGA+TGG 0.454585 1:+73079139 MsG0180004085.01.T01:CDS
AAGAGGTAGACCAGGGAAGC+AGG 0.459465 1:+73079186 MsG0180004085.01.T01:CDS
AAATGTGGCCAAAGTTGGCT+TGG 0.479812 1:+73081497 MsG0180004085.01.T01:three_prime_UTR
GGAGATACAATGTGAAGCTA+TGG 0.485510 1:+73080534 MsG0180004085.01.T01:CDS
CAACCACGAACATCACTACT+AGG 0.486128 1:-73080734 None:intergenic
TAGTAGTCCAACAAAATTCA+AGG 0.492608 1:+73081154 MsG0180004085.01.T01:CDS
AAGAAACTCTTTAACCCTAT+CGG 0.496948 1:-73080795 None:intergenic
ATATTGTCAAACGCAATTGA+AGG 0.499389 1:+73081627 MsG0180004085.01.T01:three_prime_UTR
CTAGTAGTGATGTTCGTGGT+TGG 0.504572 1:+73080735 MsG0180004085.01.T01:CDS
AAAGCTTATAAGAAGAGTAG+TGG 0.505031 1:-73079014 None:intergenic
AGTCTCTGCTTTACCCTTCA+GGG 0.505974 1:+73081557 MsG0180004085.01.T01:three_prime_UTR
TACTAGGATCAGACCATAAG+AGG 0.507611 1:-73080718 None:intergenic
GCGTTTGACAATATTGTACA+AGG 0.509002 1:-73081618 None:intergenic
TGATCTTGATTTGATTTGCA+GGG 0.513485 1:+73080826 MsG0180004085.01.T01:CDS
AATAGGTTACTTGAAGTAAG+AGG 0.517432 1:+73079169 MsG0180004085.01.T01:CDS
GTCAATATTCCGACCTTCTG+AGG 0.518139 1:+73080309 MsG0180004085.01.T01:CDS
ATATACATTTGGTGCCGATA+GGG 0.527545 1:+73080781 MsG0180004085.01.T01:CDS
GTTTGAAATGTGGCCAAAGT+TGG 0.528657 1:+73081492 MsG0180004085.01.T01:three_prime_UTR
CATCATAAAATCCGTAGATA+CGG 0.530362 1:-73080502 None:intergenic
CTTGAAGTAAGAGGTAGACC+AGG 0.531943 1:+73079178 MsG0180004085.01.T01:CDS
CATATACATTTGGTGCCGAT+AGG 0.532156 1:+73080780 MsG0180004085.01.T01:CDS
AAATATTTAGCTGTCCCTGA+AGG 0.534784 1:-73081571 None:intergenic
TTGTTGCAGGTTGTGGAAGA+CGG 0.543349 1:+73080948 MsG0180004085.01.T01:intron
GTGCTTCCAAAGCTAAACTT+AGG 0.544982 1:-73081116 None:intergenic
CTCGAAAAGCCTCAGAAGGT+CGG 0.552388 1:-73080318 None:intergenic
GGTTTATGGAAGCACATTCG+TGG 0.557667 1:-73080481 None:intergenic
CTAGTTTCAAGAGATTAGGT+TGG 0.567064 1:-73079270 None:intergenic
TGTGGAGAATTTGACAATGC+TGG 0.567360 1:+73081026 MsG0180004085.01.T01:CDS
TTTCAATTGTTTGCCTGTGG+CGG 0.574441 1:+73080574 MsG0180004085.01.T01:CDS
GACGGAGTACAAAGCCTACA+CGG 0.577482 1:-73081267 None:intergenic
AATATTTAGCTGTCCCTGAA+GGG 0.578422 1:-73081570 None:intergenic
GCTTCCATAAACCGTATCTA+CGG 0.579276 1:+73080491 MsG0180004085.01.T01:CDS
AGTTTGAATATGTAATCTCA+AGG 0.589402 1:-73081290 None:intergenic
GATATCTAATGTTTGAAATG+TGG 0.592660 1:+73081482 MsG0180004085.01.T01:three_prime_UTR
