Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011338.01.T01 | XP_003597790.2 | 93.956 | 364 | 22 | 0 | 1 | 364 | 1 | 364 | 0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011338.01.T01 | Q9M8L2 | 47.439 | 371 | 171 | 6 | 1 | 364 | 1 | 354 | 2.20E-119 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011338.01.T01 | G7II60 | 93.956 | 364 | 22 | 0 | 1 | 364 | 1 | 364 | 0.0 | 712 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000337.01 | MsG0280011338.01 | 0.818704 | 1.706240e-52 | 1.286526e-49 |
| MsG0280011338.01 | MsG0380014767.01 | 0.845728 | 3.388379e-59 | 5.700510e-56 |
| MsG0280011338.01 | MsG0380015697.01 | -0.807007 | 6.238027e-50 | 3.435721e-47 |
| MsG0280011338.01 | MsG0380016226.01 | 0.810496 | 1.119850e-50 | 6.760631e-48 |
| MsG0280011338.01 | MsG0480023819.01 | 0.827055 | 1.932642e-54 | 1.844935e-51 |
| MsG0280011338.01 | MsG0580029275.01 | 0.869253 | 3.556483e-66 | 1.325771e-62 |
| MsG0280011338.01 | MsG0780041652.01 | 0.818884 | 1.552637e-52 | 1.176664e-49 |
| MsG0280011338.01 | MsG0880046422.01 | -0.824572 | 7.507120e-54 | 6.675683e-51 |
| MsG0280009971.01 | MsG0280011338.01 | 0.801542 | 8.571905e-49 | 4.104352e-46 |
| MsG0280010244.01 | MsG0280011338.01 | 0.839442 | 1.581182e-57 | 2.183869e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011338.01.T01 | MTR_2g102370 | 93.956 | 364 | 22 | 0 | 1 | 364 | 1 | 364 | 0.0 | 712 |
| MsG0280011338.01.T01 | MTR_4g011900 | 59.615 | 364 | 141 | 2 | 1 | 364 | 3 | 360 | 1.16e-159 | 452 |
| MsG0280011338.01.T01 | MTR_2g102355 | 88.525 | 122 | 14 | 0 | 176 | 297 | 46 | 167 | 4.91e-75 | 230 |
| MsG0280011338.01.T01 | MTR_8g085650 | 36.413 | 368 | 199 | 9 | 1 | 364 | 5 | 341 | 4.89e-61 | 199 |
| MsG0280011338.01.T01 | MTR_7g095220 | 26.866 | 268 | 157 | 8 | 2 | 261 | 3 | 239 | 9.82e-20 | 89.4 |
| MsG0280011338.01.T01 | MTR_8g085600 | 26.733 | 303 | 179 | 11 | 3 | 297 | 77 | 344 | 9.04e-17 | 81.6 |
| MsG0280011338.01.T01 | MTR_4g108280 | 22.775 | 382 | 233 | 10 | 3 | 362 | 31 | 372 | 2.43e-14 | 73.9 |
| MsG0280011338.01.T01 | MTR_0105s0170 | 27.586 | 261 | 151 | 10 | 3 | 260 | 102 | 327 | 3.42e-13 | 70.9 |
| MsG0280011338.01.T01 | MTR_0105s0130 | 25.283 | 265 | 152 | 9 | 3 | 260 | 89 | 314 | 4.74e-13 | 70.5 |
| MsG0280011338.01.T01 | MTR_0345s0010 | 25.283 | 265 | 152 | 9 | 3 | 260 | 89 | 314 | 4.83e-13 | 70.5 |
| MsG0280011338.01.T01 | MTR_1330s0010 | 25.283 | 265 | 152 | 9 | 3 | 260 | 102 | 327 | 6.46e-13 | 70.1 |
| MsG0280011338.01.T01 | MTR_0105s0040 | 27.203 | 261 | 152 | 10 | 3 | 260 | 187 | 412 | 1.74e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011338.01.T01 | AT1G80440 | 47.439 | 371 | 171 | 6 | 1 | 364 | 1 | 354 | 2.24e-120 | 352 |
| MsG0280011338.01.T01 | AT1G15670 | 48.229 | 367 | 179 | 5 | 1 | 364 | 1 | 359 | 8.84e-119 | 348 |
| MsG0280011338.01.T01 | AT2G44130 | 33.333 | 291 | 157 | 6 | 2 | 268 | 18 | 295 | 2.87e-42 | 152 |
| MsG0280011338.01.T01 | AT3G59940 | 29.177 | 401 | 228 | 10 | 2 | 353 | 14 | 407 | 5.07e-42 | 152 |
| MsG0280011338.01.T01 | AT3G63220 | 25.000 | 332 | 197 | 9 | 3 | 323 | 4 | 294 | 1.11e-18 | 86.7 |
| MsG0280011338.01.T01 | AT3G63220 | 25.000 | 332 | 197 | 9 | 3 | 323 | 11 | 301 | 1.45e-18 | 86.3 |
| MsG0280011338.01.T01 | AT3G63220 | 25.000 | 332 | 197 | 9 | 3 | 323 | 11 | 301 | 1.45e-18 | 86.3 |
| MsG0280011338.01.T01 | AT2G02870 | 24.727 | 275 | 169 | 9 | 3 | 276 | 117 | 354 | 3.16e-15 | 77.0 |
| MsG0280011338.01.T01 | AT2G02870 | 24.727 | 275 | 169 | 9 | 3 | 276 | 117 | 354 | 3.16e-15 | 77.0 |
