Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029275.01.T01 | XP_003616732.1 | 90.833 | 120 | 11 | 0 | 1 | 120 | 1 | 120 | 9.00E-75 | 228 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029275.01.T01 | I1JIC4 | 56.198 | 121 | 42 | 3 | 1 | 120 | 1 | 111 | 1.53E-34 | 119 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029275.01.T01 | G7K7B0 | 90.833 | 120 | 11 | 0 | 1 | 120 | 1 | 120 | 4.30e-75 | 228 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180000138.01 | MsG0580029275.01 | 0.819914 | 9.042346e-53 | 7.051701e-50 |
MsG0280011338.01 | MsG0580029275.01 | 0.869253 | 3.556483e-66 | 1.325771e-62 |
MsG0380014767.01 | MsG0580029275.01 | 0.891422 | 4.029908e-74 | 3.531286e-70 |
MsG0480021266.01 | MsG0580029275.01 | -0.809041 | 2.301631e-50 | 1.337087e-47 |
MsG0480022581.01 | MsG0580029275.01 | -0.837820 | 4.148538e-57 | 5.452923e-54 |
MsG0580025510.01 | MsG0580029275.01 | 0.811885 | 5.596851e-51 | 3.505544e-48 |
MsG0380015353.01 | MsG0580029275.01 | -0.810462 | 1.139091e-50 | 6.870465e-48 |
MsG0380015697.01 | MsG0580029275.01 | -0.836534 | 8.846535e-57 | 1.117999e-53 |
MsG0580029275.01 | MsG0680034122.01 | -0.802805 | 4.713679e-49 | 2.330785e-46 |
MsG0580029275.01 | MsG0680034431.01 | -0.806059 | 9.887062e-50 | 5.314898e-47 |
MsG0580029275.01 | MsG0780041740.01 | -0.805352 | 1.391324e-49 | 7.344574e-47 |
MsG0580029275.01 | MsG0880046227.01 | 0.813957 | 1.967673e-51 | 1.303138e-48 |
MsG0580029275.01 | MsG0880046422.01 | -0.806705 | 7.225449e-50 | 3.948553e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029275.01.T01 | MTR_5g083690 | 90.833 | 120 | 11 | 0 | 1 | 120 | 1 | 120 | 1.09e-78 | 228 |
MsG0580029275.01.T01 | MTR_7g090630 | 44.595 | 74 | 37 | 2 | 1 | 73 | 1 | 71 | 2.01e-15 | 67.0 |
MsG0580029275.01.T01 | MTR_7g090630 | 44.595 | 74 | 37 | 2 | 1 | 73 | 1 | 71 | 2.13e-15 | 67.0 |
MsG0580029275.01.T01 | MTR_3g023110 | 65.116 | 43 | 15 | 0 | 11 | 53 | 8 | 50 | 4.66e-15 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029275.01.T01 | AT2G41430 | 44.615 | 65 | 33 | 1 | 1 | 65 | 1 | 62 | 1.73e-14 | 65.1 |
MsG0580029275.01.T01 | AT2G41430 | 51.786 | 56 | 24 | 1 | 1 | 56 | 1 | 53 | 2.71e-14 | 65.5 |
MsG0580029275.01.T01 | AT2G41430 | 51.786 | 56 | 24 | 1 | 1 | 56 | 1 | 53 | 2.71e-14 | 65.5 |
MsG0580029275.01.T01 | AT2G41430 | 51.786 | 56 | 24 | 1 | 1 | 56 | 1 | 53 | 2.71e-14 | 65.5 |
MsG0580029275.01.T01 | AT2G41430 | 51.786 | 56 | 24 | 1 | 1 | 56 | 1 | 53 | 2.71e-14 | 65.5 |