GATCCTAGTAGTGATGTTCG+TGG 0.596697 1:+73080731 MsG0180004085.01.T01:CDS
TCATCAATGAGAGCCGCCAC+AGG 0.602243 1:-73080587 None:intergenic
GGTTGGGGAGAAAGCGAGCG+TGG 0.603320 1:+73080752 MsG0180004085.01.T01:CDS
TTGTTTCAATTGTTTGCCTG+TGG 0.606705 1:+73080571 MsG0180004085.01.T01:CDS
GAAAAGATTATCTGTATGCA+TGG 0.619510 1:+73080608 MsG0180004085.01.T01:CDS
CAAATTAGAAATATGGAACG+TGG 0.634209 1:+73079127 MsG0180004085.01.T01:exon
AATAAATAATTCGAGCGAGG+AGG 0.639135 1:-73080353 None:intergenic
GTTTGAATATGTAATCTCAA+GGG 0.641407 1:-73081289 None:intergenic
GAATATGTAATCTCAAGGGA+CGG 0.648378 1:-73081285 None:intergenic
CCAGATTCAGGAACTTCACA+CGG 0.648649 1:-73080683 None:intergenic
GAAGCACCTATTAAGATCTG+TGG 0.649585 1:+73079292 MsG0180004085.01.T01:CDS
ACGGAGTACAAAGCCTACAC+GGG 0.651897 1:-73081266 None:intergenic
CGTACTCGAAAAGCCTCAGA+AGG 0.657790 1:-73080322 None:intergenic
TTAGGAGACTATGTTGATCG+CGG 0.661259 1:+73080377 MsG0180004085.01.T01:CDS
GTATATATCAGTTGTTCATG+AGG 0.669738 1:-73081358 None:intergenic
TTGAAGTAAGAGGTAGACCA+GGG 0.670591 1:+73079179 MsG0180004085.01.T01:CDS
AAAATGCTTGCTGAAAGTGG+AGG 0.694326 1:-73081424 None:intergenic
AAGATTATCTGTATGCATGG+TGG 0.720136 1:+73080611 MsG0180004085.01.T01:CDS
TGAATACACAACTTGCACTG+AGG 0.744506 1:+73081190 MsG0180004085.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGAAAACAAATTAGAAATA+TGG + Chr1:73079120-73079139 MsG0180004085.01.T01:exon 15.0%
!! TTATGTATAAACTTAGAATT+TGG - Chr1:73080904-73080923 None:intergenic 15.0%
!! TTCTAAGTTTATACATAATA+AGG + Chr1:73080906-73080925 MsG0180004085.01.T01:intron 15.0%
!!! CTTTTCATACAAATTATATA+TGG + Chr1:73079577-73079596 MsG0180004085.01.T01:intron 15.0%
!!! TAAATATTTCTTTCTTTTGA+TGG + Chr1:73081585-73081604 MsG0180004085.01.T01:three_prime_UTR 15.0%
!!! TAGTATTTTTTATACTTGTT+AGG + Chr1:73079754-73079773 MsG0180004085.01.T01:intron 15.0%
!!! TATTTCTAATTTGTTTTCTA+AGG - Chr1:73079120-73079139 None:intergenic 15.0%
!!! TTGATTGATTTAATTAGTAT+AGG + Chr1:73079353-73079372 MsG0180004085.01.T01:intron 15.0%
!! AAAAAAATTATACATGGTCT+AGG + Chr1:73079611-73079630 MsG0180004085.01.T01:intron 20.0%
!! AAAAAATTATACATGGTCTA+GGG + Chr1:73079612-73079631 MsG0180004085.01.T01:intron 20.0%
!! GGAATTGAAATGATATTATA+GGG - Chr1:73078945-73078964 None:intergenic 20.0%
!! TATATTCGAATGAATTCAAA+TGG - Chr1:73078984-73079003 None:intergenic 20.0%