| MsG0280011338.01.T01 | AT2G02870 | 24.727 | 275 | 169 | 9 | 3 | 276 | 117 | 354 | 3.16e-15 | 77.0 |
| MsG0280011338.01.T01 | AT1G14330 | 27.027 | 259 | 152 | 10 | 3 | 258 | 94 | 318 | 3.10e-14 | 73.9 |
| MsG0280011338.01.T01 | AT1G67480 | 29.130 | 230 | 137 | 6 | 3 | 230 | 39 | 244 | 1.48e-13 | 71.6 |
| MsG0280011338.01.T01 | AT1G67480 | 29.130 | 230 | 137 | 6 | 3 | 230 | 39 | 244 | 1.48e-13 | 71.6 |
| MsG0280011338.01.T01 | AT1G67480 | 29.130 | 230 | 137 | 6 | 3 | 230 | 39 | 244 | 1.48e-13 | 71.6 |
Find 124 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTACTATGGAGTTGATTTC+AGG | 0.182172 | 2:-82612426 | None:intergenic |
| TTGATTGGGTCTAGTGGGTT+TGG | 0.258847 | 2:-82611460 | MsG0280011338.01.T01:CDS |
| GGGTAACCCTTCACTTAATT+CGG | 0.272688 | 2:+82612116 | None:intergenic |
| TGGAAACTGAAACAGGTATT+TGG | 0.276490 | 2:-82612158 | MsG0280011338.01.T01:CDS |
| TTTGAAGCTTTCCATGAATC+AGG | 0.295391 | 2:+82612036 | None:intergenic |
| AGTTTCATACCAGGAATTTC+CGG | 0.301498 | 2:-82612367 | MsG0280011338.01.T01:CDS |
| TGGGTTTGGAGAACCTTATA+TGG | 0.316034 | 2:-82611446 | MsG0280011338.01.T01:CDS |
| CACTCTCGTGCTATGTCTTC+TGG | 0.327599 | 2:+82612399 | None:intergenic |
| TCACGCTCCCTCGCCATATC+AGG | 0.334734 | 2:+82611817 | None:intergenic |
| AATACATTTAGTTTATAAAT+CGG | 0.342579 | 2:+82612180 | None:intergenic |
| TACTCCAAACACCATTCTTC+AGG | 0.353583 | 2:+82611410 | None:intergenic |
| TCCAACACAAAGCCCATATA+AGG | 0.360295 | 2:+82611433 | None:intergenic |
| AGGGTATGATCTAGTTGTTA+TGG | 0.362184 | 2:-82612070 | MsG0280011338.01.T01:CDS |
| TGGCTACCGCCGGAAATTCC+TGG | 0.381513 | 2:+82612358 | None:intergenic |
| GATTTATAAACTAAATGTAT+TGG | 0.393923 | 2:-82612178 | MsG0280011338.01.T01:CDS |
| AGACATAGCACGAGAGTGTT+TGG | 0.398695 | 2:-82612394 | MsG0280011338.01.T01:CDS |
| GCAGATGCATTGTTATTGAT+TGG | 0.405993 | 2:-82611475 | MsG0280011338.01.T01:CDS |
| TTCACCGGCCACGTTCAATC+TGG | 0.407052 | 2:-82611367 | MsG0280011338.01.T01:CDS |
| TGTTGCTTGTGTGGGAGCTT+GGG | 0.410270 | 2:-82611497 | MsG0280011338.01.T01:CDS |
| GGGTATGATCTAGTTGTTAT+GGG | 0.418612 | 2:-82612069 | MsG0280011338.01.T01:CDS |
| CAGATGCATTGTTATTGATT+GGG | 0.419195 | 2:-82611474 | MsG0280011338.01.T01:CDS |
| GTGGATCCCGCTTCCTGATA+TGG | 0.419518 | 2:-82611830 | MsG0280011338.01.T01:CDS |
| GTGGAGGTGGGGTCCGGTCG+AGG | 0.421615 | 2:-82611671 | MsG0280011338.01.T01:CDS |
| GAGAAGAATGTACATGTGTA+AGG | 0.422768 | 2:-82611590 | MsG0280011338.01.T01:CDS |
| ATACATTTAGTTTATAAATC+GGG | 0.423905 | 2:+82612181 | None:intergenic |
| TCGATGTAGCCACGTGGAGG+TGG | 0.423970 | 2:-82611684 | MsG0280011338.01.T01:CDS |
| GGTAACCCTTCACTTAATTC+GGG | 0.425963 | 2:+82612117 | None:intergenic |
| AGGTGGTGGCGAAGGTGCCT+AGG | 0.429241 | 2:-82611531 | MsG0280011338.01.T01:CDS |
| GAGGATGGGACCCTGATTCA+TGG | 0.430085 | 2:-82612047 | MsG0280011338.01.T01:CDS |
| TATCTGCTACGTGGCATCGC+GGG | 0.433189 | 2:-82611990 | MsG0280011338.01.T01:CDS |
| GATGATGTGGTGGCATTGGA+TGG | 0.436126 | 2:-82611565 | MsG0280011338.01.T01:CDS |
| TTGTGTGGATGGTTGTGAAT+TGG | 0.440798 | 2:-82611614 | MsG0280011338.01.T01:CDS |
| TTCATGGAAAGCTTCAAATT+CGG | 0.444403 | 2:-82612031 | MsG0280011338.01.T01:CDS |
| ACCTTATATGGGCTTTGTGT+TGG | 0.447831 | 2:-82611434 | MsG0280011338.01.T01:CDS |
| TGTTATTGATTGGGTCTAGT+GGG | 0.455627 | 2:-82611465 | MsG0280011338.01.T01:CDS |
| AATGTATTGGAAACTGAAAC+AGG | 0.458468 | 2:-82612165 | MsG0280011338.01.T01:CDS |