MsG0580029275.01.T01 | AT4G14270 | 48.485 | 66 | 26 | 2 | 12 | 75 | 10 | 69 | 4.63e-13 | 62.0 |
MsG0580029275.01.T01 | AT4G14270 | 48.485 | 66 | 26 | 2 | 12 | 75 | 10 | 69 | 4.63e-13 | 62.0 |
Find 58 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGAGTTATGATTTGATTTC+AGG | 0.145964 | 5:+94641149 | MsG0580029275.01.T01:three_prime_UTR |
CCCCTTGGTTCTGTGATTAC+TGG | 0.155218 | 5:+94640607 | MsG0580029275.01.T01:CDS |
TGGGAAAGAGTTGATGAAAT+TGG | 0.243769 | 5:+94640945 | MsG0580029275.01.T01:CDS |
TTCATCAGCCCAGGTAGATT+TGG | 0.348718 | 5:+94641066 | MsG0580029275.01.T01:three_prime_UTR |
GATGGATGGGCTGAAGTTCC+AGG | 0.367486 | 5:+94640991 | MsG0580029275.01.T01:CDS |
ACCTCGTTCATTCCTCCCCT+TGG | 0.371694 | 5:+94640592 | MsG0580029275.01.T01:CDS |
GGGAAAGAGTTGATGAAATT+GGG | 0.389970 | 5:+94640946 | MsG0580029275.01.T01:CDS |
TTTCATAGTTCTGAGGATCT+TGG | 0.395345 | 5:-94640644 | None:intergenic |
TCAAGGTTGAAAATTTGTTA+AGG | 0.423651 | 5:+94641343 | MsG0580029275.01.T01:three_prime_UTR |
CGGAGCCTTCTCAGCATACC+TGG | 0.426067 | 5:-94641009 | None:intergenic |
GAGGATCTTGGAAGCGTTCA+CGG | 0.427509 | 5:-94640632 | None:intergenic |
AGAGTTATGATTTGATTTCA+GGG | 0.428885 | 5:+94641150 | MsG0580029275.01.T01:three_prime_UTR |
AATAGCCCGTGGGCTCACTC+TGG | 0.435925 | 5:-94641045 | None:intergenic |
ACTTCCATAGCTGCGTTTGT+TGG | 0.442292 | 5:-94640465 | None:intergenic |
TGAAATTGGGATCGTTGAAA+TGG | 0.456391 | 5:+94640959 | MsG0580029275.01.T01:CDS |
ACTCTGGGCTTCACAATCTT+CGG | 0.460415 | 5:-94641029 | None:intergenic |
GCGCGTGTAGAACACGAAGA+TGG | 0.465797 | 5:+94640925 | MsG0580029275.01.T01:intron |
CGCGTGTAGAACACGAAGAT+GGG | 0.474343 | 5:+94640926 | MsG0580029275.01.T01:intron |
GGAACGAACATCGGAGCGTT+GGG | 0.476212 | 5:-94640525 | None:intergenic |
CGGAACGAACATCGGAGCGT+TGG | 0.492883 | 5:-94640526 | None:intergenic |
TTTGGTGGCAAAGTGGAAAC+TGG | 0.504496 | 5:+94641084 | MsG0580029275.01.T01:three_prime_UTR |
ATCAGCCCAGGTAGATTTGG+TGG | 0.507054 | 5:+94641069 | MsG0580029275.01.T01:three_prime_UTR |
CTTGTAGATCTCAATGATCA+AGG | 0.510028 | 5:+94641326 | MsG0580029275.01.T01:three_prime_UTR |
ACTTTGCCACCAAATCTACC+TGG | 0.520178 | 5:-94641075 | None:intergenic |
GGGGTTCAATTTCATGAACA+TGG | 0.523834 | 5:-94640713 | None:intergenic |
GATTTGTTATGTTGTTGTGT+GGG | 0.529342 | 5:+94641290 | MsG0580029275.01.T01:three_prime_UTR |
GTTGGGATTCAGCGAGGAGG+AGG | 0.529767 | 5:-94640508 | None:intergenic |