!! TGGAATTGAAATGATATTAT+AGG - Chr1:73078946-73078965 None:intergenic 20.0%
!!! AAGCTGTTGTTTTTTATTAT+AGG + Chr1:73079910-73079929 MsG0180004085.01.T01:intron 20.0%
!!! GATTTTATGATGAATGTAAA+AGG + Chr1:73080513-73080532 MsG0180004085.01.T01:CDS 20.0%
!!! TAAAAACTTTTTCCTTCTAA+GGG + Chr1:73080454-73080473 MsG0180004085.01.T01:CDS 20.0%
!!! TGTTTTTTATTATAGGAAGT+GGG + Chr1:73079917-73079936 MsG0180004085.01.T01:intron 20.0%
!!! TTGTTTTTTATTATAGGAAG+TGG + Chr1:73079916-73079935 MsG0180004085.01.T01:intron 20.0%
! AAAAATAAATAATTCGAGCG+AGG - Chr1:73080359-73080378 None:intergenic 25.0%
! AAACCTTTACACTTTATTGA+CGG - Chr1:73079413-73079432 None:intergenic 25.0%
! AATATACCACAGATCTTAAT+AGG - Chr1:73079301-73079320 None:intergenic 25.0%
! AGGTTAAATATGTTTGATCA+CGG - Chr1:73080217-73080236 None:intergenic 25.0%
! AGTTTGAATATGTAATCTCA+AGG - Chr1:73081293-73081312 None:intergenic 25.0%
! ATAAGTGTGAAACTAAACAT+AGG + Chr1:73080179-73080198 MsG0180004085.01.T01:intron 25.0%
! CAATTCTAATTAAACTGATG+TGG + Chr1:73080058-73080077 MsG0180004085.01.T01:intron 25.0%
! CATCAGTTTAATTAGAATTG+TGG - Chr1:73080058-73080077 None:intergenic 25.0%
! GTTTGAATATGTAATCTCAA+GGG - Chr1:73081292-73081311 None:intergenic 25.0%
! TGATTTAAATCGTGTAATTC+AGG - Chr1:73080644-73080663 None:intergenic 25.0%
! TTTCATTTCTTTATGTTACC+AGG + Chr1:73080275-73080294 MsG0180004085.01.T01:intron 25.0%
!! CAAAATACCTTGAATTTTGT+TGG - Chr1:73081164-73081183 None:intergenic 25.0%
!! CTTAGAAGGAAAAAGTTTTT+AGG - Chr1:73080455-73080474 None:intergenic 25.0%
!! GATATCTAATGTTTGAAATG+TGG + Chr1:73081482-73081501 MsG0180004085.01.T01:three_prime_UTR 25.0%
!! TGTAATTTTCTTTTTGTTGC+AGG + Chr1:73080935-73080954 MsG0180004085.01.T01:intron 25.0%
!!! AAAAACTTTTTCCTTCTAAG+GGG + Chr1:73080455-73080474 MsG0180004085.01.T01:CDS 25.0%
!!! AGGATTTAATTTGTATACGT+CGG + Chr1:73079373-73079392 MsG0180004085.01.T01:intron 25.0%
!!! CGCTCGAATTATTTATTTTT+AGG + Chr1:73080359-73080378 MsG0180004085.01.T01:CDS 25.0%
!!! CTAAAAACTTTTTCCTTCTA+AGG + Chr1:73080453-73080472 MsG0180004085.01.T01:CDS 25.0%
!!! TCATCGTAACAAGTTTTATA+CGG - Chr1:73079517-73079536 None:intergenic 25.0%
!!! TTGTTGATGGTATTATCAAT+AGG + Chr1:73079152-73079171 MsG0180004085.01.T01:CDS 25.0%
AAAAGAGGAGAGAAGAATAA+AGG - Chr1:73078912-73078931 None:intergenic 30.0%
AAAGCTTATAAGAAGAGTAG+TGG - Chr1:73079017-73079036 None:intergenic 30.0%