| ATGTTGCTTGTGTGGGAGCT+TGG | 0.459885 | 2:-82611498 | MsG0280011338.01.T01:CDS |
| GCAGGGCCCACCAGGCATAT+CGG | 0.462663 | 2:+82611966 | None:intergenic |
| GGGTTTGGAGAACCTTATAT+GGG | 0.462959 | 2:-82611445 | MsG0280011338.01.T01:CDS |
| CGCCGGAGTTTCGCCGTGTA+CGG | 0.467359 | 2:-82612302 | MsG0280011338.01.T01:CDS |
| CATCGCGGGGCCGATATGCC+TGG | 0.468580 | 2:-82611976 | MsG0280011338.01.T01:CDS |
| CAACCATCCACACAAGTCCT+TGG | 0.468884 | 2:+82611622 | None:intergenic |
| TGGACCTGAAGAATGGTGTT+TGG | 0.471703 | 2:-82611414 | MsG0280011338.01.T01:CDS |
| GGGTGATGATGTGGTGGCAT+TGG | 0.471752 | 2:-82611569 | MsG0280011338.01.T01:CDS |
| CGTGCCAGAGCCATTGTCTC+CGG | 0.476636 | 2:+82611771 | None:intergenic |
| CGATGTAGCCACGTGGAGGT+GGG | 0.477914 | 2:-82611683 | MsG0280011338.01.T01:CDS |
| AGCCACGTGGAGGTGGGGTC+CGG | 0.487081 | 2:-82611677 | MsG0280011338.01.T01:CDS |
| ATCTAGTTGTTATGGGAGGA+TGG | 0.491431 | 2:-82612062 | MsG0280011338.01.T01:CDS |
| TGTAGCTTTAGCCAATAAAC+CGG | 0.493397 | 2:+82612209 | None:intergenic |
| TTGCTCACGGTGGCTACCGC+CGG | 0.494147 | 2:+82612348 | None:intergenic |
| TTTGTCAAATTGCGGGTGTA+GGG | 0.495373 | 2:-82612089 | MsG0280011338.01.T01:CDS |
| CGAAGGTGCCTAGGGAGATA+AGG | 0.500530 | 2:-82611522 | MsG0280011338.01.T01:CDS |
| TGCATCAGATCATGAAAGAA+TGG | 0.501033 | 2:-82611929 | MsG0280011338.01.T01:CDS |
| CGCCGTGTACGGAGGAGTAC+AGG | 0.505353 | 2:-82612291 | MsG0280011338.01.T01:CDS |
| TTTGTGTTGGACCTGAAGAA+TGG | 0.506335 | 2:-82611421 | MsG0280011338.01.T01:CDS |
| TGTTTGCCACCCTTTGCTCA+CGG | 0.517498 | 2:+82612335 | None:intergenic |
| GGTGGTGGCGAAGGTGCCTA+GGG | 0.518802 | 2:-82611530 | MsG0280011338.01.T01:CDS |
| GAAAGAATGGTCTATGTGGC+AGG | 0.519321 | 2:-82611916 | MsG0280011338.01.T01:CDS |
| TCACTTAATTCGGGTCCCAT+TGG | 0.527061 | 2:+82612126 | None:intergenic |
| CGGTAGCCACCGTGAGCAAA+GGG | 0.527349 | 2:-82612344 | MsG0280011338.01.T01:CDS |
| TTGTTATTGATTGGGTCTAG+TGG | 0.527443 | 2:-82611466 | MsG0280011338.01.T01:CDS |
| CCCTCGCCATATCAGGAAGC+GGG | 0.530716 | 2:+82611824 | None:intergenic |
| TGTGCCGGAGACAATGGCTC+TGG | 0.531010 | 2:-82611775 | MsG0280011338.01.T01:CDS |
| GCGGTAGCCACCGTGAGCAA+AGG | 0.533392 | 2:-82612345 | MsG0280011338.01.T01:CDS |
| ATTTGGAGCGAGTTACCAAT+GGG | 0.540800 | 2:-82612141 | MsG0280011338.01.T01:CDS |
| TGGTGACACGTGGAAGGTGG+TGG | 0.543700 | 2:-82611545 | MsG0280011338.01.T01:CDS |
| GGCACGATCAAAGTTGTTGG+TGG | 0.544929 | 2:-82611754 | MsG0280011338.01.T01:CDS |
| TATTTGGAGCGAGTTACCAA+TGG | 0.546070 | 2:-82612142 | MsG0280011338.01.T01:CDS |
| ACCCGCAATTTGACAAAACA+AGG | 0.548302 | 2:+82612095 | None:intergenic |
| GCAACCAGATTGAACGTGGC+CGG | 0.553033 | 2:+82611363 | None:intergenic |
| TCCCTCGCCATATCAGGAAG+CGG | 0.557334 | 2:+82611823 | None:intergenic |
| CTCCGTACACGGCGAAACTC+CGG | 0.560050 | 2:+82612300 | None:intergenic |
| CACGTGGAAGGTGGTGGCGA+AGG | 0.560862 | 2:-82611539 | MsG0280011338.01.T01:CDS |
| TCCCGCTTCCTGATATGGCG+AGG | 0.561759 | 2:-82611825 | MsG0280011338.01.T01:CDS |
| TTGAAGCTTTCCATGAATCA+GGG | 0.562384 | 2:+82612037 | None:intergenic |
| GATAAGGAATGTTGCTTGTG+TGG | 0.563323 | 2:-82611506 | MsG0280011338.01.T01:CDS |
| TCTGGCACGATCAAAGTTGT+TGG | 0.564275 | 2:-82611757 | MsG0280011338.01.T01:CDS |
| CGCGGGGCCGATATGCCTGG+TGG | 0.565185 | 2:-82611973 | MsG0280011338.01.T01:CDS |
| ATCTGCTACGTGGCATCGCG+GGG | 0.565587 | 2:-82611989 | MsG0280011338.01.T01:CDS |
| ATTTGGACTGAACCGTGACT+AGG | 0.569932 | 2:+82612253 | None:intergenic |