TGGAGGATTTCTCCGATGAA+TGG | 0.530316 | 5:+94640565 | MsG0580029275.01.T01:CDS |
ATAGCCCGTGGGCTCACTCT+GGG | 0.531409 | 5:-94641044 | None:intergenic |
AAGTTCCAGGTATGCTGAGA+AGG | 0.533909 | 5:+94641004 | MsG0580029275.01.T01:CDS |
TGATTTGTTATGTTGTTGTG+TGG | 0.534193 | 5:+94641289 | MsG0580029275.01.T01:three_prime_UTR |
ATCACCAACAAACGCAGCTA+TGG | 0.534245 | 5:+94640461 | MsG0580029275.01.T01:exon |
AAAAGAAGATAAGAATGAAG+CGG | 0.560581 | 5:-94640419 | None:intergenic |
AACGAGGTTCCACCATTCAT+CGG | 0.566948 | 5:-94640577 | None:intergenic |
CTGGGCTGATGAATAGCCCG+TGG | 0.567215 | 5:-94641056 | None:intergenic |
TGAAGCCCAGAGTGAGCCCA+CGG | 0.571247 | 5:+94641039 | MsG0580029275.01.T01:exon |
GCCAGTAATCACAGAACCAA+GGG | 0.574794 | 5:-94640608 | None:intergenic |
TTGAAATGGAGAGGATCTGA+TGG | 0.578122 | 5:+94640973 | MsG0580029275.01.T01:CDS |
CACGGGCTATTCATCAGCCC+AGG | 0.580678 | 5:+94641057 | MsG0580029275.01.T01:three_prime_UTR |
TACGCAAGCGGAACGAACAT+CGG | 0.582960 | 5:-94640534 | None:intergenic |
CGTTCCGCTTGCGTATCGTA+CGG | 0.583236 | 5:+94640542 | MsG0580029275.01.T01:CDS |
GCTTGCGTATCGTACGGTGG+AGG | 0.600361 | 5:+94640548 | MsG0580029275.01.T01:CDS |
TTGGGATCGTTGAAATGGAG+AGG | 0.600872 | 5:+94640964 | MsG0580029275.01.T01:CDS |
AGGTAGATTTGGTGGCAAAG+TGG | 0.603013 | 5:+94641077 | MsG0580029275.01.T01:three_prime_UTR |
AGGATTTCTCCGATGAATGG+TGG | 0.617511 | 5:+94640568 | MsG0580029275.01.T01:CDS |
AATGGAGAGGATCTGATGGA+TGG | 0.618481 | 5:+94640977 | MsG0580029275.01.T01:CDS |
ATGGAGAGGATCTGATGGAT+GGG | 0.622633 | 5:+94640978 | MsG0580029275.01.T01:CDS |
CTTTGCCACCAAATCTACCT+GGG | 0.625860 | 5:-94641074 | None:intergenic |
GAAGCCCAGAGTGAGCCCAC+GGG | 0.627082 | 5:+94641040 | MsG0580029275.01.T01:exon |
AGCCAGTAATCACAGAACCA+AGG | 0.657318 | 5:-94640609 | None:intergenic |
TGGGCTGATGAATAGCCCGT+GGG | 0.658555 | 5:-94641055 | None:intergenic |
TCCACCGTACGATACGCAAG+CGG | 0.663483 | 5:-94640546 | None:intergenic |
TCCGCTTGCGTATCGTACGG+TGG | 0.666184 | 5:+94640545 | MsG0580029275.01.T01:CDS |
AGCGTTGGGATTCAGCGAGG+AGG | 0.680838 | 5:-94640511 | None:intergenic |
GTAATCACAGAACCAAGGGG+AGG | 0.706596 | 5:-94640604 | None:intergenic |
CCAGTAATCACAGAACCAAG+GGG | 0.731389 | 5:-94640607 | None:intergenic |
ACCAAGGGGAGGAATGAACG+AGG | 0.740764 | 5:-94640593 | None:intergenic |
CGGAGCGTTGGGATTCAGCG+AGG | 0.742236 | 5:-94640514 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAACTCTAATTATTTTTTTA+CGG | - | Chr5:94641137-94641156 | None:intergenic | 10.0% |