AAATATGCAATGACATCACT+TGG - Chr1:73079831-73079850 None:intergenic 30.0%
AAGAAACTCTTTAACCCTAT+CGG - Chr1:73080798-73080817 None:intergenic 30.0%
AATAGGTTACTTGAAGTAAG+AGG + Chr1:73079169-73079188 MsG0180004085.01.T01:CDS 30.0%
AATGGAAAAAGAGAAGATAG+TGG - Chr1:73078966-73078985 None:intergenic 30.0%
AGAAACAATATGTCTTCTTC+TGG + Chr1:73080412-73080431 MsG0180004085.01.T01:CDS 30.0%
ATATTGTCAAACGCAATTGA+AGG + Chr1:73081627-73081646 MsG0180004085.01.T01:three_prime_UTR 30.0%
ATGAAACAAGACATTAGCAT+AGG - Chr1:73080261-73080280 None:intergenic 30.0%
CAAATTAGAAATATGGAACG+TGG + Chr1:73079127-73079146 MsG0180004085.01.T01:exon 30.0%
CATCATAAAATCCGTAGATA+CGG - Chr1:73080505-73080524 None:intergenic 30.0%
CTTTATAGTTTAGCGAATCA+CGG - Chr1:73079893-73079912 None:intergenic 30.0%
GAAAAGATTATCTGTATGCA+TGG + Chr1:73080608-73080627 MsG0180004085.01.T01:CDS 30.0%
GTATATATCAGTTGTTCATG+AGG - Chr1:73081361-73081380 None:intergenic 30.0%
TAGTAGTCCAACAAAATTCA+AGG + Chr1:73081154-73081173 MsG0180004085.01.T01:CDS 30.0%
TCAAATTCTCCACAGTAATT+AGG - Chr1:73081020-73081039 None:intergenic 30.0%
! AAAAAGCCTAAGTTTAGCTT+TGG + Chr1:73081110-73081129 MsG0180004085.01.T01:CDS 30.0%
! AACTTAGGCTTTTTATCAAG+AGG - Chr1:73081104-73081123 None:intergenic 30.0%
! ACTGTTGTTGTTATAGAAGT+AGG + Chr1:73079949-73079968 MsG0180004085.01.T01:intron 30.0%
! ATTTTCTATCTGTGAAAACG+CGG + Chr1:73080155-73080174 MsG0180004085.01.T01:intron 30.0%
! CTGTTGTTGTTATAGAAGTA+GGG + Chr1:73079950-73079969 MsG0180004085.01.T01:intron 30.0%
! TAATTTGTATACGTCGGTAA+AGG + Chr1:73079379-73079398 MsG0180004085.01.T01:intron 30.0%
!! ATGATCTTGATTTGATTTGC+AGG + Chr1:73080825-73080844 MsG0180004085.01.T01:CDS 30.0%
!! TGATCTTGATTTGATTTGCA+GGG + Chr1:73080826-73080845 MsG0180004085.01.T01:CDS 30.0%
AAATATTTAGCTGTCCCTGA+AGG - Chr1:73081574-73081593 None:intergenic 35.0%
AAATCCGTAGATACGGTTTA+TGG - Chr1:73080498-73080517 None:intergenic 35.0%
AAATTATACATGGTCTAGGG+CGG + Chr1:73079615-73079634 MsG0180004085.01.T01:intron 35.0%
AAGATTATCTGTATGCATGG+TGG + Chr1:73080611-73080630 MsG0180004085.01.T01:CDS 35.0%
AATAAATAATTCGAGCGAGG+AGG - Chr1:73080356-73080375 None:intergenic 35.0%
AATATTTAGCTGTCCCTGAA+GGG - Chr1:73081573-73081592 None:intergenic 35.0%
ACATCACTTGGTTAAGCTAA+GGG - Chr1:73079819-73079838 None:intergenic 35.0%