| TGGATGATGCCACATGTCCA+AGG | 0.571672 | 2:-82611639 | MsG0280011338.01.T01:CDS |
| GATGTAGCCACGTGGAGGTG+GGG | 0.572404 | 2:-82611682 | MsG0280011338.01.T01:CDS |
| AGAAGAATGTACATGTGTAA+GGG | 0.581931 | 2:-82611589 | MsG0280011338.01.T01:CDS |
| TCTAGTTGTTATGGGAGGAT+GGG | 0.587902 | 2:-82612061 | MsG0280011338.01.T01:CDS |
| GCAACATTCCTTATCTCCCT+AGG | 0.592170 | 2:+82611514 | None:intergenic |
| CACACAAGTCCTTGGACATG+TGG | 0.595115 | 2:+82611630 | None:intergenic |
| GGATATCGTACGGAGATGCA+AGG | 0.595851 | 2:-82611733 | MsG0280011338.01.T01:CDS |
| CGGAGTTTCGCCGTGTACGG+AGG | 0.596383 | 2:-82612299 | MsG0280011338.01.T01:CDS |
| AGTTGTTGGTGGATATCGTA+CGG | 0.598708 | 2:-82611743 | MsG0280011338.01.T01:CDS |
| TGCTCAGAAAATCCTAGTCA+CGG | 0.599471 | 2:-82612265 | MsG0280011338.01.T01:CDS |
| GCGGGGCCGATATGCCTGGT+GGG | 0.599866 | 2:-82611972 | MsG0280011338.01.T01:CDS |
| CCCGCTTCCTGATATGGCGA+GGG | 0.599930 | 2:-82611824 | MsG0280011338.01.T01:CDS |
| TGTCCAAGGACTTGTGTGGA+TGG | 0.600952 | 2:-82611625 | MsG0280011338.01.T01:CDS |
| GAAAACCCAGAAAATTTCAC+CGG | 0.601148 | 2:-82611382 | MsG0280011338.01.T01:CDS |
| ATTGGATGGTGACACGTGGA+AGG | 0.617577 | 2:-82611551 | MsG0280011338.01.T01:CDS |
| GAGGTGGGGTCCGGTCGAGG+AGG | 0.618236 | 2:-82611668 | MsG0280011338.01.T01:CDS |
| ATGGGACCCGAATTAAGTGA+AGG | 0.619213 | 2:-82612123 | MsG0280011338.01.T01:CDS |
| ATAAGGAATGTTGCTTGTGT+GGG | 0.622737 | 2:-82611505 | MsG0280011338.01.T01:CDS |
| TCATGAAAGAATGGTCTATG+TGG | 0.631561 | 2:-82611920 | MsG0280011338.01.T01:CDS |
| GGATGGTGACACGTGGAAGG+TGG | 0.634958 | 2:-82611548 | MsG0280011338.01.T01:CDS |
| TATGATCTAGTTGTTATGGG+AGG | 0.636400 | 2:-82612066 | MsG0280011338.01.T01:CDS |
| GCAAACAGAGATTCAAACGC+CGG | 0.637123 | 2:-82612319 | MsG0280011338.01.T01:CDS |
| GACCTGTACTCCTCCGTACA+CGG | 0.637331 | 2:+82612289 | None:intergenic |
| GATATCGTACGGAGATGCAA+GGG | 0.639764 | 2:-82611732 | MsG0280011338.01.T01:CDS |
| TGGGACCCGAATTAAGTGAA+GGG | 0.640598 | 2:-82612122 | MsG0280011338.01.T01:CDS |
| CATGTGTAAGGGTGATGATG+TGG | 0.641473 | 2:-82611578 | MsG0280011338.01.T01:CDS |
| GTCAGCATTTGCTTACGATG+TGG | 0.642705 | 2:-82611863 | MsG0280011338.01.T01:CDS |
| TAGCCACCGTGAGCAAAGGG+TGG | 0.650702 | 2:-82612341 | MsG0280011338.01.T01:CDS |
| TTTGGTTCGAGTTTCATACC+AGG | 0.651758 | 2:-82612376 | MsG0280011338.01.T01:CDS |
| GACCGGACCCCACCTCCACG+TGG | 0.662176 | 2:+82611675 | None:intergenic |
| GCGATTCGAACGTAGTGCTG+AGG | 0.664187 | 2:-82611710 | MsG0280011338.01.T01:CDS |
| ACGATGTGGCAAATGATGTG+TGG | 0.666045 | 2:-82611849 | MsG0280011338.01.T01:CDS |
| AAAAGCAACCAGATTGAACG+TGG | 0.667532 | 2:+82611359 | None:intergenic |
| TTATCTGCTACGTGGCATCG+CGG | 0.668601 | 2:-82611991 | MsG0280011338.01.T01:CDS |
| GTGTAAGGGTGATGATGTGG+TGG | 0.677538 | 2:-82611575 | MsG0280011338.01.T01:CDS |
| AGAATGGTCTATGTGGCAGG+AGG | 0.679340 | 2:-82611913 | MsG0280011338.01.T01:CDS |
| CCCGCAATTTGACAAAACAA+GGG | 0.679482 | 2:+82612096 | None:intergenic |
| TTGCCACCCTTTGCTCACGG+TGG | 0.683953 | 2:+82612338 | None:intergenic |
| AGTTCGATGTAGCCACGTGG+AGG | 0.685810 | 2:-82611687 | MsG0280011338.01.T01:CDS |
| TTCATACCAGGAATTTCCGG+CGG | 0.694230 | 2:-82612364 | MsG0280011338.01.T01:CDS |
| TGGCATTGGATGGTGACACG+TGG | 0.697013 | 2:-82611555 | MsG0280011338.01.T01:CDS |
| TGTGGCAGGAGGACATGACG+AGG | 0.708701 | 2:-82611902 | MsG0280011338.01.T01:CDS |
| AGGAGTTCGATGTAGCCACG+TGG | 0.736829 | 2:-82611690 | MsG0280011338.01.T01:CDS |