!!! | AACTCTAATTATTTTTTTAC+GGG | - | Chr5:94641136-94641155 | None:intergenic | 15.0% |
!!! | ATTTATGTGATTAATTTTGA+TGG | + | Chr5:94640877-94640896 | MsG0580029275.01.T01:intron | 15.0% |
!! | AATAAAGTAAAATAGCTTAC+GGG | - | Chr5:94640736-94640755 | None:intergenic | 20.0% |
!! | CAATAAAGTAAAATAGCTTA+CGG | - | Chr5:94640737-94640756 | None:intergenic | 20.0% |
!!! | GATTAATTTTGATGGATTAA+TGG | + | Chr5:94640885-94640904 | MsG0580029275.01.T01:intron | 20.0% |
! | AAAAGAAGATAAGAATGAAG+CGG | - | Chr5:94640422-94640441 | None:intergenic | 25.0% |
! | ATAAAGTAAAATAGCTTACG+GGG | - | Chr5:94640735-94640754 | None:intergenic | 25.0% |
!! | AGAGTTATGATTTGATTTCA+GGG | + | Chr5:94641150-94641169 | MsG0580029275.01.T01:three_prime_UTR | 25.0% |
!! | TAGAGTTATGATTTGATTTC+AGG | + | Chr5:94641149-94641168 | MsG0580029275.01.T01:three_prime_UTR | 25.0% |
!!! | GTTTTCTGATTTTGAAATGA+TGG | + | Chr5:94640674-94640693 | MsG0580029275.01.T01:CDS | 25.0% |
!!! | TCAAGGTTGAAAATTTGTTA+AGG | + | Chr5:94641343-94641362 | MsG0580029275.01.T01:three_prime_UTR | 25.0% |
! | AATGGATCTGATGTTTGTTT+TGG | + | Chr5:94640903-94640922 | MsG0580029275.01.T01:intron | 30.0% |
!! | GATTTGTTATGTTGTTGTGT+GGG | + | Chr5:94641290-94641309 | MsG0580029275.01.T01:three_prime_UTR | 30.0% |
!! | TGATTTGTTATGTTGTTGTG+TGG | + | Chr5:94641289-94641308 | MsG0580029275.01.T01:three_prime_UTR | 30.0% |
CTTGTAGATCTCAATGATCA+AGG | + | Chr5:94641326-94641345 | MsG0580029275.01.T01:three_prime_UTR | 35.0% | |
TGAAATTGGGATCGTTGAAA+TGG | + | Chr5:94640959-94640978 | MsG0580029275.01.T01:CDS | 35.0% | |
!! | GAGTCATTTTCATAGTTCTG+AGG | - | Chr5:94640654-94640673 | None:intergenic | 35.0% |
!! | GGGAAAGAGTTGATGAAATT+GGG | + | Chr5:94640946-94640965 | MsG0580029275.01.T01:CDS | 35.0% |
!! | TGGGAAAGAGTTGATGAAAT+TGG | + | Chr5:94640945-94640964 | MsG0580029275.01.T01:CDS | 35.0% |
!! | TTTCATAGTTCTGAGGATCT+TGG | - | Chr5:94640647-94640666 | None:intergenic | 35.0% |
GGGGTTCAATTTCATGAACA+TGG | - | Chr5:94640716-94640735 | None:intergenic | 40.0% | |
TTGAAATGGAGAGGATCTGA+TGG | + | Chr5:94640973-94640992 | MsG0580029275.01.T01:CDS | 40.0% | |
AACGAGGTTCCACCATTCAT+CGG | - | Chr5:94640580-94640599 | None:intergenic | 45.0% | |
AAGTTCCAGGTATGCTGAGA+AGG | + | Chr5:94641004-94641023 | MsG0580029275.01.T01:CDS | 45.0% | |
AATGGAGAGGATCTGATGGA+TGG | + | Chr5:94640977-94640996 | MsG0580029275.01.T01:CDS | 45.0% | |