AGAATTGTGGAGTCCATAAA+GGG - Chr1:73080045-73080064 None:intergenic 35.0%
AGCATATATCAGACCCTTTA+TGG + Chr1:73080029-73080048 MsG0180004085.01.T01:intron 35.0%
AGTGTGAAACTAAACATAGG+TGG + Chr1:73080182-73080201 MsG0180004085.01.T01:intron 35.0%
ATGCCGTCAATAAAGTGTAA+AGG + Chr1:73079407-73079426 MsG0180004085.01.T01:intron 35.0%
ATGTTACCAGGAGATATTCA+TGG + Chr1:73080287-73080306 MsG0180004085.01.T01:intron 35.0%
CAATTGTGAGCGCAATATAA+AGG - Chr1:73079860-73079879 None:intergenic 35.0%
CACAACAGTAATACATGTCA+AGG - Chr1:73080237-73080256 None:intergenic 35.0%
CGTGGAGTTTCATATACATT+TGG + Chr1:73080770-73080789 MsG0180004085.01.T01:CDS 35.0%
CTAGTTTCAAGAGATTAGGT+TGG - Chr1:73079273-73079292 None:intergenic 35.0%
CTTGACATGTATTACTGTTG+TGG + Chr1:73080235-73080254 MsG0180004085.01.T01:intron 35.0%
GAATATGTAATCTCAAGGGA+CGG - Chr1:73081288-73081307 None:intergenic 35.0%
GCGTTTGACAATATTGTACA+AGG - Chr1:73081621-73081640 None:intergenic 35.0%
GTCTATTATGTGACCTCTTA+TGG + Chr1:73080705-73080724 MsG0180004085.01.T01:CDS 35.0%
TACACGGGAAAGTTGTAAAA+TGG - Chr1:73081254-73081273 None:intergenic 35.0%
TAGAATTGTGGAGTCCATAA+AGG - Chr1:73080046-73080065 None:intergenic 35.0%
TAGGGAAAGAGAAGAAAAAG+AGG - Chr1:73078927-73078946 None:intergenic 35.0%
TATTGACCATGAATATCTCC+TGG - Chr1:73080296-73080315 None:intergenic 35.0%
TCACATAATAGACCAGATTC+AGG - Chr1:73080698-73080717 None:intergenic 35.0%
TGGTTAAGCTAAGGGATTAA+AGG - Chr1:73079811-73079830 None:intergenic 35.0%
TGTTATAGAAGTAGGGAGTA+GGG + Chr1:73079957-73079976 MsG0180004085.01.T01:intron 35.0%
TTGTTATAGAAGTAGGGAGT+AGG + Chr1:73079956-73079975 MsG0180004085.01.T01:intron 35.0%
TTGTTTCAATTGTTTGCCTG+TGG + Chr1:73080571-73080590 MsG0180004085.01.T01:CDS 35.0%
! ACTTGTTAGGATTCGAAGTT+GGG + Chr1:73079767-73079786 MsG0180004085.01.T01:intron 35.0%
! ATTTTACAACTTTCCCGTGT+AGG + Chr1:73081253-73081272 MsG0180004085.01.T01:three_prime_UTR 35.0%
! CAAAAAATGCTTGCTGAAAG+TGG - Chr1:73081430-73081449 None:intergenic 35.0%
! TACTTGTTAGGATTCGAAGT+TGG + Chr1:73079766-73079785 MsG0180004085.01.T01:intron 35.0%
! TTTCTTTTTGTTGCAGGTTG+TGG + Chr1:73080941-73080960 MsG0180004085.01.T01:intron 35.0%
! TTTTCAGCACCTAATTACTG+TGG + Chr1:73081008-73081027 MsG0180004085.01.T01:CDS 35.0%
!! ATATACATTTGGTGCCGATA+GGG + Chr1:73080781-73080800 MsG0180004085.01.T01:CDS 35.0%
!! CTAAGGGATTAAAGGTGTTA+AGG - Chr1:73079803-73079822 None:intergenic 35.0%