| CACATGTCCAAGGACTTGTG+TGG | 0.739846 | 2:-82611629 | MsG0280011338.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATACATTTAGTTTATAAAT+CGG | + | Chr2:82611591-82611610 | None:intergenic | 10.0% |
| !! | GATTTATAAACTAAATGTAT+TGG | - | Chr2:82611590-82611609 | MsG0280011338.01.T01:CDS | 15.0% |
| !!! | ATACATTTAGTTTATAAATC+GGG | + | Chr2:82611590-82611609 | None:intergenic | 15.0% |
| !!! | ATAATTTTTTATCTGCTACG+TGG | - | Chr2:82611769-82611788 | MsG0280011338.01.T01:CDS | 25.0% |
| !!! | GCTTTTTTCTGAATCAAATT+TGG | + | Chr2:82611535-82611554 | None:intergenic | 25.0% |
| AATGTATTGGAAACTGAAAC+AGG | - | Chr2:82611603-82611622 | MsG0280011338.01.T01:CDS | 30.0% | |
| AGAAGAATGTACATGTGTAA+GGG | - | Chr2:82612179-82612198 | MsG0280011338.01.T01:CDS | 30.0% | |
| GATTCAGAAAAAAGCAAAAC+CGG | - | Chr2:82611540-82611559 | MsG0280011338.01.T01:CDS | 30.0% | |
| TTCATGGAAAGCTTCAAATT+CGG | - | Chr2:82611737-82611756 | MsG0280011338.01.T01:CDS | 30.0% | |
| ! | AAAAAGCAAAACCGGTTTAT+TGG | - | Chr2:82611548-82611567 | MsG0280011338.01.T01:CDS | 30.0% |
| ! | CAGATGCATTGTTATTGATT+GGG | - | Chr2:82612294-82612313 | MsG0280011338.01.T01:CDS | 30.0% |
| AGGGTATGATCTAGTTGTTA+TGG | - | Chr2:82611698-82611717 | MsG0280011338.01.T01:CDS | 35.0% | |
| AGTTTCATACCAGGAATTTC+CGG | - | Chr2:82611401-82611420 | MsG0280011338.01.T01:CDS | 35.0% | |
| GAAAACCCAGAAAATTTCAC+CGG | - | Chr2:82612386-82612405 | MsG0280011338.01.T01:CDS | 35.0% | |
| GAGAAGAATGTACATGTGTA+AGG | - | Chr2:82612178-82612197 | MsG0280011338.01.T01:CDS | 35.0% | |
| GGGTATGATCTAGTTGTTAT+GGG | - | Chr2:82611699-82611718 | MsG0280011338.01.T01:CDS | 35.0% | |
| TATGATCTAGTTGTTATGGG+AGG | - | Chr2:82611702-82611721 | MsG0280011338.01.T01:CDS | 35.0% | |
| TCATGAAAGAATGGTCTATG+TGG | - | Chr2:82611848-82611867 | MsG0280011338.01.T01:CDS | 35.0% | |
| TGCATCAGATCATGAAAGAA+TGG | - | Chr2:82611839-82611858 | MsG0280011338.01.T01:CDS | 35.0% | |
| TGGAAACTGAAACAGGTATT+TGG | - | Chr2:82611610-82611629 | MsG0280011338.01.T01:CDS | 35.0% | |
| TTGAAGCTTTCCATGAATCA+GGG | + | Chr2:82611734-82611753 | None:intergenic | 35.0% | |
| ! | ATAAGGAATGTTGCTTGTGT+GGG | - | Chr2:82612263-82612282 | MsG0280011338.01.T01:CDS | 35.0% |
| ! | GCAGATGCATTGTTATTGAT+TGG | - | Chr2:82612293-82612312 | MsG0280011338.01.T01:CDS | 35.0% |
| ! | TGTAAGATAGTGTTTTGTGC+CGG | - | Chr2:82611978-82611997 | MsG0280011338.01.T01:CDS | 35.0% |
| ! | TGTTATTGATTGGGTCTAGT+GGG | - | Chr2:82612303-82612322 | MsG0280011338.01.T01:CDS | 35.0% |
| ! | TTGTTATTGATTGGGTCTAG+TGG | - | Chr2:82612302-82612321 | MsG0280011338.01.T01:CDS | 35.0% |
| ! | TTTGAAGCTTTCCATGAATC+AGG | + | Chr2:82611735-82611754 | None:intergenic | 35.0% |
| !! | TGTAGCTTTAGCCAATAAAC+CGG | + | Chr2:82611562-82611581 | None:intergenic | 35.0% |
| !!! | ACCCTTGTTTTGTCAAATTG+CGG | - | Chr2:82611671-82611690 | MsG0280011338.01.T01:CDS | 35.0% |
| AAAAGCAACCAGATTGAACG+TGG | + | Chr2:82612412-82612431 | None:intergenic | 40.0% | |
| ACCCGCAATTTGACAAAACA+AGG | + | Chr2:82611676-82611695 | None:intergenic | 40.0% | |
| ATCTAGTTGTTATGGGAGGA+TGG | - | Chr2:82611706-82611725 | MsG0280011338.01.T01:CDS | 40.0% | |
| CCCGCAATTTGACAAAACAA+GGG | + | Chr2:82611675-82611694 | None:intergenic | 40.0% | |
| GCACAAGAGAAAAATGTGCA+GGG | + | Chr2:82611822-82611841 | None:intergenic | 40.0% | |
| GGGTAACCCTTCACTTAATT+CGG | + | Chr2:82611655-82611674 | None:intergenic | 40.0% | |
| GGGTTTGGAGAACCTTATAT+GGG | - | Chr2:82612323-82612342 | MsG0280011338.01.T01:CDS | 40.0% | |