ACTCTGGGCTTCACAATCTT+CGG | - | Chr5:94641032-94641051 | None:intergenic | 45.0% | |
ACTTCCATAGCTGCGTTTGT+TGG | - | Chr5:94640468-94640487 | None:intergenic | 45.0% | |
ACTTTGCCACCAAATCTACC+TGG | - | Chr5:94641078-94641097 | None:intergenic | 45.0% | |
AGCCAGTAATCACAGAACCA+AGG | - | Chr5:94640612-94640631 | None:intergenic | 45.0% | |
AGGATTTCTCCGATGAATGG+TGG | + | Chr5:94640568-94640587 | MsG0580029275.01.T01:CDS | 45.0% | |
ATCACCAACAAACGCAGCTA+TGG | + | Chr5:94640461-94640480 | MsG0580029275.01.T01:exon | 45.0% | |
CCAGTAATCACAGAACCAAG+GGG | - | Chr5:94640610-94640629 | None:intergenic | 45.0% | |
CTTTGCCACCAAATCTACCT+GGG | - | Chr5:94641077-94641096 | None:intergenic | 45.0% | |
GCCAGTAATCACAGAACCAA+GGG | - | Chr5:94640611-94640630 | None:intergenic | 45.0% | |
TGGAGGATTTCTCCGATGAA+TGG | + | Chr5:94640565-94640584 | MsG0580029275.01.T01:CDS | 45.0% | |
TTCATCAGCCCAGGTAGATT+TGG | + | Chr5:94641066-94641085 | MsG0580029275.01.T01:three_prime_UTR | 45.0% | |
TTGGGATCGTTGAAATGGAG+AGG | + | Chr5:94640964-94640983 | MsG0580029275.01.T01:CDS | 45.0% | |
! | ATGGAGAGGATCTGATGGAT+GGG | + | Chr5:94640978-94640997 | MsG0580029275.01.T01:CDS | 45.0% |
! | TTTGGTGGCAAAGTGGAAAC+TGG | + | Chr5:94641084-94641103 | MsG0580029275.01.T01:three_prime_UTR | 45.0% |
!! | AGGTAGATTTGGTGGCAAAG+TGG | + | Chr5:94641077-94641096 | MsG0580029275.01.T01:three_prime_UTR | 45.0% |
ATCAGCCCAGGTAGATTTGG+TGG | + | Chr5:94641069-94641088 | MsG0580029275.01.T01:three_prime_UTR | 50.0% | |
CGCGTGTAGAACACGAAGAT+GGG | + | Chr5:94640926-94640945 | MsG0580029275.01.T01:intron | 50.0% | |
GTAATCACAGAACCAAGGGG+AGG | - | Chr5:94640607-94640626 | None:intergenic | 50.0% | |
TACGCAAGCGGAACGAACAT+CGG | - | Chr5:94640537-94640556 | None:intergenic | 50.0% | |
!! | CCCCTTGGTTCTGTGATTAC+TGG | + | Chr5:94640607-94640626 | MsG0580029275.01.T01:CDS | 50.0% |
!! | GAGGATCTTGGAAGCGTTCA+CGG | - | Chr5:94640635-94640654 | None:intergenic | 50.0% |
ACCAAGGGGAGGAATGAACG+AGG | - | Chr5:94640596-94640615 | None:intergenic | 55.0% | |
ACCTCGTTCATTCCTCCCCT+TGG | + | Chr5:94640592-94640611 | MsG0580029275.01.T01:CDS | 55.0% | |
CGTTCCGCTTGCGTATCGTA+CGG | + | Chr5:94640542-94640561 | MsG0580029275.01.T01:CDS | 55.0% | |
GCGCGTGTAGAACACGAAGA+TGG | + | Chr5:94640925-94640944 | MsG0580029275.01.T01:intron | 55.0% | |
TCCACCGTACGATACGCAAG+CGG | - | Chr5:94640549-94640568 | None:intergenic | 55.0% | |