!! GCTTCTAGTTTCAAGAGATT+AGG - Chr1:73079277-73079296 None:intergenic 35.0%
!!! ACTCTGAAAGCTCTGTTTTT+TGG + Chr1:73079996-73080015 MsG0180004085.01.T01:intron 35.0%
!!! CACTTTCAGCAAGCATTTTT+TGG + Chr1:73081428-73081447 MsG0180004085.01.T01:three_prime_UTR 35.0%
!!! TGAAAGCTCTGTTTTTTGGT+TGG + Chr1:73080000-73080019 MsG0180004085.01.T01:intron 35.0%
CTTTCTTTCCAAGCCAACTT+TGG - Chr1:73081508-73081527 None:intergenic 40.0%
GACATCACTTGGTTAAGCTA+AGG - Chr1:73079820-73079839 None:intergenic 40.0%
GCTTCCATAAACCGTATCTA+CGG + Chr1:73080491-73080510 MsG0180004085.01.T01:CDS 40.0%
GGAGATACAATGTGAAGCTA+TGG + Chr1:73080534-73080553 MsG0180004085.01.T01:CDS 40.0%
GGTGCTAAAGAATGACTTGA+TGG + Chr1:73081449-73081468 MsG0180004085.01.T01:three_prime_UTR 40.0%
GTGCTTCCAAAGCTAAACTT+AGG - Chr1:73081119-73081138 None:intergenic 40.0%
TACTAGGATCAGACCATAAG+AGG - Chr1:73080721-73080740 None:intergenic 40.0%
TAGTAGTGATGTTCGTGGTT+GGG + Chr1:73080736-73080755 MsG0180004085.01.T01:CDS 40.0%
TGAATACACAACTTGCACTG+AGG + Chr1:73081190-73081209 MsG0180004085.01.T01:three_prime_UTR 40.0%
TGTGGAGAATTTGACAATGC+TGG + Chr1:73081026-73081045 MsG0180004085.01.T01:CDS 40.0%
TTAGGAGACTATGTTGATCG+CGG + Chr1:73080377-73080396 MsG0180004085.01.T01:CDS 40.0%
TTGAAGTAAGAGGTAGACCA+GGG + Chr1:73079179-73079198 MsG0180004085.01.T01:CDS 40.0%
TTTCAATTGTTTGCCTGTGG+CGG + Chr1:73080574-73080593 MsG0180004085.01.T01:CDS 40.0%
! AAAATGCTTGCTGAAAGTGG+AGG - Chr1:73081427-73081446 None:intergenic 40.0%
! GAAGCACCTATTAAGATCTG+TGG + Chr1:73079292-73079311 MsG0180004085.01.T01:CDS 40.0%
! GTTTGAAATGTGGCCAAAGT+TGG + Chr1:73081492-73081511 MsG0180004085.01.T01:three_prime_UTR 40.0%
!! AGGGATTAAAGGTGTTAAGG+AGG - Chr1:73079800-73079819 None:intergenic 40.0%
!! CATATACATTTGGTGCCGAT+AGG + Chr1:73080780-73080799 MsG0180004085.01.T01:CDS 40.0%
!!! AGCTCTGTTTTTTGGTTGGT+AGG + Chr1:73080004-73080023 MsG0180004085.01.T01:intron 40.0%
AAATGTGGCCAAAGTTGGCT+TGG + Chr1:73081497-73081516 MsG0180004085.01.T01:three_prime_UTR 45.0%
AAGTCTCTGCTTTACCCTTC+AGG + Chr1:73081556-73081575 MsG0180004085.01.T01:three_prime_UTR 45.0%
AGTAGTGATGTTCGTGGTTG+GGG + Chr1:73080737-73080756 MsG0180004085.01.T01:CDS 45.0%
AGTCTCTGCTTTACCCTTCA+GGG + Chr1:73081557-73081576 MsG0180004085.01.T01:three_prime_UTR 45.0%