| GGTAACCCTTCACTTAATTC+GGG | + | Chr2:82611654-82611673 | None:intergenic | 40.0% | |
| TACTCCAAACACCATTCTTC+AGG | + | Chr2:82612361-82612380 | None:intergenic | 40.0% | |
| TCCAACACAAAGCCCATATA+AGG | + | Chr2:82612338-82612357 | None:intergenic | 40.0% | |
| TCTAGTTGTTATGGGAGGAT+GGG | - | Chr2:82611707-82611726 | MsG0280011338.01.T01:CDS | 40.0% | |
| TGCACAAGAGAAAAATGTGC+AGG | + | Chr2:82611823-82611842 | None:intergenic | 40.0% | |
| TGCTCAGAAAATCCTAGTCA+CGG | - | Chr2:82611503-82611522 | MsG0280011338.01.T01:CDS | 40.0% | |
| TGGGTTTGGAGAACCTTATA+TGG | - | Chr2:82612322-82612341 | MsG0280011338.01.T01:CDS | 40.0% | |
| TTGTGTGGATGGTTGTGAAT+TGG | - | Chr2:82612154-82612173 | MsG0280011338.01.T01:CDS | 40.0% | |
| TTTGTCAAATTGCGGGTGTA+GGG | - | Chr2:82611679-82611698 | MsG0280011338.01.T01:CDS | 40.0% | |
| TTTGTGTTGGACCTGAAGAA+TGG | - | Chr2:82612347-82612366 | MsG0280011338.01.T01:CDS | 40.0% | |
| ! | ACCTTATATGGGCTTTGTGT+TGG | - | Chr2:82612334-82612353 | MsG0280011338.01.T01:CDS | 40.0% |
| ! | AGTTGTTGGTGGATATCGTA+CGG | - | Chr2:82612025-82612044 | MsG0280011338.01.T01:CDS | 40.0% |
| ! | ATTTGGAGCGAGTTACCAAT+GGG | - | Chr2:82611627-82611646 | MsG0280011338.01.T01:CDS | 40.0% |
| ! | GATAAGGAATGTTGCTTGTG+TGG | - | Chr2:82612262-82612281 | MsG0280011338.01.T01:CDS | 40.0% |
| ! | TATTTGGAGCGAGTTACCAA+TGG | - | Chr2:82611626-82611645 | MsG0280011338.01.T01:CDS | 40.0% |
| ! | TTTGGTTCGAGTTTCATACC+AGG | - | Chr2:82611392-82611411 | MsG0280011338.01.T01:CDS | 40.0% |
| ! | TTTTGTCAAATTGCGGGTGT+AGG | - | Chr2:82611678-82611697 | MsG0280011338.01.T01:CDS | 40.0% |
| !!! | CCCTTGTTTTGTCAAATTGC+GGG | - | Chr2:82611672-82611691 | MsG0280011338.01.T01:CDS | 40.0% |
| !!! | CGTTCAATCTGGTTGCTTTT+TGG | - | Chr2:82612412-82612431 | MsG0280011338.01.T01:CDS | 40.0% |
| ACGATGTGGCAAATGATGTG+TGG | - | Chr2:82611919-82611938 | MsG0280011338.01.T01:CDS | 45.0% | |
| ATGGGACCCGAATTAAGTGA+AGG | - | Chr2:82611645-82611664 | MsG0280011338.01.T01:CDS | 45.0% | |
| ATTTGGACTGAACCGTGACT+AGG | + | Chr2:82611518-82611537 | None:intergenic | 45.0% | |
| GAAAGAATGGTCTATGTGGC+AGG | - | Chr2:82611852-82611871 | MsG0280011338.01.T01:CDS | 45.0% | |
| GATATCGTACGGAGATGCAA+GGG | - | Chr2:82612036-82612055 | MsG0280011338.01.T01:CDS | 45.0% | |
| GCAAACAGAGATTCAAACGC+CGG | - | Chr2:82611449-82611468 | MsG0280011338.01.T01:CDS | 45.0% | |
| GCAACATTCCTTATCTCCCT+AGG | + | Chr2:82612257-82612276 | None:intergenic | 45.0% | |
| GTCAGCATTTGCTTACGATG+TGG | - | Chr2:82611905-82611924 | MsG0280011338.01.T01:CDS | 45.0% | |
| TCACTTAATTCGGGTCCCAT+TGG | + | Chr2:82611645-82611664 | None:intergenic | 45.0% | |
| TCTGGCACGATCAAAGTTGT+TGG | - | Chr2:82612011-82612030 | MsG0280011338.01.T01:CDS | 45.0% | |
| TGGACCTGAAGAATGGTGTT+TGG | - | Chr2:82612354-82612373 | MsG0280011338.01.T01:CDS | 45.0% | |
| TGGGACCCGAATTAAGTGAA+GGG | - | Chr2:82611646-82611665 | MsG0280011338.01.T01:CDS | 45.0% | |
| TTCATACCAGGAATTTCCGG+CGG | - | Chr2:82611404-82611423 | MsG0280011338.01.T01:CDS | 45.0% | |
| ! | CATGTGTAAGGGTGATGATG+TGG | - | Chr2:82612190-82612209 | MsG0280011338.01.T01:CDS | 45.0% |
| !! | AGACATAGCACGAGAGTGTT+TGG | - | Chr2:82611374-82611393 | MsG0280011338.01.T01:CDS | 45.0% |
| !! | TTGATTGGGTCTAGTGGGTT+TGG | - | Chr2:82612308-82612327 | MsG0280011338.01.T01:CDS | 45.0% |
| AGAATGGTCTATGTGGCAGG+AGG | - | Chr2:82611855-82611874 | MsG0280011338.01.T01:CDS | 50.0% | |