TGGGCTGATGAATAGCCCGT+GGG | - | Chr5:94641058-94641077 | None:intergenic | 55.0% | |
! | GGAACGAACATCGGAGCGTT+GGG | - | Chr5:94640528-94640547 | None:intergenic | 55.0% |
!! | GATGGATGGGCTGAAGTTCC+AGG | + | Chr5:94640991-94641010 | MsG0580029275.01.T01:CDS | 55.0% |
AATAGCCCGTGGGCTCACTC+TGG | - | Chr5:94641048-94641067 | None:intergenic | 60.0% | |
ATAGCCCGTGGGCTCACTCT+GGG | - | Chr5:94641047-94641066 | None:intergenic | 60.0% | |
CGGAACGAACATCGGAGCGT+TGG | - | Chr5:94640529-94640548 | None:intergenic | 60.0% | |
CGGAGCCTTCTCAGCATACC+TGG | - | Chr5:94641012-94641031 | None:intergenic | 60.0% | |
CTGGGCTGATGAATAGCCCG+TGG | - | Chr5:94641059-94641078 | None:intergenic | 60.0% | |
GCTTGCGTATCGTACGGTGG+AGG | + | Chr5:94640548-94640567 | MsG0580029275.01.T01:CDS | 60.0% | |
GTTGGGATTCAGCGAGGAGG+AGG | - | Chr5:94640511-94640530 | None:intergenic | 60.0% | |
TCCGCTTGCGTATCGTACGG+TGG | + | Chr5:94640545-94640564 | MsG0580029275.01.T01:CDS | 60.0% | |
TGAAGCCCAGAGTGAGCCCA+CGG | + | Chr5:94641039-94641058 | MsG0580029275.01.T01:exon | 60.0% | |
! | AGCGTTGGGATTCAGCGAGG+AGG | - | Chr5:94640514-94640533 | None:intergenic | 60.0% |
! | CACGGGCTATTCATCAGCCC+AGG | + | Chr5:94641057-94641076 | MsG0580029275.01.T01:three_prime_UTR | 60.0% |
GAAGCCCAGAGTGAGCCCAC+GGG | + | Chr5:94641040-94641059 | MsG0580029275.01.T01:exon | 65.0% | |
!! | CGGAGCGTTGGGATTCAGCG+AGG | - | Chr5:94640517-94640536 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 94640374 | 94641393 | 94640374 | ID=MsG0580029275.01;Name=MsG0580029275.01 |
Chr5 | mRNA | 94640374 | 94641393 | 94640374 | ID=MsG0580029275.01.T01;Parent=MsG0580029275.01;Name=MsG0580029275.01.T01;_AED=0.18;_eAED=0.18;_QI=106|1|1|1|1|1|2|352|120 |
Chr5 | exon | 94640374 | 94640735 | 94640374 | ID=MsG0580029275.01.T01:exon:49885;Parent=MsG0580029275.01.T01 |
Chr5 | exon | 94640935 | 94641393 | 94640935 | ID=MsG0580029275.01.T01:exon:49886;Parent=MsG0580029275.01.T01 |
Chr5 | five_prime_UTR | 94640374 | 94640479 | 94640374 | ID=MsG0580029275.01.T01:five_prime_utr;Parent=MsG0580029275.01.T01 |
Chr5 | CDS | 94640480 | 94640735 | 94640480 | ID=MsG0580029275.01.T01:cds;Parent=MsG0580029275.01.T01 |
Chr5 | CDS | 94640935 | 94641041 | 94640935 | ID=MsG0580029275.01.T01:cds;Parent=MsG0580029275.01.T01 |
Chr5 | three_prime_UTR | 94641042 | 94641393 | 94641042 | ID=MsG0580029275.01.T01:three_prime_utr;Parent=MsG0580029275.01.T01 |
Gene Sequence |
Protein sequence |