ATGGAACGTGGAGTTGTTGA+TGG + Chr1:73079139-73079158 MsG0180004085.01.T01:CDS 45.0%
ATTCGTGGTTACCCCTTAGA+AGG - Chr1:73080469-73080488 None:intergenic 45.0%
CAACCACGAACATCACTACT+AGG - Chr1:73080737-73080756 None:intergenic 45.0%
CCAGATTCAGGAACTTCACA+CGG - Chr1:73080686-73080705 None:intergenic 45.0%
CTAGTAGTGATGTTCGTGGT+TGG + Chr1:73080735-73080754 MsG0180004085.01.T01:CDS 45.0%
CTTGAAGTAAGAGGTAGACC+AGG + Chr1:73079178-73079197 MsG0180004085.01.T01:CDS 45.0%
GATCCTAGTAGTGATGTTCG+TGG + Chr1:73080731-73080750 MsG0180004085.01.T01:CDS 45.0%
GTCAATATTCCGACCTTCTG+AGG + Chr1:73080309-73080328 MsG0180004085.01.T01:CDS 45.0%
TTGTTGCAGGTTGTGGAAGA+CGG + Chr1:73080948-73080967 MsG0180004085.01.T01:intron 45.0%
! GGTTTATGGAAGCACATTCG+TGG - Chr1:73080484-73080503 None:intergenic 45.0%
!! TTTGATTTGCAGGGCTCATC+AGG + Chr1:73080835-73080854 MsG0180004085.01.T01:CDS 45.0%
!!! CTTCTGAGGCTTTTCGAGTA+CGG + Chr1:73080323-73080342 MsG0180004085.01.T01:CDS 45.0%
!! ATAAAAAAAAAAATTATACA+TGG + Chr1:73079605-73079624 MsG0180004085.01.T01:intron 5.0%
ACGGAGTACAAAGCCTACAC+GGG - Chr1:73081269-73081288 None:intergenic 50.0%
CCGTGTGAAGTTCCTGAATC+TGG + Chr1:73080683-73080702 MsG0180004085.01.T01:CDS 50.0%
CGTACTCGAAAAGCCTCAGA+AGG - Chr1:73080325-73080344 None:intergenic 50.0%
CTCGAAAAGCCTCAGAAGGT+CGG - Chr1:73080321-73080340 None:intergenic 50.0%
GACGGAGTACAAAGCCTACA+CGG - Chr1:73081270-73081289 None:intergenic 50.0%
TAGGCTGCGGCAAAATGCTT+TGG + Chr1:73079645-73079664 MsG0180004085.01.T01:intron 50.0%
AAGAGGTAGACCAGGGAAGC+AGG + Chr1:73079186-73079205 MsG0180004085.01.T01:CDS 55.0%
GAAAGCTGAACCTGCTTCCC+TGG - Chr1:73079199-73079218 None:intergenic 55.0%
GCTGCGGCAAAATGCTTTGG+TGG + Chr1:73079648-73079667 MsG0180004085.01.T01:intron 55.0%
TCATCAATGAGAGCCGCCAC+AGG - Chr1:73080590-73080609 None:intergenic 55.0%
! TACATGGTCTAGGGCGGTTG+CGG + Chr1:73079621-73079640 MsG0180004085.01.T01:intron 55.0%
!!! CTGAGGCTTTTCGAGTACGG+TGG + Chr1:73080326-73080345 MsG0180004085.01.T01:CDS 55.0%
GGTTGGGGAGAAAGCGAGCG+TGG + Chr1:73080752-73080771 MsG0180004085.01.T01:CDS 65.0%
! GGTCTAGGGCGGTTGCGGTT+AGG + Chr1:73079626-73079645 MsG0180004085.01.T01:intron 65.0%
GGGCGGTTGCGGTTAGGCTG+CGG + Chr1:73079632-73079651 MsG0180004085.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 73078902 73081669 73078902 ID=MsG0180004085.01;Name=MsG0180004085.01