| ATTGGATGGTGACACGTGGA+AGG | - | Chr2:82612217-82612236 | MsG0280011338.01.T01:CDS | 50.0% | |
| CAACCATCCACACAAGTCCT+TGG | + | Chr2:82612149-82612168 | None:intergenic | 50.0% | |
| CACACAAGTCCTTGGACATG+TGG | + | Chr2:82612141-82612160 | None:intergenic | 50.0% | |
| CACATGTCCAAGGACTTGTG+TGG | - | Chr2:82612139-82612158 | MsG0280011338.01.T01:CDS | 50.0% | |
| CACTCTCGTGCTATGTCTTC+TGG | + | Chr2:82611372-82611391 | None:intergenic | 50.0% | |
| GGATATCGTACGGAGATGCA+AGG | - | Chr2:82612035-82612054 | MsG0280011338.01.T01:CDS | 50.0% | |
| GGCACGATCAAAGTTGTTGG+TGG | - | Chr2:82612014-82612033 | MsG0280011338.01.T01:CDS | 50.0% | |
| TCCAAAAACTCCTCCTCGAC+CGG | + | Chr2:82612113-82612132 | None:intergenic | 50.0% | |
| TGGATGATGCCACATGTCCA+AGG | - | Chr2:82612129-82612148 | MsG0280011338.01.T01:CDS | 50.0% | |
| TGTCCAAGGACTTGTGTGGA+TGG | - | Chr2:82612143-82612162 | MsG0280011338.01.T01:CDS | 50.0% | |
| TGTTTGCCACCCTTTGCTCA+CGG | + | Chr2:82611436-82611455 | None:intergenic | 50.0% | |
| TTATCTGCTACGTGGCATCG+CGG | - | Chr2:82611777-82611796 | MsG0280011338.01.T01:CDS | 50.0% | |
| ! | ACGTGGCCGGTGAAATTTTC+TGG | + | Chr2:82612395-82612414 | None:intergenic | 50.0% |
| ! | ATGTTGCTTGTGTGGGAGCT+TGG | - | Chr2:82612270-82612289 | MsG0280011338.01.T01:CDS | 50.0% |
| ! | CGTGGCCGGTGAAATTTTCT+GGG | + | Chr2:82612394-82612413 | None:intergenic | 50.0% |
| ! | GATGATGTGGTGGCATTGGA+TGG | - | Chr2:82612203-82612222 | MsG0280011338.01.T01:CDS | 50.0% |
| ! | GTGTAAGGGTGATGATGTGG+TGG | - | Chr2:82612193-82612212 | MsG0280011338.01.T01:CDS | 50.0% |
| ! | GTGTTTTGTGCCGGAGACAA+TGG | - | Chr2:82611987-82612006 | MsG0280011338.01.T01:CDS | 50.0% |
| ! | TGTTGCTTGTGTGGGAGCTT+GGG | - | Chr2:82612271-82612290 | MsG0280011338.01.T01:CDS | 50.0% |
| AAAAATGTGCAGGGCCCACC+AGG | + | Chr2:82611813-82611832 | None:intergenic | 55.0% | |
| AGGAGTTCGATGTAGCCACG+TGG | - | Chr2:82612078-82612097 | MsG0280011338.01.T01:CDS | 55.0% | |
| AGTTCGATGTAGCCACGTGG+AGG | - | Chr2:82612081-82612100 | MsG0280011338.01.T01:CDS | 55.0% | |
| GACCTGTACTCCTCCGTACA+CGG | + | Chr2:82611482-82611501 | None:intergenic | 55.0% | |
| GAGGATGGGACCCTGATTCA+TGG | - | Chr2:82611721-82611740 | MsG0280011338.01.T01:CDS | 55.0% | |
| GCAACCAGATTGAACGTGGC+CGG | + | Chr2:82612408-82612427 | None:intergenic | 55.0% | |
| GCGATTCGAACGTAGTGCTG+AGG | - | Chr2:82612058-82612077 | MsG0280011338.01.T01:CDS | 55.0% | |
| GTGGATCCCGCTTCCTGATA+TGG | - | Chr2:82611938-82611957 | MsG0280011338.01.T01:CDS | 55.0% | |
| TATCTGCTACGTGGCATCGC+GGG | - | Chr2:82611778-82611797 | MsG0280011338.01.T01:CDS | 55.0% | |
| TCCCTCGCCATATCAGGAAG+CGG | + | Chr2:82611948-82611967 | None:intergenic | 55.0% | |
| TTCACCGGCCACGTTCAATC+TGG | - | Chr2:82612401-82612420 | MsG0280011338.01.T01:CDS | 55.0% | |
| ! | GGGTGATGATGTGGTGGCAT+TGG | - | Chr2:82612199-82612218 | MsG0280011338.01.T01:CDS | 55.0% |
| ! | TCCGGTCGAGGAGGAGTTTT+TGG | - | Chr2:82612109-82612128 | MsG0280011338.01.T01:CDS | 55.0% |
| ! | TGGCATTGGATGGTGACACG+TGG | - | Chr2:82612213-82612232 | MsG0280011338.01.T01:CDS | 55.0% |
| !! | CGAAGGTGCCTAGGGAGATA+AGG | - | Chr2:82612246-82612265 | MsG0280011338.01.T01:CDS | 55.0% |
| ATCTGCTACGTGGCATCGCG+GGG | - | Chr2:82611779-82611798 | MsG0280011338.01.T01:CDS | 60.0% | |
| CCCGCTTCCTGATATGGCGA+GGG | - | Chr2:82611944-82611963 | MsG0280011338.01.T01:CDS | 60.0% | |
| CCCTCGCCATATCAGGAAGC+GGG | + | Chr2:82611947-82611966 | None:intergenic | 60.0% | |