Chr1 mRNA 73078902 73081669 73078902 ID=MsG0180004085.01.T01;Parent=MsG0180004085.01;Name=MsG0180004085.01.T01;_AED=0.23;_eAED=0.23;_QI=237|1|1|1|1|1|3|485|320
Chr1 exon 73078902 73079313 73078902 ID=MsG0180004085.01.T01:exon:5189;Parent=MsG0180004085.01.T01
Chr1 exon 73080297 73080856 73080297 ID=MsG0180004085.01.T01:exon:5190;Parent=MsG0180004085.01.T01
Chr1 exon 73080957 73081669 73080957 ID=MsG0180004085.01.T01:exon:5191;Parent=MsG0180004085.01.T01
Chr1 five_prime_UTR 73078902 73079138 73078902 ID=MsG0180004085.01.T01:five_prime_utr;Parent=MsG0180004085.01.T01
Chr1 CDS 73079139 73079313 73079139 ID=MsG0180004085.01.T01:cds;Parent=MsG0180004085.01.T01
Chr1 CDS 73080297 73080856 73080297 ID=MsG0180004085.01.T01:cds;Parent=MsG0180004085.01.T01
Chr1 CDS 73080957 73081184 73080957 ID=MsG0180004085.01.T01:cds;Parent=MsG0180004085.01.T01
Chr1 three_prime_UTR 73081185 73081669 73081185 ID=MsG0180004085.01.T01:three_prime_utr;Parent=MsG0180004085.01.T01
Gene Sequence

>MsG0180004085.01.T01

ATGGAACGTGGAGTTGTTGATGGTATTATCAATAGGTTACTTGAAGTAAGAGGTAGACCAGGGAAGCAGGTTCAGCTTTCTGAAGCAGAAATCAAACAGCTTTGTCTTGTCTCTAAAGATATCTTCATGAACCAACCTAATCTCTTGAAACTAGAAGCACCTATTAAGATCTGTGGAGATATTCATGGTCAATATTCCGACCTTCTGAGGCTTTTCGAGTACGGTGGATTTCCTCCTCGCTCGAATTATTTATTTTTAGGAGACTATGTTGATCGCGGAAAACAAAGTCTAGAAACAATATGTCTTCTTCTGGCATATAAAATAAAATATCCTAAAAACTTTTTCCTTCTAAGGGGTAACCACGAATGTGCTTCCATAAACCGTATCTACGGATTTTATGATGAATGTAAAAGGAGATACAATGTGAAGCTATGGAAAATGTTTACAGATTGTTTCAATTGTTTGCCTGTGGCGGCTCTCATTGATGAAAAGATTATCTGTATGCATGGTGGACTCTCTCCTGAATTACACGATTTAAATCAGATAAAGAATTTGCGTCGTCCGTGTGAAGTTCCTGAATCTGGTCTATTATGTGACCTCTTATGGTCTGATCCTAGTAGTGATGTTCGTGGTTGGGGAGAAAGCGAGCGTGGAGTTTCATATACATTTGGTGCCGATAGGGTTAAAGAGTTTCTTCAAAAGCATGATCTTGATTTGATTTGCAGGGCTCATCAGGTTGTGGAAGACGGATACGAGTTCTTTGCGAATAGACAACTTGTAACAATCTTTTCAGCACCTAATTACTGTGGAGAATTTGACAATGCTGGTGCTATGATGACTGTAAATGAATCACTTGTGTGTTCTTTTCAAATACTGAAGCCTCTTGATAAAAAGCCTAAGTTTAGCTTTGGAAGCACAACTACAGTCAAGTCTAGTAGTCCAACAAAATTCAAGGTATTTTGA

Protein sequence

>MsG0180004085.01.T01

MERGVVDGIINRLLEVRGRPGKQVQLSEAEIKQLCLVSKDIFMNQPNLLKLEAPIKICGDIHGQYSDLLRLFEYGGFPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPKNFFLLRGNHECASINRIYGFYDECKRRYNVKLWKMFTDCFNCLPVAALIDEKIICMHGGLSPELHDLNQIKNLRRPCEVPESGLLCDLLWSDPSSDVRGWGESERGVSYTFGADRVKEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMTVNESLVCSFQILKPLDKKPKFSFGSTTTVKSSSPTKFKVF*