| CGATGTAGCCACGTGGAGGT+GGG | - | Chr2:82612085-82612104 | MsG0280011338.01.T01:CDS | 60.0% | |
| CGGTAGCCACCGTGAGCAAA+GGG | - | Chr2:82611424-82611443 | MsG0280011338.01.T01:CDS | 60.0% | |
| CGTGCCAGAGCCATTGTCTC+CGG | + | Chr2:82612000-82612019 | None:intergenic | 60.0% | |
| CTCCGTACACGGCGAAACTC+CGG | + | Chr2:82611471-82611490 | None:intergenic | 60.0% | |
| GATGTAGCCACGTGGAGGTG+GGG | - | Chr2:82612086-82612105 | MsG0280011338.01.T01:CDS | 60.0% | |
| GGATGGTGACACGTGGAAGG+TGG | - | Chr2:82612220-82612239 | MsG0280011338.01.T01:CDS | 60.0% | |
| TAGCCACCGTGAGCAAAGGG+TGG | - | Chr2:82611427-82611446 | MsG0280011338.01.T01:CDS | 60.0% | |
| TCACGCTCCCTCGCCATATC+AGG | + | Chr2:82611954-82611973 | None:intergenic | 60.0% | |
| TCCCGCTTCCTGATATGGCG+AGG | - | Chr2:82611943-82611962 | MsG0280011338.01.T01:CDS | 60.0% | |
| TCGATGTAGCCACGTGGAGG+TGG | - | Chr2:82612084-82612103 | MsG0280011338.01.T01:CDS | 60.0% | |
| TGGCTACCGCCGGAAATTCC+TGG | + | Chr2:82611413-82611432 | None:intergenic | 60.0% | |
| TGGTGACACGTGGAAGGTGG+TGG | - | Chr2:82612223-82612242 | MsG0280011338.01.T01:CDS | 60.0% | |
| TGTGCCGGAGACAATGGCTC+TGG | - | Chr2:82611993-82612012 | MsG0280011338.01.T01:CDS | 60.0% | |
| TGTGGCAGGAGGACATGACG+AGG | - | Chr2:82611866-82611885 | MsG0280011338.01.T01:CDS | 60.0% | |
| TTGCCACCCTTTGCTCACGG+TGG | + | Chr2:82611433-82611452 | None:intergenic | 60.0% | |
| CGCCGGAGTTTCGCCGTGTA+CGG | - | Chr2:82611466-82611485 | MsG0280011338.01.T01:CDS | 65.0% | |
| CGGAGTTTCGCCGTGTACGG+AGG | - | Chr2:82611469-82611488 | MsG0280011338.01.T01:CDS | 65.0% | |
| GCAGGGCCCACCAGGCATAT+CGG | + | Chr2:82611805-82611824 | None:intergenic | 65.0% | |
| GCGGTAGCCACCGTGAGCAA+AGG | - | Chr2:82611423-82611442 | MsG0280011338.01.T01:CDS | 65.0% | |
| TTGCTCACGGTGGCTACCGC+CGG | + | Chr2:82611423-82611442 | None:intergenic | 65.0% | |
| ! | CACGTGGAAGGTGGTGGCGA+AGG | - | Chr2:82612229-82612248 | MsG0280011338.01.T01:CDS | 65.0% |
| ! | CGCCGTGTACGGAGGAGTAC+AGG | - | Chr2:82611477-82611496 | MsG0280011338.01.T01:CDS | 65.0% |
| !! | AGGTGGTGGCGAAGGTGCCT+AGG | - | Chr2:82612237-82612256 | MsG0280011338.01.T01:CDS | 65.0% |
| !! | GGTGGTGGCGAAGGTGCCTA+GGG | - | Chr2:82612238-82612257 | MsG0280011338.01.T01:CDS | 65.0% |
| AGCCACGTGGAGGTGGGGTC+CGG | - | Chr2:82612091-82612110 | MsG0280011338.01.T01:CDS | 70.0% | |
| CATCGCGGGGCCGATATGCC+TGG | - | Chr2:82611792-82611811 | MsG0280011338.01.T01:CDS | 70.0% | |
| GCGGGGCCGATATGCCTGGT+GGG | - | Chr2:82611796-82611815 | MsG0280011338.01.T01:CDS | 70.0% | |
| CGCGGGGCCGATATGCCTGG+TGG | - | Chr2:82611795-82611814 | MsG0280011338.01.T01:CDS | 75.0% | |
| GACCGGACCCCACCTCCACG+TGG | + | Chr2:82612096-82612115 | None:intergenic | 75.0% | |
| GAGGTGGGGTCCGGTCGAGG+AGG | - | Chr2:82612100-82612119 | MsG0280011338.01.T01:CDS | 75.0% | |
| GTGGAGGTGGGGTCCGGTCG+AGG | - | Chr2:82612097-82612116 | MsG0280011338.01.T01:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 82611348 | 82612442 | 82611348 | ID=MsG0280011338.01;Name=MsG0280011338.01 |
| Chr2 | mRNA | 82611348 | 82612442 | 82611348 | ID=MsG0280011338.01.T01;Parent=MsG0280011338.01;Name=MsG0280011338.01.T01;_AED=0.43;_eAED=0.43;_QI=0|-1|0|1|-1|1|1|0|364 |
| Chr2 | exon | 82611348 | 82612442 | 82611348 | ID=MsG0280011338.01.T01:exon:12530;Parent=MsG0280011338.01.T01 |
| Chr2 | CDS | 82611348 | 82612442 | 82611348 | ID=MsG0280011338.01.T01:cds;Parent=MsG0280011338.01.T01 |
| Gene Sequence |
| Protein sequence |
